AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0633760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633760 MtrunA17_Chr4g0011961 90.672 268 25 0 75 342 27 294 3.61e-173 490
Msa0633760 MtrunA17_Chr4g0011931 84.815 270 40 1 75 343 27 296 1.16e-158 446
Msa0633760 MtrunA17_Chr4g0011981 82.528 269 46 1 75 342 27 295 1.39e-149 430
Msa0633760 MtrunA17_Chr4g0011921 76.190 273 64 1 70 341 22 294 9.13e-147 423
Msa0633760 MtrunA17_Chr4g0011861 72.426 272 73 2 74 343 26 297 1.02e-143 408
Msa0633760 MtrunA17_Chr4g0011901 78.571 266 56 1 78 342 30 295 1.40e-142 412
Msa0633760 MtrunA17_Chr4g0011881 72.491 269 74 0 74 342 27 295 3.50e-142 411
Msa0633760 MtrunA17_Chr4g0011871 72.694 271 72 2 74 342 26 296 2.43e-141 409
Msa0633760 MtrunA17_Chr5g0419691 71.111 270 77 1 74 342 26 295 1.38e-139 405
Msa0633760 MtrunA17_Chr5g0406651 74.060 266 68 1 78 342 31 296 3.25e-135 394
Msa0633760 MtrunA17_Chr7g0218601 54.307 267 120 1 78 342 35 301 2.99e-102 310
Msa0633760 MtrunA17_Chr7g0218611 55.805 267 116 1 78 342 34 300 1.42e-99 303
Msa0633760 MtrunA17_Chr1g0156101 44.964 278 140 3 78 342 33 310 1.15e-80 254
Msa0633760 MtrunA17_Chr5g0431501 47.015 268 139 2 78 342 34 301 3.76e-78 248
Msa0633760 MtrunA17_Chr5g0431461 47.015 268 139 2 78 342 34 301 3.76e-78 248
Msa0633760 MtrunA17_Chr1g0156081 43.403 288 150 3 68 342 47 334 2.16e-77 246
Msa0633760 MtrunA17_Chr5g0431511 45.522 268 143 2 78 342 34 301 3.66e-76 243
Msa0633760 MtrunA17_Chr3g0116681 35.424 271 168 5 74 342 37 302 8.86e-52 179
Msa0633760 MtrunA17_Chr4g0058191 33.700 273 171 6 73 342 24 289 6.13e-49 171
Msa0633760 MtrunA17_Chr4g0058231 32.740 281 174 4 73 342 24 300 2.69e-48 169
Msa0633760 MtrunA17_Chr4g0058201 32.847 274 174 5 73 342 24 291 9.87e-47 165
Msa0633760 MtrunA17_Chr4g0047641 33.216 283 178 7 66 342 38 315 4.82e-46 164
Msa0633760 MtrunA17_Chr1g0156061 32.384 281 128 4 66 342 44 266 4.67e-45 160
Msa0633760 MtrunA17_Chr2g0310391 32.000 275 184 3 69 342 20 292 1.75e-43 156
Msa0633760 MtrunA17_Chr3g0101711 33.571 280 173 4 69 341 29 302 5.63e-43 155
Msa0633760 MtrunA17_Chr3g0116741 33.333 273 164 6 78 342 52 314 5.72e-43 155
Msa0633760 MtrunA17_Chr6g0472311 31.690 284 171 6 75 342 39 315 6.00e-43 155
Msa0633760 MtrunA17_Chr4g0058281 33.214 280 178 5 67 341 36 311 7.61e-43 155
Msa0633760 MtrunA17_Chr6g0484811 31.655 278 173 7 74 342 34 303 3.78e-42 153
Msa0633760 MtrunA17_Chr1g0162801 32.971 276 171 5 74 342 34 302 7.46e-42 152
Msa0633760 MtrunA17_Chr4g0047661 32.075 265 167 6 86 342 57 316 8.14e-42 152
Msa0633760 MtrunA17_Chr4g0047691 33.455 275 166 6 75 342 50 314 1.37e-41 152
Msa0633760 MtrunA17_Chr4g0047631 32.463 268 156 8 86 342 58 311 2.02e-41 151
Msa0633760 MtrunA17_Chr3g0101691 32.500 280 176 4 70 342 31 304 4.98e-41 150
Msa0633760 MtrunA17_Chr3g0101651 34.601 263 159 4 86 341 47 303 9.67e-41 149
Msa0633760 MtrunA17_Chr3g0101721 32.979 282 173 4 69 342 29 302 1.78e-40 148
Msa0633760 MtrunA17_Chr2g0310381 31.970 269 180 3 75 342 26 292 4.09e-40 147
Msa0633760 MtrunA17_Chr8g0361471 32.740 281 176 5 69 342 26 300 1.22e-39 146
Msa0633760 MtrunA17_Chr6g0484841 32.540 252 162 4 75 325 35 279 1.91e-39 145
Msa0633760 MtrunA17_Chr5g0445461 33.333 273 172 5 72 341 33 298 2.63e-39 145
Msa0633760 MtrunA17_Chr5g0403331 34.296 277 163 5 76 341 34 302 6.65e-39 144
Msa0633760 MtrunA17_Chr4g0076161 34.420 276 165 5 72 341 32 297 7.52e-39 144
Msa0633760 MtrunA17_Chr5g0445451 31.250 272 179 4 72 341 33 298 1.28e-38 143
Msa0633760 MtrunA17_Chr4g0058261 31.559 263 169 5 86 341 71 329 2.69e-38 143
Msa0633760 MtrunA17_Chr3g0101671 31.010 287 185 4 63 342 24 304 4.43e-38 142
Msa0633760 MtrunA17_Chr6g0466331 31.673 281 179 5 69 342 26 300 5.54e-38 142
Msa0633760 MtrunA17_Chr6g0465511 31.673 281 179 5 69 342 26 300 5.71e-38 141
Msa0633760 MtrunA17_Chr5g0445531 32.959 267 168 4 78 341 39 297 6.10e-38 141
Msa0633760 MtrunA17_Chr5g0445381 34.363 259 158 5 87 341 79 329 7.71e-38 141
Msa0633760 MtrunA17_Chr5g0403351 33.955 268 156 6 86 341 43 301 8.35e-38 141
Msa0633760 MtrunA17_Chr3g0101751 31.698 265 165 4 86 342 51 307 1.29e-37 140
Msa0633760 MtrunA17_Chr3g0101801 31.502 273 171 5 78 342 43 307 2.19e-37 140
Msa0633760 MtrunA17_Chr1g0167321 33.808 281 172 5 69 342 26 299 3.87e-37 139
Msa0633760 MtrunA17_Chr5g0430031 34.483 261 159 7 66 323 27 278 1.44e-36 138
Msa0633760 MtrunA17_Chr5g0431641 32.841 271 166 7 78 342 39 299 1.57e-36 137
Msa0633760 MtrunA17_Chr6g0463611 34.307 274 167 6 74 343 46 310 2.25e-36 134
Msa0633760 MtrunA17_Chr8g0382901 29.630 270 186 3 73 342 488 753 2.31e-36 139
Msa0633760 MtrunA17_Chr8g0382901 28.014 282 182 4 61 342 14 274 2.82e-32 127
Msa0633760 MtrunA17_Chr5g0403321 31.786 280 169 6 76 341 33 304 2.32e-36 137
Msa0633760 MtrunA17_Chr3g0101601 35.458 251 149 5 78 321 37 281 4.18e-36 136
Msa0633760 MtrunA17_Chr5g0431671 30.403 273 171 7 78 342 39 300 1.15e-35 135
Msa0633760 MtrunA17_Chr3g0101761 30.201 298 184 6 54 342 18 300 1.50e-35 135
Msa0633760 MtrunA17_Chr5g0445441 31.250 272 179 4 72 341 74 339 1.94e-35 135
Msa0633760 MtrunA17_Chr3g0101831 29.286 280 185 4 69 342 29 301 2.08e-35 134
Msa0633760 MtrunA17_Chr3g0086691 31.179 263 173 4 86 342 41 301 2.11e-35 134
Msa0633760 MtrunA17_Chr4g0046691 30.859 256 167 6 68 320 31 279 2.17e-35 130
Msa0633760 MtrunA17_Chr5g0405001 31.343 268 165 7 86 342 53 312 2.27e-35 134
Msa0633760 MtrunA17_Chr3g0101621 35.983 239 143 4 87 321 43 275 3.10e-35 134
Msa0633760 MtrunA17_Chr3g0101661 29.496 278 184 4 70 341 31 302 3.90e-35 134
Msa0633760 MtrunA17_Chr5g0446161 32.967 273 171 5 72 341 36 299 4.29e-35 134
Msa0633760 MtrunA17_Chr3g0101701 30.882 272 175 4 78 342 39 304 4.73e-35 134
Msa0633760 MtrunA17_Chr5g0445421 32.721 272 154 5 72 341 107 351 6.26e-35 134
Msa0633760 MtrunA17_Chr3g0101731 30.370 270 177 3 78 342 37 300 6.64e-35 133
Msa0633760 MtrunA17_Chr3g0101821 30.325 277 169 6 78 342 36 300 1.12e-34 132
Msa0633760 MtrunA17_Chr8g0357431 30.108 279 184 3 69 342 29 301 1.57e-34 132
Msa0633760 MtrunA17_Chr3g0101811 30.714 280 183 3 69 343 29 302 1.83e-34 132
Msa0633760 MtrunA17_Chr3g0101631 33.333 267 159 4 68 321 21 281 4.07e-34 131
Msa0633760 MtrunA17_Chr8g0357421 31.295 278 181 4 69 342 29 300 5.42e-34 130
Msa0633760 MtrunA17_Chr8g0372251 29.433 282 177 9 75 342 31 304 5.53e-34 130
Msa0633760 MtrunA17_Chr5g0445751 29.740 269 177 6 78 342 45 305 9.99e-34 126
Msa0633760 MtrunA17_Chr4g0024771 29.699 266 179 4 78 341 39 298 2.10e-33 129
Msa0633760 MtrunA17_Chr6g0463791 33.577 274 165 7 74 341 32 294 7.67e-33 127
Msa0633760 MtrunA17_Chr3g0101611 32.982 285 171 8 68 342 28 302 1.05e-32 127
Msa0633760 MtrunA17_Chr5g0446151 32.061 262 165 5 84 341 48 300 1.12e-32 127
Msa0633760 MtrunA17_Chr1g0162811 29.032 279 186 4 69 342 29 300 2.76e-32 126
Msa0633760 MtrunA17_Chr3g0086661 30.531 226 150 3 86 306 41 264 4.92e-32 125
Msa0633760 MtrunA17_Chr3g0086651 30.531 226 150 3 86 306 41 264 6.05e-32 125
Msa0633760 MtrunA17_Chr3g0101571 29.044 272 180 5 76 342 35 298 6.69e-32 125
Msa0633760 MtrunA17_Chr4g0046671 29.249 253 167 4 78 320 45 295 9.61e-32 121
Msa0633760 MtrunA17_Chr4g0061381 30.451 266 169 7 86 342 40 298 9.98e-32 124
Msa0633760 MtrunA17_Chr3g0101741 30.736 231 151 3 115 342 3 227 1.05e-31 123
Msa0633760 MtrunA17_Chr3g0101581 31.183 279 181 5 68 341 28 300 1.07e-31 124
Msa0633760 MtrunA17_Chr5g0430111 31.660 259 167 6 66 322 27 277 1.21e-31 123
Msa0633760 MtrunA17_Chr3g0094231 26.740 273 193 6 72 342 31 298 2.02e-31 123
Msa0633760 MtrunA17_Chr2g0280261 33.333 234 148 3 68 301 27 252 2.13e-31 123
Msa0633760 MtrunA17_Chr5g0430091 32.819 259 164 6 66 322 27 277 3.10e-31 123
Msa0633760 MtrunA17_Chr4g0035921 32.468 231 146 7 75 303 33 255 3.50e-31 123
Msa0633760 MtrunA17_Chr5g0430101 31.048 248 162 5 76 322 35 274 3.87e-31 122
Msa0633760 MtrunA17_Chr6g0463801 34.884 215 134 2 86 300 46 254 3.97e-31 122
Msa0633760 MtrunA17_Chr7g0254641 28.464 267 177 7 68 323 28 291 2.10e-30 120
Msa0633760 MtrunA17_Chr4g0046631 29.845 258 166 6 74 320 43 296 2.58e-30 120
Msa0633760 MtrunA17_Chr5g0401681 31.522 276 175 7 75 343 30 298 5.18e-30 119
Msa0633760 MtrunA17_Chr8g0339311 30.175 285 179 7 49 322 24 299 1.48e-29 118
Msa0633760 MtrunA17_Chr4g0057001 28.782 271 181 6 78 342 51 315 2.42e-29 117
Msa0633760 MtrunA17_Chr1g0174481 26.644 289 197 6 62 342 19 300 2.56e-29 117
Msa0633760 MtrunA17_Chr5g0430131 31.452 248 162 4 76 322 36 276 3.31e-29 117
Msa0633760 MtrunA17_Chr8g0390881 30.263 228 151 4 75 301 34 254 4.61e-29 117
Msa0633760 MtrunA17_Chr5g0430081 31.076 251 160 6 76 322 34 275 6.00e-29 116
Msa0633760 MtrunA17_Chr8g0344181 31.873 251 157 7 86 328 47 291 9.22e-29 116
Msa0633760 MtrunA17_Chr8g0344151 30.159 252 164 6 78 322 37 283 1.65e-28 115
Msa0633760 MtrunA17_Chr4g0020041 28.517 263 175 5 86 342 46 301 1.99e-28 115
Msa0633760 MtrunA17_Chr5g0402971 27.586 261 173 6 75 322 38 295 2.14e-28 112
Msa0633760 MtrunA17_Chr5g0401691 31.618 272 174 8 75 342 49 312 2.71e-28 115
Msa0633760 MtrunA17_Chr4g0056951 28.736 261 173 6 89 342 56 310 4.59e-27 111
Msa0633760 MtrunA17_Chr2g0304871 29.502 261 172 7 73 322 34 293 6.18e-27 111
Msa0633760 MtrunA17_Chr1g0174421 28.148 270 188 4 78 343 48 315 8.70e-27 108
Msa0633760 MtrunA17_Chr4g0039391 28.421 285 186 9 69 343 27 303 1.25e-26 110
Msa0633760 MtrunA17_Chr4g0030701 27.798 277 184 6 78 342 36 308 8.54e-26 107
Msa0633760 MtrunA17_Chr1g0174461 24.739 287 207 3 62 341 20 304 2.09e-25 106
Msa0633760 MtrunA17_Chr5g0430171 32.524 206 131 4 66 270 27 225 9.92e-25 100
Msa0633760 MtrunA17_Chr3g0094171 26.937 271 192 5 75 342 38 305 1.05e-24 104
Msa0633760 MtrunA17_Chr2g0296661 28.788 264 171 8 89 341 44 301 1.08e-24 104
Msa0633760 MtrunA17_Chr5g0445411 41.463 123 67 2 87 206 55 175 1.96e-24 98.2
Msa0633760 MtrunA17_Chr6g0484771 34.507 142 88 1 113 254 1 137 2.65e-24 96.7
Msa0633760 MtrunA17_Chr6g0451781 29.555 247 160 4 68 301 65 310 1.29e-23 101
Msa0633760 MtrunA17_Chr6g0451751 29.046 241 151 6 109 331 74 312 2.21e-23 100
Msa0633760 MtrunA17_Chr4g0030711 26.493 268 180 6 88 342 48 311 2.89e-23 100
Msa0633760 MtrunA17_Chr6g0466941 28.926 242 159 4 73 302 30 270 3.25e-23 100
Msa0633760 MtrunA17_Chr4g0053621 28.929 280 182 6 75 343 29 302 3.83e-23 100
Msa0633760 MtrunA17_Chr7g0235551 27.805 205 147 1 98 302 54 257 3.83e-23 100
Msa0633760 MtrunA17_Chr6g0451741 27.037 270 176 5 73 322 56 324 5.08e-23 99.8
Msa0633760 MtrunA17_Chr3g0084921 26.449 276 188 5 78 342 36 307 1.02e-22 99.0
Msa0633760 MtrunA17_Chr6g0466901 28.016 257 155 6 66 302 24 270 1.10e-22 99.0
Msa0633760 MtrunA17_Chr1g0160851 24.219 256 188 4 76 328 33 285 1.88e-22 98.2
Msa0633760 MtrunA17_Chr7g0224561 27.037 270 170 7 86 342 41 296 2.65e-22 97.8
Msa0633760 MtrunA17_Chr1g0174441 24.569 232 166 3 62 285 39 269 2.99e-22 97.4
Msa0633760 MtrunA17_Chr4g0008101 29.187 209 129 4 109 301 72 277 3.90e-22 97.4
Msa0633760 MtrunA17_Chr7g0224551 27.037 270 170 7 86 342 41 296 4.58e-22 97.1
Msa0633760 MtrunA17_Chr8g0351801 26.103 272 178 6 87 342 44 308 5.49e-22 96.7
Msa0633760 MtrunA17_Chr1g0174471 25.564 266 186 5 86 342 59 321 8.12e-22 96.3
Msa0633760 MtrunA17_Chr7g0246221 28.016 257 173 7 69 319 26 276 2.72e-21 94.7
Msa0633760 MtrunA17_Chr4g0052851 28.571 217 147 4 86 301 43 252 3.71e-21 94.4
Msa0633760 MtrunA17_Chr6g0451801 27.309 249 166 4 68 302 30 277 5.11e-21 92.0
Msa0633760 MtrunA17_Chr1g0207841 24.719 267 187 4 88 342 49 313 5.34e-21 94.0
Msa0633760 MtrunA17_Chr1g0174451 22.420 281 209 3 69 342 28 306 6.22e-21 93.6
Msa0633760 MtrunA17_Chr4g0030741 26.236 263 177 6 86 342 73 324 6.49e-21 92.4
Msa0633760 MtrunA17_Chr1g0207851 25.000 268 186 5 88 343 49 313 7.32e-21 92.0
Msa0633760 MtrunA17_Chr7g0255531 25.704 284 177 10 76 341 27 294 1.01e-20 92.8
Msa0633760 MtrunA17_Chr6g0451691 25.461 271 180 5 73 322 37 306 1.16e-20 92.8
Msa0633760 MtrunA17_Chr1g0200961 26.255 259 177 6 71 320 22 275 1.52e-20 92.4
Msa0633760 MtrunA17_Chr1g0205361 24.219 256 188 4 76 328 33 285 3.28e-20 91.3
Msa0633760 MtrunA17_Chr8g0339331 26.908 249 164 7 67 302 29 272 4.85e-20 90.9
Msa0633760 MtrunA17_Chr7g0246151 26.778 239 161 6 88 319 45 276 5.66e-20 90.9
Msa0633760 MtrunA17_Chr7g0258211 26.923 260 183 4 86 342 48 303 6.22e-20 90.5
Msa0633760 MtrunA17_Chr8g0344191 27.586 261 177 6 86 339 78 333 9.05e-20 90.1
Msa0633760 MtrunA17_Chr7g0258221 27.160 243 170 5 68 308 26 263 1.01e-19 90.1
Msa0633760 MtrunA17_Chr4g0052861 27.234 235 162 4 75 302 30 262 1.17e-19 89.7
Msa0633760 MtrunA17_Chr1g0205371 23.438 256 190 4 76 328 34 286 1.24e-19 89.7
Msa0633760 MtrunA17_Chr2g0310371 33.333 126 83 1 69 194 20 144 2.40e-19 83.6
Msa0633760 MtrunA17_Chr7g0246131 23.387 248 186 3 74 319 31 276 6.81e-19 87.4
Msa0633760 MtrunA17_Chr7g0246181 24.686 239 166 6 88 319 45 276 7.09e-19 87.4
Msa0633760 MtrunA17_Chr4g0052881 27.925 265 175 7 68 324 26 282 9.54e-19 87.0
Msa0633760 MtrunA17_Chr8g0362701 23.887 247 181 3 102 342 59 304 1.20e-18 86.7
Msa0633760 MtrunA17_Chr5g0431631 38.739 111 67 1 78 187 51 161 1.56e-18 81.6
Msa0633760 MtrunA17_Chr3g0082701 26.506 249 168 4 68 302 30 277 1.70e-18 86.3
Msa0633760 MtrunA17_Chr8g0362481 24.138 232 169 3 117 342 5 235 2.04e-18 85.9
Msa0633760 MtrunA17_Chr1g0200951 28.972 214 147 4 112 323 99 309 3.23e-18 85.5
Msa0633760 MtrunA17_Chr2g0314731 25.967 181 133 1 102 282 57 236 4.27e-18 85.1
Msa0633760 MtrunA17_Chr3g0117321 41.284 109 63 1 86 194 16 123 4.62e-18 79.3
Msa0633760 MtrunA17_Chr2g0314721 27.624 181 130 1 102 282 68 247 8.16e-18 84.3
Msa0633760 MtrunA17_Chr5g0395331 25.616 203 147 3 76 275 36 237 8.69e-18 84.3
Msa0633760 MtrunA17_Chr1g0164211 24.464 233 174 2 71 303 25 255 1.00e-17 84.0
Msa0633760 MtrunA17_Chr6g0458561 27.692 260 168 8 76 322 54 306 1.21e-17 84.0
Msa0633760 MtrunA17_Chr2g0296651 27.200 250 168 5 102 343 55 298 1.74e-17 83.2
Msa0633760 MtrunA17_Chr2g0310361 32.353 136 90 2 209 343 5 139 3.66e-17 77.4
Msa0633760 MtrunA17_Chr1g0213671 23.828 256 180 7 78 323 35 285 4.55e-17 82.0
Msa0633760 MtrunA17_Chr6g0451641 28.685 251 157 10 67 302 29 272 1.03e-16 80.9
Msa0633760 MtrunA17_Chr6g0451681 32.432 148 96 2 70 213 54 201 1.14e-16 80.9
Msa0633760 MtrunA17_Chr4g0017411 25.778 225 159 4 78 301 32 249 1.40e-16 80.5
Msa0633760 MtrunA17_Chr8g0356001 23.967 242 179 4 63 303 28 265 2.48e-16 79.7
Msa0633760 MtrunA17_Chr4g0046321 22.105 285 201 6 68 342 26 299 3.44e-16 79.3
Msa0633760 MtrunA17_Chr5g0445341 43.902 82 45 1 115 195 3 84 1.24e-15 71.2
Msa0633760 MtrunA17_Chr7g0246121 25.114 219 154 5 88 301 45 258 1.61e-15 77.4
Msa0633760 MtrunA17_Chr3g0116721 29.012 162 108 4 186 342 3 162 1.61e-15 74.3
Msa0633760 MtrunA17_Chr8g0355961 24.017 229 170 3 76 303 40 265 2.22e-15 77.0
Msa0633760 MtrunA17_Chr5g0419451 26.126 222 154 5 112 329 94 309 3.74e-15 76.3
Msa0633760 MtrunA17_Chr5g0395381 26.797 153 110 2 76 228 41 191 4.70e-15 75.9
Msa0633760 MtrunA17_Chr5g0395321 24.848 165 123 1 76 240 41 204 5.45e-15 75.9
Msa0633760 MtrunA17_Chr4g0039901 25.862 232 162 5 76 303 34 259 6.63e-15 75.5
Msa0633760 MtrunA17_Chr4g0046351 21.404 285 203 6 68 342 26 299 6.74e-15 75.5
Msa0633760 MtrunA17_Chr4g0046331 21.404 285 203 6 68 342 26 299 8.18e-15 75.5
Msa0633760 MtrunA17_Chr7g0265611 24.046 262 189 7 70 324 38 296 8.28e-15 75.5
Msa0633760 MtrunA17_Chr6g0472181 50.549 91 38 2 4 88 113 202 9.57e-15 73.2
Msa0633760 MtrunA17_Chr1g0197881 30.201 149 97 4 66 213 24 166 2.46e-14 73.9
Msa0633760 MtrunA17_Chr4g0076181 49.206 63 32 0 115 177 3 65 1.15e-13 68.2
Msa0633760 MtrunA17_Chr1g0197851 30.357 112 76 1 102 213 58 167 1.57e-13 71.2
Msa0633760 MtrunA17_Chr1g0176831 23.273 275 191 7 71 333 53 319 1.95e-13 71.2
Msa0633760 MtrunA17_Chr1g0197871 30.357 112 76 1 102 213 58 167 2.22e-13 70.9
Msa0633760 MtrunA17_Chr2g0314771 24.359 156 118 0 115 270 3 158 4.22e-13 66.6
Msa0633760 MtrunA17_Chr1g0197891 30.357 112 76 1 102 213 58 167 4.93e-13 69.7
Msa0633760 MtrunA17_Chr5g0431601 40.000 80 47 1 115 194 3 81 1.79e-12 62.4
Msa0633760 MtrunA17_Chr5g0432751 27.749 191 123 4 59 241 15 198 1.79e-11 65.1
Msa0633760 MtrunA17_Chr5g0430051 41.463 82 45 2 76 156 37 116 6.12e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633760 AT4G31500.1 41.111 270 159 0 73 342 25 294 8.58e-74 236
Msa0633760 AT4G13770.1 34.831 267 174 0 76 342 29 295 3.19e-59 199
Msa0633760 AT5G57260.1 36.531 271 165 5 76 342 29 296 7.17e-55 187
Msa0633760 AT3G48320.1 34.420 276 169 5 69 342 22 287 2.40e-50 175
Msa0633760 AT3G26320.1 35.915 284 174 5 63 342 17 296 4.38e-50 174
Msa0633760 AT3G48280.1 32.959 267 170 4 76 342 29 286 5.03e-50 174
Msa0633760 AT3G48310.1 33.585 265 166 4 78 342 33 287 5.30e-50 174
Msa0633760 AT3G48270.1 35.019 257 157 4 86 342 40 286 5.83e-50 174
Msa0633760 AT3G26310.1 35.632 261 160 5 86 342 39 295 2.42e-48 170
Msa0633760 AT3G26330.1 36.131 274 167 5 73 342 27 296 2.58e-48 170
Msa0633760 AT3G26300.1 36.131 274 163 6 75 342 29 296 5.17e-48 169
Msa0633760 AT3G48290.2 34.657 277 169 5 69 343 23 289 2.03e-47 167
Msa0633760 AT3G48290.1 34.420 276 169 5 69 342 23 288 3.98e-47 166
Msa0633760 AT4G13310.2 32.692 260 165 5 86 341 41 294 1.67e-46 162
Msa0633760 AT3G26290.1 34.866 261 162 5 86 342 40 296 2.11e-45 162
Msa0633760 AT3G26290.2 34.866 261 162 5 86 342 53 309 2.16e-45 162
Msa0633760 AT4G13310.1 32.692 260 165 5 86 341 41 294 3.23e-45 161
Msa0633760 AT5G24950.1 32.432 259 171 3 84 342 39 293 1.13e-44 160
Msa0633760 AT2G30770.1 31.518 257 171 3 86 342 42 293 3.61e-44 159
Msa0633760 AT2G02580.1 35.971 278 170 5 69 342 23 296 5.22e-44 158
Msa0633760 AT3G26200.1 34.409 279 175 7 69 341 19 295 7.87e-44 157
Msa0633760 AT3G26190.1 34.050 279 176 7 69 341 19 295 9.23e-44 157
Msa0633760 AT3G44250.1 35.612 278 172 5 69 341 19 294 1.98e-43 157
Msa0633760 AT4G13290.1 33.071 254 160 5 86 335 42 289 3.83e-43 155
Msa0633760 AT1G13110.1 31.690 284 185 6 65 341 19 300 1.56e-42 154
Msa0633760 AT3G48300.1 33.463 257 161 5 86 342 38 284 4.17e-42 153
Msa0633760 AT3G48300.2 33.463 257 161 5 86 342 40 286 4.30e-42 153
Msa0633760 AT1G13090.1 35.252 278 162 7 76 343 27 296 5.01e-42 148
Msa0633760 AT1G11610.1 30.153 262 172 5 84 342 40 293 6.89e-42 152
Msa0633760 AT1G13080.1 35.897 273 162 7 78 342 32 299 7.98e-42 152
Msa0633760 AT1G11610.2 30.153 262 172 5 84 342 40 293 1.21e-41 152
Msa0633760 AT3G26210.1 33.077 260 168 4 86 341 40 297 2.33e-41 151
Msa0633760 AT1G13090.2 35.211 284 165 8 69 341 19 294 5.96e-40 147
Msa0633760 AT1G13100.1 34.351 262 160 5 87 341 38 294 5.96e-40 147
Msa0633760 AT5G24960.2 33.205 259 169 3 84 342 40 294 4.24e-39 143
Msa0633760 AT2G24180.1 31.868 273 179 5 74 342 33 302 6.25e-39 144
Msa0633760 AT2G30750.1 33.074 257 167 3 86 342 42 293 1.08e-38 144
Msa0633760 AT5G25180.1 32.472 271 175 5 75 342 27 292 1.15e-38 144
Msa0633760 AT5G24960.1 33.205 259 169 3 84 342 40 294 2.96e-38 142
Msa0633760 AT5G25140.1 32.258 279 180 6 68 342 19 292 3.10e-38 142
Msa0633760 AT5G25120.1 32.601 273 170 6 75 341 27 291 1.62e-37 140
Msa0633760 AT3G26280.1 35.587 281 171 8 68 341 22 299 1.74e-37 140
Msa0633760 AT3G26280.2 35.587 281 171 8 68 341 39 316 2.14e-37 140
Msa0633760 AT3G53280.1 31.655 278 182 6 69 341 19 293 1.30e-36 138
Msa0633760 AT3G26830.1 32.967 273 171 6 76 341 27 294 3.56e-36 137
Msa0633760 AT5G04330.1 33.692 279 168 10 75 342 30 302 5.90e-36 136
Msa0633760 AT5G44620.1 31.034 261 174 4 86 342 55 313 1.67e-35 135
Msa0633760 AT3G26170.1 32.270 282 180 8 68 341 20 298 1.87e-35 135
Msa0633760 AT5G25130.1 31.136 273 183 5 71 341 22 291 1.36e-34 132
Msa0633760 AT3G26180.1 31.317 281 184 7 68 341 20 298 1.52e-34 132
Msa0633760 AT3G26150.1 32.384 281 179 8 69 341 21 298 3.16e-34 131
Msa0633760 AT3G26160.1 31.365 271 176 7 78 341 31 298 2.04e-33 129
Msa0633760 AT4G36220.1 33.486 218 137 5 86 303 49 258 4.40e-33 129
Msa0633760 AT4G20240.2 30.566 265 179 4 69 331 24 285 1.87e-32 125
Msa0633760 AT3G26270.1 32.975 279 179 7 68 340 22 298 1.90e-32 127
Msa0633760 AT4G20240.1 30.566 265 179 4 69 331 24 285 4.24e-32 125
Msa0633760 AT5G42590.1 30.894 246 159 6 86 327 41 279 4.61e-32 125
Msa0633760 AT5G06900.1 31.086 267 180 4 78 342 35 299 1.29e-31 124
Msa0633760 AT3G53300.1 29.710 276 187 7 71 341 22 295 3.13e-31 123
Msa0633760 AT4G12300.1 30.483 269 179 6 78 341 43 308 7.01e-30 119
Msa0633760 AT3G25180.2 27.843 255 177 5 73 322 35 287 4.67e-28 113
Msa0633760 AT4G22710.1 29.811 265 171 6 86 342 62 319 7.05e-28 114
Msa0633760 AT3G25180.1 27.843 255 177 5 73 322 35 287 1.10e-27 113
Msa0633760 AT5G67310.1 30.742 283 171 9 73 343 38 307 1.44e-27 113
Msa0633760 AT1G01280.1 27.642 246 168 4 86 323 41 284 1.92e-27 112
Msa0633760 AT3G26220.1 31.915 282 180 10 69 341 20 298 3.68e-27 112
Msa0633760 AT5G07990.1 28.800 250 167 6 78 323 34 276 4.02e-27 112
Msa0633760 AT4G22690.1 29.434 265 172 6 86 342 93 350 5.86e-27 111
Msa0633760 AT4G37320.1 31.321 265 155 8 78 321 33 291 1.79e-26 110
Msa0633760 AT3G26230.1 32.155 283 178 9 69 341 17 295 3.59e-26 109
Msa0633760 AT3G53290.1 30.734 218 145 5 131 343 11 227 4.80e-25 105
Msa0633760 AT4G37400.1 27.444 266 169 8 86 342 40 290 8.38e-25 105
Msa0633760 AT4G12330.1 26.316 266 179 7 86 342 55 312 2.64e-24 103
Msa0633760 AT4G12320.1 27.675 271 188 6 78 342 43 311 3.90e-24 103
Msa0633760 AT4G37410.1 28.044 271 179 6 78 342 32 292 6.57e-24 102
Msa0633760 AT4G37330.1 28.938 273 159 9 86 343 41 293 1.03e-23 102
Msa0633760 AT4G12310.1 28.137 263 181 4 86 342 53 313 1.19e-23 102
Msa0633760 AT2G23220.1 28.736 261 150 10 99 343 71 311 1.46e-23 101
Msa0633760 AT4G37340.1 27.941 272 181 7 78 342 32 295 1.70e-23 101
Msa0633760 AT5G35715.1 25.974 231 167 4 115 341 3 233 2.08e-23 100
Msa0633760 AT2G23190.1 28.723 282 167 11 78 343 77 340 3.52e-23 100
Msa0633760 AT4G31970.1 26.296 270 179 6 78 329 33 300 4.16e-23 100
Msa0633760 AT4G37310.1 30.705 241 150 7 74 302 27 262 4.45e-23 100
Msa0633760 AT1G74550.1 29.961 257 155 9 78 325 28 268 9.94e-23 99.4
Msa0633760 AT4G37360.1 28.936 235 148 6 77 300 31 257 1.72e-22 98.6
Msa0633760 AT4G31940.1 26.354 277 171 8 78 329 33 301 1.91e-22 98.6
Msa0633760 AT5G36220.1 27.817 284 171 10 78 343 35 302 1.52e-21 95.9
Msa0633760 AT4G37430.1 26.119 268 176 8 87 342 38 295 1.81e-21 95.5
Msa0633760 AT4G37370.1 30.396 227 139 6 86 301 40 258 6.88e-21 94.0
Msa0633760 AT3G20090.2 27.237 257 175 3 88 338 54 304 7.71e-21 94.0
Msa0633760 AT5G57220.1 28.511 235 147 8 78 301 31 255 8.51e-21 93.6
Msa0633760 AT3G28740.1 28.163 245 147 8 112 343 76 304 1.17e-20 93.2
Msa0633760 AT4G20235.1 27.586 232 138 7 77 304 31 236 1.80e-20 91.3
Msa0633760 AT2G40890.1 26.148 283 177 9 76 341 26 293 4.88e-20 91.3
Msa0633760 AT2G25160.2 28.750 240 150 7 78 302 35 268 1.22e-19 89.7
Msa0633760 AT2G25160.1 28.750 240 150 7 78 302 35 268 1.34e-19 90.1
Msa0633760 AT3G20950.1 25.098 255 188 2 89 342 58 310 2.11e-19 89.7
Msa0633760 AT3G20940.1 25.000 268 195 3 78 342 43 307 2.85e-19 89.0
Msa0633760 AT2G14100.1 24.514 257 189 3 88 342 54 307 5.11e-19 88.2
Msa0633760 AT1G50520.1 24.453 274 174 7 86 342 52 309 5.53e-19 88.2
Msa0633760 AT1G74540.1 26.020 196 132 4 86 274 36 225 1.37e-18 87.0
Msa0633760 AT4G15360.1 24.528 265 195 3 78 339 41 303 1.86e-18 86.7
Msa0633760 AT2G45550.1 26.316 228 151 5 78 293 39 261 8.05e-18 84.7
Msa0633760 AT5G10600.1 25.424 236 165 4 73 301 42 273 1.16e-17 84.3
Msa0633760 AT5G06905.1 21.970 264 200 4 78 338 32 292 1.67e-17 84.0
Msa0633760 AT2G27000.1 24.904 261 184 6 88 342 50 304 2.82e-17 83.2
Msa0633760 AT2G45570.1 28.000 250 164 7 86 324 47 291 3.35e-17 82.8
Msa0633760 AT1G13080.2 32.353 170 100 6 180 342 20 181 4.04e-17 82.0
Msa0633760 AT3G32047.1 24.016 254 189 2 88 340 53 303 4.13e-17 82.8
Msa0633760 AT5G10610.1 27.074 229 162 3 76 301 31 257 8.29e-17 81.6
Msa0633760 AT4G20235.2 35.922 103 65 1 202 304 1 102 1.05e-16 76.6
Msa0633760 AT3G20110.1 26.054 261 184 5 86 342 48 303 1.27e-16 81.3
Msa0633760 AT2G42250.1 23.333 270 204 3 74 342 38 305 1.83e-16 80.9
Msa0633760 AT3G20130.1 22.868 258 186 4 88 339 53 303 2.44e-16 80.5
Msa0633760 AT1G13710.1 28.889 225 150 7 111 329 84 304 6.79e-16 79.0
Msa0633760 AT3G52970.1 22.388 201 154 2 78 276 37 237 1.03e-15 78.6
Msa0633760 AT3G20960.2 26.250 240 167 4 104 338 68 302 1.57e-15 77.8
Msa0633760 AT2G05180.1 24.514 257 182 3 88 338 52 302 1.68e-15 77.4
Msa0633760 AT4G15350.1 24.904 261 185 3 88 342 45 300 2.67e-15 77.0
Msa0633760 AT5G42580.1 23.651 241 171 3 102 342 64 291 4.11e-15 76.6
Msa0633760 AT3G20100.1 23.970 267 183 5 86 342 50 306 1.18e-14 75.1
Msa0633760 AT1G33720.1 24.549 277 192 7 76 342 37 306 1.22e-14 75.1
Msa0633760 AT2G45560.2 25.475 263 176 8 78 327 39 294 1.48e-14 73.9
Msa0633760 AT2G45580.3 24.345 267 185 6 87 342 48 308 2.13e-14 73.9
Msa0633760 AT3G53305.1 27.976 168 118 3 115 279 3 170 2.20e-14 73.6
Msa0633760 AT3G52970.2 21.395 215 153 2 78 276 37 251 2.50e-14 74.3
Msa0633760 AT2G45560.1 25.475 263 176 8 78 327 39 294 2.89e-14 73.9
Msa0633760 AT2G45580.1 24.345 267 185 6 87 342 48 308 2.99e-14 73.9
Msa0633760 AT2G45560.3 27.215 158 113 2 78 234 39 195 4.88e-14 71.2
Msa0633760 AT5G47990.1 23.735 257 192 3 88 342 53 307 1.49e-13 72.0
Msa0633760 AT5G09970.1 26.872 227 158 6 100 322 94 316 3.31e-13 70.9
Msa0633760 AT4G31950.1 24.638 276 165 9 78 329 33 289 3.77e-13 70.5
Msa0633760 AT3G61040.2 25.847 236 149 5 74 293 31 256 7.40e-13 69.3
Msa0633760 AT3G20140.1 23.571 280 183 6 78 342 43 306 7.91e-13 69.7
Msa0633760 AT1G50560.1 25.379 264 181 7 88 342 54 310 1.44e-12 68.9
Msa0633760 AT3G61040.1 25.806 248 149 8 67 293 23 256 1.48e-12 68.9
Msa0633760 AT3G10560.1 29.586 169 105 5 86 245 55 218 1.50e-12 68.9
Msa0633760 AT1G66540.1 26.064 188 121 7 164 342 4 182 1.60e-12 68.2
Msa0633760 AT1G74110.1 26.201 229 154 6 112 329 101 325 2.31e-12 68.2
Msa0633760 AT3G61880.2 26.636 214 147 7 112 322 103 309 3.29e-12 67.8
Msa0633760 AT2G46660.1 27.830 212 143 8 112 322 107 309 4.19e-12 67.4
Msa0633760 AT4G15380.1 23.293 249 164 6 104 341 69 301 7.28e-12 66.6
Msa0633760 AT3G61880.1 26.636 214 147 7 112 322 103 309 7.93e-12 66.6
Msa0633760 AT5G04630.1 25.301 166 116 4 86 245 47 210 2.23e-11 65.1
Msa0633760 AT3G20080.2 23.308 266 194 4 78 338 43 303 6.63e-11 63.9
Msa0633760 AT3G20080.1 23.308 266 194 4 78 338 43 303 6.63e-11 63.9

Find 35 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTGTGTATTGTCTATT+TGG 0.129527 4_3:-19894688 None:intergenic
CAAAATGTTGTAGTCATAAT+AGG 0.287128 4_3:+19894016 Msa0633760:CDS
ACCATATAATATAGGTCTAT+TGG 0.293226 4_3:-19894203 None:intergenic
TCCAATAGACCTATATTATA+TGG 0.308708 4_3:+19894202 Msa0633760:CDS
TTTCAAGTACTATAATTTGT+AGG 0.316267 4_3:+19894446 Msa0633760:CDS
TTCAAATATGAGTGAGATAT+TGG 0.337148 4_3:+19894417 Msa0633760:CDS
AGAGATTATTGATGAACATT+TGG 0.343337 4_3:+19894663 Msa0633760:CDS
ACAAGCTATTGTTGTTTCTT+CGG 0.370093 4_3:+19894135 Msa0633760:CDS
TCATGAGTGTCAAGCTTTGC+TGG 0.371257 4_3:+19894531 Msa0633760:CDS
GAAAATTGAAGATAAAGATT+AGG 0.377519 4_3:-19894061 None:intergenic
ATTGTTCTCACAAAATCCTT+TGG 0.378918 4_3:-19893113 None:intergenic
ATTGGAAAACAAATGGTCAT+TGG 0.385770 4_3:-19894185 None:intergenic
ATTATATTCCATTCACAAGT+TGG 0.389587 4_3:+19894572 Msa0633760:CDS
ACTGAGAGAAGTAGATTTCA+TGG 0.394743 4_3:+19894502 Msa0633760:CDS
CAAGTTGGATTGATAAACTT+AGG 0.397155 4_3:+19894587 Msa0633760:CDS
TTATCAATCCAACTTGTGAA+TGG 0.426340 4_3:-19894580 None:intergenic
AAGTTGGATTGATAAACTTA+GGG 0.431962 4_3:+19894588 Msa0633760:CDS
GGGAGAAGCTATGAGGATGA+AGG 0.471946 4_3:+19894478 Msa0633760:CDS
TAGGTCTATTGGAAAACAAA+TGG 0.480464 4_3:-19894192 None:intergenic
CCAAGTTGAATTGAAAATAG+AGG 0.490823 4_3:-19894106 None:intergenic
TCGTCTTGATAGAAATTTCA+AGG 0.500467 4_3:+19894621 Msa0633760:CDS
GGCAGGAAAATAATCTTAAG+AGG 0.517459 4_3:+19893223 Msa0633760:intron
ACCATGGTAAATCAAGTTCA+AGG 0.526805 4_3:+19893258 Msa0633760:CDS
ACAGTGGATCATCAAGTTGA+AGG 0.538915 4_3:+19893160 Msa0633760:CDS
TAGACAATACACAGATGAAG+AGG 0.583528 4_3:+19894693 Msa0633760:CDS
AAGTCTGTTGAACGGGCCAA+AGG 0.586198 4_3:+19893097 Msa0633760:CDS
CCACATCAAAGGAGTCCTCA+TGG 0.595262 4_3:+19894780 Msa0633760:CDS
ACCTTGAACTTGATTTACCA+TGG 0.632015 4_3:-19893259 None:intergenic
GAAGAAATTGAAGTCTACAG+TGG 0.651499 4_3:+19893144 Msa0633760:CDS
CCATGAGGACTCCTTTGATG+TGG 0.652938 4_3:-19894780 None:intergenic
GTTGGATTGATAAACTTAGG+GGG 0.653744 4_3:+19894590 Msa0633760:CDS
AGGAAAATAATCTTAAGAGG+CGG 0.665109 4_3:+19893226 Msa0633760:CDS
GAGGCGGATAAGATCTACCA+TGG 0.675227 4_3:+19893242 Msa0633760:CDS
AATTAAAATATCATACCATG+AGG 0.683726 4_3:-19894795 None:intergenic
AGTTGGATTGATAAACTTAG+GGG 0.686441 4_3:+19894589 Msa0633760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTAGAACTTTAATTTAT+AGG - chr4_3:19893418-19893437 None:intergenic 15.0%
!!! TAAATACCTTTTTTTTACAA+CGG + chr4_3:19893643-19893662 Msa0633760:intron 15.0%
!! TTTAAATTTATACAAAGCTA+CGG - chr4_3:19893816-19893835 None:intergenic 15.0%
!!! AGCAAAAATTGTTTTATAAT+GGG + chr4_3:19894227-19894246 Msa0633760:CDS 15.0%
!! AAAATGATCAAAAAAATTTC+AGG + chr4_3:19894373-19894392 Msa0633760:CDS 15.0%
!! AAATGATCAAAAAAATTTCA+GGG + chr4_3:19894374-19894393 Msa0633760:CDS 15.0%
!!! TGTTTAGAACTTTAATTTAT+AGG - chr4_3:19893418-19893437 None:intergenic 15.0%
!!! TAAATACCTTTTTTTTACAA+CGG + chr4_3:19893643-19893662 Msa0633760:intron 15.0%
!! TTTAAATTTATACAAAGCTA+CGG - chr4_3:19893816-19893835 None:intergenic 15.0%
!!! AGCAAAAATTGTTTTATAAT+GGG + chr4_3:19894227-19894246 Msa0633760:CDS 15.0%
!! AAAATGATCAAAAAAATTTC+AGG + chr4_3:19894373-19894392 Msa0633760:CDS 15.0%
!! AAATGATCAAAAAAATTTCA+GGG + chr4_3:19894374-19894393 Msa0633760:CDS 15.0%
!! ACTTAATATTGCAATAATCT+TGG - chr4_3:19893539-19893558 None:intergenic 20.0%
!! AGTCAAATTAAAATGATACA+AGG + chr4_3:19893556-19893575 Msa0633760:intron 20.0%
!! GAAAATTGAAGATAAAGATT+AGG - chr4_3:19894064-19894083 None:intergenic 20.0%
!! TCTCAATTCTCAAAAATATA+TGG + chr4_3:19894082-19894101 Msa0633760:CDS 20.0%
!!! CAGCAAAAATTGTTTTATAA+TGG + chr4_3:19894226-19894245 Msa0633760:CDS 20.0%
!!! TTCTTCTATAAGAAATTTTG+AGG + chr4_3:19894345-19894364 Msa0633760:CDS 20.0%
!!! TTTCAAGTACTATAATTTGT+AGG + chr4_3:19894446-19894465 Msa0633760:CDS 20.0%
!!! ATAATTTGTAGGATTGTTTT+TGG + chr4_3:19894457-19894476 Msa0633760:CDS 20.0%
!!! TAATTTGTAGGATTGTTTTT+GGG + chr4_3:19894458-19894477 Msa0633760:CDS 20.0%
!! ACTTAATATTGCAATAATCT+TGG - chr4_3:19893539-19893558 None:intergenic 20.0%
!! AGTCAAATTAAAATGATACA+AGG + chr4_3:19893556-19893575 Msa0633760:intron 20.0%
!! GAAAATTGAAGATAAAGATT+AGG - chr4_3:19894064-19894083 None:intergenic 20.0%
!! TCTCAATTCTCAAAAATATA+TGG + chr4_3:19894082-19894101 Msa0633760:CDS 20.0%
!!! CAGCAAAAATTGTTTTATAA+TGG + chr4_3:19894226-19894245 Msa0633760:CDS 20.0%
!!! TTCTTCTATAAGAAATTTTG+AGG + chr4_3:19894345-19894364 Msa0633760:CDS 20.0%
!!! TTTCAAGTACTATAATTTGT+AGG + chr4_3:19894446-19894465 Msa0633760:CDS 20.0%
!!! ATAATTTGTAGGATTGTTTT+TGG + chr4_3:19894457-19894476 Msa0633760:CDS 20.0%
!!! TAATTTGTAGGATTGTTTTT+GGG + chr4_3:19894458-19894477 Msa0633760:CDS 20.0%
! TATTAACCACATAAATAGTG+AGG + chr4_3:19893610-19893629 Msa0633760:intron 25.0%
! GAATATTCTATTATGAAGAG+CGG - chr4_3:19893764-19893783 None:intergenic 25.0%
! TCATAATAGAATATTCGCTA+CGG + chr4_3:19893768-19893787 Msa0633760:intron 25.0%
!!! ACTACAACATTTTGATCATA+TGG - chr4_3:19894010-19894029 None:intergenic 25.0%
! CAAAATGTTGTAGTCATAAT+AGG + chr4_3:19894016-19894035 Msa0633760:CDS 25.0%
! TCCAATAGACCTATATTATA+TGG + chr4_3:19894202-19894221 Msa0633760:CDS 25.0%
! ACCATATAATATAGGTCTAT+TGG - chr4_3:19894206-19894225 None:intergenic 25.0%
!! TTTTGCTGACCATATAATAT+AGG - chr4_3:19894214-19894233 None:intergenic 25.0%
!!! TTTCACAATACACTGATTTT+TGG + chr4_3:19894263-19894282 Msa0633760:CDS 25.0%
! TTCAAATATGAGTGAGATAT+TGG + chr4_3:19894417-19894436 Msa0633760:CDS 25.0%
! ATTATATTCCATTCACAAGT+TGG + chr4_3:19894572-19894591 Msa0633760:CDS 25.0%
! AAGTTGGATTGATAAACTTA+GGG + chr4_3:19894588-19894607 Msa0633760:CDS 25.0%
! AGAGATTATTGATGAACATT+TGG + chr4_3:19894663-19894682 Msa0633760:CDS 25.0%
! TATTAACCACATAAATAGTG+AGG + chr4_3:19893610-19893629 Msa0633760:intron 25.0%
! GAATATTCTATTATGAAGAG+CGG - chr4_3:19893764-19893783 None:intergenic 25.0%
! TCATAATAGAATATTCGCTA+CGG + chr4_3:19893768-19893787 Msa0633760:intron 25.0%
!!! ACTACAACATTTTGATCATA+TGG - chr4_3:19894010-19894029 None:intergenic 25.0%
! CAAAATGTTGTAGTCATAAT+AGG + chr4_3:19894016-19894035 Msa0633760:CDS 25.0%
! TCCAATAGACCTATATTATA+TGG + chr4_3:19894202-19894221 Msa0633760:CDS 25.0%
! ACCATATAATATAGGTCTAT+TGG - chr4_3:19894206-19894225 None:intergenic 25.0%
!! TTTTGCTGACCATATAATAT+AGG - chr4_3:19894214-19894233 None:intergenic 25.0%
!!! TTTCACAATACACTGATTTT+TGG + chr4_3:19894263-19894282 Msa0633760:CDS 25.0%
! TTCAAATATGAGTGAGATAT+TGG + chr4_3:19894417-19894436 Msa0633760:CDS 25.0%
! ATTATATTCCATTCACAAGT+TGG + chr4_3:19894572-19894591 Msa0633760:CDS 25.0%
! AAGTTGGATTGATAAACTTA+GGG + chr4_3:19894588-19894607 Msa0633760:CDS 25.0%
! AGAGATTATTGATGAACATT+TGG + chr4_3:19894663-19894682 Msa0633760:CDS 25.0%
ATTGTTCTCACAAAATCCTT+TGG - chr4_3:19893116-19893135 None:intergenic 30.0%
AGGAAAATAATCTTAAGAGG+CGG + chr4_3:19893226-19893245 Msa0633760:CDS 30.0%
AATTGATGAGAGCAAAAAAG+AGG + chr4_3:19893308-19893327 Msa0633760:CDS 30.0%
TACTTGAGCTTAATTTCTCA+AGG - chr4_3:19893373-19893392 None:intergenic 30.0%
ATAGGCTTAATGTAGATCTA+CGG - chr4_3:19893400-19893419 None:intergenic 30.0%
AAAATGCCTCACTATTTATG+TGG - chr4_3:19893619-19893638 None:intergenic 30.0%
TTCTCACCGTTGTAAAAAAA+AGG - chr4_3:19893652-19893671 None:intergenic 30.0%
! CCAAGTTGAATTGAAAATAG+AGG - chr4_3:19894109-19894128 None:intergenic 30.0%
! CCTCTATTTTCAATTCAACT+TGG + chr4_3:19894106-19894125 Msa0633760:CDS 30.0%
!! ACAAGCTATTGTTGTTTCTT+CGG + chr4_3:19894135-19894154 Msa0633760:CDS 30.0%
ATTGGAAAACAAATGGTCAT+TGG - chr4_3:19894188-19894207 None:intergenic 30.0%
TAGGTCTATTGGAAAACAAA+TGG - chr4_3:19894195-19894214 None:intergenic 30.0%
TTATCAATCCAACTTGTGAA+TGG - chr4_3:19894583-19894602 None:intergenic 30.0%
! CAAGTTGGATTGATAAACTT+AGG + chr4_3:19894587-19894606 Msa0633760:CDS 30.0%
AGTTGGATTGATAAACTTAG+GGG + chr4_3:19894589-19894608 Msa0633760:CDS 30.0%
TCGTCTTGATAGAAATTTCA+AGG + chr4_3:19894621-19894640 Msa0633760:CDS 30.0%
TCATCTGTGTATTGTCTATT+TGG - chr4_3:19894691-19894710 None:intergenic 30.0%
ATTGTTCTCACAAAATCCTT+TGG - chr4_3:19893116-19893135 None:intergenic 30.0%
AGGAAAATAATCTTAAGAGG+CGG + chr4_3:19893226-19893245 Msa0633760:CDS 30.0%
AATTGATGAGAGCAAAAAAG+AGG + chr4_3:19893308-19893327 Msa0633760:CDS 30.0%
TACTTGAGCTTAATTTCTCA+AGG - chr4_3:19893373-19893392 None:intergenic 30.0%
ATAGGCTTAATGTAGATCTA+CGG - chr4_3:19893400-19893419 None:intergenic 30.0%
AAAATGCCTCACTATTTATG+TGG - chr4_3:19893619-19893638 None:intergenic 30.0%
TTCTCACCGTTGTAAAAAAA+AGG - chr4_3:19893652-19893671 None:intergenic 30.0%
! CCAAGTTGAATTGAAAATAG+AGG - chr4_3:19894109-19894128 None:intergenic 30.0%
! CCTCTATTTTCAATTCAACT+TGG + chr4_3:19894106-19894125 Msa0633760:CDS 30.0%
!! ACAAGCTATTGTTGTTTCTT+CGG + chr4_3:19894135-19894154 Msa0633760:CDS 30.0%
ATTGGAAAACAAATGGTCAT+TGG - chr4_3:19894188-19894207 None:intergenic 30.0%
TAGGTCTATTGGAAAACAAA+TGG - chr4_3:19894195-19894214 None:intergenic 30.0%
TTATCAATCCAACTTGTGAA+TGG - chr4_3:19894583-19894602 None:intergenic 30.0%
! CAAGTTGGATTGATAAACTT+AGG + chr4_3:19894587-19894606 Msa0633760:CDS 30.0%
AGTTGGATTGATAAACTTAG+GGG + chr4_3:19894589-19894608 Msa0633760:CDS 30.0%
TCGTCTTGATAGAAATTTCA+AGG + chr4_3:19894621-19894640 Msa0633760:CDS 30.0%
TCATCTGTGTATTGTCTATT+TGG - chr4_3:19894691-19894710 None:intergenic 30.0%
GAAGAAATTGAAGTCTACAG+TGG + chr4_3:19893144-19893163 Msa0633760:CDS 35.0%
GGCAGGAAAATAATCTTAAG+AGG + chr4_3:19893223-19893242 Msa0633760:intron 35.0%
ACCATGGTAAATCAAGTTCA+AGG + chr4_3:19893258-19893277 Msa0633760:CDS 35.0%
ACCTTGAACTTGATTTACCA+TGG - chr4_3:19893262-19893281 None:intergenic 35.0%
ATGAGAGCAAAAAAGAGGTA+AGG + chr4_3:19893313-19893332 Msa0633760:intron 35.0%
CGTTGTGGTAACTAATGAAA+GGG + chr4_3:19893674-19893693 Msa0633760:intron 35.0%
TGCAAAGTTTCTTAAGCCTA+CGG + chr4_3:19893844-19893863 Msa0633760:intron 35.0%
GATTTCGTAGAAAACTGCAA+CGG - chr4_3:19893881-19893900 None:intergenic 35.0%
!!! GGTTTTTTCGCATTTCACTA+CGG + chr4_3:19893971-19893990 Msa0633760:intron 35.0%
ACTGAGAGAAGTAGATTTCA+TGG + chr4_3:19894502-19894521 Msa0633760:CDS 35.0%
GTTGGATTGATAAACTTAGG+GGG + chr4_3:19894590-19894609 Msa0633760:CDS 35.0%
TAGACAATACACAGATGAAG+AGG + chr4_3:19894693-19894712 Msa0633760:CDS 35.0%
!! ATCACTTTTGACCACATCAA+AGG + chr4_3:19894769-19894788 Msa0633760:CDS 35.0%
GAAGAAATTGAAGTCTACAG+TGG + chr4_3:19893144-19893163 Msa0633760:CDS 35.0%
GGCAGGAAAATAATCTTAAG+AGG + chr4_3:19893223-19893242 Msa0633760:intron 35.0%
ACCATGGTAAATCAAGTTCA+AGG + chr4_3:19893258-19893277 Msa0633760:CDS 35.0%
ACCTTGAACTTGATTTACCA+TGG - chr4_3:19893262-19893281 None:intergenic 35.0%
ATGAGAGCAAAAAAGAGGTA+AGG + chr4_3:19893313-19893332 Msa0633760:intron 35.0%
CGTTGTGGTAACTAATGAAA+GGG + chr4_3:19893674-19893693 Msa0633760:intron 35.0%
TGCAAAGTTTCTTAAGCCTA+CGG + chr4_3:19893844-19893863 Msa0633760:intron 35.0%
GATTTCGTAGAAAACTGCAA+CGG - chr4_3:19893881-19893900 None:intergenic 35.0%
!!! GGTTTTTTCGCATTTCACTA+CGG + chr4_3:19893971-19893990 Msa0633760:intron 35.0%
ACTGAGAGAAGTAGATTTCA+TGG + chr4_3:19894502-19894521 Msa0633760:CDS 35.0%
GTTGGATTGATAAACTTAGG+GGG + chr4_3:19894590-19894609 Msa0633760:CDS 35.0%
TAGACAATACACAGATGAAG+AGG + chr4_3:19894693-19894712 Msa0633760:CDS 35.0%
!! ATCACTTTTGACCACATCAA+AGG + chr4_3:19894769-19894788 Msa0633760:CDS 35.0%
!! ACAGTGGATCATCAAGTTGA+AGG + chr4_3:19893160-19893179 Msa0633760:CDS 40.0%
GTGAGCAAATCTGAGAAGTA+AGG + chr4_3:19893202-19893221 Msa0633760:intron 40.0%
! GCTCTCATCAATTTTCTTCG+AGG - chr4_3:19893301-19893320 None:intergenic 40.0%
GACTATACTCTTAAGAGGCA+AGG + chr4_3:19893339-19893358 Msa0633760:intron 40.0%
GCGTTGTGGTAACTAATGAA+AGG + chr4_3:19893673-19893692 Msa0633760:intron 40.0%
!! TGAAAGGGTGTCTATGAGAA+CGG + chr4_3:19893689-19893708 Msa0633760:intron 40.0%
AACGGTAATCTTAACCTCCA+CGG + chr4_3:19893707-19893726 Msa0633760:intron 40.0%
!!! TATGAAGAGCGGTTTTGAAC+TGG - chr4_3:19893753-19893772 None:intergenic 40.0%
! GAATATTCGCTACGGTTTTG+AGG + chr4_3:19893776-19893795 Msa0633760:intron 40.0%
! GTTTTCTACGAAATCCGTAG+TGG + chr4_3:19893886-19893905 Msa0633760:intron 40.0%
GAAATGCGAAAAAACCGTTG+TGG - chr4_3:19893967-19893986 None:intergenic 40.0%
!!! CGCATTTCACTACGGTTTTT+TGG + chr4_3:19893979-19893998 Msa0633760:intron 40.0%
!!! TGTTTTTGGGAGAAGCTATG+AGG + chr4_3:19894471-19894490 Msa0633760:CDS 40.0%
!! ACAGTGGATCATCAAGTTGA+AGG + chr4_3:19893160-19893179 Msa0633760:CDS 40.0%
GTGAGCAAATCTGAGAAGTA+AGG + chr4_3:19893202-19893221 Msa0633760:intron 40.0%
! GCTCTCATCAATTTTCTTCG+AGG - chr4_3:19893301-19893320 None:intergenic 40.0%
GACTATACTCTTAAGAGGCA+AGG + chr4_3:19893339-19893358 Msa0633760:intron 40.0%
GCGTTGTGGTAACTAATGAA+AGG + chr4_3:19893673-19893692 Msa0633760:intron 40.0%
!! TGAAAGGGTGTCTATGAGAA+CGG + chr4_3:19893689-19893708 Msa0633760:intron 40.0%
AACGGTAATCTTAACCTCCA+CGG + chr4_3:19893707-19893726 Msa0633760:intron 40.0%
!!! TATGAAGAGCGGTTTTGAAC+TGG - chr4_3:19893753-19893772 None:intergenic 40.0%
! GAATATTCGCTACGGTTTTG+AGG + chr4_3:19893776-19893795 Msa0633760:intron 40.0%
! GTTTTCTACGAAATCCGTAG+TGG + chr4_3:19893886-19893905 Msa0633760:intron 40.0%
GAAATGCGAAAAAACCGTTG+TGG - chr4_3:19893967-19893986 None:intergenic 40.0%
!!! CGCATTTCACTACGGTTTTT+TGG + chr4_3:19893979-19893998 Msa0633760:intron 40.0%
!!! TGTTTTTGGGAGAAGCTATG+AGG + chr4_3:19894471-19894490 Msa0633760:CDS 40.0%
GCAAATCTGAGAAGTAAGGC+AGG + chr4_3:19893206-19893225 Msa0633760:intron 45.0%
GAGCAAAAAAGAGGTAAGGC+AGG + chr4_3:19893317-19893336 Msa0633760:intron 45.0%
GGCAGGACTATACTCTTAAG+AGG + chr4_3:19893334-19893353 Msa0633760:intron 45.0%
! TCACAACTTTTAAGCCACCG+TGG - chr4_3:19893727-19893746 None:intergenic 45.0%
AACGGCTCAGATAAAACCGT+AGG - chr4_3:19893863-19893882 None:intergenic 45.0%
GTTGTGCTTGCTTTCCACTA+CGG - chr4_3:19893903-19893922 None:intergenic 45.0%
AAACCGTTGTGGTTGGATAC+CGG - chr4_3:19893956-19893975 None:intergenic 45.0%
TGCGAAAAAACCGTTGTGGT+TGG - chr4_3:19893963-19893982 None:intergenic 45.0%
TCATGAGTGTCAAGCTTTGC+TGG + chr4_3:19894531-19894550 Msa0633760:CDS 45.0%
GATAAACTTAGGGGGTTGCA+TGG + chr4_3:19894598-19894617 Msa0633760:CDS 45.0%
GCAAATCTGAGAAGTAAGGC+AGG + chr4_3:19893206-19893225 Msa0633760:intron 45.0%
GAGCAAAAAAGAGGTAAGGC+AGG + chr4_3:19893317-19893336 Msa0633760:intron 45.0%
GGCAGGACTATACTCTTAAG+AGG + chr4_3:19893334-19893353 Msa0633760:intron 45.0%
! TCACAACTTTTAAGCCACCG+TGG - chr4_3:19893727-19893746 None:intergenic 45.0%
AACGGCTCAGATAAAACCGT+AGG - chr4_3:19893863-19893882 None:intergenic 45.0%
GTTGTGCTTGCTTTCCACTA+CGG - chr4_3:19893903-19893922 None:intergenic 45.0%
AAACCGTTGTGGTTGGATAC+CGG - chr4_3:19893956-19893975 None:intergenic 45.0%
TGCGAAAAAACCGTTGTGGT+TGG - chr4_3:19893963-19893982 None:intergenic 45.0%
TCATGAGTGTCAAGCTTTGC+TGG + chr4_3:19894531-19894550 Msa0633760:CDS 45.0%
GATAAACTTAGGGGGTTGCA+TGG + chr4_3:19894598-19894617 Msa0633760:CDS 45.0%
AAGTCTGTTGAACGGGCCAA+AGG + chr4_3:19893097-19893116 Msa0633760:CDS 50.0%
GAGGCGGATAAGATCTACCA+TGG + chr4_3:19893242-19893261 Msa0633760:CDS 50.0%
!! ACAACGGTGAGAAAGCGTTG+TGG + chr4_3:19893659-19893678 Msa0633760:intron 50.0%
GGTAATCTTAACCTCCACGG+TGG + chr4_3:19893710-19893729 Msa0633760:intron 50.0%
! CAACTTTTAAGCCACCGTGG+AGG - chr4_3:19893724-19893743 None:intergenic 50.0%
! GGATACCGGAACGGTTTTAC+CGG - chr4_3:19893942-19893961 None:intergenic 50.0%
GTTGTGGTTGGATACCGGAA+CGG - chr4_3:19893951-19893970 None:intergenic 50.0%
GTTCCGGTATCCAACCACAA+CGG + chr4_3:19893950-19893969 Msa0633760:intron 50.0%
GGGAGAAGCTATGAGGATGA+AGG + chr4_3:19894478-19894497 Msa0633760:CDS 50.0%
CCATGAGGACTCCTTTGATG+TGG - chr4_3:19894783-19894802 None:intergenic 50.0%
CCACATCAAAGGAGTCCTCA+TGG + chr4_3:19894780-19894799 Msa0633760:CDS 50.0%
AAGTCTGTTGAACGGGCCAA+AGG + chr4_3:19893097-19893116 Msa0633760:CDS 50.0%
GAGGCGGATAAGATCTACCA+TGG + chr4_3:19893242-19893261 Msa0633760:CDS 50.0%
!! ACAACGGTGAGAAAGCGTTG+TGG + chr4_3:19893659-19893678 Msa0633760:intron 50.0%
GGTAATCTTAACCTCCACGG+TGG + chr4_3:19893710-19893729 Msa0633760:intron 50.0%
! CAACTTTTAAGCCACCGTGG+AGG - chr4_3:19893724-19893743 None:intergenic 50.0%
! GGATACCGGAACGGTTTTAC+CGG - chr4_3:19893942-19893961 None:intergenic 50.0%
GTTGTGGTTGGATACCGGAA+CGG - chr4_3:19893951-19893970 None:intergenic 50.0%
GTTCCGGTATCCAACCACAA+CGG + chr4_3:19893950-19893969 Msa0633760:intron 50.0%
GGGAGAAGCTATGAGGATGA+AGG + chr4_3:19894478-19894497 Msa0633760:CDS 50.0%
CCATGAGGACTCCTTTGATG+TGG - chr4_3:19894783-19894802 None:intergenic 50.0%
CCACATCAAAGGAGTCCTCA+TGG + chr4_3:19894780-19894799 Msa0633760:CDS 50.0%
TTTACCGGCGTGGCAAACTG+AGG - chr4_3:19893927-19893946 None:intergenic 55.0%
TTTACCGGCGTGGCAAACTG+AGG - chr4_3:19893927-19893946 None:intergenic 55.0%
AACGCCTCAGTTTGCCACGC+CGG + chr4_3:19893920-19893939 Msa0633760:intron 60.0%
CCACGCCGGTAAAACCGTTC+CGG + chr4_3:19893934-19893953 Msa0633760:intron 60.0%
AACGCCTCAGTTTGCCACGC+CGG + chr4_3:19893920-19893939 Msa0633760:intron 60.0%
CCACGCCGGTAAAACCGTTC+CGG + chr4_3:19893934-19893953 Msa0633760:intron 60.0%
! CCGGAACGGTTTTACCGGCG+TGG - chr4_3:19893937-19893956 None:intergenic 65.0%
! CCGGAACGGTTTTACCGGCG+TGG - chr4_3:19893937-19893956 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 19893094 19894807 19893094 ID=Msa0633760;Name=Msa0633760
chr4_3 mRNA 19893094 19894807 19893094 ID=Msa0633760-mRNA-1;Parent=Msa0633760;Name=Msa0633760-mRNA-1;_AED=0.37;_eAED=0.51;_QI=0|0|0|1|0|0.33|3|0|343
chr4_3 exon 19893094 19893218 19893094 ID=Msa0633760-mRNA-1:exon:5362;Parent=Msa0633760-mRNA-1
chr4_3 exon 19893224 19893329 19893224 ID=Msa0633760-mRNA-1:exon:5363;Parent=Msa0633760-mRNA-1
chr4_3 exon 19894007 19894807 19894007 ID=Msa0633760-mRNA-1:exon:5364;Parent=Msa0633760-mRNA-1
chr4_3 CDS 19893094 19893218 19893094 ID=Msa0633760-mRNA-1:cds;Parent=Msa0633760-mRNA-1
chr4_3 CDS 19893224 19893329 19893224 ID=Msa0633760-mRNA-1:cds;Parent=Msa0633760-mRNA-1
chr4_3 CDS 19894007 19894807 19894007 ID=Msa0633760-mRNA-1:cds;Parent=Msa0633760-mRNA-1
Gene Sequence

>Msa0633760

ATGAAGTCTGTTGAACGGGCCAAAGGATTTTGTGAGAACAATAGTCTTGAGAAGAAATTGAAGTCTACAGTGGATCATCAAGTTGAAGGTTCAACTCTGAGAAATGACGTGAGCAAATCTGAGAAGCAGGAAAATAATCTTAAGAGGCGGATAAGATCTACCATGGTAAATCAAGTTCAAGGTTCAATTGAATCACATGCCTCGAAGAAAATTGATGAGAGCAAAAAAGAGCCATATGATCAAAATGTTGTAGTCATAATAGGAAATCTTCATCAACTAGACATTCCTAATCTTTATCTTCAATTTTCTCAATTCTCAAAAATATATGGTCCTCTATTTTCAATTCAACTTGGACTAAGACAAGCTATTGTTGTTTCTTCGGCTGAAATTGCAAAAGAAGTATTGAAAACCAATGACCATTTGTTTTCCAATAGACCTATATTATATGGTCAGCAAAAATTGTTTTATAATGGGTCAGAAATCTTTTTTTCACAATACACTGATTTTTGGAGAGAAATAAGAAAAATTTGTGTTGTTCATATATTTAGTTCAATACGTGTGTCATATTATTCTTCTATAAGAAATTTTGAGGTGAAGAAAATGATCAAAAAAATTTCAGGGCATGCTAGTTCAGCAAGTGTTTCAAATATGAGTGAGATATTGGTATCTCTTTCAAGTACTATAATTTGTAGGATTGTTTTTGGGAGAAGCTATGAGGATGAAGGAACTGAGAGAAGTAGATTTCATGGAATGTTTCATGAGTGTCAAGCTTTGCTGGCAGAAATATTTGTTTCTGATTATATTCCATTCACAAGTTGGATTGATAAACTTAGGGGGTTGCATGGTCGTCTTGATAGAAATTTCAAGGAGTTTGATGATTTTTATCAAGAGATTATTGATGAACATTTGGATCCAAATAGACAATACACAGATGAAGAGGTTATTGTTGATGTCTTGCTTCAACTTAAGAAAAAGCGTTCATTTTCTTTTGATATCACTTTTGACCACATCAAAGGAGTCCTCATGGTATGA
Protein sequence

>Msa0633760

MKSVERAKGFCENNSLEKKLKSTVDHQVEGSTLRNDVSKSEKQENNLKRRIRSTMVNQVQGSIESHASKKIDESKKEPYDQNVVVIIGNLHQLDIPNLYLQFSQFSKIYGPLFSIQLGLRQAIVVSSAEIAKEVLKTNDHLFSNRPILYGQQKLFYNGSEIFFSQYTDFWREIRKICVVHIFSSIRVSYYSSIRNFEVKKMIKKISGHASSASVSNMSEILVSLSSTIICRIVFGRSYEDEGTERSRFHGMFHECQALLAEIFVSDYIPFTSWIDKLRGLHGRLDRNFKEFDDFYQEIIDEHLDPNRQYTDEEVIVDVLLQLKKKRSFSFDITFDHIKGVLMV*