AlfalfaGEDB | Msa0051460

M. sativa cultivar zhongmu-4 / Msa0051460

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009987 GO:0010035 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0023052 GO:0042221 GO:0042742 GO:0043207 GO:0044237 GO:0044464 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0080167 GO:0098542 GO:1901700
PFAM: PF05659.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051460	XP_003589251.2	94.256	853	20	3	1	853	1	824	0.0	1637

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051460	sp\|Q9SZA7\|DRL29_ARATH	51.220	861	367	14	1	853	1	816	0.0	826

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051460	G7I4I5	94.256	853	20	3	1	853	1	824	0.0	1637

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003560	Msa0051460	0.817458	3.263409e-52	-8.615850e-47
Msa0011160	Msa0051460	0.815836	7.537906e-52	-8.615850e-47
Msa0015100	Msa0051460	0.845466	3.990440e-59	-8.615850e-47
Msa0019520	Msa0051460	0.812434	4.248935e-51	-8.615850e-47
Msa0039330	Msa0051460	0.813012	3.174246e-51	-8.615850e-47
Msa0040580	Msa0051460	0.804638	1.962112e-49	-8.615850e-47
Msa0048100	Msa0051460	0.805412	1.351544e-49	-8.615850e-47
Msa0049770	Msa0051460	0.844273	8.372781e-59	-8.615850e-47
Msa0051200	Msa0051460	0.995014	3.180613e-212	-8.615850e-47
Msa0051460	Msa0058270	0.835684	1.454240e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051460	MtrunA17_Chr1g0153981	94.256	853	20	3	1	853	1	824	0.0	1637
Msa0051460	MtrunA17_Chr1g0153991	70.198	859	214	9	1	853	1	823	0.0	1159
Msa0051460	MtrunA17_Chr5g0402671	30.056	895	509	23	3	851	1	824	4.70e-116	372
Msa0051460	MtrunA17_Chr5g0402721	30.708	876	502	27	2	851	4	800	1.37e-108	352
Msa0051460	MtrunA17_Chr5g0402681	33.382	689	386	17	198	851	161	811	7.35e-108	350
Msa0051460	MtrunA17_Chr8g0374541	33.473	717	400	17	172	851	140	816	9.46e-108	350
Msa0051460	MtrunA17_Chr5g0402771	29.392	888	517	22	8	851	10	831	1.79e-104	342
Msa0051460	MtrunA17_Chr8g0374511	32.917	641	365	14	249	851	167	780	5.00e-101	331
Msa0051460	MtrunA17_Chr8g0374531	32.449	641	368	15	249	851	193	806	6.05e-101	332
Msa0051460	MtrunA17_Chr8g0374471	32.713	645	361	15	249	851	191	804	4.06e-99	327

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051460	AT4G33300.2	51.220	861	367	14	1	853	1	816	0.0	826
Msa0051460	AT4G33300.1	51.220	861	367	14	1	853	1	816	0.0	826
Msa0051460	AT5G04720.1	46.154	858	408	12	3	853	1	811	0.0	759
Msa0051460	AT1G33560.1	43.779	852	406	11	5	853	6	787	0.0	672
Msa0051460	AT5G47280.1	46.697	651	307	7	205	853	11	623	0.0	598
Msa0051460	AT5G66910.1	28.555	865	530	24	8	851	15	812	8.37e-93	310
Msa0051460	AT5G66900.1	28.622	849	524	25	11	843	16	798	2.14e-84	287
Msa0051460	AT5G66900.2	28.622	849	524	25	11	843	64	846	6.79e-84	287
Msa0051460	AT5G66890.1	33.498	406	245	11	446	839	8	400	5.96e-55	196
Msa0051460	AT5G66900.3	25.561	579	360	20	11	579	64	581	1.88e-33	137

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Find 174 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAAGGAGATGGTACT+TGG	0.432353	1_2:-5556769	Msa0051460:CDS
AAAGTTTCCATCCCTCAATT+TGG	0.261702	1_2:-5554382	Msa0051460:CDS
AAATTCTCATTAGCTGTTAA+AGG	0.239806	1_2:+5555936	None:intergenic
AACATCATCTAGAACAACCA+AGG	0.661732	1_2:+5556133	None:intergenic
AACGGAGAATCTCTGAGAAA+CGG	0.557853	1_2:+5557145	None:intergenic
AAGATTAATAACAATCTAGA+GGG	0.610299	1_2:-5554313	Msa0051460:CDS
AAGATTGGTGTGGGAGGTGG+TGG	0.282150	1_2:-5556898	Msa0051460:CDS
AAGATTTGGGGACACATAAT+AGG	0.360927	1_2:-5556230	Msa0051460:CDS
AAGCTCTGTGGCAATTTCTC+CGG	0.479466	1_2:+5557320	None:intergenic
AAGGGTTCGATCGGGTTGAT+AGG	0.437529	1_2:-5556948	Msa0051460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAACATGCTCTTAATGAAA+AGG	+	chr1_2:5554381-5554400	None:intergenic	30.0%
TTCGTGCATATTTGAATTGA+CGG	+	chr1_2:5554474-5554493	None:intergenic	30.0%
TATTTCACAATCTCCAAATG+TGG	-	chr1_2:5554745-5554764	Msa0051460:CDS	30.0%
ATCCAAATTATGTTGTTCCT+CGG	-	chr1_2:5554819-5554838	Msa0051460:CDS	30.0%
AAGTTGCAGTGAATATTGTT+GGG	+	chr1_2:5554982-5555001	None:intergenic	30.0%
TAAGTTGCAGTGAATATTGT+TGG	+	chr1_2:5554983-5555002	None:intergenic	30.0%
TAATGAGAATTTGGTCAAAC+AGG	-	chr1_2:5555087-5555106	Msa0051460:CDS	30.0%
AATAAGCTTGAAACAGCTTA+TGG	-	chr1_2:5555306-5555325	Msa0051460:CDS	30.0%
AAGAGCAAAATCTTGTAAAC+TGG	-	chr1_2:5555408-5555427	Msa0051460:CDS	30.0%
TACTGTTAGAATAACAATCC+TGG	+	chr1_2:5555599-5555618	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	5553670	5557364	5553670	ID=Msa0051460;Name=Msa0051460
chr1_2	mRNA	5553670	5557364	5553670	ID=Msa0051460-mRNA-1;Parent=Msa0051460;Name=Msa0051460-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0.5\|0.4\|1\|1\|1\|5\|126\|853
chr1_2	exon	5553670	5554622	5553670	ID=Msa0051460-mRNA-1:exon:1689;Parent=Msa0051460-mRNA-1
chr1_2	exon	5554732	5554937	5554732	ID=Msa0051460-mRNA-1:exon:1688;Parent=Msa0051460-mRNA-1
chr1_2	exon	5555046	5555434	5555046	ID=Msa0051460-mRNA-1:exon:1687;Parent=Msa0051460-mRNA-1
chr1_2	exon	5555926	5556381	5555926	ID=Msa0051460-mRNA-1:exon:1686;Parent=Msa0051460-mRNA-1
chr1_2	exon	5556681	5557364	5556681	ID=Msa0051460-mRNA-1:exon:1685;Parent=Msa0051460-mRNA-1
chr1_2	CDS	5556681	5557364	5556681	ID=Msa0051460-mRNA-1:cds;Parent=Msa0051460-mRNA-1
chr1_2	CDS	5555926	5556381	5555926	ID=Msa0051460-mRNA-1:cds;Parent=Msa0051460-mRNA-1
chr1_2	CDS	5555046	5555434	5555046	ID=Msa0051460-mRNA-1:cds;Parent=Msa0051460-mRNA-1
chr1_2	CDS	5554732	5554937	5554732	ID=Msa0051460-mRNA-1:cds;Parent=Msa0051460-mRNA-1
chr1_2	CDS	5553796	5554622	5553796	ID=Msa0051460-mRNA-1:cds;Parent=Msa0051460-mRNA-1
chr1_2	three_prime_UTR	5553670	5553795	5553670	ID=Msa0051460-mRNA-1:three_prime_utr;Parent=Msa0051460-mRNA-1

Gene Sequence

>Msa0051460

ATGGCACTGAACGATTTCTTCGCCGGAGAAATTGCCACAGAGCTTATAAAAATGCTCGTAAACATATCTAGAAAATCTCTTCTATGCAGAACAAGCGCAGAACAACTCATATCATACATCAATGAACTCCTCCCTACCATACAAGAAATCAAATACTCCGGCAATGAGTTACCGGAACAAAGACAGTTTCAGCTCGACCGTTTCTCAGAGATTCTCCGTTCGGGGGTCGAGCTTTCTCACAAAGTCTTGGCTTCTAGCAGATGGAACGTGTACAAGAATTTACAGCTTGCAAAGAAGATGGAGAAGCTTGAAAAGAACGTGTCAAGGTTTTTGCATGGTCCCATGCAAGCTCATATATTAGCTGACGTGCACCACACAAGGTATGAGATGGCTGAAGGGTTCGATCGGGTTGATAGGAAGTTGGAGAAGTATTTTGGTGAGATGAAGATTGGTGTGGGAGGTGGTGGGTGGGTGCAGGAAGCTGTGAGGTCTTGTATGGAGGAAGATGAGAATTTGATGGAGGGTAATTTTGGGAATTTGAGTTTGAGTGTTGGTTTGGATTTGGGGAAGAAGAAAGTTAAGGAGATGGTACTTGGAAGAGAGGATTTGTGGGTTGTTGGTATTCATGGGATTGGTGGATCTGGGAAAACTACTCTTGTTAAAGAGATTTGTAGAGATGAACAATCTCACAAGTGTGTTTTGTTGGAAAGAGTTTCAAAAGTTTTAACAGTTGCTACTTTTGTAGGCTATTTTAATGAGAGAATCTTGTTTTTGACTATTTCACAATCTCCAAATGTGGAGCAGCTCAGGACAAAGATTTGGGGACACATAATAGGAAACAGAAATTTGAATCCAAATTATGTTGTTCCTCGGTGGATACCGCAATTTGAATGCAGAAGTGAAGCTAGAACCTTGGTTGTTCTAGATGATGTTTGGTCACAAGCAGTTCTTGAACAGCTTGTGTGTAGAATACCAGGTTGCAAGTTTGTTGTTGTTTCCAGATTCCAATTCCCAACAATATTCACTGCAACTTATAAGGTTGAACTGTTGAGTGAAGAGGATGCACTTTCTTTGTTCTGTCACCATGCTTTTGGGCAGAAATCAATCCCTTTAACAGCTAATGAGAATTTGGTCAAACAGGATTGTTATTCTAACAGTATACAATGGAAACAGGTTGTGAGTGAGTGTGAAAATCTTCCATTGGCTCTTAAAGTGATTGGAGCTTCATTGAGAGATCAACCTGAAATGTTTTGGGAAAGTGTTAAAAACAGGTTATCTCAAGGCCAAAGTATTGGAGAATCTCATGAAATCAACCTAATTGAAAGAATGGCAATAAGTATCAACTACCTAAAGGAAGATATCAAAGAGTGCTTCTTAGACTTGTGTGCATTCCCTGAGGACAAAAAAATACCTCTAGATGCTCTCATCAATATGTGGGTTGAAATCCATGATATTGATGAGAAAGATGCTTTTGCTATTGTTGTTGAGCTCTCCAATAAAAATCTTCTCACCTTGGTGAAAGAAGCACGTGCTGGTGGCATGTACAGCAGTTGCTTTGAGATCTCAGTTACTCAACATGATGTGCTTAGAGACCTTGCAGTTAATTTGAGTCATCGCGAAAGTATTAATGAACGACGACGATTAGTTATGCCAAAACGAGAGAAAGGACTCCCAAAAGAGTGGTTGAGACACAAACACAAACCATTTGAAGCTCAAATTGTTTCAATTCACACAGGTGAAATGAAGGAAAGGGATTGGTGTAAACTTGAATTTCCTAAGGCTGAAGTTCTGATCATAAATTTCACATCTAAGGATTACTTTTTACCTCCTTTCATAGATAAAATGCCAAATTTGAGAGCTCTAATAGTAATAAACTATAGTGCATCATATGCATGCCTTCACAATGTTTCAGTTTTCAACAATTTGGCAAACTTGAGAAGCCTGTGGCTTGAAAAAGTTTCCATCCCTCAATTTGGAGGCATTCTCATGGAAAACTTAGGGAAGTTATTTATAGTTTCATGTAAGATTAATAACAATCTAGAGGGTAAAGAGGTAAATCTGTCTCAAATCTTTCCTAACCTCTCTGAGATCACTCTTGATCATTGTGATGATGTAACTTCTTTGCCCTCAAGCATTTGTAGGATACAATCACTCCAAAACTTGAGTCTCACCGAATGTCACAATTTGGAACAACTTCCTGTTGAATTAGGCGCGCTAAGATCTCTAGAGATACTCCGGTTATACGCGTGTCCGTTATTGAAAACACTTCCTCCTAGCGTTTGTGACATGACTCGATTGAAGTATATCGATGTTTCACAATGTGTTAACTTTTCATGTTTTCCTGAAGAGATTGGTAAACTAGTTAGCTTGGAAAAGATTGACATGAGGGAATGCTGTATGATTAGGAAAGTACCAAAATCTGCTATTTCATTGAAGTCTCTTAGGCTTGTAATTTGTGATGAGGAAGTGTTTGGTATGTGGAAAGATGTTGAGAAGGCCAAGCCAAATGTTCATATTCAAGTATCAGAACAGTGTTTTGATTTGGAATGGCTTAGTGAGTAA

Protein sequence

>Msa0051460

MALNDFFAGEIATELIKMLVNISRKSLLCRTSAEQLISYINELLPTIQEIKYSGNELPEQRQFQLDRFSEILRSGVELSHKVLASSRWNVYKNLQLAKKMEKLEKNVSRFLHGPMQAHILADVHHTRYEMAEGFDRVDRKLEKYFGEMKIGVGGGGWVQEAVRSCMEEDENLMEGNFGNLSLSVGLDLGKKKVKEMVLGREDLWVVGIHGIGGSGKTTLVKEICRDEQSHKCVLLERVSKVLTVATFVGYFNERILFLTISQSPNVEQLRTKIWGHIIGNRNLNPNYVVPRWIPQFECRSEARTLVVLDDVWSQAVLEQLVCRIPGCKFVVVSRFQFPTIFTATYKVELLSEEDALSLFCHHAFGQKSIPLTANENLVKQDCYSNSIQWKQVVSECENLPLALKVIGASLRDQPEMFWESVKNRLSQGQSIGESHEINLIERMAISINYLKEDIKECFLDLCAFPEDKKIPLDALINMWVEIHDIDEKDAFAIVVELSNKNLLTLVKEARAGGMYSSCFEISVTQHDVLRDLAVNLSHRESINERRRLVMPKREKGLPKEWLRHKHKPFEAQIVSIHTGEMKERDWCKLEFPKAEVLIINFTSKDYFLPPFIDKMPNLRALIVINYSASYACLHNVSVFNNLANLRSLWLEKVSIPQFGGILMENLGKLFIVSCKINNNLEGKEVNLSQIFPNLSEITLDHCDDVTSLPSSICRIQSLQNLSLTECHNLEQLPVELGALRSLEILRLYACPLLKTLPPSVCDMTRLKYIDVSQCVNFSCFPEEIGKLVSLEKIDMRECCMIRKVPKSAISLKSLRLVICDEEVFGMWKDVEKAKPNVHIQVSEQCFDLEWLSE*