Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442250 | XP_003598309.1 | 93.483 | 491 | 12 | 2 | 1 | 491 | 1 | 471 | 0.0 | 935 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442250 | sp|Q9FKT0|ARP8_ARATH | 63.190 | 489 | 156 | 6 | 3 | 487 | 1 | 469 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442250 | G7J0F5 | 93.483 | 491 | 12 | 2 | 1 | 491 | 1 | 471 | 0.0 | 935 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038020 | Msa0442250 | 0.801411 | 9.118940e-49 | -8.615850e-47 |
| Msa0050730 | Msa0442250 | 0.824323 | 8.590432e-54 | -8.615850e-47 |
| Msa0050760 | Msa0442250 | 0.820280 | 7.454104e-53 | -8.615850e-47 |
| Msa0085720 | Msa0442250 | 0.834712 | 2.557643e-56 | -8.615850e-47 |
| Msa0175050 | Msa0442250 | 0.814491 | 1.499721e-51 | -8.615850e-47 |
| Msa0223290 | Msa0442250 | 0.802359 | 5.823011e-49 | -8.615850e-47 |
| Msa0365490 | Msa0442250 | 0.818529 | 1.868938e-52 | -8.615850e-47 |
| Msa0388030 | Msa0442250 | -0.841923 | 3.539664e-58 | -8.615850e-47 |
| Msa0404700 | Msa0442250 | 0.809977 | 1.448838e-50 | -8.615850e-47 |
| Msa0432480 | Msa0442250 | 0.801101 | 1.055248e-48 | -8.615850e-47 |
| Msa0442250 | Msa0458440 | 0.810592 | 1.067508e-50 | -8.615850e-47 |
| Msa0442250 | Msa0464900 | 0.840845 | 6.803905e-58 | -8.615850e-47 |
| Msa0442250 | Msa0475410 | 0.805415 | 1.349648e-49 | -8.615850e-47 |
| Msa0442250 | Msa0489710 | 0.840768 | 7.127772e-58 | -8.615850e-47 |
| Msa0442250 | Msa0505060 | 0.845743 | 3.356804e-59 | -8.615850e-47 |
| Msa0442250 | Msa0527980 | -0.807790 | 4.254928e-50 | -8.615850e-47 |
| Msa0442250 | Msa0622340 | 0.815880 | 7.370044e-52 | -8.615850e-47 |
| Msa0442250 | Msa0626220 | 0.823084 | 1.675096e-53 | -8.615850e-47 |
| Msa0442250 | Msa0694250 | 0.814449 | 1.531773e-51 | -8.615850e-47 |
| Msa0442250 | Msa0724950 | 0.828230 | 1.009098e-54 | -8.615850e-47 |
| Msa0442250 | Msa0757050 | 0.814976 | 1.170824e-51 | -8.615850e-47 |
| Msa0442250 | Msa0763080 | 0.830149 | 3.454328e-55 | -8.615850e-47 |
| Msa0442250 | Msa0798030 | 0.803189 | 3.924690e-49 | -8.615850e-47 |
| Msa0442250 | Msa0798060 | 0.805958 | 1.038046e-49 | -8.615850e-47 |
| Msa0442250 | Msa0799060 | 0.813996 | 1.928544e-51 | -8.615850e-47 |
| Msa0442250 | Msa0845070 | 0.832011 | 1.205700e-55 | -8.615850e-47 |
| Msa0442250 | Msa0893810 | 0.809986 | 1.442809e-50 | -8.615850e-47 |
| Msa0442250 | Msa0899230 | 0.805093 | 1.576430e-49 | -8.615850e-47 |
| Msa0442250 | Msa0908170 | 0.831652 | 1.478735e-55 | -8.615850e-47 |
| Msa0442250 | Msa0930400 | -0.830906 | 2.255049e-55 | -8.615850e-47 |
| Msa0442250 | Msa0959010 | 0.816925 | 4.300574e-52 | -8.615850e-47 |
| Msa0442250 | Msa0993530 | 0.828792 | 7.383867e-55 | -8.615850e-47 |
| Msa0442250 | Msa1021510 | 0.800734 | 1.254518e-48 | -8.615850e-47 |
| Msa0442250 | Msa1040520 | 0.805071 | 1.593050e-49 | -8.615850e-47 |
| Msa0442250 | Msa1087470 | 0.809798 | 1.583610e-50 | -8.615850e-47 |
| Msa0442250 | Msa1127770 | 0.807315 | 5.368594e-50 | -8.615850e-47 |
| Msa0442250 | Msa1174310 | 0.812788 | 3.554760e-51 | -8.615850e-47 |
| Msa0442250 | Msa1218650 | 0.811615 | 6.406814e-51 | -8.615850e-47 |
| Msa0442250 | Msa1219520 | 0.820855 | 5.500371e-53 | -8.615850e-47 |
| Msa0442250 | Msa1235400 | 0.810678 | 1.022830e-50 | -8.615850e-47 |
| Msa0442250 | Msa1249920 | 0.805136 | 1.544147e-49 | -8.615850e-47 |
| Msa0442250 | Msa1314770 | 0.821963 | 3.053006e-53 | -8.615850e-47 |
| Msa0442250 | Msa1367390 | -0.800510 | 1.393201e-48 | -8.615850e-47 |
| Msa0442250 | Msa1409350 | 0.814655 | 1.379660e-51 | -8.615850e-47 |
| Msa0442250 | Msa1415130 | 0.819138 | 1.359534e-52 | -8.615850e-47 |
| Msa0442250 | Msa1419110 | 0.821123 | 4.773040e-53 | -8.615850e-47 |
| Msa0442250 | Msa1422840 | 0.802716 | 4.917160e-49 | -8.615850e-47 |
| Msa0442250 | Msa1436040 | 0.801702 | 7.948740e-49 | -8.615850e-47 |
| Msa0442250 | Msa1439230 | 0.817950 | 2.527171e-52 | -8.615850e-47 |
| Msa0442250 | Msa1440600 | 0.821365 | 4.197788e-53 | -8.615850e-47 |
| Msa0243690 | Msa0442250 | 0.815884 | 7.352352e-52 | -8.615850e-47 |
| Msa0250670 | Msa0442250 | 0.802926 | 4.448656e-49 | -8.615850e-47 |
| Msa0289400 | Msa0442250 | 0.811385 | 7.189829e-51 | -8.615850e-47 |
| Msa0312310 | Msa0442250 | 0.803098 | 4.100326e-49 | -8.615850e-47 |
| Msa0347650 | Msa0442250 | 0.873458 | 1.447284e-67 | -8.615850e-47 |
| Msa0363170 | Msa0442250 | 0.814265 | 1.682222e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442250 | MtrunA17_Chr3g0080021 | 93.483 | 491 | 12 | 2 | 1 | 491 | 1 | 471 | 0.0 | 935 |
| Msa0442250 | MtrunA17_Chr8g0369101 | 66.129 | 496 | 144 | 6 | 1 | 491 | 1 | 477 | 0.0 | 656 |
| Msa0442250 | MtrunA17_Chr7g0223901 | 31.313 | 297 | 180 | 9 | 199 | 487 | 91 | 371 | 5.31e-42 | 154 |
| Msa0442250 | MtrunA17_Chr6g0448881 | 29.966 | 297 | 184 | 9 | 199 | 487 | 91 | 371 | 7.53e-41 | 150 |
| Msa0442250 | MtrunA17_Chr2g0328091 | 30.640 | 297 | 182 | 9 | 199 | 487 | 91 | 371 | 1.01e-40 | 150 |
| Msa0442250 | MtrunA17_Chr1g0175391 | 30.640 | 297 | 182 | 9 | 199 | 487 | 91 | 371 | 5.10e-40 | 148 |
| Msa0442250 | MtrunA17_Chr2g0278591 | 31.228 | 285 | 172 | 9 | 199 | 475 | 91 | 359 | 7.07e-40 | 148 |
| Msa0442250 | MtrunA17_Chr3g0129641 | 30.976 | 297 | 181 | 9 | 199 | 487 | 91 | 371 | 1.19e-39 | 147 |
| Msa0442250 | MtrunA17_Chr7g0258721 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 1.85e-39 | 147 |
| Msa0442250 | MtrunA17_Chr7g0224401 | 26.351 | 296 | 178 | 11 | 201 | 474 | 92 | 369 | 1.39e-21 | 96.7 |
| Msa0442250 | MtrunA17_Chr3g0089031 | 24.823 | 282 | 184 | 11 | 213 | 484 | 90 | 353 | 8.08e-17 | 82.0 |
| Msa0442250 | MtrunA17_Chr8g0381261 | 24.125 | 257 | 163 | 9 | 200 | 437 | 110 | 353 | 1.43e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442250 | AT5G56180.1 | 63.190 | 489 | 156 | 6 | 3 | 487 | 1 | 469 | 0.0 | 633 |
| Msa0442250 | AT5G56180.3 | 71.010 | 307 | 88 | 1 | 181 | 487 | 32 | 337 | 3.73e-168 | 478 |
| Msa0442250 | AT5G56180.2 | 62.760 | 384 | 119 | 6 | 3 | 382 | 1 | 364 | 3.87e-167 | 477 |
| Msa0442250 | AT3G12110.1 | 31.313 | 297 | 180 | 9 | 199 | 487 | 91 | 371 | 3.33e-42 | 154 |
| Msa0442250 | AT2G42090.1 | 30.952 | 294 | 176 | 10 | 199 | 483 | 80 | 355 | 9.59e-41 | 150 |
| Msa0442250 | AT3G53750.1 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 2.02e-40 | 149 |
| Msa0442250 | AT3G53750.2 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 2.02e-40 | 149 |
| Msa0442250 | AT2G37620.1 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 2.02e-40 | 149 |
| Msa0442250 | AT2G37620.3 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 2.02e-40 | 149 |
| Msa0442250 | AT2G37620.2 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 2.02e-40 | 149 |
| Msa0442250 | AT2G37620.4 | 30.303 | 297 | 183 | 9 | 199 | 487 | 91 | 371 | 2.02e-40 | 149 |
| Msa0442250 | AT5G09810.1 | 31.081 | 296 | 182 | 8 | 199 | 487 | 91 | 371 | 1.01e-39 | 147 |
| Msa0442250 | AT2G42100.1 | 29.352 | 293 | 183 | 9 | 199 | 483 | 92 | 368 | 2.80e-38 | 144 |
| Msa0442250 | AT3G46520.2 | 29.630 | 297 | 185 | 8 | 199 | 487 | 91 | 371 | 5.24e-38 | 143 |
| Msa0442250 | AT3G46520.1 | 29.630 | 297 | 185 | 8 | 199 | 487 | 91 | 371 | 5.24e-38 | 143 |
| Msa0442250 | AT3G18780.2 | 30.634 | 284 | 173 | 9 | 199 | 474 | 91 | 358 | 1.44e-37 | 142 |
| Msa0442250 | AT3G18780.3 | 30.634 | 284 | 173 | 9 | 199 | 474 | 91 | 358 | 1.44e-37 | 142 |
| Msa0442250 | AT1G49240.1 | 30.634 | 284 | 173 | 9 | 199 | 474 | 91 | 358 | 1.47e-37 | 142 |
| Msa0442250 | AT5G59370.2 | 29.293 | 297 | 186 | 8 | 199 | 487 | 91 | 371 | 1.78e-37 | 142 |
| Msa0442250 | AT5G59370.1 | 29.293 | 297 | 186 | 8 | 199 | 487 | 91 | 371 | 1.78e-37 | 142 |
| Msa0442250 | AT3G18780.1 | 30.714 | 280 | 170 | 9 | 199 | 470 | 91 | 354 | 6.49e-37 | 140 |
| Msa0442250 | AT2G42170.1 | 27.907 | 301 | 188 | 9 | 196 | 487 | 43 | 323 | 2.16e-35 | 135 |
| Msa0442250 | AT2G42170.3 | 27.907 | 301 | 188 | 9 | 196 | 487 | 43 | 323 | 2.16e-35 | 135 |
| Msa0442250 | AT2G42170.4 | 28.873 | 284 | 173 | 9 | 196 | 470 | 43 | 306 | 3.18e-34 | 131 |
| Msa0442250 | AT2G42170.2 | 28.873 | 284 | 173 | 9 | 196 | 470 | 43 | 306 | 3.18e-34 | 131 |
| Msa0442250 | AT2G42170.5 | 29.075 | 227 | 143 | 6 | 269 | 487 | 9 | 225 | 4.15e-26 | 106 |
| Msa0442250 | AT3G27000.1 | 24.538 | 379 | 215 | 14 | 152 | 474 | 6 | 369 | 3.21e-20 | 92.8 |
| Msa0442250 | AT3G60830.1 | 25.979 | 281 | 179 | 10 | 213 | 483 | 91 | 352 | 4.09e-19 | 89.4 |
| Msa0442250 | AT1G13180.1 | 22.601 | 323 | 203 | 13 | 194 | 483 | 103 | 411 | 4.72e-12 | 68.2 |
Find 126 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAACTAATTTGATTTC+TGG | 0.119091 | 3_3:+11720372 | Msa0442250:CDS |
| CTGTGTCTGATAATCGTTTA+TGG | 0.137810 | 3_3:+11720295 | Msa0442250:CDS |
| ACAATCTCAAAAGTGATATT+TGG | 0.176810 | 3_3:-11727110 | None:intergenic |
| CTGTCATTCAAACATATTTA+TGG | 0.206225 | 3_3:+11722065 | Msa0442250:CDS |
| TGTACAATGATTGAAAATTT+AGG | 0.234560 | 3_3:-11725120 | None:intergenic |
| ATTCTGCACCCTCCAACTTT+AGG | 0.242008 | 3_3:+11727020 | Msa0442250:three_prime_UTR |
| TGAGCACATTTCCTGGTTCT+TGG | 0.255805 | 3_3:+11726903 | Msa0442250:CDS |
| GGTTCCGGCTATTGCAAATT+TGG | 0.256929 | 3_3:+11722217 | Msa0442250:CDS |
| TTCTGCACCCTCCAACTTTA+GGG | 0.267008 | 3_3:+11727021 | Msa0442250:three_prime_UTR |
| GCCGTTGCCGTGTGGTGATA+TGG | 0.284060 | 3_3:+11720167 | Msa0442250:CDS |
| CCTGGTGCTATTATCATTGA+TGG | 0.305349 | 3_3:+11722104 | Msa0442250:CDS |
| TTTAGGGAGGCTGGAATAAT+AGG | 0.307504 | 3_3:+11727037 | Msa0442250:three_prime_UTR |
| GAAGAATAGTTGGTTAAGTT+TGG | 0.323234 | 3_3:-11719981 | None:intergenic |
| TGAGGCCGAGCCTAGGCTTC+TGG | 0.337824 | 3_3:-11726949 | None:intergenic |
| TCTGGAATAGCTGTTAATAT+AGG | 0.337868 | 3_3:+11724661 | Msa0442250:CDS |
| AACTGCATGTTTGCCAGGTT+TGG | 0.340994 | 3_3:+11725895 | Msa0442250:CDS |
| AGCAAATATGCTTGTCCATC+GGG | 0.346514 | 3_3:+11722244 | Msa0442250:CDS |
| CTGGGAGATCTGAAAGTTAC+AGG | 0.349712 | 3_3:+11725067 | Msa0442250:CDS |
| GGTCAGAGAGCTCAGGTTCC+TGG | 0.353049 | 3_3:+11722086 | Msa0442250:CDS |
| TATGCTGCAAAACGAACTTC+TGG | 0.356150 | 3_3:+11724643 | Msa0442250:CDS |
| TGAATGACAGCTGGGGCCTC+TGG | 0.370029 | 3_3:-11722052 | None:intergenic |
| TTATTCAAGCCACATCTTGC+TGG | 0.370601 | 3_3:+11725393 | Msa0442250:CDS |
| CTCATCAATCTGATCCATCT+TGG | 0.373229 | 3_3:+11720334 | Msa0442250:CDS |
| GAAAGTTACAGGATTTCTTA+AGG | 0.378797 | 3_3:+11725078 | Msa0442250:CDS |
| TCCGTGAATTGCAGATCCTT+TGG | 0.386716 | 3_3:+11722029 | Msa0442250:CDS |
| CAGGAACATTCAAGTCGAAC+AGG | 0.394489 | 3_3:-11724023 | None:intergenic |
| GAAAGAGAGTGAAGAATAGT+TGG | 0.401603 | 3_3:-11719991 | None:intergenic |
| CGGTGTGGAAGTTGTGGGAC+TGG | 0.402375 | 3_3:+11725048 | Msa0442250:CDS |
| CCCTCCAACTTTAGGGAGGC+TGG | 0.409889 | 3_3:+11727028 | Msa0442250:three_prime_UTR |
| GTACAGTTGAGCACATTTCC+TGG | 0.411777 | 3_3:+11726896 | Msa0442250:intron |
| TTACCATCATAATGGCATAT+TGG | 0.430990 | 3_3:-11723767 | None:intergenic |
| GGAGGAACTGCATGTTTGCC+AGG | 0.432955 | 3_3:+11725890 | Msa0442250:CDS |
| TTTCGAGTACTTCAAATCCT+TGG | 0.433199 | 3_3:-11727219 | None:intergenic |
| CCGTTGCCGTGTGGTGATAT+GGG | 0.441345 | 3_3:+11720168 | Msa0442250:CDS |
| CTAATTCCATTGGACATGTA+TGG | 0.441876 | 3_3:-11726375 | None:intergenic |
| CCGGCTATTGCAAATTTGGT+TGG | 0.449861 | 3_3:+11722221 | Msa0442250:CDS |
| AGCCTAGGCTCGGCCTCATA+TGG | 0.450315 | 3_3:+11726954 | Msa0442250:CDS |
| TGCCATTCTGCAGGATTACC+AGG | 0.453869 | 3_3:+11725833 | Msa0442250:CDS |
| CACTGTTCGCGCTTTGAAAG+AGG | 0.459873 | 3_3:+11725141 | Msa0442250:CDS |
| AACTATAGATATTATGATAT+AGG | 0.461050 | 3_3:+11727087 | Msa0442250:three_prime_UTR |
| GGTGTGGAAGTTGTGGGACT+GGG | 0.461443 | 3_3:+11725049 | Msa0442250:CDS |
| CCAGGCCATAGCTCGTTGTA+TGG | 0.462389 | 3_3:+11725805 | Msa0442250:CDS |
| AAGTTGTTGTCTCGATGCTC+TGG | 0.463461 | 3_3:-11723980 | None:intergenic |
| TCATCAATCTGATCCATCTT+GGG | 0.464169 | 3_3:+11720335 | Msa0442250:CDS |
| AACAAAATAATCACCATATG+AGG | 0.466238 | 3_3:-11726967 | None:intergenic |
| GCATGTTTGCCAGGTTTGGC+AGG | 0.469643 | 3_3:+11725899 | Msa0442250:CDS |
| TGTTGTTCATGTGAAGATGT+TGG | 0.470416 | 3_3:-11720123 | None:intergenic |
| AAATATGTTTGAATGACAGC+TGG | 0.475153 | 3_3:-11722061 | None:intergenic |
| TTGATTTCTCGGCAGGATGC+AGG | 0.481990 | 3_3:+11723709 | Msa0442250:intron |
| TCAACTACCAAGTGACATCT+TGG | 0.482364 | 3_3:+11720200 | Msa0442250:CDS |
| TGCTGTTTGTGCTGTCAACC+AGG | 0.484017 | 3_3:+11724044 | Msa0442250:CDS |
| AATGTAACTTACCATCATAA+TGG | 0.484345 | 3_3:-11723775 | None:intergenic |
| TATTCCAGCCTCCCTAAAGT+TGG | 0.484385 | 3_3:-11727032 | None:intergenic |
| TCATTTCAAGCTACAGGAGA+TGG | 0.489367 | 3_3:+11725327 | Msa0442250:CDS |
| ATGGAGAATTGCCATTCTGC+AGG | 0.493934 | 3_3:+11725824 | Msa0442250:CDS |
| TCCAGCCTCCCTAAAGTTGG+AGG | 0.502536 | 3_3:-11727029 | None:intergenic |
| TTGAGTCGCCAATGTATACT+AGG | 0.505523 | 3_3:+11722853 | Msa0442250:CDS |
| GCCAAAGGATCTGCAATTCA+CGG | 0.507616 | 3_3:-11722030 | None:intergenic |
| ATTGGTATAGAAACAATAAC+CGG | 0.510568 | 3_3:-11723749 | None:intergenic |
| AATAGTACTAAGAAAATTGT+GGG | 0.510585 | 3_3:+11720080 | Msa0442250:CDS |
| AGAAGTTCCGCCAGAAGCCT+AGG | 0.514084 | 3_3:+11726939 | Msa0442250:CDS |
| CAAGCATCATTTCAAGCTAC+AGG | 0.515742 | 3_3:+11725321 | Msa0442250:CDS |
| ATTTCCTGGTTCTTGGTGTG+TGG | 0.517934 | 3_3:+11726910 | Msa0442250:CDS |
| AAACATTTACCTGCCAAACC+TGG | 0.518419 | 3_3:-11725908 | None:intergenic |
| CCATACAACGAGCTATGGCC+TGG | 0.521337 | 3_3:-11725805 | None:intergenic |
| TAAGGTCGGTGTGGAAGTTG+TGG | 0.524103 | 3_3:+11725042 | Msa0442250:CDS |
| AAGGTCGGTGTGGAAGTTGT+GGG | 0.524892 | 3_3:+11725043 | Msa0442250:CDS |
| CAATAGTACTAAGAAAATTG+TGG | 0.529420 | 3_3:+11720079 | Msa0442250:CDS |
| TTGATGGGTCTAGAGATGAT+TGG | 0.531384 | 3_3:+11721976 | Msa0442250:intron |
| TATTTATGGTCAGAGAGCTC+AGG | 0.532621 | 3_3:+11722079 | Msa0442250:CDS |
| TGGTTCGGAGCAAAGATGAT+TGG | 0.533936 | 3_3:+11726432 | Msa0442250:CDS |
| CCAACCAAATTTGCAATAGC+CGG | 0.539236 | 3_3:-11722221 | None:intergenic |
| GAGCAAATATGCTTGTCCAT+CGG | 0.539547 | 3_3:+11722243 | Msa0442250:CDS |
| ATTTAGAATACTAACGGAAG+AGG | 0.542951 | 3_3:-11720399 | None:intergenic |
| TAATGGTAAAGTAATGCGTA+AGG | 0.544895 | 3_3:+11725024 | Msa0442250:CDS |
| GATTACCAGGTGACAACGAT+TGG | 0.546596 | 3_3:+11725846 | Msa0442250:CDS |
| TTGTACAGAAAGATTAGAGA+AGG | 0.552480 | 3_3:+11726332 | Msa0442250:intron |
| CACCATATGAGGCCGAGCCT+AGG | 0.553488 | 3_3:-11726956 | None:intergenic |
| CAGCTGGGGCCTCTGGCCAA+AGG | 0.557706 | 3_3:-11722045 | None:intergenic |
| GGTGTCGATACGCAATGGTT+CGG | 0.557763 | 3_3:+11726417 | Msa0442250:CDS |
| CATTGCGTATCGACACCGTA+TGG | 0.558086 | 3_3:-11726411 | None:intergenic |
| ATACCAATATGCCATTATGA+TGG | 0.560403 | 3_3:+11723764 | Msa0442250:CDS |
| TTGTACCAATCGTTGTCACC+TGG | 0.561702 | 3_3:-11725851 | None:intergenic |
| ATTTGAACCAAGATGTCACT+TGG | 0.563145 | 3_3:-11720207 | None:intergenic |
| CTTCCTCCATACATGTCCAA+TGG | 0.567153 | 3_3:+11726369 | Msa0442250:CDS |
| AGGTATGACTCTAATTCCAT+TGG | 0.572150 | 3_3:-11726385 | None:intergenic |
| ATTCTCCATACAACGAGCTA+TGG | 0.573708 | 3_3:-11725810 | None:intergenic |
| AATATGTTTGAATGACAGCT+GGG | 0.574569 | 3_3:-11722060 | None:intergenic |
| AATATGATTGAAAATATCCA+AGG | 0.585942 | 3_3:+11727202 | Msa0442250:three_prime_UTR |
| TGGTTGACAGCACAAACAGC+AGG | 0.587707 | 3_3:-11724042 | None:intergenic |
| AATGTTGCAGATCGCCCCGA+TGG | 0.593723 | 3_3:-11722259 | None:intergenic |
| TTTAGAATACTAACGGAAGA+GGG | 0.595363 | 3_3:-11720398 | None:intergenic |
| CACCTGGTAATCCTGCAGAA+TGG | 0.600972 | 3_3:-11725835 | None:intergenic |
| TTCCGCCAGAAGCCTAGGCT+CGG | 0.603172 | 3_3:+11726944 | Msa0442250:CDS |
| CAGAATAATTTACACTATCG+AGG | 0.604138 | 3_3:-11727003 | None:intergenic |
| TGTTTACACTTTCAAAAGAG+CGG | 0.606191 | 3_3:+11725352 | Msa0442250:CDS |
| CCATCAATGATAATAGCACC+AGG | 0.611496 | 3_3:-11722104 | None:intergenic |
| TATGGCCTGGTGTAAACCTA+CGG | 0.612970 | 3_3:-11725792 | None:intergenic |
| TCTTGGTATAGGCAAGCCGT+AGG | 0.613936 | 3_3:+11725776 | Msa0442250:intron |
| GGCCGAGCCTAGGCTTCTGG+CGG | 0.615411 | 3_3:-11726946 | None:intergenic |
| GATCAGATTGATGAGTCTGA+AGG | 0.616079 | 3_3:-11720326 | None:intergenic |
| TGCGTATCGACACCGTATGG+AGG | 0.616580 | 3_3:-11726408 | None:intergenic |
| GAGGCTGGAATAATAGGACT+CGG | 0.619327 | 3_3:+11727043 | Msa0442250:three_prime_UTR |
| AGAGTCATACCTCCTCCATA+CGG | 0.619890 | 3_3:+11726396 | Msa0442250:CDS |
| TGCACCCTCCAACTTTAGGG+AGG | 0.623496 | 3_3:+11727024 | Msa0442250:three_prime_UTR |
| GGTAAAGTAATGCGTAAGGT+CGG | 0.623567 | 3_3:+11725028 | Msa0442250:CDS |
| ATTGCAGATCCTTTGGCCAG+AGG | 0.623599 | 3_3:+11722036 | Msa0442250:CDS |
| TTGCCGTTGCCGTTGCCGTG+TGG | 0.626945 | 3_3:+11720159 | Msa0442250:CDS |
| TCACCACACGGCAACGGCAA+CGG | 0.632324 | 3_3:-11720162 | None:intergenic |
| TGTCGAAGCCTAGTATACAT+TGG | 0.632551 | 3_3:-11722861 | None:intergenic |
| CCAGCCTCCCTAAAGTTGGA+GGG | 0.636770 | 3_3:-11727028 | None:intergenic |
| AGGAACATTCAAGTCGAACA+GGG | 0.639526 | 3_3:-11724022 | None:intergenic |
| ACTTACACTCCAGCAAGATG+TGG | 0.640629 | 3_3:-11725402 | None:intergenic |
| ATTCCATTGGACATGTATGG+AGG | 0.644464 | 3_3:-11726372 | None:intergenic |
| GTATCGACACCGTATGGAGG+AGG | 0.645267 | 3_3:-11726405 | None:intergenic |
| TGTATGGAGGAAGTAAGCCA+TGG | 0.649099 | 3_3:-11726359 | None:intergenic |
| CATACGGTGTCGATACGCAA+TGG | 0.653299 | 3_3:+11726412 | Msa0442250:CDS |
| CCCATATCACCACACGGCAA+CGG | 0.655566 | 3_3:-11720168 | None:intergenic |
| AGATTAGAGAAGGAACTCCA+TGG | 0.658596 | 3_3:+11726342 | Msa0442250:CDS |
| GCAAATATGCTTGTCCATCG+GGG | 0.676281 | 3_3:+11722245 | Msa0442250:CDS |
| TTGGCACATGATGAAAACGC+GGG | 0.676324 | 3_3:-11719962 | None:intergenic |
| GCAAGCCGTAGGTTTACACC+AGG | 0.677496 | 3_3:+11725787 | Msa0442250:CDS |
| AGTAATGCGTAAGGTCGGTG+TGG | 0.683151 | 3_3:+11725033 | Msa0442250:CDS |
| TTTGGCACATGATGAAAACG+CGG | 0.698623 | 3_3:-11719963 | None:intergenic |
| ATATGTTTGAATGACAGCTG+GGG | 0.703396 | 3_3:-11722059 | None:intergenic |
| AATTCACCCATATCACCACA+CGG | 0.718407 | 3_3:-11720174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAAGATTTTTAATTTCA+TGG | + | chr3_3:11721495-11721514 | Msa0442250:intron | 10.0% |
| !!! | TTTTTAAATTTGTTAATTTC+AGG | + | chr3_3:11721522-11721541 | Msa0442250:intron | 10.0% |
| !!! | TTTTAAATTTGTTAATTTCA+GGG | + | chr3_3:11721523-11721542 | Msa0442250:intron | 10.0% |
| !!! | ATATTATATTTTAATTAGGA+GGG | - | chr3_3:11722756-11722775 | None:intergenic | 10.0% |
| !!! | TATATTATATTTTAATTAGG+AGG | - | chr3_3:11722757-11722776 | None:intergenic | 10.0% |
| !!! | TTATATATTTTGAAAAATGT+AGG | + | chr3_3:11724606-11724625 | Msa0442250:intron | 10.0% |
| !!! | AAGAAAATTTAGAATACTAA+CGG | - | chr3_3:11720408-11720427 | None:intergenic | 15.0% |
| !!! | TAAATTTTCTTCCTTTATTA+TGG | + | chr3_3:11720417-11720436 | Msa0442250:intron | 15.0% |
| !! | ATATTTGATTATACAAATGA+GGG | - | chr3_3:11720502-11720521 | None:intergenic | 15.0% |
| !! | AATATTTGATTATACAAATG+AGG | - | chr3_3:11720503-11720522 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTTTAGCTTTGA+TGG | + | chr3_3:11721872-11721891 | Msa0442250:intron | 15.0% |
| !!! | TTATTTTTTTTAGCTTTGAT+GGG | + | chr3_3:11721873-11721892 | Msa0442250:intron | 15.0% |
| !! | ATGTATTTGTGTTATAAATA+GGG | - | chr3_3:11722684-11722703 | None:intergenic | 15.0% |
| !! | TATGTATTTGTGTTATAAAT+AGG | - | chr3_3:11722685-11722704 | None:intergenic | 15.0% |
| !!! | GGTTATATATTGTTTTAATT+AGG | - | chr3_3:11722732-11722751 | None:intergenic | 15.0% |
| !!! | AAGTGTTTTTAGAAAATTAA+CGG | - | chr3_3:11723086-11723105 | None:intergenic | 15.0% |
| !! | CAAAATATTGTAAAAGAAAA+CGG | + | chr3_3:11723289-11723308 | Msa0442250:intron | 15.0% |
| !! | TATATTCTCTTAAGTTTATT+AGG | + | chr3_3:11723330-11723349 | Msa0442250:intron | 15.0% |
| !!! | TCCCTTATTTAAAAATATTA+GGG | - | chr3_3:11723396-11723415 | None:intergenic | 15.0% |
| !!! | TTCCCTTATTTAAAAATATT+AGG | - | chr3_3:11723397-11723416 | None:intergenic | 15.0% |
| !!! | TTAATTACAAATTTTCTGTT+TGG | + | chr3_3:11725238-11725257 | Msa0442250:intron | 15.0% |
| !!! | GTTTTTATATTTTCACTTAT+TGG | + | chr3_3:11725731-11725750 | Msa0442250:intron | 15.0% |
| !! | AACTATAGATATTATGATAT+AGG | + | chr3_3:11727087-11727106 | Msa0442250:three_prime_UTR | 15.0% |
| !!! | TATTGACATGTTTTAAGTTT+TGG | - | chr3_3:11720064-11720083 | None:intergenic | 20.0% |
| !! | AATAGTACTAAGAAAATTGT+GGG | + | chr3_3:11720080-11720099 | Msa0442250:CDS | 20.0% |
| !!! | TTCTTGCTATTTAATTTGAT+GGG | + | chr3_3:11720440-11720459 | Msa0442250:intron | 20.0% |
| !!! | GTGATTTGTTGTAAATTTAA+TGG | + | chr3_3:11720823-11720842 | Msa0442250:intron | 20.0% |
| !!! | ATTGTATGGATTAGAAATTT+TGG | + | chr3_3:11720908-11720927 | Msa0442250:intron | 20.0% |
| !!! | TTTTTGTTCGAGATAATTTT+AGG | + | chr3_3:11720975-11720994 | Msa0442250:intron | 20.0% |
| !! | TACAAATTGAAGAACTAAAT+TGG | - | chr3_3:11721144-11721163 | None:intergenic | 20.0% |
| !!! | AATTTAGTTCTTCAATTTGT+AGG | + | chr3_3:11721143-11721162 | Msa0442250:intron | 20.0% |
| !!! | ATTTAGTTCTTCAATTTGTA+GGG | + | chr3_3:11721144-11721163 | Msa0442250:intron | 20.0% |
| !!! | AATTTGTTGAAGACAATTTT+AGG | + | chr3_3:11721440-11721459 | Msa0442250:intron | 20.0% |
| !! | ACTAAATTTACTTATCCAAA+AGG | + | chr3_3:11721463-11721482 | Msa0442250:intron | 20.0% |
| !!! | TTTTAGTTCATAAAGTTGTA+GGG | - | chr3_3:11721564-11721583 | None:intergenic | 20.0% |
| !!! | TGTAAATGATTGTTATTTGA+TGG | + | chr3_3:11721633-11721652 | Msa0442250:intron | 20.0% |
| !!! | GTAAATGATTGTTATTTGAT+GGG | + | chr3_3:11721634-11721653 | Msa0442250:intron | 20.0% |
| !!! | TTATTTCAGCTACAATTTTA+TGG | + | chr3_3:11721795-11721814 | Msa0442250:intron | 20.0% |
| !!! | TACAATTTTATGGACTAAAA+TGG | + | chr3_3:11721805-11721824 | Msa0442250:intron | 20.0% |
| !!! | AACATTTTTGGTAATGATTT+TGG | + | chr3_3:11722276-11722295 | Msa0442250:intron | 20.0% |
| !!! | ATGTTTTGTTAGAATGAAAA+TGG | + | chr3_3:11722323-11722342 | Msa0442250:intron | 20.0% |
| !!! | TGTTTTAATTAGGACATTTA+TGG | - | chr3_3:11722722-11722741 | None:intergenic | 20.0% |
| !!! | TTTTTGCAACTATTTATAAC+AGG | + | chr3_3:11722886-11722905 | Msa0442250:CDS | 20.0% |
| !!! | AGTGTTTTTAGAAAATTAAC+GGG | - | chr3_3:11723085-11723104 | None:intergenic | 20.0% |
| !!! | TTCATTTTAAATTGCTAACA+TGG | + | chr3_3:11723132-11723151 | Msa0442250:intron | 20.0% |
| !! | AAAATGAAAACAAAAACATG+AGG | + | chr3_3:11723360-11723379 | Msa0442250:intron | 20.0% |
| !!! | AGCCCTAATATTTTTAAATA+AGG | + | chr3_3:11723391-11723410 | Msa0442250:intron | 20.0% |
| !!! | GCCCTAATATTTTTAAATAA+GGG | + | chr3_3:11723392-11723411 | Msa0442250:intron | 20.0% |
| !! | ATTCATTACGGATTTATTAT+AGG | + | chr3_3:11723465-11723484 | Msa0442250:intron | 20.0% |
| !! | AGAACAACATAAAAATGATT+AGG | - | chr3_3:11723667-11723686 | None:intergenic | 20.0% |
| !! | TTGCTTGATGTTTAATATAT+TGG | + | chr3_3:11723686-11723705 | Msa0442250:intron | 20.0% |
| !!! | TAATATATTGGTTGATTTCT+CGG | + | chr3_3:11723698-11723717 | Msa0442250:intron | 20.0% |
| !! | TGATTTACAAAGTTATTGTA+TGG | + | chr3_3:11723801-11723820 | Msa0442250:intron | 20.0% |
| !! | TTATTAACCAAAATTACATG+CGG | - | chr3_3:11723890-11723909 | None:intergenic | 20.0% |
| !! | AATGCTTAAATAAAAGGATA+TGG | - | chr3_3:11724198-11724217 | None:intergenic | 20.0% |
| !! | GTCATAAATGCTTAAATAAA+AGG | - | chr3_3:11724204-11724223 | None:intergenic | 20.0% |
| !! | TATGCAACTAAAGATAAATA+TGG | + | chr3_3:11724240-11724259 | Msa0442250:intron | 20.0% |
| !! | TAACAACAAATAAAAGAAGT+CGG | - | chr3_3:11724570-11724589 | None:intergenic | 20.0% |
| !! | TTACCATTAAAAACTGTAAA+AGG | - | chr3_3:11725013-11725032 | None:intergenic | 20.0% |
| !! | TGTACAATGATTGAAAATTT+AGG | - | chr3_3:11725123-11725142 | None:intergenic | 20.0% |
| !! | AGTAGTTAATACAATGAAAA+AGG | - | chr3_3:11725601-11725620 | None:intergenic | 20.0% |
| !! | GAAAATATAAAAACTAACAG+AGG | - | chr3_3:11725725-11725744 | None:intergenic | 20.0% |
| !! | TAAAAAATTCAGTTATTGCA+AGG | - | chr3_3:11726114-11726133 | None:intergenic | 20.0% |
| !! | CATAAACACGTAAATTTATA+AGG | - | chr3_3:11726173-11726192 | None:intergenic | 20.0% |
| !! | TAATCTTTCTGTACAAAATA+TGG | - | chr3_3:11726328-11726347 | None:intergenic | 20.0% |
| !!! | ACCTTGATGATAAATATTTT+AGG | + | chr3_3:11726473-11726492 | Msa0442250:intron | 20.0% |
| !! | ACCTAAAATATTTATCATCA+AGG | - | chr3_3:11726477-11726496 | None:intergenic | 20.0% |
| !!! | TAAATATTTTAGGTTCTCTT+TGG | + | chr3_3:11726483-11726502 | Msa0442250:intron | 20.0% |
| !! | AATATGATTGAAAATATCCA+AGG | + | chr3_3:11727202-11727221 | Msa0442250:three_prime_UTR | 20.0% |
| !!! | CATGTTTTAAGTTTTGGTTT+TGG | - | chr3_3:11720058-11720077 | None:intergenic | 25.0% |
| ! | CAATAGTACTAAGAAAATTG+TGG | + | chr3_3:11720079-11720098 | Msa0442250:CDS | 25.0% |
| !!! | GTTCAAATTTTGAGACTTTT+GGG | + | chr3_3:11720222-11720241 | Msa0442250:CDS | 25.0% |
| ! | AATAGCAAGAACCATAATAA+AGG | - | chr3_3:11720431-11720450 | None:intergenic | 25.0% |
| !!! | GTTCTTGCTATTTAATTTGA+TGG | + | chr3_3:11720439-11720458 | Msa0442250:intron | 25.0% |
| !!! | TGTGATTTTTTGATGATTTG+TGG | + | chr3_3:11720642-11720661 | Msa0442250:intron | 25.0% |
| !! | TTGCAATTAAGTGATTTTGA+TGG | + | chr3_3:11720695-11720714 | Msa0442250:intron | 25.0% |
| ! | GTTTAATCCTTCAAATTGTA+TGG | + | chr3_3:11720894-11720913 | Msa0442250:intron | 25.0% |
| ! | TTCTAATCCATACAATTTGA+AGG | - | chr3_3:11720904-11720923 | None:intergenic | 25.0% |
| !! | ATTAGATTGACTGATTCAAA+AGG | + | chr3_3:11720998-11721017 | Msa0442250:intron | 25.0% |
| !!! | TTTTTAGCTTTGATTGTTTG+TGG | + | chr3_3:11721067-11721086 | Msa0442250:intron | 25.0% |
| !!! | ATTGTTGTTTTGTACTTTGA+TGG | + | chr3_3:11721098-11721117 | Msa0442250:intron | 25.0% |
| !!! | TTGTTGTTTTGTACTTTGAT+GGG | + | chr3_3:11721099-11721118 | Msa0442250:intron | 25.0% |
| ! | TACAATTTAAAGGACTAAAC+TGG | - | chr3_3:11721347-11721366 | None:intergenic | 25.0% |
| ! | AGTTTAGTCCTTTAAATTGT+AGG | + | chr3_3:11721346-11721365 | Msa0442250:intron | 25.0% |
| ! | GTTTAGTCCTTTAAATTGTA+GGG | + | chr3_3:11721347-11721366 | Msa0442250:intron | 25.0% |
| !! | TTATATCACACTATTCCTTT+TGG | - | chr3_3:11721481-11721500 | None:intergenic | 25.0% |
| !! | TTTAGTTCATAAAGTTGTAG+GGG | - | chr3_3:11721563-11721582 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTCATAAAGTTGT+AGG | - | chr3_3:11721565-11721584 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTTGTGCTTTGAT+GGG | + | chr3_3:11721671-11721690 | Msa0442250:intron | 25.0% |
| ! | TTGCATAGTTTAAATATAGG+TGG | - | chr3_3:11721835-11721854 | None:intergenic | 25.0% |
| ! | CACTTGCATAGTTTAAATAT+AGG | - | chr3_3:11721838-11721857 | None:intergenic | 25.0% |
| ! | TTTAAACTATGCAAGTGAAT+TGG | + | chr3_3:11721841-11721860 | Msa0442250:intron | 25.0% |
| ! | CTGTCATTCAAACATATTTA+TGG | + | chr3_3:11722065-11722084 | Msa0442250:CDS | 25.0% |
| !!! | TTTTTGGTAATGATTTTGGT+TGG | + | chr3_3:11722280-11722299 | Msa0442250:intron | 25.0% |
| ! | TTTGTTAGAATGAAAATGGT+TGG | + | chr3_3:11722327-11722346 | Msa0442250:intron | 25.0% |
| !!! | CTGAAGTTTAAGTTTTTCAT+CGG | - | chr3_3:11722426-11722445 | None:intergenic | 25.0% |
| ! | AGAAACTGAAAAAACTGAAA+AGG | - | chr3_3:11722477-11722496 | None:intergenic | 25.0% |
| !!! | TTATATTTTAATTAGGAGGG+AGG | - | chr3_3:11722753-11722772 | None:intergenic | 25.0% |
| !! | TTTCCAAAACTTGATTGTTT+TGG | - | chr3_3:11723027-11723046 | None:intergenic | 25.0% |
| !!! | AAACAATCAAGTTTTGGAAA+AGG | + | chr3_3:11723027-11723046 | Msa0442250:intron | 25.0% |
| !! | ATTTTTAAATAAGGGAAGCT+CGG | + | chr3_3:11723400-11723419 | Msa0442250:intron | 25.0% |
| ! | ATTGGTATAGAAACAATAAC+CGG | - | chr3_3:11723752-11723771 | None:intergenic | 25.0% |
| ! | AATGTAACTTACCATCATAA+TGG | - | chr3_3:11723778-11723797 | None:intergenic | 25.0% |
| !!! | TGGTGTTATAATCATTAAAC+AGG | - | chr3_3:11724178-11724197 | None:intergenic | 25.0% |
| ! | TTTAGTTGCATATAAATCCT+TGG | - | chr3_3:11724232-11724251 | None:intergenic | 25.0% |
| ! | CAGGTAACAATTTGTAAATA+TGG | - | chr3_3:11724495-11724514 | None:intergenic | 25.0% |
| !!! | TGCATGTTTTTATTGCAAAT+TGG | + | chr3_3:11724533-11724552 | Msa0442250:intron | 25.0% |
| ! | AATCACAGTATTGCATTATT+AGG | - | chr3_3:11724853-11724872 | None:intergenic | 25.0% |
| ! | TTAAAAACTGTAAAAGGACA+AGG | - | chr3_3:11725007-11725026 | None:intergenic | 25.0% |
| !! | TGTCCTTTTACAGTTTTTAA+TGG | + | chr3_3:11725007-11725026 | Msa0442250:intron | 25.0% |
| ! | ATTATTGATGTTTCAGATCT+CGG | - | chr3_3:11725185-11725204 | None:intergenic | 25.0% |
| !! | GATCTGAAACATCAATAATA+AGG | + | chr3_3:11725186-11725205 | Msa0442250:intron | 25.0% |
| ! | ACAGATTGACCATAATATTA+AGG | + | chr3_3:11725451-11725470 | Msa0442250:intron | 25.0% |
| !! | TTTTGATATCTTAACCTAAC+TGG | + | chr3_3:11725495-11725514 | Msa0442250:intron | 25.0% |
| ! | AGTTAATACAATGAAAAAGG+AGG | - | chr3_3:11725598-11725617 | None:intergenic | 25.0% |
| !!! | TACAAATCTGTAGTTTTATC+AGG | + | chr3_3:11725869-11725888 | Msa0442250:CDS | 25.0% |
| ! | TAAATAATAACTTCTCGCAT+AGG | + | chr3_3:11726132-11726151 | Msa0442250:intron | 25.0% |
| ! | ATATTTATCATCAAGGTAGT+GGG | - | chr3_3:11726470-11726489 | None:intergenic | 25.0% |
| ! | AATATTTATCATCAAGGTAG+TGG | - | chr3_3:11726471-11726490 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGTTATTC+TGG | + | chr3_3:11726623-11726642 | Msa0442250:intron | 25.0% |
| ! | CTTATTTGCATTTACTTACA+TGG | - | chr3_3:11726684-11726703 | None:intergenic | 25.0% |
| ! | AACAAAATAATCACCATATG+AGG | - | chr3_3:11726970-11726989 | None:intergenic | 25.0% |
| ! | ACAATCTCAAAAGTGATATT+TGG | - | chr3_3:11727113-11727132 | None:intergenic | 25.0% |
| GAAGAATAGTTGGTTAAGTT+TGG | - | chr3_3:11719984-11720003 | None:intergenic | 30.0% | |
| !!! | GTTTTGGTTTTGGTATGATT+TGG | - | chr3_3:11720048-11720067 | None:intergenic | 30.0% |
| !!! | GGTTCAAATTTTGAGACTTT+TGG | + | chr3_3:11720221-11720240 | Msa0442250:CDS | 30.0% |
| ! | GCTGAAACTAATTTGATTTC+TGG | + | chr3_3:11720372-11720391 | Msa0442250:CDS | 30.0% |
| ! | TTTAGAATACTAACGGAAGA+GGG | - | chr3_3:11720401-11720420 | None:intergenic | 30.0% |
| ! | ATTTAGAATACTAACGGAAG+AGG | - | chr3_3:11720402-11720421 | None:intergenic | 30.0% |
| TTGATTATAATAGTGACCTG+AGG | + | chr3_3:11720614-11720633 | Msa0442250:intron | 30.0% | |
| TGATTATAATAGTGACCTGA+GGG | + | chr3_3:11720615-11720634 | Msa0442250:intron | 30.0% | |
| ! | TTTTGTGTTTTGTGCTTTGA+TGG | + | chr3_3:11720861-11720880 | Msa0442250:intron | 30.0% |
| ! | TTTGTGTTTTGTGCTTTGAT+GGG | + | chr3_3:11720862-11720881 | Msa0442250:intron | 30.0% |
| AATCTTCCAAATTTGTGCTT+TGG | + | chr3_3:11721024-11721043 | Msa0442250:intron | 30.0% | |
| !! | TGATTTGTTGCGAATTTGAT+GGG | + | chr3_3:11721271-11721290 | Msa0442250:intron | 30.0% |
| ATATTTGTGTGTGCTTTGAT+GGG | + | chr3_3:11721305-11721324 | Msa0442250:intron | 30.0% | |
| AATTTAAAGGACTAAACTGG+TGG | - | chr3_3:11721344-11721363 | None:intergenic | 30.0% | |
| !!! | GATTGTTTTTTGTGCTTTGA+TGG | + | chr3_3:11721670-11721689 | Msa0442250:intron | 30.0% |
| !!! | TTTTTAGCTTTGATGGGTTA+TGG | + | chr3_3:11721879-11721898 | Msa0442250:intron | 30.0% |
| !!! | GTGATTGTTATTTTGTGCTT+TGG | + | chr3_3:11721907-11721926 | Msa0442250:intron | 30.0% |
| AATATGTTTGAATGACAGCT+GGG | - | chr3_3:11722063-11722082 | None:intergenic | 30.0% | |
| AAATATGTTTGAATGACAGC+TGG | - | chr3_3:11722064-11722083 | None:intergenic | 30.0% | |
| AGTAACAGAACACAAGATAT+TGG | - | chr3_3:11722151-11722170 | None:intergenic | 30.0% | |
| !!! | CTTTTATCTGTTTTTGCTCA+AGG | + | chr3_3:11722193-11722212 | Msa0442250:intron | 30.0% |
| AATGAGAGTAAGGTAAAATG+AGG | - | chr3_3:11722393-11722412 | None:intergenic | 30.0% | |
| AAAACACTTCTGCAGATAAT+AGG | + | chr3_3:11722446-11722465 | Msa0442250:intron | 30.0% | |
| AGGACATTTATGGTTATATG+AGG | - | chr3_3:11722712-11722731 | None:intergenic | 30.0% | |
| ! | TGTCATTTCTTAAACACTCA+CGG | + | chr3_3:11722915-11722934 | Msa0442250:intron | 30.0% |
| AGATCTATGTAGACATGTAT+AGG | + | chr3_3:11722984-11723003 | Msa0442250:intron | 30.0% | |
| ! | TCACCAAAACAATCAAGTTT+TGG | + | chr3_3:11723021-11723040 | Msa0442250:intron | 30.0% |
| ! | AGAGTGCATTTTCAAAACAA+TGG | + | chr3_3:11723215-11723234 | Msa0442250:intron | 30.0% |
| ATTGTAAAAGAAAACGGTGA+AGG | + | chr3_3:11723295-11723314 | Msa0442250:intron | 30.0% | |
| AGAAATGTTCATGCTTAACA+TGG | + | chr3_3:11723612-11723631 | Msa0442250:intron | 30.0% | |
| TTCATGCTTAACATGGAAAA+AGG | + | chr3_3:11723619-11723638 | Msa0442250:intron | 30.0% | |
| !!! | ACAATAACCGGTTGATTTTT+TGG | - | chr3_3:11723740-11723759 | None:intergenic | 30.0% |
| ATACCAATATGCCATTATGA+TGG | + | chr3_3:11723764-11723783 | Msa0442250:CDS | 30.0% | |
| TTACCATCATAATGGCATAT+TGG | - | chr3_3:11723770-11723789 | None:intergenic | 30.0% | |
| CAACCAGGTAATATATCTTA+AGG | + | chr3_3:11724059-11724078 | Msa0442250:intron | 30.0% | |
| ! | AGGTCAAATTGATGACAATT+TGG | + | chr3_3:11724306-11724325 | Msa0442250:intron | 30.0% |
| !!! | CCTTTTTGTTTTGTCGTATT+CGG | - | chr3_3:11724440-11724459 | None:intergenic | 30.0% |
| TTACAAATTGTTACCTGAAG+AGG | + | chr3_3:11724498-11724517 | Msa0442250:intron | 30.0% | |
| ! | TCTGGAATAGCTGTTAATAT+AGG | + | chr3_3:11724661-11724680 | Msa0442250:CDS | 30.0% |
| CAAGAGAAAAGAAAACAGTA+GGG | - | chr3_3:11724720-11724739 | None:intergenic | 30.0% | |
| AACCGTTCAAAGAATATACA+CGG | - | chr3_3:11724888-11724907 | None:intergenic | 30.0% | |
| TTATTTGTTTCCACCTTTGT+TGG | + | chr3_3:11724963-11724982 | Msa0442250:intron | 30.0% | |
| TAATGGTAAAGTAATGCGTA+AGG | + | chr3_3:11725024-11725043 | Msa0442250:CDS | 30.0% | |
| GAAAGTTACAGGATTTCTTA+AGG | + | chr3_3:11725078-11725097 | Msa0442250:CDS | 30.0% | |
| TGTTTACACTTTCAAAAGAG+CGG | + | chr3_3:11725352-11725371 | Msa0442250:CDS | 30.0% | |
| ! | GTTTTGTATTTCTTGCAATG+CGG | + | chr3_3:11725423-11725442 | Msa0442250:intron | 30.0% |
| ATTGACCATAATATTAAGGC+AGG | + | chr3_3:11725455-11725474 | Msa0442250:intron | 30.0% | |
| TGTCAGATTAGTAAATGCTT+AGG | + | chr3_3:11725639-11725658 | Msa0442250:intron | 30.0% | |
| GCTTAGGTTATGAAAATCTT+TGG | + | chr3_3:11725655-11725674 | Msa0442250:intron | 30.0% | |
| GTTATGAAAATCTTTGGCTA+TGG | + | chr3_3:11725661-11725680 | Msa0442250:intron | 30.0% | |
| AATCTTTGGCTATGGTTAAT+TGG | + | chr3_3:11725669-11725688 | Msa0442250:intron | 30.0% | |
| TAAGCTTATGTTTCACTTCT+TGG | + | chr3_3:11725759-11725778 | Msa0442250:intron | 30.0% | |
| TATGTTTCACTTCTTGGTAT+AGG | + | chr3_3:11725765-11725784 | Msa0442250:intron | 30.0% | |
| !!! | AAATCTGTAGTTTTATCAGG+AGG | + | chr3_3:11725872-11725891 | Msa0442250:CDS | 30.0% |
| !! | AGTTAAATGAGAGCTTTGAA+AGG | + | chr3_3:11726197-11726216 | Msa0442250:intron | 30.0% |
| AAAAATCGTTGCAAGCTTAT+AGG | - | chr3_3:11726263-11726282 | None:intergenic | 30.0% | |
| ! | TATAAGCTTGCAACGATTTT+TGG | + | chr3_3:11726262-11726281 | Msa0442250:intron | 30.0% |
| TTGTACAGAAAGATTAGAGA+AGG | + | chr3_3:11726332-11726351 | Msa0442250:intron | 30.0% | |
| GCAAATAAGTCAACTAAAAC+AGG | + | chr3_3:11726695-11726714 | Msa0442250:intron | 30.0% | |
| CTATCTTATGATGAGTGTAT+TGG | + | chr3_3:11726745-11726764 | Msa0442250:intron | 30.0% | |
| CAGAATAATTTACACTATCG+AGG | - | chr3_3:11727006-11727025 | None:intergenic | 30.0% | |
| ! | GATTTGAAGTACTCGAAAAA+TGG | + | chr3_3:11727224-11727243 | Msa0442250:three_prime_UTR | 30.0% |
| GAAAGAGAGTGAAGAATAGT+TGG | - | chr3_3:11719994-11720013 | None:intergenic | 35.0% | |
| TGTTGTTCATGTGAAGATGT+TGG | - | chr3_3:11720126-11720145 | None:intergenic | 35.0% | |
| ATTTGAACCAAGATGTCACT+TGG | - | chr3_3:11720210-11720229 | None:intergenic | 35.0% | |
| ! | CTCAGTTTTGCAACTTCTTT+GGG | - | chr3_3:11720249-11720268 | None:intergenic | 35.0% |
| ! | ACTCAGTTTTGCAACTTCTT+TGG | - | chr3_3:11720250-11720269 | None:intergenic | 35.0% |
| CTGTGTCTGATAATCGTTTA+TGG | + | chr3_3:11720295-11720314 | Msa0442250:CDS | 35.0% | |
| TCATCAATCTGATCCATCTT+GGG | + | chr3_3:11720335-11720354 | Msa0442250:CDS | 35.0% | |
| AAAAACACAGAATCCCAAGA+TGG | - | chr3_3:11720351-11720370 | None:intergenic | 35.0% | |
| TGTATGTGTGTGATTGTGAT+TGG | + | chr3_3:11720469-11720488 | Msa0442250:intron | 35.0% | |
| ATTGCAAATTCGTGCTTTGA+TGG | + | chr3_3:11721221-11721240 | Msa0442250:intron | 35.0% | |
| !! | GTGATTTGTTGCGAATTTGA+TGG | + | chr3_3:11721270-11721289 | Msa0442250:intron | 35.0% |
| AAGCACACACAAATATCACT+TGG | - | chr3_3:11721301-11721320 | None:intergenic | 35.0% | |
| GATATTTGTGTGTGCTTTGA+TGG | + | chr3_3:11721304-11721323 | Msa0442250:intron | 35.0% | |
| GACTGATCCCTACAATTTAA+AGG | - | chr3_3:11721357-11721376 | None:intergenic | 35.0% | |
| AGATACCGTTAATTTCACTG+TGG | - | chr3_3:11721385-11721404 | None:intergenic | 35.0% | |
| !! | CAACTGTGCAAGTATTTTGA+TGG | + | chr3_3:11721603-11721622 | Msa0442250:intron | 35.0% |
| !! | GATTGTTATTTGATGGGTTG+TGG | + | chr3_3:11721640-11721659 | Msa0442250:intron | 35.0% |
| TACAATTGGAAGGACTAAAC+TGG | - | chr3_3:11721713-11721732 | None:intergenic | 35.0% | |
| AGTTTAGTCCTTCCAATTGT+AGG | + | chr3_3:11721712-11721731 | Msa0442250:intron | 35.0% | |
| GTTTAGTCCTTCCAATTGTA+GGG | + | chr3_3:11721713-11721732 | Msa0442250:intron | 35.0% | |
| AGATAACAGATCCCTACAAT+TGG | - | chr3_3:11721727-11721746 | None:intergenic | 35.0% | |
| ATTGTAGGGATCTGTTATCT+TGG | + | chr3_3:11721727-11721746 | Msa0442250:intron | 35.0% | |
| AAAACACAACACCAATCACT+TGG | - | chr3_3:11721958-11721977 | None:intergenic | 35.0% | |
| !!! | TGATTGGTGTTGTGTTTTGA+TGG | + | chr3_3:11721960-11721979 | Msa0442250:intron | 35.0% |
| !!! | GATTGGTGTTGTGTTTTGAT+GGG | + | chr3_3:11721961-11721980 | Msa0442250:intron | 35.0% |
| ATATGTTTGAATGACAGCTG+GGG | - | chr3_3:11722062-11722081 | None:intergenic | 35.0% | |
| ATCTTGTGTTCTGTTACTGA+TGG | + | chr3_3:11722153-11722172 | Msa0442250:intron | 35.0% | |
| !!! | TTATCTGTTTTTGCTCAAGG+CGG | + | chr3_3:11722196-11722215 | Msa0442250:intron | 35.0% |
| !! | TTGGAACTAGCTCTAAACAA+TGG | + | chr3_3:11722299-11722318 | Msa0442250:intron | 35.0% |
| TCGAAGTCAAAATGAGAGTA+AGG | - | chr3_3:11722403-11722422 | None:intergenic | 35.0% | |
| TGCAACTTTGTGATAGAAAC+TGG | + | chr3_3:11722509-11722528 | Msa0442250:intron | 35.0% | |
| CCAAGACTCTCAAATTTCTT+GGG | - | chr3_3:11722573-11722592 | None:intergenic | 35.0% | |
| TCCAAGACTCTCAAATTTCT+TGG | - | chr3_3:11722574-11722593 | None:intergenic | 35.0% | |
| CAACTCTTGAACATTTGGAA+GGG | - | chr3_3:11722602-11722621 | None:intergenic | 35.0% | |
| CTTCCAAATGTTCAAGAGTT+GGG | + | chr3_3:11722601-11722620 | Msa0442250:intron | 35.0% | |
| CGGTTAATTGGTAAAGGATT+GGG | - | chr3_3:11722632-11722651 | None:intergenic | 35.0% | |
| TCGGTTAATTGGTAAAGGAT+TGG | - | chr3_3:11722633-11722652 | None:intergenic | 35.0% | |
| AAGTTATGAGACAAGGGAAA+GGG | - | chr3_3:11722661-11722680 | None:intergenic | 35.0% | |
| ATAGGGAAGTTATGAGACAA+GGG | - | chr3_3:11722667-11722686 | None:intergenic | 35.0% | |
| AATAGGGAAGTTATGAGACA+AGG | - | chr3_3:11722668-11722687 | None:intergenic | 35.0% | |
| !! | CGGTTCTGAGTATTGAAATA+AGG | - | chr3_3:11722789-11722808 | None:intergenic | 35.0% |
| CAAATTCCTGCACATCAAAA+AGG | - | chr3_3:11722827-11722846 | None:intergenic | 35.0% | |
| ! | CTTTTTGATGTGCAGGAATT+TGG | + | chr3_3:11722825-11722844 | Msa0442250:intron | 35.0% |
| CATTTGTGATAGAGAGAAGA+TGG | + | chr3_3:11723178-11723197 | Msa0442250:intron | 35.0% | |
| GAAAACGGTGAAGGAAATAT+TGG | + | chr3_3:11723304-11723323 | Msa0442250:intron | 35.0% | |
| GGGAAGGTTTAGATTCATTA+CGG | + | chr3_3:11723453-11723472 | Msa0442250:intron | 35.0% | |
| GTTTACCTTCCATTTGTAAG+AGG | + | chr3_3:11723490-11723509 | Msa0442250:intron | 35.0% | |
| TGAAATCAGCCTCTTACAAA+TGG | - | chr3_3:11723502-11723521 | None:intergenic | 35.0% | |
| AATTGTCACCATGTGCTAAA+AGG | - | chr3_3:11723541-11723560 | None:intergenic | 35.0% | |
| TAGTATCAGATGAAGAGTCT+TGG | - | chr3_3:11723576-11723595 | None:intergenic | 35.0% | |
| GGTGAAACCAAAAAATCAAC+CGG | + | chr3_3:11723730-11723749 | Msa0442250:CDS | 35.0% | |
| CTGTTATATGTTCATCACCA+TGG | - | chr3_3:11723836-11723855 | None:intergenic | 35.0% | |
| ! | TCATCTTCCGCATGTAATTT+TGG | + | chr3_3:11723880-11723899 | Msa0442250:intron | 35.0% |
| ! | TTGTTGCTTATATGATTCCC+TGG | + | chr3_3:11723919-11723938 | Msa0442250:intron | 35.0% |
| ! | CTGATTCAGTATCTGGAATT+AGG | - | chr3_3:11723960-11723979 | None:intergenic | 35.0% |
| CCACCTTAAGATATATTACC+TGG | - | chr3_3:11724065-11724084 | None:intergenic | 35.0% | |
| CCAGGTAATATATCTTAAGG+TGG | + | chr3_3:11724062-11724081 | Msa0442250:intron | 35.0% | |
| AGGTAAGTAAAGTCAGACTA+AGG | - | chr3_3:11724376-11724395 | None:intergenic | 35.0% | |
| CCGAATACGACAAAACAAAA+AGG | + | chr3_3:11724437-11724456 | Msa0442250:intron | 35.0% | |
| GCAAGAGAAAAGAAAACAGT+AGG | - | chr3_3:11724721-11724740 | None:intergenic | 35.0% | |
| CTCAATATGTTGTCTAAGTG+TGG | + | chr3_3:11724810-11724829 | Msa0442250:intron | 35.0% | |
| CACCGTGTATATTCTTTGAA+CGG | + | chr3_3:11724883-11724902 | Msa0442250:intron | 35.0% | |
| TACATTTACACCACCAACAA+AGG | - | chr3_3:11724979-11724998 | None:intergenic | 35.0% | |
| AGCATTTACTAATCTGACAG+AGG | - | chr3_3:11725638-11725657 | None:intergenic | 35.0% | |
| TTTGGCTATGGTTAATTGGA+CGG | + | chr3_3:11725673-11725692 | Msa0442250:intron | 35.0% | |
| ATGGTTAATTGGACGGTATA+AGG | + | chr3_3:11725680-11725699 | Msa0442250:intron | 35.0% | |
| ! | ACTATAGCACTGAAAACTCT+TGG | + | chr3_3:11725997-11726016 | Msa0442250:intron | 35.0% |
| AGTTTATCCAAAAAGACTCG+TGG | - | chr3_3:11726052-11726071 | None:intergenic | 35.0% | |
| ! | TTTTGGCAAGTGAAGAAACT+TGG | + | chr3_3:11726279-11726298 | Msa0442250:intron | 35.0% |
| ! | TGGCCTAATTCTACTACTTT+TGG | + | chr3_3:11726299-11726318 | Msa0442250:intron | 35.0% |
| !! | GGCCTAATTCTACTACTTTT+GGG | + | chr3_3:11726300-11726319 | Msa0442250:intron | 35.0% |
| !! | GCCTAATTCTACTACTTTTG+GGG | + | chr3_3:11726301-11726320 | Msa0442250:intron | 35.0% |
| ACCCCAAAAGTAGTAGAATT+AGG | - | chr3_3:11726305-11726324 | None:intergenic | 35.0% | |
| CTAATTCCATTGGACATGTA+TGG | - | chr3_3:11726378-11726397 | None:intergenic | 35.0% | |
| AGGTATGACTCTAATTCCAT+TGG | - | chr3_3:11726388-11726407 | None:intergenic | 35.0% | |
| !! | TCTCACTAGAGTTTCTAGTA+AGG | + | chr3_3:11726854-11726873 | Msa0442250:intron | 35.0% |
| ! | TTTCGAGTACTTCAAATCCT+TGG | - | chr3_3:11727222-11727241 | None:intergenic | 35.0% |
| TTTGGCACATGATGAAAACG+CGG | - | chr3_3:11719966-11719985 | None:intergenic | 40.0% | |
| AATTCACCCATATCACCACA+CGG | - | chr3_3:11720177-11720196 | None:intergenic | 40.0% | |
| TCAACTACCAAGTGACATCT+TGG | + | chr3_3:11720200-11720219 | Msa0442250:CDS | 40.0% | |
| GATCAGATTGATGAGTCTGA+AGG | - | chr3_3:11720329-11720348 | None:intergenic | 40.0% | |
| CTCATCAATCTGATCCATCT+TGG | + | chr3_3:11720334-11720353 | Msa0442250:CDS | 40.0% | |
| AAAAAATCACACACTCCCTC+AGG | - | chr3_3:11720633-11720652 | None:intergenic | 40.0% | |
| CTTGCACCAAAGCACAAATT+TGG | - | chr3_3:11721033-11721052 | None:intergenic | 40.0% | |
| TTGGCGATTATCTTGTTGCA+CGG | - | chr3_3:11721125-11721144 | None:intergenic | 40.0% | |
| CGTTAATTTCACTGTGGAAG+CGG | - | chr3_3:11721379-11721398 | None:intergenic | 40.0% | |
| CGCTTCCACAGTGAAATTAA+CGG | + | chr3_3:11721377-11721396 | Msa0442250:intron | 40.0% | |
| TTGCACAGTTGCACGATAAT+TGG | - | chr3_3:11721594-11721613 | None:intergenic | 40.0% | |
| AACAGATCCCTACAATTGGA+AGG | - | chr3_3:11721723-11721742 | None:intergenic | 40.0% | |
| GTTGTAGTTGTCCAAGTGAT+TGG | + | chr3_3:11721944-11721963 | Msa0442250:intron | 40.0% | |
| ! | TTGATGGGTCTAGAGATGAT+TGG | + | chr3_3:11721976-11721995 | Msa0442250:intron | 40.0% |
| TATTTATGGTCAGAGAGCTC+AGG | + | chr3_3:11722079-11722098 | Msa0442250:CDS | 40.0% | |
| CCATCAATGATAATAGCACC+AGG | - | chr3_3:11722107-11722126 | None:intergenic | 40.0% | |
| !! | CCTGGTGCTATTATCATTGA+TGG | + | chr3_3:11722104-11722123 | Msa0442250:CDS | 40.0% |
| CCAACCAAATTTGCAATAGC+CGG | - | chr3_3:11722224-11722243 | None:intergenic | 40.0% | |
| GAGCAAATATGCTTGTCCAT+CGG | + | chr3_3:11722243-11722262 | Msa0442250:CDS | 40.0% | |
| AGCAAATATGCTTGTCCATC+GGG | + | chr3_3:11722244-11722263 | Msa0442250:CDS | 40.0% | |
| TGGAGAAAATTGACTGTGTC+TGG | + | chr3_3:11722347-11722366 | Msa0442250:intron | 40.0% | |
| TTCTATCACAAAGTTGCAGC+AGG | - | chr3_3:11722507-11722526 | None:intergenic | 40.0% | |
| CCCAAGAAATTTGAGAGTCT+TGG | + | chr3_3:11722570-11722589 | Msa0442250:intron | 40.0% | |
| CCAACTCTTGAACATTTGGA+AGG | - | chr3_3:11722603-11722622 | None:intergenic | 40.0% | |
| CCTTCCAAATGTTCAAGAGT+TGG | + | chr3_3:11722600-11722619 | Msa0442250:intron | 40.0% | |
| AGACCCAACTCTTGAACATT+TGG | - | chr3_3:11722607-11722626 | None:intergenic | 40.0% | |
| ! | GGGATTCGGTTAATTGGTAA+AGG | - | chr3_3:11722638-11722657 | None:intergenic | 40.0% |
| AGTTATGAGACAAGGGAAAG+GGG | - | chr3_3:11722660-11722679 | None:intergenic | 40.0% | |
| GAAGTTATGAGACAAGGGAA+AGG | - | chr3_3:11722662-11722681 | None:intergenic | 40.0% | |
| ! | AAAGGAGGCAAAGTGTTAGA+CGG | - | chr3_3:11722809-11722828 | None:intergenic | 40.0% |
| ATTCCTGCACATCAAAAAGG+AGG | - | chr3_3:11722824-11722843 | None:intergenic | 40.0% | |
| TTGAGTCGCCAATGTATACT+AGG | + | chr3_3:11722853-11722872 | Msa0442250:CDS | 40.0% | |
| TGTCGAAGCCTAGTATACAT+TGG | - | chr3_3:11722864-11722883 | None:intergenic | 40.0% | |
| !! | TTGCACTGAGAGAGTTGATA+CGG | - | chr3_3:11722952-11722971 | None:intergenic | 40.0% |
| !!! | TCAAGTTTTGGAAAAGGCAG+TGG | + | chr3_3:11723033-11723052 | Msa0442250:intron | 40.0% |
| GAGAAGATGGAAGACAAGTT+AGG | + | chr3_3:11723191-11723210 | Msa0442250:intron | 40.0% | |
| ATCAGCCTCTTACAAATGGA+AGG | - | chr3_3:11723498-11723517 | None:intergenic | 40.0% | |
| ! | ATATTGGTTGATTTCTCGGC+AGG | + | chr3_3:11723702-11723721 | Msa0442250:intron | 40.0% |
| ! | TTGTATGGTGATTTGTGCCA+TGG | + | chr3_3:11723816-11723835 | Msa0442250:intron | 40.0% |
| GGCAACAATTTGTAAAGCCA+GGG | - | chr3_3:11723939-11723958 | None:intergenic | 40.0% | |
| AGGCAACAATTTGTAAAGCC+AGG | - | chr3_3:11723940-11723959 | None:intergenic | 40.0% | |
| AGGAACATTCAAGTCGAACA+GGG | - | chr3_3:11724025-11724044 | None:intergenic | 40.0% | |
| ! | GTTACCTATTTACTGACTGC+TGG | + | chr3_3:11724109-11724128 | Msa0442250:intron | 40.0% |
| ATAGCCAGCAGTCAGTAAAT+AGG | - | chr3_3:11724116-11724135 | None:intergenic | 40.0% | |
| TGCATATAAATCCTTGGCAG+AGG | - | chr3_3:11724226-11724245 | None:intergenic | 40.0% | |
| GTCTGACTTTACTTACCTAC+CGG | + | chr3_3:11724378-11724397 | Msa0442250:intron | 40.0% | |
| ! | CTGATAATCTAGAGTTTGGC+CGG | - | chr3_3:11724400-11724419 | None:intergenic | 40.0% |
| ACAATCACATTCACCTCTTC+AGG | - | chr3_3:11724514-11724533 | None:intergenic | 40.0% | |
| TATGCTGCAAAACGAACTTC+TGG | + | chr3_3:11724643-11724662 | Msa0442250:CDS | 40.0% | |
| GTGTGGTACAACGTTGATAT+TGG | + | chr3_3:11724827-11724846 | Msa0442250:intron | 40.0% | |
| TTTGTTTCCACCTTTGTTGG+TGG | + | chr3_3:11724966-11724985 | Msa0442250:intron | 40.0% | |
| ATTTACACCACCAACAAAGG+TGG | - | chr3_3:11724976-11724995 | None:intergenic | 40.0% | |
| AAACTGTAAAAGGACAAGGC+AGG | - | chr3_3:11725003-11725022 | None:intergenic | 40.0% | |
| GGTAAAGTAATGCGTAAGGT+CGG | + | chr3_3:11725028-11725047 | Msa0442250:CDS | 40.0% | |
| ATTGATGTTTCAGATCTCGG+AGG | - | chr3_3:11725182-11725201 | None:intergenic | 40.0% | |
| CAAGCATCATTTCAAGCTAC+AGG | + | chr3_3:11725321-11725340 | Msa0442250:CDS | 40.0% | |
| TCATTTCAAGCTACAGGAGA+TGG | + | chr3_3:11725327-11725346 | Msa0442250:CDS | 40.0% | |
| TTATTCAAGCCACATCTTGC+TGG | + | chr3_3:11725393-11725412 | Msa0442250:CDS | 40.0% | |
| GACCATAATATTAAGGCAGG+CGG | + | chr3_3:11725458-11725477 | Msa0442250:intron | 40.0% | |
| ATCCGCCTGCCTTAATATTA+TGG | - | chr3_3:11725463-11725482 | None:intergenic | 40.0% | |
| TGCAATCAGTCTATCCAGTT+AGG | - | chr3_3:11725512-11725531 | None:intergenic | 40.0% | |
| AATCTTAGATCCAACGAGCT+TGG | + | chr3_3:11725567-11725586 | Msa0442250:intron | 40.0% | |
| ATTCTCCATACAACGAGCTA+TGG | - | chr3_3:11725813-11725832 | None:intergenic | 40.0% | |
| AAACATTTACCTGCCAAACC+TGG | - | chr3_3:11725911-11725930 | None:intergenic | 40.0% | |
| ! | TTCCATTCCACGAGTCTTTT+TGG | + | chr3_3:11726042-11726061 | Msa0442250:intron | 40.0% |
| ATCCAAAAAGACTCGTGGAA+TGG | - | chr3_3:11726047-11726066 | None:intergenic | 40.0% | |
| AGATTAGAGAAGGAACTCCA+TGG | + | chr3_3:11726342-11726361 | Msa0442250:CDS | 40.0% | |
| ATTCCATTGGACATGTATGG+AGG | - | chr3_3:11726375-11726394 | None:intergenic | 40.0% | |
| TTTAGGGAGGCTGGAATAAT+AGG | + | chr3_3:11727037-11727056 | Msa0442250:three_prime_UTR | 40.0% | |
| TTGGCACATGATGAAAACGC+GGG | - | chr3_3:11719965-11719984 | None:intergenic | 45.0% | |
| ! | GTGCTTTGGTGCAAGTGAAT+TGG | + | chr3_3:11721038-11721057 | Msa0442250:intron | 45.0% |
| TCCGTGAATTGCAGATCCTT+TGG | + | chr3_3:11722029-11722048 | Msa0442250:CDS | 45.0% | |
| GCCAAAGGATCTGCAATTCA+CGG | - | chr3_3:11722033-11722052 | None:intergenic | 45.0% | |
| GGTTCCGGCTATTGCAAATT+TGG | + | chr3_3:11722217-11722236 | Msa0442250:CDS | 45.0% | |
| CCGGCTATTGCAAATTTGGT+TGG | + | chr3_3:11722221-11722240 | Msa0442250:CDS | 45.0% | |
| GCAAATATGCTTGTCCATCG+GGG | + | chr3_3:11722245-11722264 | Msa0442250:CDS | 45.0% | |
| ! | AAAGGGGGGATTCGGTTAAT+TGG | - | chr3_3:11722644-11722663 | None:intergenic | 45.0% |
| TTATGAGACAAGGGAAAGGG+GGG | - | chr3_3:11722658-11722677 | None:intergenic | 45.0% | |
| GTTATGAGACAAGGGAAAGG+GGG | - | chr3_3:11722659-11722678 | None:intergenic | 45.0% | |
| ! | TTGCCTCCTTTTTGATGTGC+AGG | + | chr3_3:11722818-11722837 | Msa0442250:intron | 45.0% |
| !! | TGCACTGAGAGAGTTGATAC+GGG | - | chr3_3:11722951-11722970 | None:intergenic | 45.0% |
| TAGAAAACTCCTGCCATGCA+GGG | + | chr3_3:11723426-11723445 | Msa0442250:intron | 45.0% | |
| ACCATGTGCTAAAAGGTCTC+TGG | - | chr3_3:11723534-11723553 | None:intergenic | 45.0% | |
| AAGAGTCTTGGCACAACTGT+TGG | - | chr3_3:11723564-11723583 | None:intergenic | 45.0% | |
| TTACATGCGGAAGATGAGCA+TGG | - | chr3_3:11723877-11723896 | None:intergenic | 45.0% | |
| AAGTTGTTGTCTCGATGCTC+TGG | - | chr3_3:11723983-11724002 | None:intergenic | 45.0% | |
| CAGGAACATTCAAGTCGAAC+AGG | - | chr3_3:11724026-11724045 | None:intergenic | 45.0% | |
| AGCATTTATGACCTCTGCCA+AGG | + | chr3_3:11724212-11724231 | Msa0442250:intron | 45.0% | |
| TCTGTAGTCTTTCACGTTGC+AGG | + | chr3_3:11724286-11724305 | Msa0442250:intron | 45.0% | |
| ! | TAATCTAGAGTTTGGCCGGT+AGG | - | chr3_3:11724396-11724415 | None:intergenic | 45.0% |
| CGGCCAAACTCTAGATTATC+AGG | + | chr3_3:11724398-11724417 | Msa0442250:intron | 45.0% | |
| ! | GGGCCTGATAATCTAGAGTT+TGG | - | chr3_3:11724404-11724423 | None:intergenic | 45.0% |
| ATTATCAGGCCCCTTTCTCT+GGG | + | chr3_3:11724412-11724431 | Msa0442250:intron | 45.0% | |
| TATTCGGTTCCCAGAGAAAG+GGG | - | chr3_3:11724424-11724443 | None:intergenic | 45.0% | |
| GTATTCGGTTCCCAGAGAAA+GGG | - | chr3_3:11724425-11724444 | None:intergenic | 45.0% | |
| AAAACAGTAGGGCGCATACT+TGG | - | chr3_3:11724709-11724728 | None:intergenic | 45.0% | |
| CTGGGAGATCTGAAAGTTAC+AGG | + | chr3_3:11725067-11725086 | Msa0442250:CDS | 45.0% | |
| ACTTACACTCCAGCAAGATG+TGG | - | chr3_3:11725405-11725424 | None:intergenic | 45.0% | |
| TATGGCCTGGTGTAAACCTA+CGG | - | chr3_3:11725795-11725814 | None:intergenic | 45.0% | |
| ATGGAGAATTGCCATTCTGC+AGG | + | chr3_3:11725824-11725843 | Msa0442250:CDS | 45.0% | |
| GATTACCAGGTGACAACGAT+TGG | + | chr3_3:11725846-11725865 | Msa0442250:CDS | 45.0% | |
| TTGTACCAATCGTTGTCACC+TGG | - | chr3_3:11725854-11725873 | None:intergenic | 45.0% | |
| AACTGCATGTTTGCCAGGTT+TGG | + | chr3_3:11725895-11725914 | Msa0442250:CDS | 45.0% | |
| TGTATGGAGGAAGTAAGCCA+TGG | - | chr3_3:11726362-11726381 | None:intergenic | 45.0% | |
| CTTCCTCCATACATGTCCAA+TGG | + | chr3_3:11726369-11726388 | Msa0442250:CDS | 45.0% | |
| AGAGTCATACCTCCTCCATA+CGG | + | chr3_3:11726396-11726415 | Msa0442250:CDS | 45.0% | |
| ! | TGGTTCGGAGCAAAGATGAT+TGG | + | chr3_3:11726432-11726451 | Msa0442250:CDS | 45.0% |
| TGTCCTGCAGCAAAGTAGAT+CGG | - | chr3_3:11726723-11726742 | None:intergenic | 45.0% | |
| GTACAGTTGAGCACATTTCC+TGG | + | chr3_3:11726896-11726915 | Msa0442250:intron | 45.0% | |
| ! | TGAGCACATTTCCTGGTTCT+TGG | + | chr3_3:11726903-11726922 | Msa0442250:CDS | 45.0% |
| ! | ATTTCCTGGTTCTTGGTGTG+TGG | + | chr3_3:11726910-11726929 | Msa0442250:CDS | 45.0% |
| ! | TTTTCCACACACCAAGAACC+AGG | - | chr3_3:11726917-11726936 | None:intergenic | 45.0% |
| ATTCTGCACCCTCCAACTTT+AGG | + | chr3_3:11727020-11727039 | Msa0442250:three_prime_UTR | 45.0% | |
| TTCTGCACCCTCCAACTTTA+GGG | + | chr3_3:11727021-11727040 | Msa0442250:three_prime_UTR | 45.0% | |
| TATTCCAGCCTCCCTAAAGT+TGG | - | chr3_3:11727035-11727054 | None:intergenic | 45.0% | |
| GAGGCTGGAATAATAGGACT+CGG | + | chr3_3:11727043-11727062 | Msa0442250:three_prime_UTR | 45.0% | |
| !!! | ATTAATATTAATTTGTATTT+TGG | - | chr3_3:11722537-11722556 | None:intergenic | 5.0% |
| !!! | TGTTATATTATATTTTAATT+AGG | - | chr3_3:11722760-11722779 | None:intergenic | 5.0% |
| !! | AATAATAAATTTAATTCATA+AGG | + | chr3_3:11724784-11724803 | Msa0442250:intron | 5.0% |
| ATTGCAGATCCTTTGGCCAG+AGG | + | chr3_3:11722036-11722055 | Msa0442250:CDS | 50.0% | |
| ! | GTTTTTGCTCAAGGCGGTTC+CGG | + | chr3_3:11722202-11722221 | Msa0442250:intron | 50.0% |
| ! | GGGGCGATCTGCAACATTTT+TGG | + | chr3_3:11722264-11722283 | Msa0442250:CDS | 50.0% |
| !! | GCACTGAGAGAGTTGATACG+GGG | - | chr3_3:11722950-11722969 | None:intergenic | 50.0% |
| CTAGAAAACTCCTGCCATGC+AGG | + | chr3_3:11723425-11723444 | Msa0442250:intron | 50.0% | |
| AACCTTCCCATAACCCTGCA+TGG | - | chr3_3:11723442-11723461 | None:intergenic | 50.0% | |
| ! | GCCAGAGACCTTTTAGCACA+TGG | + | chr3_3:11723530-11723549 | Msa0442250:intron | 50.0% |
| TTGATTTCTCGGCAGGATGC+AGG | + | chr3_3:11723709-11723728 | Msa0442250:intron | 50.0% | |
| ! | GCTCTGGCTGATTCAGTATC+TGG | - | chr3_3:11723967-11723986 | None:intergenic | 50.0% |
| TGGTTGACAGCACAAACAGC+AGG | - | chr3_3:11724045-11724064 | None:intergenic | 50.0% | |
| ! | TGCTGTTTGTGCTGTCAACC+AGG | + | chr3_3:11724044-11724063 | Msa0442250:CDS | 50.0% |
| GATTATCAGGCCCCTTTCTC+TGG | + | chr3_3:11724411-11724430 | Msa0442250:intron | 50.0% | |
| CGTATTCGGTTCCCAGAGAA+AGG | - | chr3_3:11724426-11724445 | None:intergenic | 50.0% | |
| ! | TTTTCTCCCTGTGCGTTGCA+TGG | + | chr3_3:11724906-11724925 | Msa0442250:intron | 50.0% |
| GAAGAACCATGCAACGCACA+GGG | - | chr3_3:11724915-11724934 | None:intergenic | 50.0% | |
| TGAAGAACCATGCAACGCAC+AGG | - | chr3_3:11724916-11724935 | None:intergenic | 50.0% | |
| AGTAATGCGTAAGGTCGGTG+TGG | + | chr3_3:11725033-11725052 | Msa0442250:CDS | 50.0% | |
| TAAGGTCGGTGTGGAAGTTG+TGG | + | chr3_3:11725042-11725061 | Msa0442250:CDS | 50.0% | |
| AAGGTCGGTGTGGAAGTTGT+GGG | + | chr3_3:11725043-11725062 | Msa0442250:CDS | 50.0% | |
| !! | CACTGTTCGCGCTTTGAAAG+AGG | + | chr3_3:11725141-11725160 | Msa0442250:CDS | 50.0% |
| TCTTGGTATAGGCAAGCCGT+AGG | + | chr3_3:11725776-11725795 | Msa0442250:intron | 50.0% | |
| TGCCATTCTGCAGGATTACC+AGG | + | chr3_3:11725833-11725852 | Msa0442250:CDS | 50.0% | |
| CACCTGGTAATCCTGCAGAA+TGG | - | chr3_3:11725838-11725857 | None:intergenic | 50.0% | |
| ! | CATTGCGTATCGACACCGTA+TGG | - | chr3_3:11726414-11726433 | None:intergenic | 50.0% |
| !! | CATACGGTGTCGATACGCAA+TGG | + | chr3_3:11726412-11726431 | Msa0442250:CDS | 50.0% |
| !! | GGTGTCGATACGCAATGGTT+CGG | + | chr3_3:11726417-11726436 | Msa0442250:CDS | 50.0% |
| ! | GTACCGATCTACTTTGCTGC+AGG | + | chr3_3:11726717-11726736 | Msa0442250:intron | 50.0% |
| CCCATATCACCACACGGCAA+CGG | - | chr3_3:11720171-11720190 | None:intergenic | 55.0% | |
| CCGTTGCCGTGTGGTGATAT+GGG | + | chr3_3:11720168-11720187 | Msa0442250:CDS | 55.0% | |
| AATGTTGCAGATCGCCCCGA+TGG | - | chr3_3:11722262-11722281 | None:intergenic | 55.0% | |
| GACAAGGGAAAGGGGGGATT+CGG | - | chr3_3:11722652-11722671 | None:intergenic | 55.0% | |
| ACTCCTGCCATGCAGGGTTA+TGG | + | chr3_3:11723432-11723451 | Msa0442250:intron | 55.0% | |
| CTCCTGCCATGCAGGGTTAT+GGG | + | chr3_3:11723433-11723452 | Msa0442250:intron | 55.0% | |
| TTCCCATAACCCTGCATGGC+AGG | - | chr3_3:11723438-11723457 | None:intergenic | 55.0% | |
| TGCCATGCAGGGTTATGGGA+AGG | + | chr3_3:11723437-11723456 | Msa0442250:intron | 55.0% | |
| GGTGTGGAAGTTGTGGGACT+GGG | + | chr3_3:11725049-11725068 | Msa0442250:CDS | 55.0% | |
| GGAGGAACTTCCAAGCTCGT+TGG | - | chr3_3:11725580-11725599 | None:intergenic | 55.0% | |
| GCAAGCCGTAGGTTTACACC+AGG | + | chr3_3:11725787-11725806 | Msa0442250:CDS | 55.0% | |
| CCATACAACGAGCTATGGCC+TGG | - | chr3_3:11725808-11725827 | None:intergenic | 55.0% | |
| CCAGGCCATAGCTCGTTGTA+TGG | + | chr3_3:11725805-11725824 | Msa0442250:CDS | 55.0% | |
| GGAGGAACTGCATGTTTGCC+AGG | + | chr3_3:11725890-11725909 | Msa0442250:CDS | 55.0% | |
| GCATGTTTGCCAGGTTTGGC+AGG | + | chr3_3:11725899-11725918 | Msa0442250:CDS | 55.0% | |
| ! | GTATCGACACCGTATGGAGG+AGG | - | chr3_3:11726408-11726427 | None:intergenic | 55.0% |
| ! | TGCGTATCGACACCGTATGG+AGG | - | chr3_3:11726411-11726430 | None:intergenic | 55.0% |
| AGAAGTTCCGCCAGAAGCCT+AGG | + | chr3_3:11726939-11726958 | Msa0442250:CDS | 55.0% | |
| ! | TGCACCCTCCAACTTTAGGG+AGG | + | chr3_3:11727024-11727043 | Msa0442250:three_prime_UTR | 55.0% |
| CCAGCCTCCCTAAAGTTGGA+GGG | - | chr3_3:11727031-11727050 | None:intergenic | 55.0% | |
| TCCAGCCTCCCTAAAGTTGG+AGG | - | chr3_3:11727032-11727051 | None:intergenic | 55.0% | |
| TCACCACACGGCAACGGCAA+CGG | - | chr3_3:11720165-11720184 | None:intergenic | 60.0% | |
| GCCGTTGCCGTGTGGTGATA+TGG | + | chr3_3:11720167-11720186 | Msa0442250:CDS | 60.0% | |
| TGAATGACAGCTGGGGCCTC+TGG | - | chr3_3:11722055-11722074 | None:intergenic | 60.0% | |
| GGTCAGAGAGCTCAGGTTCC+TGG | + | chr3_3:11722086-11722105 | Msa0442250:CDS | 60.0% | |
| CGGTGTGGAAGTTGTGGGAC+TGG | + | chr3_3:11725048-11725067 | Msa0442250:CDS | 60.0% | |
| TTCCGCCAGAAGCCTAGGCT+CGG | + | chr3_3:11726944-11726963 | Msa0442250:CDS | 60.0% | |
| AGCCTAGGCTCGGCCTCATA+TGG | + | chr3_3:11726954-11726973 | Msa0442250:CDS | 60.0% | |
| CACCATATGAGGCCGAGCCT+AGG | - | chr3_3:11726959-11726978 | None:intergenic | 60.0% | |
| ! | CCCTCCAACTTTAGGGAGGC+TGG | + | chr3_3:11727028-11727047 | Msa0442250:three_prime_UTR | 60.0% |
| TTGCCGTTGCCGTTGCCGTG+TGG | + | chr3_3:11720159-11720178 | Msa0442250:CDS | 65.0% | |
| TGAGGCCGAGCCTAGGCTTC+TGG | - | chr3_3:11726952-11726971 | None:intergenic | 65.0% | |
| CAGCTGGGGCCTCTGGCCAA+AGG | - | chr3_3:11722048-11722067 | None:intergenic | 70.0% | |
| GGCCGAGCCTAGGCTTCTGG+CGG | - | chr3_3:11726949-11726968 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11719948 | 11727256 | 11719948 | ID=Msa0442250;Name=Msa0442250 |
| chr3_3 | mRNA | 11719948 | 11727256 | 11719948 | ID=Msa0442250-mRNA-1;Parent=Msa0442250;Name=Msa0442250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=127|0.90|0.91|1|1|1|12|277|491 |
| chr3_3 | exon | 11719948 | 11720406 | 11719948 | ID=Msa0442250-mRNA-1:exon:2475;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11721989 | 11722125 | 11721989 | ID=Msa0442250-mRNA-1:exon:2476;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11722215 | 11722285 | 11722215 | ID=Msa0442250-mRNA-1:exon:2477;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11722840 | 11722907 | 11722840 | ID=Msa0442250-mRNA-1:exon:2478;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11723724 | 11723785 | 11723724 | ID=Msa0442250-mRNA-1:exon:2479;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11723968 | 11724065 | 11723968 | ID=Msa0442250-mRNA-1:exon:2480;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11724628 | 11724709 | 11724628 | ID=Msa0442250-mRNA-1:exon:2481;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11725020 | 11725162 | 11725020 | ID=Msa0442250-mRNA-1:exon:2482;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11725267 | 11725418 | 11725267 | ID=Msa0442250-mRNA-1:exon:2483;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11725787 | 11725920 | 11725787 | ID=Msa0442250-mRNA-1:exon:2484;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11726340 | 11726458 | 11726340 | ID=Msa0442250-mRNA-1:exon:2485;Parent=Msa0442250-mRNA-1 |
| chr3_3 | exon | 11726902 | 11727256 | 11726902 | ID=Msa0442250-mRNA-1:exon:2486;Parent=Msa0442250-mRNA-1 |
| chr3_3 | five_prime_UTR | 11719948 | 11720074 | 11719948 | ID=Msa0442250-mRNA-1:five_prime_utr;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11720075 | 11720406 | 11720075 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11721989 | 11722125 | 11721989 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11722215 | 11722285 | 11722215 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11722840 | 11722907 | 11722840 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11723724 | 11723785 | 11723724 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11723968 | 11724065 | 11723968 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11724628 | 11724709 | 11724628 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11725020 | 11725162 | 11725020 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11725267 | 11725418 | 11725267 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11725787 | 11725920 | 11725787 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11726340 | 11726458 | 11726340 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | CDS | 11726902 | 11726979 | 11726902 | ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1 |
| chr3_3 | three_prime_UTR | 11726980 | 11727256 | 11726980 | ID=Msa0442250-mRNA-1:three_prime_utr;Parent=Msa0442250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
