AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025260 MtrunA17_Chr7g0243261 93.529 170 3 1 1 162 1 170 1.00e-112 317
Msa1025260 MtrunA17_Chr4g0005561 80.000 170 26 1 1 162 1 170 3.96e-96 275
Msa1025260 MtrunA17_Chr5g0418311 47.222 180 77 3 1 162 1 180 4.92e-54 169
Msa1025260 MtrunA17_Chr4g0061181 45.402 174 83 3 1 162 1 174 3.77e-48 154
Msa1025260 MtrunA17_Chr7g0269431 41.772 79 44 2 48 125 33 110 4.55e-15 68.2
Msa1025260 MtrunA17_Chr1g0195361 28.421 95 66 2 48 141 35 128 1.74e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025260 AT3G08890.1 75.294 170 34 1 1 162 1 170 4.75e-95 272
Msa1025260 AT3G08890.2 75.294 170 34 1 1 162 1 170 4.75e-95 272
Msa1025260 AT5G37070.1 74.118 170 36 1 1 162 1 170 1.05e-91 264
Msa1025260 AT5G01610.2 68.824 170 45 1 1 162 1 170 2.83e-87 253
Msa1025260 AT5G01610.1 68.824 170 45 1 1 162 1 170 2.83e-87 253
Msa1025260 AT2G03350.1 47.619 168 76 3 7 162 12 179 3.33e-48 154
Msa1025260 AT1G02816.1 28.696 115 79 2 49 160 35 149 1.55e-14 67.8
Msa1025260 AT4G02360.1 31.068 103 69 2 48 149 31 132 4.50e-13 63.5
Msa1025260 AT4G02370.1 30.526 95 65 1 48 141 34 128 5.25e-13 63.5

Find 46 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTCACAACTACTGTTTC+TGG 0.191177 7_1:-55645834 Msa1025260:CDS
AGAAGAGTGGTTGGTGAATC+TGG 0.237015 7_1:-55648358 Msa1025260:five_prime_UTR
TGGCTCGTCAACAAATTAAA+AGG 0.258287 7_1:-55646395 Msa1025260:intron
TGAACAAGGTTGGATCTTAC+TGG 0.286424 7_1:-55648318 Msa1025260:CDS
AACTACTGTTTCTGGTTACT+TGG 0.322844 7_1:-55645826 Msa1025260:CDS
AGGAAAGCTAGCTGATATAG+AGG 0.343413 7_1:-55645799 Msa1025260:CDS
CTCATAGTTTGTTGCGTCGC+GGG 0.350732 7_1:+55645935 None:intergenic
TAATTTGTTGACGAGCCATT+TGG 0.400342 7_1:+55646400 None:intergenic
GACAGAGTTGAGTTCCTTGT+TGG 0.400423 7_1:+55648282 None:intergenic
CCAGCAGTGAAGTGCAGCTT+TGG 0.409039 7_1:+55645720 None:intergenic
CTTTGGTCCCTCGGATGTAA+TGG 0.437677 7_1:+55645737 None:intergenic
GTTTCTGGTTACTTGGAGAA+AGG 0.453263 7_1:-55645819 Msa1025260:CDS
GCATGAAGAAAACAAGGAAA+AGG 0.453741 7_1:-55645698 Msa1025260:CDS
CCAAAGCTGCACTTCACTGC+TGG 0.476094 7_1:-55645720 Msa1025260:CDS
GTAGAGAGAAGAAGAGTGGT+TGG 0.485096 7_1:-55648367 Msa1025260:five_prime_UTR
TCGCGGGGAAAGATTCCTAT+TGG 0.487217 7_1:+55645951 None:intergenic
TCACTGTCAAGCAGCATTGA+AGG 0.491753 7_1:-55646428 Msa1025260:CDS
AAGGAGTATGATCTACCAAT+AGG 0.492134 7_1:-55645966 Msa1025260:CDS
ATTCCTCAAGTGTGTGAAGT+AGG 0.513172 7_1:-55645879 Msa1025260:CDS
GGTTGGTGAATCTGGGTGAA+TGG 0.514189 7_1:-55648350 Msa1025260:exon
GAAGTGCAGCTTTGGTCCCT+CGG 0.517935 7_1:+55645728 None:intergenic
GAAGAGTGGTTGGTGAATCT+GGG 0.518190 7_1:-55648357 Msa1025260:five_prime_UTR
CATGAAGAAAACAAGGAAAA+GGG 0.522722 7_1:-55645697 Msa1025260:CDS
TTTCACCCACACCAACACTT+TGG 0.523358 7_1:+55645767 None:intergenic
GATCAGGTATTGAACAAGGT+TGG 0.526839 7_1:-55648328 Msa1025260:CDS
TGAATCTGGGTGAATGGATC+AGG 0.543188 7_1:-55648344 Msa1025260:exon
TCATAGTTTGTTGCGTCGCG+GGG 0.545453 7_1:+55645936 None:intergenic
CTGCTGGCATGAAGAAAACA+AGG 0.556882 7_1:-55645704 Msa1025260:CDS
GCATATGAAGTTTCTAGAGA+TGG 0.564091 7_1:-55645672 Msa1025260:CDS
GGAAAGCTAGCTGATATAGA+GGG 0.565162 7_1:-55645798 Msa1025260:CDS
TTTCGTAGAGAGAAGAAGAG+TGG 0.588907 7_1:-55648371 Msa1025260:five_prime_UTR
ACTCATAGTTTGTTGCGTCG+CGG 0.599993 7_1:+55645934 None:intergenic
ACTCTTCTTCTCTCTACGAA+AGG 0.603991 7_1:+55648373 None:intergenic
TGAAGACCAAAGTGTTGGTG+TGG 0.610783 7_1:-55645773 Msa1025260:CDS
GGGAATGAAGACCAAAGTGT+TGG 0.613612 7_1:-55645778 Msa1025260:CDS
AACAAGGAACTCAACTCTGT+CGG 0.617344 7_1:-55648280 Msa1025260:CDS
GTTCAGCAAGAAAGCCAACA+AGG 0.625594 7_1:-55648296 Msa1025260:CDS
TAGCCTACTTCACACACTTG+AGG 0.632117 7_1:+55645876 None:intergenic
GCCATTAACAGAGTTGCTGA+AGG 0.634031 7_1:-55645985 Msa1025260:intron
GCATTGAAGGAGGAACCAAA+TGG 0.635369 7_1:-55646415 Msa1025260:CDS
ATAATTAAGAATAAGCCCAA+TGG 0.636731 7_1:-55648483 None:intergenic
CTGTCAAGCAGCATTGAAGG+AGG 0.660543 7_1:-55646425 Msa1025260:CDS
AGTTACCGCCATTACATCCG+AGG 0.662266 7_1:-55645745 Msa1025260:CDS
AATGGATCAGGTATTGAACA+AGG 0.667362 7_1:-55648332 Msa1025260:CDS
GTTACCGCCATTACATCCGA+GGG 0.676710 7_1:-55645744 Msa1025260:CDS
GAAGACCAAAGTGTTGGTGT+GGG 0.680068 7_1:-55645772 Msa1025260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAAAAGAGTAAAAA+GGG + chr7_1:55645921-55645940 None:intergenic 10.0%
!! AATAATAAAAAAGAGTAAAA+AGG + chr7_1:55645922-55645941 None:intergenic 10.0%
!!! ATAAATAAATAAAAGTTTTG+GGG - chr7_1:55646448-55646467 Msa1025260:intron 10.0%
!! TAATAAAAAAGAGTAAAAAG+GGG + chr7_1:55645920-55645939 None:intergenic 15.0%
!!! TAAATAAATAAAAGTTTTGG+GGG - chr7_1:55646449-55646468 Msa1025260:intron 15.0%
!! TAAATATTCTACTTTGATTA+AGG - chr7_1:55647843-55647862 Msa1025260:intron 15.0%
!! AATAAAGATAATATAAGCTA+TGG - chr7_1:55647943-55647962 Msa1025260:intron 15.0%
!! AATAAAAAAGAGTAAAAAGG+GGG + chr7_1:55645919-55645938 None:intergenic 20.0%
!!! TTTTCCTCTTTTTTTTTAGT+TGG - chr7_1:55645962-55645981 Msa1025260:CDS 20.0%
!!! TATTTGTCGAATTTTAAATC+TGG - chr7_1:55646175-55646194 Msa1025260:intron 20.0%
!!! AATTTTTCATGCATAATATG+TGG - chr7_1:55647115-55647134 Msa1025260:intron 20.0%
!!! ATTTTTCATGCATAATATGT+GGG - chr7_1:55647116-55647135 Msa1025260:intron 20.0%
!! AATTAAACTGTATCTAAACA+GGG + chr7_1:55647869-55647888 None:intergenic 20.0%
!! TAATTAAACTGTATCTAAAC+AGG + chr7_1:55647870-55647889 None:intergenic 20.0%
!!! ACTTAATTGAACTTATTTTC+TGG + chr7_1:55648056-55648075 None:intergenic 20.0%
! ATAAAAAAGAGTAAAAAGGG+GGG + chr7_1:55645918-55645937 None:intergenic 25.0%
! GTATCCAACTAAAAAAAAAG+AGG + chr7_1:55645969-55645988 None:intergenic 25.0%
!!! TGATAATGACAATGACATTT+TGG - chr7_1:55646546-55646565 Msa1025260:intron 25.0%
! ACTCATAAAAAGATTGATCA+AGG + chr7_1:55646839-55646858 None:intergenic 25.0%
!!! CAGATTGATTTTTTAATGTC+AGG + chr7_1:55647216-55647235 None:intergenic 25.0%
! ATATATCAATCTATAGACAC+AGG + chr7_1:55647280-55647299 None:intergenic 25.0%
! ATTTGTCCATTTATCTTTAC+TGG - chr7_1:55647391-55647410 Msa1025260:intron 25.0%
! ATTTCTTTGATCTGAATATG+AGG - chr7_1:55647515-55647534 Msa1025260:intron 25.0%
! TTTCTTTGATCTGAATATGA+GGG - chr7_1:55647516-55647535 Msa1025260:intron 25.0%
! TTTATCCCATTTACTGATAA+TGG - chr7_1:55647561-55647580 Msa1025260:intron 25.0%
! GATTTCCATTATCAGTAAAT+GGG + chr7_1:55647569-55647588 None:intergenic 25.0%
! TGATTTCCATTATCAGTAAA+TGG + chr7_1:55647570-55647589 None:intergenic 25.0%
! TTATATTAACACTCTTCCTT+TGG - chr7_1:55647669-55647688 Msa1025260:intron 25.0%
!!! CTAATCTTTTTCAGACCATT+GGG + chr7_1:55645664-55645683 None:intergenic 30.0%
!!! ACTAATCTTTTTCAGACCAT+TGG + chr7_1:55645665-55645684 None:intergenic 30.0%
TAAGAATCATAAGCAAGACA+TGG + chr7_1:55646010-55646029 None:intergenic 30.0%
!! CTCAGCTATCTGATTTTAAT+TGG - chr7_1:55646131-55646150 Msa1025260:intron 30.0%
!!! AGCTATCTGATTTTAATTGG+TGG - chr7_1:55646134-55646153 Msa1025260:intron 30.0%
AGAACTGTAAAATTCGGATT+GGG - chr7_1:55646472-55646491 Msa1025260:intron 30.0%
!!! AATGACATTTTGGTTGTGAT+TGG - chr7_1:55646556-55646575 Msa1025260:intron 30.0%
!!! ATGACATTTTGGTTGTGATT+GGG - chr7_1:55646557-55646576 Msa1025260:intron 30.0%
CTGGCACATAAACATTAATT+GGG + chr7_1:55646659-55646678 None:intergenic 30.0%
!!! GCATGAATTCTAGAATGTTT+TGG - chr7_1:55646767-55646786 Msa1025260:intron 30.0%
!! GTAAAAGTATTAAGTAGTGC+TGG - chr7_1:55646870-55646889 Msa1025260:intron 30.0%
GGGTTTAGTGAATAGAAATT+AGG - chr7_1:55647136-55647155 Msa1025260:intron 30.0%
AATAGAAATTAGGAAGCCTA+AGG - chr7_1:55647146-55647165 Msa1025260:intron 30.0%
AAAGTCTCACATTTATCCTT+AGG + chr7_1:55647165-55647184 None:intergenic 30.0%
TAAGGATAAATGTGAGACTT+TGG - chr7_1:55647164-55647183 Msa1025260:intron 30.0%
AACTGTCCAGTAAAGATAAA+TGG + chr7_1:55647400-55647419 None:intergenic 30.0%
!! TTGAAACTTTTCGCTTTGTT+TGG - chr7_1:55647418-55647437 Msa1025260:intron 30.0%
!!! TGAAACTTTTCGCTTTGTTT+GGG - chr7_1:55647419-55647438 Msa1025260:intron 30.0%
! CTTTGTTTGGGAAAATATGT+TGG - chr7_1:55647431-55647450 Msa1025260:intron 30.0%
TAATGACTTAACAATTGCCT+TGG - chr7_1:55647459-55647478 Msa1025260:intron 30.0%
AACAAAGAACTAGAAAACCA+AGG + chr7_1:55647479-55647498 None:intergenic 30.0%
!!! TTGGTTTTCTAGTTCTTTGT+TGG - chr7_1:55647478-55647497 Msa1025260:intron 30.0%
AAATCATTTGTGAGTCTTGA+GGG - chr7_1:55647584-55647603 Msa1025260:intron 30.0%
! TTCAACATTTGCTAGTCTAA+TGG + chr7_1:55647621-55647640 None:intergenic 30.0%
ACAGTGACTAAAAAAACCAA+AGG + chr7_1:55647688-55647707 None:intergenic 30.0%
! TTTTTCTGTGTTTCTCAATC+AGG - chr7_1:55647779-55647798 Msa1025260:intron 30.0%
!!! ATGTCGTAAGCTATTTTTGT+TGG - chr7_1:55648000-55648019 Msa1025260:intron 30.0%
CATGTTAGAGGGTAAAATTA+AGG + chr7_1:55648092-55648111 None:intergenic 30.0%
! CTTAATTTTACCCTCTAACA+TGG - chr7_1:55648090-55648109 Msa1025260:intron 30.0%
CATGAAGAAAACAAGGAAAA+GGG - chr7_1:55648432-55648451 Msa1025260:five_prime_UTR 30.0%
!! AATGGATCAGGTATTGAACA+AGG - chr7_1:55645797-55645816 Msa1025260:CDS 35.0%
ACACATACATGCATGTACTT+TGG - chr7_1:55646086-55646105 Msa1025260:intron 35.0%
CACATACATGCATGTACTTT+GGG - chr7_1:55646087-55646106 Msa1025260:intron 35.0%
ATTCTCTTCACAAAGGAAGT+CGG + chr7_1:55646202-55646221 None:intergenic 35.0%
TTGAGATCGTACAACCAAAT+TGG + chr7_1:55646231-55646250 None:intergenic 35.0%
! TGAGTCGAGATATGTTCTTT+TGG - chr7_1:55646368-55646387 Msa1025260:intron 35.0%
! GAGTCGAGATATGTTCTTTT+GGG - chr7_1:55646369-55646388 Msa1025260:intron 35.0%
CCAAGTAAGTTTCATATCCA+GGG + chr7_1:55646400-55646419 None:intergenic 35.0%
TCCAAGTAAGTTTCATATCC+AGG + chr7_1:55646401-55646420 None:intergenic 35.0%
GAGAACTGTAAAATTCGGAT+TGG - chr7_1:55646471-55646490 Msa1025260:intron 35.0%
GAACTGTAAAATTCGGATTG+GGG - chr7_1:55646473-55646492 Msa1025260:intron 35.0%
! AACTGTAAAATTCGGATTGG+GGG - chr7_1:55646474-55646493 Msa1025260:intron 35.0%
TAAAGTCACATGATGCACAA+AGG + chr7_1:55646619-55646638 None:intergenic 35.0%
CCTGGCACATAAACATTAAT+TGG + chr7_1:55646660-55646679 None:intergenic 35.0%
CCAATTAATGTTTATGTGCC+AGG - chr7_1:55646657-55646676 Msa1025260:intron 35.0%
GATTGGTAGGCTTAAAAACT+TGG + chr7_1:55646686-55646705 None:intergenic 35.0%
! TTTTAAGCCTACCAATCTAG+CGG - chr7_1:55646689-55646708 Msa1025260:intron 35.0%
!! CATGTGAAGCATTGGTTTAT+CGG - chr7_1:55646718-55646737 Msa1025260:intron 35.0%
! TGGTTTGTGTATCAGTAAAG+AGG - chr7_1:55646787-55646806 Msa1025260:intron 35.0%
GGTTTGTGTATCAGTAAAGA+GGG - chr7_1:55646788-55646807 Msa1025260:intron 35.0%
GTTTGTGTATCAGTAAAGAG+GGG - chr7_1:55646789-55646808 Msa1025260:intron 35.0%
TCAGAAGAGAAATACAGTCA+CGG + chr7_1:55646899-55646918 None:intergenic 35.0%
CTACATATGAGTTTACCAGT+AGG - chr7_1:55646922-55646941 Msa1025260:intron 35.0%
GTATTCAACATGGGAAATCA+AGG + chr7_1:55646952-55646971 None:intergenic 35.0%
GATTTCCCATGTTGAATACT+TGG - chr7_1:55646953-55646972 Msa1025260:intron 35.0%
GAACACCAAGTATTCAACAT+GGG + chr7_1:55646961-55646980 None:intergenic 35.0%
AGAACACCAAGTATTCAACA+TGG + chr7_1:55646962-55646981 None:intergenic 35.0%
!!! GTTTATTTTGCCTCTGTTGT+AGG - chr7_1:55647020-55647039 Msa1025260:intron 35.0%
TAAATGGACAAATACCTCTC+CGG + chr7_1:55647384-55647403 None:intergenic 35.0%
TTTGATCTGAATATGAGGGA+AGG - chr7_1:55647520-55647539 Msa1025260:intron 35.0%
GAAATCATTTGTGAGTCTTG+AGG - chr7_1:55647583-55647602 Msa1025260:intron 35.0%
!! TAATTTGTTGACGAGCCATT+TGG + chr7_1:55647732-55647751 None:intergenic 35.0%
TGGCTCGTCAACAAATTAAA+AGG - chr7_1:55647734-55647753 Msa1025260:intron 35.0%
! TTTTACCCTCTAACATGGTA+AGG - chr7_1:55648095-55648114 Msa1025260:intron 35.0%
TGATACCTTACCATGTTAGA+GGG + chr7_1:55648103-55648122 None:intergenic 35.0%
ATGATACCTTACCATGTTAG+AGG + chr7_1:55648104-55648123 None:intergenic 35.0%
!! ATGGTAAGGTATCATTTTGC+AGG - chr7_1:55648109-55648128 Msa1025260:intron 35.0%
! AAGGAGTATGATCTACCAAT+AGG - chr7_1:55648163-55648182 Msa1025260:intron 35.0%
!! AACTACTGTTTCTGGTTACT+TGG - chr7_1:55648303-55648322 Msa1025260:CDS 35.0%
GCATGAAGAAAACAAGGAAA+AGG - chr7_1:55648431-55648450 Msa1025260:five_prime_UTR 35.0%
! GCATATGAAGTTTCTAGAGA+TGG - chr7_1:55648457-55648476 Msa1025260:five_prime_UTR 35.0%
ACTCTTCTTCTCTCTACGAA+AGG + chr7_1:55645759-55645778 None:intergenic 40.0%
TTTCGTAGAGAGAAGAAGAG+TGG - chr7_1:55645758-55645777 Msa1025260:CDS 40.0%
!! GATCAGGTATTGAACAAGGT+TGG - chr7_1:55645801-55645820 Msa1025260:CDS 40.0%
TGAACAAGGTTGGATCTTAC+TGG - chr7_1:55645811-55645830 Msa1025260:CDS 40.0%
AACAAGGAACTCAACTCTGT+CGG - chr7_1:55645849-55645868 Msa1025260:CDS 40.0%
TTCCTTTGTGAAGAGAATCC+AGG - chr7_1:55646204-55646223 Msa1025260:intron 40.0%
AAGAGAATCCAGGACCAATT+TGG - chr7_1:55646214-55646233 Msa1025260:intron 40.0%
! GTCGATTGATTTCGAATCGA+TGG - chr7_1:55646301-55646320 Msa1025260:intron 40.0%
CCCTGGATATGAAACTTACT+TGG - chr7_1:55646397-55646416 Msa1025260:CDS 40.0%
TGGGGGAGAACTGTAAAATT+CGG - chr7_1:55646466-55646485 Msa1025260:intron 40.0%
TGGGGGAGAACTGTAAAATT+CGG - chr7_1:55646466-55646485 Msa1025260:intron 40.0%
!!! ACATTTTGGTTGTGATTGGG+AGG - chr7_1:55646560-55646579 Msa1025260:intron 40.0%
!!! CATTTTGGTTGTGATTGGGA+GGG - chr7_1:55646561-55646580 Msa1025260:intron 40.0%
!!! ATTTTGGTTGTGATTGGGAG+GGG - chr7_1:55646562-55646581 Msa1025260:intron 40.0%
GGCGGTTTAACTAGTAAACT+AGG - chr7_1:55646585-55646604 Msa1025260:intron 40.0%
TGTGCATCATGTGACTTTAG+AGG - chr7_1:55646620-55646639 Msa1025260:intron 40.0%
GGCTTAAAAACTTGGATTCC+TGG + chr7_1:55646678-55646697 None:intergenic 40.0%
ACATGTTTATGCCGCTAGAT+TGG + chr7_1:55646703-55646722 None:intergenic 40.0%
GGCATAAACATGTGAAGCAT+TGG - chr7_1:55646710-55646729 Msa1025260:intron 40.0%
TTGCCTCTGTTGTAGGATAT+TGG - chr7_1:55647027-55647046 Msa1025260:intron 40.0%
ACTCCAATATCCTACAACAG+AGG + chr7_1:55647033-55647052 None:intergenic 40.0%
TAAATGTGAGACTTTGGCGT+TGG - chr7_1:55647170-55647189 Msa1025260:intron 40.0%
AAATGTGAGACTTTGGCGTT+GGG - chr7_1:55647171-55647190 Msa1025260:intron 40.0%
!!! ATCAATTTTGAAGCTGACGC+CGG - chr7_1:55647362-55647381 Msa1025260:intron 40.0%
TCCTTCAGCAACTCTGTTAA+TGG + chr7_1:55648148-55648167 None:intergenic 40.0%
ATTCCTCAAGTGTGTGAAGT+AGG - chr7_1:55648250-55648269 Msa1025260:intron 40.0%
!! GTTTCTGGTTACTTGGAGAA+AGG - chr7_1:55648310-55648329 Msa1025260:CDS 40.0%
AGGAAAGCTAGCTGATATAG+AGG - chr7_1:55648330-55648349 Msa1025260:CDS 40.0%
GGAAAGCTAGCTGATATAGA+GGG - chr7_1:55648331-55648350 Msa1025260:CDS 40.0%
GTAGAGAGAAGAAGAGTGGT+TGG - chr7_1:55645762-55645781 Msa1025260:CDS 45.0%
!! AGAAGAGTGGTTGGTGAATC+TGG - chr7_1:55645771-55645790 Msa1025260:CDS 45.0%
!! GAAGAGTGGTTGGTGAATCT+GGG - chr7_1:55645772-55645791 Msa1025260:CDS 45.0%
TGAATCTGGGTGAATGGATC+AGG - chr7_1:55645785-55645804 Msa1025260:CDS 45.0%
GTTCAGCAAGAAAGCCAACA+AGG - chr7_1:55645833-55645852 Msa1025260:CDS 45.0%
GACAGAGTTGAGTTCCTTGT+TGG + chr7_1:55645850-55645869 None:intergenic 45.0%
GTCCTGGATTCTCTTCACAA+AGG + chr7_1:55646209-55646228 None:intergenic 45.0%
TCGTACAACCAAATTGGTCC+TGG + chr7_1:55646225-55646244 None:intergenic 45.0%
!!! TGTTCTTTTGGGATTCTCCC+TGG - chr7_1:55646380-55646399 Msa1025260:intron 45.0%
!! TTTTGGTTGTGATTGGGAGG+GGG - chr7_1:55646563-55646582 Msa1025260:intron 45.0%
GTTTATGCCGCTAGATTGGT+AGG + chr7_1:55646699-55646718 None:intergenic 45.0%
GGTGACAGCTTGATTCCAAA+GGG + chr7_1:55646818-55646837 None:intergenic 45.0%
AGGTGACAGCTTGATTCCAA+AGG + chr7_1:55646819-55646838 None:intergenic 45.0%
GGAAATCAAGGAAAGCCTAC+TGG + chr7_1:55646940-55646959 None:intergenic 45.0%
! TCACTGTCAAGCAGCATTGA+AGG - chr7_1:55647701-55647720 Msa1025260:intron 45.0%
GCATTGAAGGAGGAACCAAA+TGG - chr7_1:55647714-55647733 Msa1025260:intron 45.0%
GCCATTAACAGAGTTGCTGA+AGG - chr7_1:55648144-55648163 Msa1025260:intron 45.0%
!! ACTCATAGTTTGTTGCGTCG+CGG + chr7_1:55648198-55648217 None:intergenic 45.0%
TAGCCTACTTCACACACTTG+AGG + chr7_1:55648256-55648275 None:intergenic 45.0%
CGCTTCACAACTACTGTTTC+TGG - chr7_1:55648295-55648314 Msa1025260:CDS 45.0%
GGGAATGAAGACCAAAGTGT+TGG - chr7_1:55648351-55648370 Msa1025260:exon 45.0%
!! TGAAGACCAAAGTGTTGGTG+TGG - chr7_1:55648356-55648375 Msa1025260:five_prime_UTR 45.0%
!! GAAGACCAAAGTGTTGGTGT+GGG - chr7_1:55648357-55648376 Msa1025260:five_prime_UTR 45.0%
TTTCACCCACACCAACACTT+TGG + chr7_1:55648365-55648384 None:intergenic 45.0%
CTGCTGGCATGAAGAAAACA+AGG - chr7_1:55648425-55648444 Msa1025260:five_prime_UTR 45.0%
!! TATTTATTTATAAAAAAACA+CGG + chr7_1:55646439-55646458 None:intergenic 5.0%
!!! TTATAAATAAATAAAAGTTT+TGG - chr7_1:55646446-55646465 Msa1025260:intron 5.0%
!!! TATAAATAAATAAAAGTTTT+GGG - chr7_1:55646447-55646466 Msa1025260:intron 5.0%
!! GGTTGGTGAATCTGGGTGAA+TGG - chr7_1:55645779-55645798 Msa1025260:CDS 50.0%
! AAAAGGGGGGTGTAGCAGTA+GGG + chr7_1:55645905-55645924 None:intergenic 50.0%
! AAAAAGGGGGGTGTAGCAGT+AGG + chr7_1:55645906-55645925 None:intergenic 50.0%
TTTGGTTGTGATTGGGAGGG+GGG - chr7_1:55646564-55646583 Msa1025260:intron 50.0%
AGTAAAGAGGGGCTACCCTT+TGG - chr7_1:55646800-55646819 Msa1025260:intron 50.0%
! CTGTCAAGCAGCATTGAAGG+AGG - chr7_1:55647704-55647723 Msa1025260:intron 50.0%
TCGCGGGGAAAGATTCCTAT+TGG + chr7_1:55648181-55648200 None:intergenic 50.0%
!! TCATAGTTTGTTGCGTCGCG+GGG + chr7_1:55648196-55648215 None:intergenic 50.0%
!! CTCATAGTTTGTTGCGTCGC+GGG + chr7_1:55648197-55648216 None:intergenic 50.0%
AGTTACCGCCATTACATCCG+AGG - chr7_1:55648384-55648403 Msa1025260:five_prime_UTR 50.0%
GTTACCGCCATTACATCCGA+GGG - chr7_1:55648385-55648404 Msa1025260:five_prime_UTR 50.0%
CTTTGGTCCCTCGGATGTAA+TGG + chr7_1:55648395-55648414 None:intergenic 50.0%
! TGGCGTTGGGCACAGGATTA+TGG - chr7_1:55647184-55647203 Msa1025260:intron 55.0%
!!! TTTTGAAGCTGACGCCGGAG+AGG - chr7_1:55647367-55647386 Msa1025260:intron 55.0%
TGGTCCCTCGGATGTAATGG+CGG + chr7_1:55648392-55648411 None:intergenic 55.0%
! GAAGTGCAGCTTTGGTCCCT+CGG + chr7_1:55648404-55648423 None:intergenic 55.0%
CCAGCAGTGAAGTGCAGCTT+TGG + chr7_1:55648412-55648431 None:intergenic 55.0%
CCAAAGCTGCACTTCACTGC+TGG - chr7_1:55648409-55648428 Msa1025260:five_prime_UTR 55.0%
! GAGACTTTGGCGTTGGGCAC+AGG - chr7_1:55647177-55647196 Msa1025260:intron 60.0%
GGTTGTGATTGGGAGGGGGG+CGG - chr7_1:55646567-55646586 Msa1025260:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 55645650 55648501 55645650 ID=Msa1025260;Name=Msa1025260
chr7_1 mRNA 55645650 55648501 55645650 ID=Msa1025260-mRNA-1;Parent=Msa1025260;Name=Msa1025260-mRNA-1;_AED=0.11;_eAED=0.12;_QI=148|0.5|0.66|1|1|1|3|0|162
chr7_1 exon 55645650 55645996 55645650 ID=Msa1025260-mRNA-1:exon:11132;Parent=Msa1025260-mRNA-1
chr7_1 exon 55646396 55646450 55646396 ID=Msa1025260-mRNA-1:exon:11131;Parent=Msa1025260-mRNA-1
chr7_1 exon 55648267 55648501 55648267 ID=Msa1025260-mRNA-1:exon:11130;Parent=Msa1025260-mRNA-1
chr7_1 five_prime_UTR 55648354 55648501 55648354 ID=Msa1025260-mRNA-1:five_prime_utr;Parent=Msa1025260-mRNA-1
chr7_1 CDS 55648267 55648353 55648267 ID=Msa1025260-mRNA-1:cds;Parent=Msa1025260-mRNA-1
chr7_1 CDS 55646396 55646450 55646396 ID=Msa1025260-mRNA-1:cds;Parent=Msa1025260-mRNA-1
chr7_1 CDS 55645650 55645996 55645650 ID=Msa1025260-mRNA-1:cds;Parent=Msa1025260-mRNA-1
Gene Sequence

>Msa1025260

ATGGATCAGGTATTGAACAAGGTTGGATCTTACTGGTTCAGCAAGAAAGCCAACAAGGAACTCAACTCTGTCGGTGATGATTTCAACTCACTGTCAAGCAGCATTGAAGGAGGAACCAAATGGCTCGTCAACAAATTAAAAGAGTTGCTGAAGGAGTATGATCTACCAATAGGAATCTTTCCCCGCGACGCAACAAACTATGAGTTCAATGAAGAAACAAGAAAGCTTGTTGTTTACATTCCTCAAGTGTGTGAAGTAGGCTACAGAGATTCATCAGTCTTGCGCTTCACAACTACTGTTTCTGGTTACTTGGAGAAAGGAAAGCTAGCTGATATAGAGGGAATGAAGACCAAAGTGTTGGTGTGGGTGAAAGTTACCGCCATTACATCCGAGGGACCAAAGCTGCACTTCACTGCTGGCATGAAGAAAACAAGGAAAAGGGAAGCATATGAAGTTTCTAGAGATGGTGTAATTATAGATAAATTCTAA

Protein sequence

>Msa1025260

MDQVLNKVGSYWFSKKANKELNSVGDDFNSLSSSIEGGTKWLVNKLKELLKEYDLPIGIFPRDATNYEFNEETRKLVVYIPQVCEVGYRDSSVLRFTTTVSGYLEKGKLADIEGMKTKVLVWVKVTAITSEGPKLHFTAGMKKTRKREAYEVSRDGVIIDKF*