AlfalfaGEDB | Msa0442250

M. sativa cultivar zhongmu-4 / Msa0442250

KEGG: K16616
GO: GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071840
PFAM: PF00646.36

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442250	XP_003598309.1	93.483	491	12	2	1	491	1	471	0.0	935

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442250	sp\|Q9FKT0\|ARP8_ARATH	63.190	489	156	6	3	487	1	469	0.0	633

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442250	G7J0F5	93.483	491	12	2	1	491	1	471	0.0	935

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038020	Msa0442250	0.801411	9.118940e-49	-8.615850e-47
Msa0050730	Msa0442250	0.824323	8.590432e-54	-8.615850e-47
Msa0050760	Msa0442250	0.820280	7.454104e-53	-8.615850e-47
Msa0085720	Msa0442250	0.834712	2.557643e-56	-8.615850e-47
Msa0175050	Msa0442250	0.814491	1.499721e-51	-8.615850e-47
Msa0223290	Msa0442250	0.802359	5.823011e-49	-8.615850e-47
Msa0243690	Msa0442250	0.815884	7.352352e-52	-8.615850e-47
Msa0250670	Msa0442250	0.802926	4.448656e-49	-8.615850e-47
Msa0289400	Msa0442250	0.811385	7.189829e-51	-8.615850e-47
Msa0312310	Msa0442250	0.803098	4.100326e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442250	MtrunA17_Chr3g0080021	93.483	491	12	2	1	491	1	471	0.0	935
Msa0442250	MtrunA17_Chr8g0369101	66.129	496	144	6	1	491	1	477	0.0	656
Msa0442250	MtrunA17_Chr7g0223901	31.313	297	180	9	199	487	91	371	5.31e-42	154
Msa0442250	MtrunA17_Chr6g0448881	29.966	297	184	9	199	487	91	371	7.53e-41	150
Msa0442250	MtrunA17_Chr2g0328091	30.640	297	182	9	199	487	91	371	1.01e-40	150
Msa0442250	MtrunA17_Chr1g0175391	30.640	297	182	9	199	487	91	371	5.10e-40	148
Msa0442250	MtrunA17_Chr2g0278591	31.228	285	172	9	199	475	91	359	7.07e-40	148
Msa0442250	MtrunA17_Chr3g0129641	30.976	297	181	9	199	487	91	371	1.19e-39	147
Msa0442250	MtrunA17_Chr7g0258721	30.303	297	183	9	199	487	91	371	1.85e-39	147
Msa0442250	MtrunA17_Chr7g0224401	26.351	296	178	11	201	474	92	369	1.39e-21	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0442250	AT5G56180.1	63.190	489	156	6	3	487	1	469	0.0	633
Msa0442250	AT5G56180.3	71.010	307	88	1	181	487	32	337	3.73e-168	478
Msa0442250	AT5G56180.2	62.760	384	119	6	3	382	1	364	3.87e-167	477
Msa0442250	AT3G12110.1	31.313	297	180	9	199	487	91	371	3.33e-42	154
Msa0442250	AT2G42090.1	30.952	294	176	10	199	483	80	355	9.59e-41	150
Msa0442250	AT3G53750.1	30.303	297	183	9	199	487	91	371	2.02e-40	149
Msa0442250	AT3G53750.2	30.303	297	183	9	199	487	91	371	2.02e-40	149
Msa0442250	AT2G37620.1	30.303	297	183	9	199	487	91	371	2.02e-40	149
Msa0442250	AT2G37620.3	30.303	297	183	9	199	487	91	371	2.02e-40	149
Msa0442250	AT2G37620.2	30.303	297	183	9	199	487	91	371	2.02e-40	149

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Find 126 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTACCTGCCAAACC+TGG	0.518419	3_3:-11725908	None:intergenic
AAATATGTTTGAATGACAGC+TGG	0.475153	3_3:-11722061	None:intergenic
AACAAAATAATCACCATATG+AGG	0.466238	3_3:-11726967	None:intergenic
AACTATAGATATTATGATAT+AGG	0.461050	3_3:+11727087	Msa0442250:three_prime_UTR
AACTGCATGTTTGCCAGGTT+TGG	0.340994	3_3:+11725895	Msa0442250:CDS
AAGGTCGGTGTGGAAGTTGT+GGG	0.524892	3_3:+11725043	Msa0442250:CDS
AAGTTGTTGTCTCGATGCTC+TGG	0.463461	3_3:-11723980	None:intergenic
AATAGTACTAAGAAAATTGT+GGG	0.510585	3_3:+11720080	Msa0442250:CDS
AATATGATTGAAAATATCCA+AGG	0.585942	3_3:+11727202	Msa0442250:three_prime_UTR
AATATGTTTGAATGACAGCT+GGG	0.574569	3_3:-11722060	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAATAGTTGGTTAAGTT+TGG	-	chr3_3:11719984-11720003	None:intergenic	30.0%
TTGATTATAATAGTGACCTG+AGG	+	chr3_3:11720614-11720633	Msa0442250:intron	30.0%
TGATTATAATAGTGACCTGA+GGG	+	chr3_3:11720615-11720634	Msa0442250:intron	30.0%
AATCTTCCAAATTTGTGCTT+TGG	+	chr3_3:11721024-11721043	Msa0442250:intron	30.0%
ATATTTGTGTGTGCTTTGAT+GGG	+	chr3_3:11721305-11721324	Msa0442250:intron	30.0%
AATTTAAAGGACTAAACTGG+TGG	-	chr3_3:11721344-11721363	None:intergenic	30.0%
AATATGTTTGAATGACAGCT+GGG	-	chr3_3:11722063-11722082	None:intergenic	30.0%
AAATATGTTTGAATGACAGC+TGG	-	chr3_3:11722064-11722083	None:intergenic	30.0%
AGTAACAGAACACAAGATAT+TGG	-	chr3_3:11722151-11722170	None:intergenic	30.0%
AATGAGAGTAAGGTAAAATG+AGG	-	chr3_3:11722393-11722412	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	11719948	11727256	11719948	ID=Msa0442250;Name=Msa0442250
chr3_3	mRNA	11719948	11727256	11719948	ID=Msa0442250-mRNA-1;Parent=Msa0442250;Name=Msa0442250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=127\|0.90\|0.91\|1\|1\|1\|12\|277\|491
chr3_3	exon	11719948	11720406	11719948	ID=Msa0442250-mRNA-1:exon:2475;Parent=Msa0442250-mRNA-1
chr3_3	exon	11721989	11722125	11721989	ID=Msa0442250-mRNA-1:exon:2476;Parent=Msa0442250-mRNA-1
chr3_3	exon	11722215	11722285	11722215	ID=Msa0442250-mRNA-1:exon:2477;Parent=Msa0442250-mRNA-1
chr3_3	exon	11722840	11722907	11722840	ID=Msa0442250-mRNA-1:exon:2478;Parent=Msa0442250-mRNA-1
chr3_3	exon	11723724	11723785	11723724	ID=Msa0442250-mRNA-1:exon:2479;Parent=Msa0442250-mRNA-1
chr3_3	exon	11723968	11724065	11723968	ID=Msa0442250-mRNA-1:exon:2480;Parent=Msa0442250-mRNA-1
chr3_3	exon	11724628	11724709	11724628	ID=Msa0442250-mRNA-1:exon:2481;Parent=Msa0442250-mRNA-1
chr3_3	exon	11725020	11725162	11725020	ID=Msa0442250-mRNA-1:exon:2482;Parent=Msa0442250-mRNA-1
chr3_3	exon	11725267	11725418	11725267	ID=Msa0442250-mRNA-1:exon:2483;Parent=Msa0442250-mRNA-1
chr3_3	exon	11725787	11725920	11725787	ID=Msa0442250-mRNA-1:exon:2484;Parent=Msa0442250-mRNA-1
chr3_3	exon	11726340	11726458	11726340	ID=Msa0442250-mRNA-1:exon:2485;Parent=Msa0442250-mRNA-1
chr3_3	exon	11726902	11727256	11726902	ID=Msa0442250-mRNA-1:exon:2486;Parent=Msa0442250-mRNA-1
chr3_3	five_prime_UTR	11719948	11720074	11719948	ID=Msa0442250-mRNA-1:five_prime_utr;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11720075	11720406	11720075	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11721989	11722125	11721989	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11722215	11722285	11722215	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11722840	11722907	11722840	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11723724	11723785	11723724	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11723968	11724065	11723968	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11724628	11724709	11724628	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11725020	11725162	11725020	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11725267	11725418	11725267	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11725787	11725920	11725787	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11726340	11726458	11726340	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	CDS	11726902	11726979	11726902	ID=Msa0442250-mRNA-1:cds;Parent=Msa0442250-mRNA-1
chr3_3	three_prime_UTR	11726980	11727256	11726980	ID=Msa0442250-mRNA-1:three_prime_utr;Parent=Msa0442250-mRNA-1

Gene Sequence

>Msa0442250

ATGTCAATAGTACTAAGAAAATTGTGGGAAATAATCTTAAAACGCAATCCAACATCTTCACATGAACAACAACAACAACAAATGTTGCCGTTGCCGTTGCCGTGTGGTGATATGGGTGAATTAGATCAACTACCAAGTGACATCTTGGTTCAAATTTTGAGACTTTTGGGTCCCAAAGAAGTTGCAAAACTGAGTGTGATTTGCAAGTCTTTGAAATTTTCTGTGTCTGATAATCGTTTATGGCTTCACTTCCTTCAGACTCATCAATCTGATCCATCTTGGGATTCTGTGTTTTTTGCTGAAACTAATTTGATTTCTGGTCACCCTCTTCCAGATGATTGGTATTTCATGAAATCAGATTTTGAGATTTCGTCCGTGAATTGCAGATCCTTTGGCCAGAGGCCCCAGCTGTCATTCAAACATATTTATGGTCAGAGAGCTCAGGTTCCTGGTGCTATTATCATTGATGGCGGTTCCGGCTATTGCAAATTTGGTTGGAGCAAATATGCTTGTCCATCGGGGCGATCTGCAACATTTTTGGAATTTGGCAACATTGAGTCGCCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCAAAAAATCAACCGGTTATTGTTTCTATACCAATATGCCATTATGATGATACTGAATCAGCCAGAGCATCGAGACAACAACTTAAAGAAGCAATTTATGCTTCCCTGTTCGACTTGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTGACATCAATAGTTCCAATTTTTAATGGTAAAGTAATGCGTAAGGTCGGTGTGGAAGTTGTGGGACTGGGAGATCTGAAAGTTACAGGATTTCTTAAGGAGAAGATGCAACAGAACAACCTAAATTTTCAATCATTGTACACTGTTCGCGCTTTGAAAGAGAATCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATTGAAAGAAAACACACAAGCATCATTTCAAGCTACAGGAGATGGATTGTTTACACTTTCAAAAGAGCGGTTTCAGACAGCTGAGATTTTATTCAAGCCACATCTTGCTGGAGTGCAAGCCGTAGGTTTACACCAGGCCATAGCTCGTTGTATGGAGAATTGCCATTCTGCAGGATTACCAGGTGACAACGATTGGTACAAATCTGTAGTTTTATCAGGAGGAACTGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATGGCTTACTTCCTCCATACATGTCCAATGGAATTAGAGTCATACCTCCTCCATACGGTGTCGATACGCAATGGTTCGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCTGGTTCTTGGTGTGTGGAAAAAAAGAAGTTCCGCCAGAAGCCTAGGCTCGGCCTCATATGGTGA

Protein sequence

>Msa0442250

MSIVLRKLWEIILKRNPTSSHEQQQQQMLPLPLPCGDMGELDQLPSDILVQILRLLGPKEVAKLSVICKSLKFSVSDNRLWLHFLQTHQSDPSWDSVFFAETNLISGHPLPDDWYFMKSDFEISSVNCRSFGQRPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPKNQPVIVSIPICHYDDTESARASRQQLKEAIYASLFDLNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSIVPIFNGKVMRKVGVEVVGLGDLKVTGFLKEKMQQNNLNFQSLYTVRALKENLCYVALDYEAELLKENTQASFQATGDGLFTLSKERFQTAEILFKPHLAGVQAVGLHQAIARCMENCHSAGLPGDNDWYKSVVLSGGTACLPGLAERLEKELHGLLPPYMSNGIRVIPPPYGVDTQWFGAKMIGNLSTFPGSWCVEKKKFRQKPRLGLIW*