AlfalfaGEDB | Msa0573580

M. sativa cultivar zhongmu-4 / Msa0573580

KEGG: K12194
GO: GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805
PFAM: PF03357.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573580	XP_003630667.2	99.550	222	1	0	1	222	1	222	1.99e-156	442

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573580	sp\|O82197\|VP321_ARATH	77.027	222	38	7	5	222	1	213	6.36e-97	284

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573580	G7LJN0	99.550	222	1	0	1	222	1	222	9.50e-157	442

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038020	Msa0573580	0.830461	2.899382e-55	-8.615850e-47
Msa0045550	Msa0573580	0.816326	5.858986e-52	-8.615850e-47
Msa0085720	Msa0573580	0.827059	1.927955e-54	-8.615850e-47
Msa0090390	Msa0573580	0.808155	3.557844e-50	-8.615850e-47
Msa0137870	Msa0573580	0.804728	1.879005e-49	-8.615850e-47
Msa0169820	Msa0573580	0.809549	1.791401e-50	-8.615850e-47
Msa0175050	Msa0573580	0.812764	3.597011e-51	-8.615850e-47
Msa0178510	Msa0573580	0.806567	7.725599e-50	-8.615850e-47
Msa0187490	Msa0573580	0.810728	9.979999e-51	-8.615850e-47
Msa0187830	Msa0573580	0.804997	1.651108e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573580	MtrunA17_Chr8g0389481	99.550	222	1	0	1	222	1	222	1.83e-160	442
Msa0573580	MtrunA17_Chr6g0487521	81.364	220	39	2	5	222	1	220	8.43e-106	304
Msa0573580	MtrunA17_Chr8g0389471	74.554	224	52	4	1	222	1	221	4.13e-89	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573580	AT2G19830.2	77.027	222	38	7	5	222	1	213	6.47e-98	284
Msa0573580	AT4G29160.1	77.828	221	44	4	5	222	1	219	8.00e-93	271
Msa0573580	AT4G29160.3	77.828	221	44	4	5	222	1	219	8.00e-93	271
Msa0573580	AT2G19830.1	79.293	198	31	5	28	222	4	194	6.74e-90	263
Msa0573580	AT4G29160.2	80.000	180	33	3	46	222	13	192	9.81e-83	244

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Find 109 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAAATAGAGAAAGCGA+AGG	0.628174	4_1:+76799488	None:intergenic
AAAGCTGCCAATTCTTCCTC+AGG	0.474769	4_1:+76795900	None:intergenic
AAATAAGAGAAAGCTTCTCT+CGG	0.531320	4_1:-76794519	Msa0573580:three_prime_UTR
AAATCAGCAGCTGCACCAAT+TGG	0.448641	4_1:+76796204	None:intergenic
AAATTAGGGTTTGGAATAAG+AGG	0.383107	4_1:+76799363	None:intergenic
AACCCACCCGGACAAACCGA+CGG	0.558273	4_1:+76794615	None:intergenic
AACGTTGCGAGTAGCATAGT+TGG	0.484038	4_1:-76795349	Msa0573580:three_prime_UTR
AAGAATTGGAACCAGTGACA+TGG	0.617295	4_1:-76795548	Msa0573580:three_prime_UTR
AAGATAAAAGCGACTGTGAG+AGG	0.541206	4_1:+76795516	None:intergenic
AATAAGAGAAAGCTTCTCTC+GGG	0.539929	4_1:-76794518	Msa0573580:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATAAGCAACGTTATTG+TGG	-	chr4_1:76794954-76794973	Msa0573580:intron	30.0%
CTATAGGCTTAATTGAGATA+TGG	+	chr4_1:76795003-76795022	None:intergenic	30.0%
TTAAAGAATATAAGTGGGAC+GGG	-	chr4_1:76795279-76795298	Msa0573580:intron	30.0%
ACTTATTTGAGTCTATCTAC+TGG	+	chr4_1:76795433-76795452	None:intergenic	30.0%
CTAGATTACTAGAATGAAAG+TGG	-	chr4_1:76795743-76795762	Msa0573580:intron	30.0%
TGAATTTCTATCTATTGCAG+CGG	-	chr4_1:76795966-76795985	Msa0573580:CDS	30.0%
TACAATGTTTGAAAAGGAAG+AGG	-	chr4_1:76795992-76796011	Msa0573580:CDS	30.0%
TCGCTAAAAAGATTCAAAAC+TGG	-	chr4_1:76796158-76796177	Msa0573580:intron	30.0%
TAACGCTCTTTCTTATCTTT+AGG	-	chr4_1:76797594-76797613	Msa0573580:intron	30.0%
TAACAAGAACTGCTTAAAAC+AGG	+	chr4_1:76798308-76798327	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	76794407	76799567	76794407	ID=Msa0573580;Name=Msa0573580
chr4_1	mRNA	76794407	76799567	76794407	ID=Msa0573580-mRNA-1;Parent=Msa0573580;Name=Msa0573580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=246\|1\|1\|1\|0.62\|0.44\|9\|632\|222
chr4_1	exon	76794407	76794742	76794407	ID=Msa0573580-mRNA-1:exon:26998;Parent=Msa0573580-mRNA-1
chr4_1	exon	76795322	76795613	76795322	ID=Msa0573580-mRNA-1:exon:26997;Parent=Msa0573580-mRNA-1
chr4_1	exon	76795874	76796063	76795874	ID=Msa0573580-mRNA-1:exon:26996;Parent=Msa0573580-mRNA-1
chr4_1	exon	76796197	76796311	76796197	ID=Msa0573580-mRNA-1:exon:26995;Parent=Msa0573580-mRNA-1
chr4_1	exon	76796621	76796712	76796621	ID=Msa0573580-mRNA-1:exon:26994;Parent=Msa0573580-mRNA-1
chr4_1	exon	76797903	76797988	76797903	ID=Msa0573580-mRNA-1:exon:26993;Parent=Msa0573580-mRNA-1
chr4_1	exon	76798729	76798828	76798729	ID=Msa0573580-mRNA-1:exon:26992;Parent=Msa0573580-mRNA-1
chr4_1	exon	76799160	76799281	76799160	ID=Msa0573580-mRNA-1:exon:26991;Parent=Msa0573580-mRNA-1
chr4_1	exon	76799354	76799567	76799354	ID=Msa0573580-mRNA-1:exon:26990;Parent=Msa0573580-mRNA-1
chr4_1	five_prime_UTR	76799354	76799567	76799354	ID=Msa0573580-mRNA-1:five_prime_utr;Parent=Msa0573580-mRNA-1
chr4_1	five_prime_UTR	76799250	76799281	76799250	ID=Msa0573580-mRNA-1:five_prime_utr;Parent=Msa0573580-mRNA-1
chr4_1	CDS	76799160	76799249	76799160	ID=Msa0573580-mRNA-1:cds;Parent=Msa0573580-mRNA-1
chr4_1	CDS	76798729	76798828	76798729	ID=Msa0573580-mRNA-1:cds;Parent=Msa0573580-mRNA-1
chr4_1	CDS	76797903	76797988	76797903	ID=Msa0573580-mRNA-1:cds;Parent=Msa0573580-mRNA-1
chr4_1	CDS	76796621	76796712	76796621	ID=Msa0573580-mRNA-1:cds;Parent=Msa0573580-mRNA-1
chr4_1	CDS	76796197	76796311	76796197	ID=Msa0573580-mRNA-1:cds;Parent=Msa0573580-mRNA-1
chr4_1	CDS	76795878	76796063	76795878	ID=Msa0573580-mRNA-1:cds;Parent=Msa0573580-mRNA-1
chr4_1	three_prime_UTR	76795874	76795877	76795874	ID=Msa0573580-mRNA-1:three_prime_utr;Parent=Msa0573580-mRNA-1
chr4_1	three_prime_UTR	76795322	76795613	76795322	ID=Msa0573580-mRNA-1:three_prime_utr;Parent=Msa0573580-mRNA-1
chr4_1	three_prime_UTR	76794407	76794742	76794407	ID=Msa0573580-mRNA-1:three_prime_utr;Parent=Msa0573580-mRNA-1

Gene Sequence

>Msa0573580

ATGAAATCATCCATGTTTTCAAAGCTTTTTGGTAAAACTAAACAGGATCAACAAGCCAATACTCTATCAACTTTAGAAAAATTAAGTGAGACACTTGGAATGCTAGAGAAAAAGGAGAGCGTGCTTCTTAAAAAGGCTGCAGCTGAAGTTGAAAGGGCTAAAGAATTCACAAGAGCCAAGAATAAAAGGGCGGCGATACAATGTTTGAAAAGGAAGAGGCTATATGAACAGCAAGTAGAGCAGCTTGGAAACTTCCAGTTGCGTATTCATGATCAGATGATAATGCTGGAAGGTGCCAAGGCAACCACAGAAACAGTAGCCGCATTGAGAACTGGAGCGGCTGCTATGAAGACTATGCAACAAGAAACGAATATTAATGATGTTGATGCGACCATGGATGAGATTAACGAACAGACTGAGAACATGAAACAGATTCAGGAATTATTGTCCGCTCCAATTGGTGCAGCTGCTGATTTTGACGAGGATGAACTTGAAGCAGAACTTGAAGAGCTAGAGGGTGCTGAGTTGGAAGAACAGCTTCTTCAGCCTGCAATTACAACTCCAGAAGCCTCTGTGCATGTCCCAGCTAGGCGGCCTACTCGTCCGGTGCATACAAAGCCCACTCCTGAGGAAGAATTGGCAGCTTTGCAAGCTGAGATGGCGCTTTGA

Protein sequence

>Msa0573580

MKSSMFSKLFGKTKQDQQANTLSTLEKLSETLGMLEKKESVLLKKAAAEVERAKEFTRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVAALRTGAAAMKTMQQETNINDVDATMDEINEQTENMKQIQELLSAPIGAAADFDEDELEAELEELEGAELEEQLLQPAITTPEASVHVPARRPTRPVHTKPTPEEELAALQAEMAL*