Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138160 | sp|Q28G05|SYF2_XENTR | 35.714 | 252 | 155 | 5 | 59 | 308 | 3 | 249 | 2.53e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138160 | A0A072VRJ1 | 98.710 | 310 | 2 | 1 | 1 | 310 | 1 | 308 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0138160 | 0.822674 | 2.087234e-53 | -8.615850e-47 |
| Msa0007850 | Msa0138160 | 0.804498 | 2.098554e-49 | -8.615850e-47 |
| Msa0010820 | Msa0138160 | 0.959665 | 1.081771e-117 | -8.615850e-47 |
| Msa0029260 | Msa0138160 | 0.824244 | 8.965204e-54 | -8.615850e-47 |
| Msa0033880 | Msa0138160 | 0.810348 | 1.205108e-50 | -8.615850e-47 |
| Msa0036370 | Msa0138160 | 0.805886 | 1.074866e-49 | -8.615850e-47 |
| Msa0055100 | Msa0138160 | 0.821357 | 4.214323e-53 | -8.615850e-47 |
| Msa0055150 | Msa0138160 | 0.811977 | 5.344615e-51 | -8.615850e-47 |
| Msa0057140 | Msa0138160 | 0.805357 | 1.387946e-49 | -8.615850e-47 |
| Msa0061970 | Msa0138160 | 0.811835 | 5.740013e-51 | -8.615850e-47 |
| Msa0076780 | Msa0138160 | 0.818030 | 2.424342e-52 | -8.615850e-47 |
| Msa0077010 | Msa0138160 | 0.819573 | 1.082059e-52 | -8.615850e-47 |
| Msa0090030 | Msa0138160 | 0.817011 | 4.113788e-52 | -8.615850e-47 |
| Msa0092170 | Msa0138160 | 0.808189 | 3.499674e-50 | -8.615850e-47 |
| Msa0093960 | Msa0138160 | 0.805746 | 1.150080e-49 | -8.615850e-47 |
| Msa0094920 | Msa0138160 | 0.823695 | 1.206058e-53 | -8.615850e-47 |
| Msa0097600 | Msa0138160 | 0.803016 | 4.262806e-49 | -8.615850e-47 |
| Msa0100800 | Msa0138160 | 0.815098 | 1.100172e-51 | -8.615850e-47 |
| Msa0101180 | Msa0138160 | 0.820631 | 6.194899e-53 | -8.615850e-47 |
| Msa0113240 | Msa0138160 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0126770 | Msa0138160 | 0.807744 | 4.352555e-50 | -8.615850e-47 |
| Msa0126840 | Msa0138160 | 0.826836 | 2.179982e-54 | -8.615850e-47 |
| Msa0127040 | Msa0138160 | 0.855037 | 8.255532e-62 | -8.615850e-47 |
| Msa0127850 | Msa0138160 | 0.803695 | 3.083743e-49 | -8.615850e-47 |
| Msa0130520 | Msa0138160 | 0.802158 | 6.405837e-49 | -8.615850e-47 |
| Msa0138160 | Msa0145150 | 0.827437 | 1.565511e-54 | -8.615850e-47 |
| Msa0138160 | Msa0165440 | 0.809274 | 2.051687e-50 | -8.615850e-47 |
| Msa0138160 | Msa0166750 | 0.834092 | 3.660671e-56 | -8.615850e-47 |
| Msa0138160 | Msa0167480 | 0.806667 | 7.359428e-50 | -8.615850e-47 |
| Msa0138160 | Msa0169300 | 0.820525 | 6.551303e-53 | -8.615850e-47 |
| Msa0138160 | Msa0171940 | 0.807720 | 4.403812e-50 | -8.615850e-47 |
| Msa0138160 | Msa0174000 | 0.812682 | 3.748997e-51 | -8.615850e-47 |
| Msa0138160 | Msa0175200 | 0.817239 | 3.655945e-52 | -8.615850e-47 |
| Msa0138160 | Msa0177230 | 0.803206 | 3.893427e-49 | -8.615850e-47 |
| Msa0138160 | Msa0182280 | 0.839979 | 1.146055e-57 | -8.615850e-47 |
| Msa0138160 | Msa0183460 | 0.820613 | 6.252940e-53 | -8.615850e-47 |
| Msa0138160 | Msa0208000 | 0.827233 | 1.752307e-54 | -8.615850e-47 |
| Msa0138160 | Msa0221600 | 0.804378 | 2.223637e-49 | -8.615850e-47 |
| Msa0138160 | Msa0239490 | 0.818795 | 1.626979e-52 | -8.615850e-47 |
| Msa0138160 | Msa0251770 | 0.815022 | 1.143687e-51 | -8.615850e-47 |
| Msa0138160 | Msa0252240 | 0.840315 | 9.364349e-58 | -8.615850e-47 |
| Msa0138160 | Msa0260210 | 0.816764 | 4.673586e-52 | -8.615850e-47 |
| Msa0138160 | Msa0265160 | 0.801000 | 1.107026e-48 | -8.615850e-47 |
| Msa0138160 | Msa0266210 | 0.815227 | 1.029773e-51 | -8.615850e-47 |
| Msa0138160 | Msa0271360 | 0.817179 | 3.771030e-52 | -8.615850e-47 |
| Msa0138160 | Msa0280430 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0138160 | Msa0287670 | 0.815041 | 1.132480e-51 | -8.615850e-47 |
| Msa0138160 | Msa0291520 | 0.817153 | 3.821723e-52 | -8.615850e-47 |
| Msa0138160 | Msa0296920 | 0.808675 | 2.756937e-50 | -8.615850e-47 |
| Msa0138160 | Msa0299520 | 0.813929 | 1.995547e-51 | -8.615850e-47 |
| Msa0138160 | Msa0304290 | 0.821231 | 4.505865e-53 | -8.615850e-47 |
| Msa0138160 | Msa0304330 | 0.823073 | 1.685668e-53 | -8.615850e-47 |
| Msa0138160 | Msa0304660 | 0.803041 | 4.211993e-49 | -8.615850e-47 |
| Msa0138160 | Msa0305890 | 0.812587 | 3.934173e-51 | -8.615850e-47 |
| Msa0138160 | Msa0308200 | 0.808819 | 2.567248e-50 | -8.615850e-47 |
| Msa0138160 | Msa0308220 | 0.806816 | 6.846191e-50 | -8.615850e-47 |
| Msa0138160 | Msa0331700 | 0.801487 | 8.798531e-49 | -8.615850e-47 |
| Msa0138160 | Msa0340810 | 0.812194 | 4.793858e-51 | -8.615850e-47 |
| Msa0138160 | Msa0376690 | 0.829186 | 5.925683e-55 | -8.615850e-47 |
| Msa0138160 | Msa0380370 | 0.803914 | 2.776940e-49 | -8.615850e-47 |
| Msa0138160 | Msa0381000 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0138160 | Msa0381700 | 0.830094 | 3.563155e-55 | -8.615850e-47 |
| Msa0138160 | Msa0384880 | 0.849538 | 3.033072e-60 | -8.615850e-47 |
| Msa0138160 | Msa0385490 | 0.807070 | 6.048416e-50 | -8.615850e-47 |
| Msa0138160 | Msa0387910 | 0.818949 | 1.500527e-52 | -8.615850e-47 |
| Msa0138160 | Msa0392940 | 0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa0138160 | Msa0403190 | 0.805389 | 1.367017e-49 | -8.615850e-47 |
| Msa0138160 | Msa0419520 | 0.804594 | 2.004270e-49 | -8.615850e-47 |
| Msa0138160 | Msa0436200 | 0.824660 | 7.157633e-54 | -8.615850e-47 |
| Msa0138160 | Msa0465550 | 0.815092 | 1.103773e-51 | -8.615850e-47 |
| Msa0138160 | Msa0471590 | 0.804429 | 2.169507e-49 | -8.615850e-47 |
| Msa0138160 | Msa0474700 | 0.807769 | 4.299237e-50 | -8.615850e-47 |
| Msa0138160 | Msa0479330 | 0.841361 | 4.977829e-58 | -8.615850e-47 |
| Msa0138160 | Msa0511490 | 0.853994 | 1.653465e-61 | -8.615850e-47 |
| Msa0138160 | Msa0513440 | 0.823956 | 1.047779e-53 | -8.615850e-47 |
| Msa0138160 | Msa0523680 | 0.817780 | 2.761864e-52 | -8.615850e-47 |
| Msa0138160 | Msa0524590 | 0.809353 | 1.972850e-50 | -8.615850e-47 |
| Msa0138160 | Msa0527910 | 0.844307 | 8.197508e-59 | -8.615850e-47 |
| Msa0138160 | Msa0546570 | 0.805254 | 1.458840e-49 | -8.615850e-47 |
| Msa0138160 | Msa0550540 | 0.831090 | 2.032229e-55 | -8.615850e-47 |
| Msa0138160 | Msa0550570 | 0.842302 | 2.810005e-58 | -8.615850e-47 |
| Msa0138160 | Msa0578090 | 0.804235 | 2.381235e-49 | -8.615850e-47 |
| Msa0138160 | Msa0579370 | 0.839884 | 1.212925e-57 | -8.615850e-47 |
| Msa0138160 | Msa0590650 | 0.803305 | 3.714332e-49 | -8.615850e-47 |
| Msa0138160 | Msa0600610 | 0.808345 | 3.241506e-50 | -8.615850e-47 |
| Msa0138160 | Msa0602370 | 0.839520 | 1.508689e-57 | -8.615850e-47 |
| Msa0138160 | Msa0603670 | 0.816623 | 5.026529e-52 | -8.615850e-47 |
| Msa0138160 | Msa0607510 | 0.823990 | 1.028710e-53 | -8.615850e-47 |
| Msa0138160 | Msa0609000 | 0.815075 | 1.113050e-51 | -8.615850e-47 |
| Msa0138160 | Msa0610390 | 0.807760 | 4.317773e-50 | -8.615850e-47 |
| Msa0138160 | Msa0614990 | 0.853748 | 1.946021e-61 | -8.615850e-47 |
| Msa0138160 | Msa0618930 | 0.802803 | 4.717915e-49 | -8.615850e-47 |
| Msa0138160 | Msa0619920 | 0.803962 | 2.714061e-49 | -8.615850e-47 |
| Msa0138160 | Msa0626680 | 0.806525 | 7.886369e-50 | -8.615850e-47 |
| Msa0138160 | Msa0626940 | 0.834019 | 3.818171e-56 | -8.615850e-47 |
| Msa0138160 | Msa0628290 | 0.804674 | 1.929060e-49 | -8.615850e-47 |
| Msa0138160 | Msa0643320 | 0.821643 | 3.619918e-53 | -8.615850e-47 |
| Msa0138160 | Msa0649410 | 0.814007 | 1.917975e-51 | -8.615850e-47 |
| Msa0138160 | Msa0654620 | 0.813464 | 2.525659e-51 | -8.615850e-47 |
| Msa0138160 | Msa0659990 | 0.806117 | 9.613358e-50 | -8.615850e-47 |
| Msa0138160 | Msa0664760 | 0.801801 | 7.586230e-49 | -8.615850e-47 |
| Msa0138160 | Msa0669720 | 0.849406 | 3.300890e-60 | -8.615850e-47 |
| Msa0138160 | Msa0669760 | 0.838427 | 2.895188e-57 | -8.615850e-47 |
| Msa0138160 | Msa0677770 | 0.806074 | 9.811999e-50 | -8.615850e-47 |
| Msa0138160 | Msa0683140 | 0.833648 | 4.725567e-56 | -8.615850e-47 |
| Msa0138160 | Msa0683600 | 0.820409 | 6.964924e-53 | -8.615850e-47 |
| Msa0138160 | Msa0694840 | 0.811314 | 7.446928e-51 | -8.615850e-47 |
| Msa0138160 | Msa0706390 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0138160 | Msa0707390 | 0.808495 | 3.012222e-50 | -8.615850e-47 |
| Msa0138160 | Msa0711490 | 0.805886 | 1.074866e-49 | -8.615850e-47 |
| Msa0138160 | Msa0719420 | 0.810020 | 1.418176e-50 | -8.615850e-47 |
| Msa0138160 | Msa0726860 | 0.807373 | 5.216658e-50 | -8.615850e-47 |
| Msa0138160 | Msa0735310 | 0.808819 | 2.567296e-50 | -8.615850e-47 |
| Msa0138160 | Msa0743990 | 0.800008 | 1.762593e-48 | -8.615850e-47 |
| Msa0138160 | Msa0765180 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0138160 | Msa0772480 | 0.808977 | 2.375165e-50 | -8.615850e-47 |
| Msa0138160 | Msa0780880 | 0.811177 | 7.974473e-51 | -8.615850e-47 |
| Msa0138160 | Msa0781270 | 0.806143 | 9.491993e-50 | -8.615850e-47 |
| Msa0138160 | Msa0789680 | 0.808422 | 3.121192e-50 | -8.615850e-47 |
| Msa0138160 | Msa0793390 | 0.832465 | 9.309050e-56 | -8.615850e-47 |
| Msa0138160 | Msa0798440 | 0.808729 | 2.684005e-50 | -8.615850e-47 |
| Msa0138160 | Msa0805500 | 0.827688 | 1.362820e-54 | -8.615850e-47 |
| Msa0138160 | Msa0814250 | 0.808983 | 2.368584e-50 | -8.615850e-47 |
| Msa0138160 | Msa0823500 | 0.824612 | 7.345872e-54 | -8.615850e-47 |
| Msa0138160 | Msa0839200 | 0.821012 | 5.061513e-53 | -8.615850e-47 |
| Msa0138160 | Msa0862500 | 0.826344 | 2.857005e-54 | -8.615850e-47 |
| Msa0138160 | Msa0869010 | 0.802519 | 5.397551e-49 | -8.615850e-47 |
| Msa0138160 | Msa0895310 | 0.800381 | 1.480175e-48 | -8.615850e-47 |
| Msa0138160 | Msa0901450 | 0.836038 | 1.182690e-56 | -8.615850e-47 |
| Msa0138160 | Msa0913240 | 0.810165 | 1.320332e-50 | -8.615850e-47 |
| Msa0138160 | Msa0921870 | 0.821206 | 4.567234e-53 | -8.615850e-47 |
| Msa0138160 | Msa0924150 | -0.801772 | 7.691853e-49 | -8.615850e-47 |
| Msa0138160 | Msa0925770 | 0.809235 | 2.092001e-50 | -8.615850e-47 |
| Msa0138160 | Msa0930140 | 0.810787 | 9.690053e-51 | -8.615850e-47 |
| Msa0138160 | Msa0933290 | 0.837972 | 3.791255e-57 | -8.615850e-47 |
| Msa0138160 | Msa0937330 | 0.858619 | 7.276678e-63 | -8.615850e-47 |
| Msa0138160 | Msa0945100 | 0.803718 | 3.049226e-49 | -8.615850e-47 |
| Msa0138160 | Msa0959910 | 0.817707 | 2.867206e-52 | -8.615850e-47 |
| Msa0138160 | Msa0960830 | 0.801890 | 7.273131e-49 | -8.615850e-47 |
| Msa0138160 | Msa0981430 | 0.806069 | 9.838914e-50 | -8.615850e-47 |
| Msa0138160 | Msa0993240 | 0.826716 | 2.328914e-54 | -8.615850e-47 |
| Msa0138160 | Msa1001350 | 0.828516 | 8.606748e-55 | -8.615850e-47 |
| Msa0138160 | Msa1025940 | 0.814372 | 1.593322e-51 | -8.615850e-47 |
| Msa0138160 | Msa1036740 | 0.822216 | 2.666817e-53 | -8.615850e-47 |
| Msa0138160 | Msa1073400 | 0.816123 | 6.503580e-52 | -8.615850e-47 |
| Msa0138160 | Msa1083880 | 0.826787 | 2.239356e-54 | -8.615850e-47 |
| Msa0138160 | Msa1089840 | 0.807396 | 5.158623e-50 | -8.615850e-47 |
| Msa0138160 | Msa1093330 | 0.827600 | 1.430407e-54 | -8.615850e-47 |
| Msa0138160 | Msa1113880 | 0.812381 | 4.362347e-51 | -8.615850e-47 |
| Msa0138160 | Msa1122820 | 0.821526 | 3.852695e-53 | -8.615850e-47 |
| Msa0138160 | Msa1126850 | 0.813827 | 2.101999e-51 | -8.615850e-47 |
| Msa0138160 | Msa1144970 | 0.833981 | 3.902246e-56 | -8.615850e-47 |
| Msa0138160 | Msa1152520 | 0.805042 | 1.615946e-49 | -8.615850e-47 |
| Msa0138160 | Msa1163870 | 0.815700 | 8.083025e-52 | -8.615850e-47 |
| Msa0138160 | Msa1164020 | 0.803944 | 2.737062e-49 | -8.615850e-47 |
| Msa0138160 | Msa1165960 | 0.802067 | 6.689715e-49 | -8.615850e-47 |
| Msa0138160 | Msa1166870 | 0.811603 | 6.447336e-51 | -8.615850e-47 |
| Msa0138160 | Msa1176360 | 0.838078 | 3.561305e-57 | -8.615850e-47 |
| Msa0138160 | Msa1176980 | 0.814646 | 1.385898e-51 | -8.615850e-47 |
| Msa0138160 | Msa1179950 | 0.815647 | 8.304286e-52 | -8.615850e-47 |
| Msa0138160 | Msa1179980 | 0.833791 | 4.353361e-56 | -8.615850e-47 |
| Msa0138160 | Msa1201830 | 0.802228 | 6.196990e-49 | -8.615850e-47 |
| Msa0138160 | Msa1202580 | 0.812981 | 3.225025e-51 | -8.615850e-47 |
| Msa0138160 | Msa1226610 | 0.814126 | 1.806029e-51 | -8.615850e-47 |
| Msa0138160 | Msa1253810 | 0.833833 | 4.249727e-56 | -8.615850e-47 |
| Msa0138160 | Msa1269300 | 0.802292 | 6.013136e-49 | -8.615850e-47 |
| Msa0138160 | Msa1270620 | 0.828816 | 7.285208e-55 | -8.615850e-47 |
| Msa0138160 | Msa1270690 | 0.832000 | 1.213354e-55 | -8.615850e-47 |
| Msa0138160 | Msa1278900 | 0.809796 | 1.585399e-50 | -8.615850e-47 |
| Msa0138160 | Msa1285880 | 0.803308 | 3.708238e-49 | -8.615850e-47 |
| Msa0138160 | Msa1294960 | 0.800396 | 1.469549e-48 | -8.615850e-47 |
| Msa0138160 | Msa1299700 | 0.821367 | 4.191822e-53 | -8.615850e-47 |
| Msa0138160 | Msa1306990 | 0.823939 | 1.057085e-53 | -8.615850e-47 |
| Msa0138160 | Msa1317270 | 0.814492 | 1.499163e-51 | -8.615850e-47 |
| Msa0138160 | Msa1332220 | 0.817646 | 2.960193e-52 | -8.615850e-47 |
| Msa0138160 | Msa1338610 | 0.816275 | 6.012981e-52 | -8.615850e-47 |
| Msa0138160 | Msa1340830 | 0.819257 | 1.277379e-52 | -8.615850e-47 |
| Msa0138160 | Msa1350690 | 0.814486 | 1.503555e-51 | -8.615850e-47 |
| Msa0138160 | Msa1355700 | 0.825142 | 5.506953e-54 | -8.615850e-47 |
| Msa0138160 | Msa1362090 | 0.801421 | 9.074634e-49 | -8.615850e-47 |
| Msa0138160 | Msa1363700 | 0.813894 | 2.031588e-51 | -8.615850e-47 |
| Msa0138160 | Msa1365860 | 0.818226 | 2.188843e-52 | -8.615850e-47 |
| Msa0138160 | Msa1371090 | 0.804676 | 1.926961e-49 | -8.615850e-47 |
| Msa0138160 | Msa1373800 | 0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0138160 | Msa1376580 | 0.800433 | 1.444760e-48 | -8.615850e-47 |
| Msa0138160 | Msa1383350 | 0.841526 | 4.503920e-58 | -8.615850e-47 |
| Msa0138160 | Msa1426920 | 0.846749 | 1.785881e-59 | -8.615850e-47 |
| Msa0138160 | Msa1433600 | 0.815265 | 1.009885e-51 | -8.615850e-47 |
| Msa0138160 | Msa1450870 | 0.800172 | 1.632541e-48 | -8.615850e-47 |
| Msa0138160 | Msa1452470 | 0.808534 | 2.954969e-50 | -8.615850e-47 |
| Msa0138160 | Msa1461280 | 0.819010 | 1.453954e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138160 | MtrunA17_Chr1g0211051 | 98.710 | 310 | 2 | 1 | 1 | 310 | 1 | 308 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138160 | AT2G16860.2 | 66.774 | 310 | 91 | 3 | 1 | 310 | 1 | 298 | 4.97e-144 | 408 |
| Msa0138160 | AT2G16860.1 | 66.774 | 310 | 91 | 3 | 1 | 310 | 1 | 298 | 4.97e-144 | 408 |
Find 96 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCTGGCAGAGAGTTT+GGG | 0.193796 | 1_3:+70940390 | None:intergenic |
| TTAATATTTGACAATTTAAA+AGG | 0.201018 | 1_3:-70941254 | Msa0138160:five_prime_UTR |
| TTTCTGTCTGGCAGAGAGTT+TGG | 0.214726 | 1_3:+70940389 | None:intergenic |
| ATATTACCTAAAACCTGTTT+AGG | 0.228515 | 1_3:-70941209 | Msa0138160:five_prime_UTR |
| CTAATGCTGGGAAGTTTAAA+TGG | 0.249290 | 1_3:-70938020 | Msa0138160:three_prime_UTR |
| CTAACCAGATTGAGTGAGTT+TGG | 0.276157 | 1_3:+70940846 | None:intergenic |
| TACATCGACCTCAATGTTCT+TGG | 0.295867 | 1_3:+70938469 | None:intergenic |
| TTCTCTGGAGCAGGCTGATC+AGG | 0.298134 | 1_3:+70940432 | None:intergenic |
| TATTACCTAAAACCTGTTTA+GGG | 0.310993 | 1_3:-70941208 | Msa0138160:five_prime_UTR |
| GAAGCATCACGGTAGAATTC+TGG | 0.315653 | 1_3:+70938416 | None:intergenic |
| TTTGACAATTTAAAAGGATT+AGG | 0.321269 | 1_3:-70941248 | Msa0138160:five_prime_UTR |
| CAGAAGAGAAATACAAGAAA+TGG | 0.332825 | 1_3:-70940065 | Msa0138160:CDS |
| GATGGAGTTGAGAGCTAAAA+TGG | 0.334885 | 1_3:-70940361 | Msa0138160:intron |
| AAGATATTTAATCCCTAAAC+AGG | 0.340130 | 1_3:+70941196 | None:intergenic |
| GATTCAAGTCATTTGCATCT+AGG | 0.359899 | 1_3:+70937808 | None:intergenic |
| GACAGTATACCTTTCCATAC+TGG | 0.367957 | 1_3:+70938387 | None:intergenic |
| CGAGCGAGGAACTGCATTGC+CGG | 0.368519 | 1_3:-70938089 | Msa0138160:CDS |
| GGAAAACTTCTTGATGCAAA+TGG | 0.374108 | 1_3:-70940132 | Msa0138160:CDS |
| TCTCATTGTTATTCTAATGC+TGG | 0.378311 | 1_3:-70938033 | Msa0138160:three_prime_UTR |
| TCATCAGGAGACAACTCATC+TGG | 0.396965 | 1_3:+70940504 | None:intergenic |
| ATTACTGGCGTTCCGGCAAT+CGG | 0.404996 | 1_3:+70940915 | None:intergenic |
| AAGAAGATTGAACGGGCCTT+TGG | 0.407954 | 1_3:-70938142 | Msa0138160:CDS |
| TCCTCATTGTTCTCTGGAGC+AGG | 0.408226 | 1_3:+70940423 | None:intergenic |
| AGCACCGATTTCTCAGAATT+CGG | 0.412374 | 1_3:+70941106 | None:intergenic |
| TCTTGTTGAAATGCTCATTA+CGG | 0.414024 | 1_3:+70938161 | None:intergenic |
| AAATGGTGGATTGCGTTCTC+TGG | 0.417439 | 1_3:-70938003 | Msa0138160:three_prime_UTR |
| GAAAAGGATTACTGGCGTTC+CGG | 0.418188 | 1_3:+70940908 | None:intergenic |
| AGGATCCTGCTCCATTCGGC+TGG | 0.431794 | 1_3:-70940038 | Msa0138160:CDS |
| GAGATGTGCATCCCGATTGC+CGG | 0.431903 | 1_3:-70940927 | Msa0138160:CDS |
| CTCATTGTTATTCTAATGCT+GGG | 0.435726 | 1_3:-70938032 | Msa0138160:three_prime_UTR |
| CAAGCCAAACTCACTCAATC+TGG | 0.442251 | 1_3:-70940850 | Msa0138160:intron |
| CAGGATGGTACAAGAACTTA+AGG | 0.443877 | 1_3:-70938260 | Msa0138160:CDS |
| AAAACGTAATCAAATTGAAA+TGG | 0.446058 | 1_3:-70940241 | Msa0138160:CDS |
| GATGCTTCAAGTCTCCAGTA+TGG | 0.454556 | 1_3:-70938401 | Msa0138160:CDS |
| TCATCATGCATCCCCTCATC+AGG | 0.456108 | 1_3:+70940489 | None:intergenic |
| GAGCCATCCTCATTGTTCTC+TGG | 0.465692 | 1_3:+70940417 | None:intergenic |
| ACATTCGTGAAAAGGATTAC+TGG | 0.473926 | 1_3:+70940900 | None:intergenic |
| TAATCAGTACATTCGTGAAA+AGG | 0.476136 | 1_3:+70940892 | None:intergenic |
| AGAAGAGAAATACAAGAAAT+GGG | 0.476799 | 1_3:-70940064 | Msa0138160:CDS |
| AATTCCGAATTCTGAGAAAT+CGG | 0.481761 | 1_3:-70941110 | Msa0138160:five_prime_UTR |
| GGAGGCTCCAACAGAGTCTA+GGG | 0.490980 | 1_3:-70940199 | Msa0138160:CDS |
| TCAGAATTCGGAATTCGATT+CGG | 0.493598 | 1_3:+70941118 | None:intergenic |
| TGGAGGCTCCAACAGAGTCT+AGG | 0.495220 | 1_3:-70940200 | Msa0138160:CDS |
| CCATCCCAGCCGAATGGAGC+AGG | 0.495866 | 1_3:+70940033 | None:intergenic |
| TTGAGTTTGAAGCATTTCCT+TGG | 0.508471 | 1_3:-70937833 | Msa0138160:three_prime_UTR |
| TTTCAACAAGAAGATTGAAC+GGG | 0.513427 | 1_3:-70938149 | Msa0138160:CDS |
| CCTGCTCCATTCGGCTGGGA+TGG | 0.514280 | 1_3:-70940033 | Msa0138160:intron |
| CCTCAGAGGATAAGATTGAC+AGG | 0.514772 | 1_3:-70938279 | Msa0138160:CDS |
| CGATTGAACGAACCTGGGTC+AGG | 0.524556 | 1_3:+70941067 | None:intergenic |
| ACTTCTTGATGCAAATGGAC+TGG | 0.525736 | 1_3:-70940127 | Msa0138160:CDS |
| GGCAATCGGGATGCACATCT+CGG | 0.536567 | 1_3:+70940929 | None:intergenic |
| TTACTGGCGTTCCGGCAATC+GGG | 0.540658 | 1_3:+70940916 | None:intergenic |
| TGGTACAAGAACTTAAGGAT+AGG | 0.540824 | 1_3:-70938255 | Msa0138160:CDS |
| GATGAGGGGATGCATGATGA+TGG | 0.547228 | 1_3:-70940486 | Msa0138160:CDS |
| GAGAAGGATCCTGCTCCATT+CGG | 0.549251 | 1_3:-70940042 | Msa0138160:CDS |
| GAAACACCCCTAGACTCTGT+TGG | 0.552933 | 1_3:+70940192 | None:intergenic |
| CATCTGGGATGGCTTGCTCA+TGG | 0.554106 | 1_3:+70940520 | None:intergenic |
| GATGAGTTGTCTCCTGATGA+GGG | 0.554331 | 1_3:-70940501 | Msa0138160:CDS |
| GAAATACAAGAAATGGGAGA+AGG | 0.559598 | 1_3:-70940058 | Msa0138160:CDS |
| GGCTAATGAAAAGAAGAGGA+TGG | 0.564931 | 1_3:-70940220 | Msa0138160:CDS |
| AGAAACGTAGGGCATTTAGC+AGG | 0.569318 | 1_3:-70938228 | Msa0138160:CDS |
| AGATGAGTTGTCTCCTGATG+AGG | 0.572851 | 1_3:-70940502 | Msa0138160:CDS |
| GGTACAAGAACTTAAGGATA+GGG | 0.574451 | 1_3:-70938254 | Msa0138160:CDS |
| CCTGTCAATCTTATCCTCTG+AGG | 0.574499 | 1_3:+70938279 | None:intergenic |
| CATCAGGAGACAACTCATCT+GGG | 0.581072 | 1_3:+70940505 | None:intergenic |
| AACATACCATCCCAGCCGAA+TGG | 0.583714 | 1_3:+70940027 | None:intergenic |
| GGATCCTGCTCCATTCGGCT+GGG | 0.585839 | 1_3:-70940037 | Msa0138160:CDS |
| CTCCAATGTGTATTTACCAA+AGG | 0.590665 | 1_3:+70938126 | None:intergenic |
| AGAGGATAAGATTGACAGGA+TGG | 0.594250 | 1_3:-70938275 | Msa0138160:CDS |
| ACTGCAGAAGCAAATCAGTC+CGG | 0.596042 | 1_3:+70938070 | None:intergenic |
| AGGATAGGGACGAGAAACGT+AGG | 0.596930 | 1_3:-70938240 | Msa0138160:CDS |
| ATTTCAACAAGAAGATTGAA+CGG | 0.602140 | 1_3:-70938150 | Msa0138160:CDS |
| AGGAGACAACTCATCTGGGA+TGG | 0.602375 | 1_3:+70940509 | None:intergenic |
| GGCCTTTGGTAAATACACAT+TGG | 0.602906 | 1_3:-70938128 | Msa0138160:CDS |
| AGCAGAAGTGGCTTGACGAT+AGG | 0.605628 | 1_3:-70940167 | Msa0138160:CDS |
| ATGCTGGGAAGTTTAAATGG+TGG | 0.609597 | 1_3:-70938017 | Msa0138160:three_prime_UTR |
| AAATGGCTAATGAAAAGAAG+AGG | 0.612031 | 1_3:-70940224 | Msa0138160:CDS |
| GCTCCAGAGAACAATGAGGA+TGG | 0.616407 | 1_3:-70940420 | Msa0138160:CDS |
| TCTGTCTGGCAGAGAGTTTG+GGG | 0.622516 | 1_3:+70940391 | None:intergenic |
| TCAGAAGTTGCACAAGCTAG+CGG | 0.624203 | 1_3:-70940552 | Msa0138160:CDS |
| TTCAAGTCTCCAGTATGGAA+AGG | 0.627917 | 1_3:-70938396 | Msa0138160:intron |
| CAACTACACACACCTGACCC+AGG | 0.632411 | 1_3:-70941079 | Msa0138160:intron |
| GGACTGATTTGCTTCTGCAG+TGG | 0.634288 | 1_3:-70938068 | Msa0138160:exon |
| GGATAGGGACGAGAAACGTA+GGG | 0.635157 | 1_3:-70938239 | Msa0138160:CDS |
| GGGGTGTTTCGAAGCAGAAG+TGG | 0.643438 | 1_3:-70940179 | Msa0138160:CDS |
| ACTGGAGACTTGAAGCATCA+CGG | 0.643816 | 1_3:+70938405 | None:intergenic |
| TCATTTGCATCTAGGTACCA+AGG | 0.644622 | 1_3:+70937816 | None:intergenic |
| ATATATGCTTGACACACAAG+AGG | 0.658090 | 1_3:-70940091 | Msa0138160:CDS |
| AAAGCGAACCAAGAACATTG+AGG | 0.660498 | 1_3:-70938477 | Msa0138160:CDS |
| AAATGGACTGGATATGACAA+AGG | 0.684378 | 1_3:-70940115 | Msa0138160:CDS |
| AATCGAATTTGAAGACGCTG+AGG | 0.700545 | 1_3:-70941157 | Msa0138160:five_prime_UTR |
| TAATGAAAAGAAGAGGATGG+AGG | 0.705005 | 1_3:-70940217 | Msa0138160:CDS |
| ATGAGTTGTCTCCTGATGAG+GGG | 0.712862 | 1_3:-70940500 | Msa0138160:CDS |
| GAGGCTCCAACAGAGTCTAG+GGG | 0.720122 | 1_3:-70940198 | Msa0138160:CDS |
| GCCTGCTCCAGAGAACAATG+AGG | 0.734012 | 1_3:-70940424 | Msa0138160:CDS |
| TATGCACATATGGAGCATTG+TGG | 0.763355 | 1_3:-70937938 | Msa0138160:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATTTATTATTTAT+TGG | - | chr1_3:70938708-70938727 | Msa0138160:intron | 0.0% |
| !! | TTAATATTTGACAATTTAAA+AGG | - | chr1_3:70937764-70937783 | Msa0138160:three_prime_UTR | 10.0% |
| !! | TTATAATTTCAAAAATTCAA+AGG | + | chr1_3:70938016-70938035 | None:intergenic | 10.0% |
| !! | CAATATATTACAAAAAATTA+TGG | - | chr1_3:70938217-70938236 | Msa0138160:CDS | 10.0% |
| !!! | TATCTATTTTAAGATAAATT+GGG | + | chr1_3:70939333-70939352 | None:intergenic | 10.0% |
| !! | ATAATTCTATAAATAATCAT+GGG | + | chr1_3:70939818-70939837 | None:intergenic | 10.0% |
| !!! | TTAAATATATGTTTTTTTGT+TGG | - | chr1_3:70940003-70940022 | Msa0138160:intron | 10.0% |
| !! | AAAAAATTAAAATAAGATAC+AGG | + | chr1_3:70940078-70940097 | None:intergenic | 10.0% |
| !!! | TTTTTGTAATATATTGTATG+TGG | + | chr1_3:70938213-70938232 | None:intergenic | 15.0% |
| !!! | AGCAATAAAAATAACATTTT+TGG | + | chr1_3:70939031-70939050 | None:intergenic | 15.0% |
| !!! | AAAAATGTTATTTTTATTGC+TGG | - | chr1_3:70939030-70939049 | Msa0138160:intron | 15.0% |
| !! | TAGTGTCATATTAAAATTTA+GGG | - | chr1_3:70939239-70939258 | Msa0138160:intron | 15.0% |
| !!! | ATCTATTTTAAGATAAATTG+GGG | + | chr1_3:70939332-70939351 | None:intergenic | 15.0% |
| !!! | CTATCTATTTTAAGATAAAT+TGG | + | chr1_3:70939334-70939353 | None:intergenic | 15.0% |
| !! | TAATTCTATAAATAATCATG+GGG | + | chr1_3:70939817-70939836 | None:intergenic | 15.0% |
| !! | GATAATTCTATAAATAATCA+TGG | + | chr1_3:70939819-70939838 | None:intergenic | 15.0% |
| !!! | AATCATTTACTAACTTTTTA+CGG | - | chr1_3:70940110-70940129 | Msa0138160:CDS | 15.0% |
| !!! | TCTTTGGTTAATAAATTTTA+GGG | + | chr1_3:70940241-70940260 | None:intergenic | 15.0% |
| !!! | ATCTTTGGTTAATAAATTTT+AGG | + | chr1_3:70940242-70940261 | None:intergenic | 15.0% |
| !! | TTTGACAATTTAAAAGGATT+AGG | - | chr1_3:70937770-70937789 | Msa0138160:three_prime_UTR | 20.0% |
| !! | AAAACGTAATCAAATTGAAA+TGG | - | chr1_3:70938777-70938796 | Msa0138160:intron | 20.0% |
| !! | GTAGTGTCATATTAAAATTT+AGG | - | chr1_3:70939238-70939257 | Msa0138160:intron | 20.0% |
| !! | AGTGTCATATTAAAATTTAG+GGG | - | chr1_3:70939240-70939259 | Msa0138160:intron | 20.0% |
| !!! | TCTATTTTAAGATAAATTGG+GGG | + | chr1_3:70939331-70939350 | None:intergenic | 20.0% |
| !!! | AAAAATGCTTTTAGCTTTAA+CGG | + | chr1_3:70939390-70939409 | None:intergenic | 20.0% |
| !! | TAATTTACTCCAATAATTTG+TGG | - | chr1_3:70939760-70939779 | Msa0138160:intron | 20.0% |
| !!! | AATTTACTCCAATAATTTGT+GGG | - | chr1_3:70939761-70939780 | Msa0138160:intron | 20.0% |
| !! | AAAAATATCCCACAAATTAT+TGG | + | chr1_3:70939772-70939791 | None:intergenic | 20.0% |
| !!! | GAACAAATTGATTTATTCTT+GGG | + | chr1_3:70939890-70939909 | None:intergenic | 20.0% |
| !!! | AGAACAAATTGATTTATTCT+TGG | + | chr1_3:70939891-70939910 | None:intergenic | 20.0% |
| !! | ATATATTAACATAAACCTCA+GGG | - | chr1_3:70940198-70940217 | Msa0138160:CDS | 20.0% |
| !!! | TTTTACCAGTTTTTAATCAA+AGG | - | chr1_3:70940498-70940517 | Msa0138160:CDS | 20.0% |
| !! | CGATTCAAATAAAAATATAC+AGG | - | chr1_3:70941238-70941257 | Msa0138160:five_prime_UTR | 20.0% |
| !!! | AAACAGGTTTTAGGTAATAT+AGG | + | chr1_3:70937809-70937828 | None:intergenic | 25.0% |
| ! | ATATTACCTAAAACCTGTTT+AGG | - | chr1_3:70937809-70937828 | Msa0138160:three_prime_UTR | 25.0% |
| ! | TATTACCTAAAACCTGTTTA+GGG | - | chr1_3:70937810-70937829 | Msa0138160:three_prime_UTR | 25.0% |
| ! | AAGATATTTAATCCCTAAAC+AGG | + | chr1_3:70937825-70937844 | None:intergenic | 25.0% |
| ! | ATATAACGCAATACATAGAT+TGG | + | chr1_3:70937993-70938012 | None:intergenic | 25.0% |
| ! | ATGAATGGTAGAAAGAAATA+TGG | - | chr1_3:70938318-70938337 | Msa0138160:intron | 25.0% |
| ! | AGAAGAGAAATACAAGAAAT+GGG | - | chr1_3:70938954-70938973 | Msa0138160:intron | 25.0% |
| !! | TTTGTAGAGTTGATTGAAAA+TGG | - | chr1_3:70939625-70939644 | Msa0138160:intron | 25.0% |
| !!! | GTTTTCTAGAAATTGATTGA+GGG | + | chr1_3:70939664-70939683 | None:intergenic | 25.0% |
| !!! | TGTTTTCTAGAAATTGATTG+AGG | + | chr1_3:70939665-70939684 | None:intergenic | 25.0% |
| ! | ATGAACTTGAAACAAAAACA+AGG | - | chr1_3:70939698-70939717 | Msa0138160:intron | 25.0% |
| ! | TGAACTTGAAACAAAAACAA+GGG | - | chr1_3:70939699-70939718 | Msa0138160:intron | 25.0% |
| !! | TTTACCAGTATGTGTTTTAT+TGG | + | chr1_3:70939867-70939886 | None:intergenic | 25.0% |
| ! | TTGTTAAGTGAACAAATAGA+GGG | - | chr1_3:70940167-70940186 | Msa0138160:CDS | 25.0% |
| ! | GATATATTAACATAAACCTC+AGG | - | chr1_3:70940197-70940216 | Msa0138160:CDS | 25.0% |
| ! | TATATTAACATAAACCTCAG+GGG | - | chr1_3:70940199-70940218 | Msa0138160:CDS | 25.0% |
| ! | GTATAAGACATTGTAATCTT+TGG | + | chr1_3:70940257-70940276 | None:intergenic | 25.0% |
| ! | GATTACAATGTCTTATACTT+AGG | - | chr1_3:70940259-70940278 | Msa0138160:intron | 25.0% |
| ! | GAATAACACCATGAAATATT+CGG | - | chr1_3:70940360-70940379 | Msa0138160:intron | 25.0% |
| ! | AATGTCCTTTGATTAAAAAC+TGG | + | chr1_3:70940506-70940525 | None:intergenic | 25.0% |
| ! | AATTGTCTTTCCTTCATTAT+AGG | - | chr1_3:70940707-70940726 | Msa0138160:intron | 25.0% |
| ! | ATTTCAACAAGAAGATTGAA+CGG | - | chr1_3:70940868-70940887 | Msa0138160:CDS | 25.0% |
| !!! | TATATTTTGCTATGCACATA+TGG | - | chr1_3:70941070-70941089 | Msa0138160:intron | 25.0% |
| ! | TTAATCCCTAAACAGGTTTT+AGG | + | chr1_3:70937818-70937837 | None:intergenic | 30.0% |
| ! | AATTCCGAATTCTGAGAAAT+CGG | - | chr1_3:70937908-70937927 | Msa0138160:three_prime_UTR | 30.0% |
| TAATCAGTACATTCGTGAAA+AGG | + | chr1_3:70938129-70938148 | None:intergenic | 30.0% | |
| GTTATAGTAGATGCTATGAA+TGG | - | chr1_3:70938303-70938322 | Msa0138160:intron | 30.0% | |
| TTGATCCACTTATTGTGATA+AGG | - | chr1_3:70938367-70938386 | Msa0138160:intron | 30.0% | |
| ! | TCACTATCAGAATTTTCATC+AGG | + | chr1_3:70938565-70938584 | None:intergenic | 30.0% |
| AAATGGCTAATGAAAAGAAG+AGG | - | chr1_3:70938794-70938813 | Msa0138160:intron | 30.0% | |
| CAGAAGAGAAATACAAGAAA+TGG | - | chr1_3:70938953-70938972 | Msa0138160:intron | 30.0% | |
| TTGTATATCTCTGTGTATAC+AGG | + | chr1_3:70939080-70939099 | None:intergenic | 30.0% | |
| !! | TGTCATTTAAAAGTACCTCA+GGG | + | chr1_3:70939282-70939301 | None:intergenic | 30.0% |
| !!! | ATTTTAAGATAAATTGGGGG+AGG | + | chr1_3:70939328-70939347 | None:intergenic | 30.0% |
| TAAAACACAAATTGTCGTCA+TGG | + | chr1_3:70939418-70939437 | None:intergenic | 30.0% | |
| !!! | CAATTTGTGTTTTAGAGTGT+CGG | - | chr1_3:70939424-70939443 | Msa0138160:intron | 30.0% |
| CGTAAGATCATTTGATTCAA+TGG | - | chr1_3:70939461-70939480 | Msa0138160:intron | 30.0% | |
| ! | GTGAAGATGCAAATTGATTT+GGG | + | chr1_3:70939499-70939518 | None:intergenic | 30.0% |
| AGTGAAGATGCAAATTGATT+TGG | + | chr1_3:70939500-70939519 | None:intergenic | 30.0% | |
| GAAATATAAATTGTGATCCC+TGG | - | chr1_3:70939932-70939951 | Msa0138160:intron | 30.0% | |
| ATTATTAGCCCAACAAATCA+TGG | + | chr1_3:70939983-70940002 | None:intergenic | 30.0% | |
| GTTGTTAAGTGAACAAATAG+AGG | - | chr1_3:70940166-70940185 | Msa0138160:CDS | 30.0% | |
| TGTTAAGTGAACAAATAGAG+GGG | - | chr1_3:70940168-70940187 | Msa0138160:CDS | 30.0% | |
| !! | GTTGATGAAGAAGTGTTTAT+AGG | - | chr1_3:70940335-70940354 | Msa0138160:intron | 30.0% |
| TCTTGTTGAAATGCTCATTA+CGG | + | chr1_3:70940860-70940879 | None:intergenic | 30.0% | |
| TTTCAACAAGAAGATTGAAC+GGG | - | chr1_3:70940869-70940888 | Msa0138160:CDS | 30.0% | |
| ATTAAAAATAATCTCGAGCG+AGG | - | chr1_3:70940915-70940934 | Msa0138160:CDS | 30.0% | |
| ! | TCTCATTGTTATTCTAATGC+TGG | - | chr1_3:70940985-70941004 | Msa0138160:intron | 30.0% |
| ! | CTCATTGTTATTCTAATGCT+GGG | - | chr1_3:70940986-70941005 | Msa0138160:intron | 30.0% |
| TCAGAATTCGGAATTCGATT+CGG | + | chr1_3:70937903-70937922 | None:intergenic | 35.0% | |
| ACATTCGTGAAAAGGATTAC+TGG | + | chr1_3:70938121-70938140 | None:intergenic | 35.0% | |
| ! | TCAGAATTTTCATCAGGCTT+TGG | + | chr1_3:70938559-70938578 | None:intergenic | 35.0% |
| GCTAAAATGGTATTCAACGA+TGG | - | chr1_3:70938670-70938689 | Msa0138160:intron | 35.0% | |
| !!! | TTTTTTGCTTCTTGCTGACA+GGG | + | chr1_3:70938760-70938779 | None:intergenic | 35.0% |
| !!! | TTTTTTTGCTTCTTGCTGAC+AGG | + | chr1_3:70938761-70938780 | None:intergenic | 35.0% |
| TAATGAAAAGAAGAGGATGG+AGG | - | chr1_3:70938801-70938820 | Msa0138160:intron | 35.0% | |
| GACGATAGGAAGAAAAAGAT+TGG | - | chr1_3:70938865-70938884 | Msa0138160:intron | 35.0% | |
| GGAAAACTTCTTGATGCAAA+TGG | - | chr1_3:70938886-70938905 | Msa0138160:intron | 35.0% | |
| !! | AAATGGACTGGATATGACAA+AGG | - | chr1_3:70938903-70938922 | Msa0138160:intron | 35.0% |
| ATATATGCTTGACACACAAG+AGG | - | chr1_3:70938927-70938946 | Msa0138160:intron | 35.0% | |
| GAAATACAAGAAATGGGAGA+AGG | - | chr1_3:70938960-70938979 | Msa0138160:intron | 35.0% | |
| TTTGTGAACCACATTGAAGT+TGG | + | chr1_3:70939128-70939147 | None:intergenic | 35.0% | |
| ACTTGTAGAGTTTGTAAGCT+TGG | - | chr1_3:70939168-70939187 | Msa0138160:intron | 35.0% | |
| !! | GTCATTTAAAAGTACCTCAG+GGG | + | chr1_3:70939281-70939300 | None:intergenic | 35.0% |
| !! | GTGTCATTTAAAAGTACCTC+AGG | + | chr1_3:70939283-70939302 | None:intergenic | 35.0% |
| ! | ATCACGGTGTTAAGTTGTAA+GGG | + | chr1_3:70939363-70939382 | None:intergenic | 35.0% |
| ! | AATCACGGTGTTAAGTTGTA+AGG | + | chr1_3:70939364-70939383 | None:intergenic | 35.0% |
| !! | TAGCTTTAACGGAACAATCA+CGG | + | chr1_3:70939379-70939398 | None:intergenic | 35.0% |
| !! | ATTGATTTGGGACTAGAGTT+CGG | + | chr1_3:70939487-70939506 | None:intergenic | 35.0% |
| GGGTTTACAGTTTATCAGTA+AGG | - | chr1_3:70939719-70939738 | Msa0138160:intron | 35.0% | |
| CAAAGTTTCTCACAATTGGA+TGG | + | chr1_3:70939841-70939860 | None:intergenic | 35.0% | |
| CATCCAATTGTGAGAAACTT+TGG | - | chr1_3:70939839-70939858 | Msa0138160:intron | 35.0% | |
| GATCCAAAGTTTCTCACAAT+TGG | + | chr1_3:70939845-70939864 | None:intergenic | 35.0% | |
| GGATCCAATAAAACACATAC+TGG | - | chr1_3:70939860-70939879 | Msa0138160:intron | 35.0% | |
| TAGATGTGAGTTTAACAGCA+AGG | - | chr1_3:70940137-70940156 | Msa0138160:CDS | 35.0% | |
| GTATTCATGCAAACACATGT+AGG | + | chr1_3:70940292-70940311 | None:intergenic | 35.0% | |
| CATGTGTTTGCATGAATACT+TGG | - | chr1_3:70940293-70940312 | Msa0138160:intron | 35.0% | |
| GATCTAGACCGAATATTTCA+TGG | + | chr1_3:70940371-70940390 | None:intergenic | 35.0% | |
| ! | TGTGCCTTTAGAAGTTCTTA+CGG | - | chr1_3:70940451-70940470 | Msa0138160:CDS | 35.0% |
| AGTTCCGTAAGAACTTCTAA+AGG | + | chr1_3:70940458-70940477 | None:intergenic | 35.0% | |
| TTTGTACTTCTGCACATCAA+TGG | - | chr1_3:70940670-70940689 | Msa0138160:intron | 35.0% | |
| TTGTACTTCTGCACATCAAT+GGG | - | chr1_3:70940671-70940690 | Msa0138160:intron | 35.0% | |
| !! | CATCAATGGGTTATTGTATG+AGG | - | chr1_3:70940684-70940703 | Msa0138160:intron | 35.0% |
| !!! | GTTTTTGGTGCCTATAATGA+AGG | + | chr1_3:70940720-70940739 | None:intergenic | 35.0% |
| !!! | ATCTTATCCTCTGAGGTTTT+TGG | + | chr1_3:70940735-70940754 | None:intergenic | 35.0% |
| TGGTACAAGAACTTAAGGAT+AGG | - | chr1_3:70940763-70940782 | Msa0138160:intron | 35.0% | |
| GGTACAAGAACTTAAGGATA+GGG | - | chr1_3:70940764-70940783 | Msa0138160:intron | 35.0% | |
| CTCCAATGTGTATTTACCAA+AGG | + | chr1_3:70940895-70940914 | None:intergenic | 35.0% | |
| CTAATGCTGGGAAGTTTAAA+TGG | - | chr1_3:70940998-70941017 | Msa0138160:intron | 35.0% | |
| ! | TTGAGTTTGAAGCATTTCCT+TGG | - | chr1_3:70941185-70941204 | Msa0138160:five_prime_UTR | 35.0% |
| GATTCAAGTCATTTGCATCT+AGG | + | chr1_3:70941213-70941232 | None:intergenic | 35.0% | |
| AATCGAATTTGAAGACGCTG+AGG | - | chr1_3:70937861-70937880 | Msa0138160:three_prime_UTR | 40.0% | |
| !! | AGCACCGATTTCTCAGAATT+CGG | + | chr1_3:70937915-70937934 | None:intergenic | 40.0% |
| AGATACGATTGAACGAACCT+GGG | + | chr1_3:70937959-70937978 | None:intergenic | 40.0% | |
| AAGATACGATTGAACGAACC+TGG | + | chr1_3:70937960-70937979 | None:intergenic | 40.0% | |
| CTAACCAGATTGAGTGAGTT+TGG | + | chr1_3:70938175-70938194 | None:intergenic | 40.0% | |
| TTATGGCAACTAGACTTGAG+CGG | - | chr1_3:70938234-70938253 | Msa0138160:CDS | 40.0% | |
| ! | CCAAGCCTTATCACAATAAG+TGG | + | chr1_3:70938375-70938394 | None:intergenic | 40.0% |
| CCACTTATTGTGATAAGGCT+TGG | - | chr1_3:70938372-70938391 | Msa0138160:intron | 40.0% | |
| GATGGAGTTGAGAGCTAAAA+TGG | - | chr1_3:70938657-70938676 | Msa0138160:intron | 40.0% | |
| GGCTAATGAAAAGAAGAGGA+TGG | - | chr1_3:70938798-70938817 | Msa0138160:intron | 40.0% | |
| ACTTCTTGATGCAAATGGAC+TGG | - | chr1_3:70938891-70938910 | Msa0138160:intron | 40.0% | |
| TTTCTGTGCCAACTTCAATG+TGG | - | chr1_3:70939117-70939136 | Msa0138160:intron | 40.0% | |
| GTACTCGATATCACAAACTC+TGG | + | chr1_3:70939201-70939220 | None:intergenic | 40.0% | |
| ! | GGGAGGTTTAAAACTAGAAG+GGG | + | chr1_3:70939311-70939330 | None:intergenic | 40.0% |
| ! | GGGGAGGTTTAAAACTAGAA+GGG | + | chr1_3:70939312-70939331 | None:intergenic | 40.0% |
| ! | TCACGGTGTTAAGTTGTAAG+GGG | + | chr1_3:70939362-70939381 | None:intergenic | 40.0% |
| AAAGAAGAGCCACCAGAAAA+GGG | + | chr1_3:70939551-70939570 | None:intergenic | 40.0% | |
| AAAAGAAGAGCCACCAGAAA+AGG | + | chr1_3:70939552-70939571 | None:intergenic | 40.0% | |
| TAAGTGAACAAATAGAGGGG+AGG | - | chr1_3:70940171-70940190 | Msa0138160:CDS | 40.0% | |
| ATTAACATAAACCTCAGGGG+AGG | - | chr1_3:70940202-70940221 | Msa0138160:CDS | 40.0% | |
| AAAGCGAACCAAGAACATTG+AGG | - | chr1_3:70940541-70940560 | Msa0138160:CDS | 40.0% | |
| TACATCGACCTCAATGTTCT+TGG | + | chr1_3:70940552-70940571 | None:intergenic | 40.0% | |
| TTCAAGTCTCCAGTATGGAA+AGG | - | chr1_3:70940622-70940641 | Msa0138160:intron | 40.0% | |
| GACAGTATACCTTTCCATAC+TGG | + | chr1_3:70940634-70940653 | None:intergenic | 40.0% | |
| AGAGGATAAGATTGACAGGA+TGG | - | chr1_3:70940743-70940762 | Msa0138160:intron | 40.0% | |
| CAGGATGGTACAAGAACTTA+AGG | - | chr1_3:70940758-70940777 | Msa0138160:intron | 40.0% | |
| GGCCTTTGGTAAATACACAT+TGG | - | chr1_3:70940890-70940909 | Msa0138160:CDS | 40.0% | |
| ATGCTGGGAAGTTTAAATGG+TGG | - | chr1_3:70941001-70941020 | Msa0138160:intron | 40.0% | |
| !! | TATGCACATATGGAGCATTG+TGG | - | chr1_3:70941080-70941099 | Msa0138160:five_prime_UTR | 40.0% |
| TCATTTGCATCTAGGTACCA+AGG | + | chr1_3:70941205-70941224 | None:intergenic | 40.0% | |
| GAAAAGGATTACTGGCGTTC+CGG | + | chr1_3:70938113-70938132 | None:intergenic | 45.0% | |
| CAAGCCAAACTCACTCAATC+TGG | - | chr1_3:70938168-70938187 | Msa0138160:CDS | 45.0% | |
| TCAGAAGTTGCACAAGCTAG+CGG | - | chr1_3:70938466-70938485 | Msa0138160:CDS | 45.0% | |
| CATCAGGAGACAACTCATCT+GGG | + | chr1_3:70938516-70938535 | None:intergenic | 45.0% | |
| TCATCAGGAGACAACTCATC+TGG | + | chr1_3:70938517-70938536 | None:intergenic | 45.0% | |
| AGATGAGTTGTCTCCTGATG+AGG | - | chr1_3:70938516-70938535 | Msa0138160:intron | 45.0% | |
| GATGAGTTGTCTCCTGATGA+GGG | - | chr1_3:70938517-70938536 | Msa0138160:intron | 45.0% | |
| ATGAGTTGTCTCCTGATGAG+GGG | - | chr1_3:70938518-70938537 | Msa0138160:intron | 45.0% | |
| TTCTGTCTGGCAGAGAGTTT+GGG | + | chr1_3:70938631-70938650 | None:intergenic | 45.0% | |
| TTTCTGTCTGGCAGAGAGTT+TGG | + | chr1_3:70938632-70938651 | None:intergenic | 45.0% | |
| TCTCTGCCAGACAGAAAAAG+TGG | - | chr1_3:70938635-70938654 | Msa0138160:intron | 45.0% | |
| TGCCAGACAGAAAAAGTGGA+TGG | - | chr1_3:70938639-70938658 | Msa0138160:intron | 45.0% | |
| !!! | CTCCATCCACTTTTTCTGTC+TGG | + | chr1_3:70938644-70938663 | None:intergenic | 45.0% |
| !! | AATTACACTGACTTCCCCTG+AGG | - | chr1_3:70939264-70939283 | Msa0138160:intron | 45.0% |
| ! | GGGGGAGGTTTAAAACTAGA+AGG | + | chr1_3:70939313-70939332 | None:intergenic | 45.0% |
| !!! | TGTGTTTTAGAGTGTCGGTG+TGG | - | chr1_3:70939429-70939448 | Msa0138160:intron | 45.0% |
| !! | TTAGAGTGTCGGTGTGGATT+TGG | - | chr1_3:70939435-70939454 | Msa0138160:intron | 45.0% |
| AAGAAGAGCCACCAGAAAAG+GGG | + | chr1_3:70939550-70939569 | None:intergenic | 45.0% | |
| AAATCATGGACGCATGGAAG+AGG | + | chr1_3:70939969-70939988 | None:intergenic | 45.0% | |
| ! | TCCATGCGTCCATGATTTGT+TGG | - | chr1_3:70939971-70939990 | Msa0138160:intron | 45.0% |
| !! | CCATGCGTCCATGATTTGTT+GGG | - | chr1_3:70939972-70939991 | Msa0138160:intron | 45.0% |
| ATTTACACTAACCTCCCCTG+AGG | + | chr1_3:70940216-70940235 | None:intergenic | 45.0% | |
| ! | GAAGCATCACGGTAGAATTC+TGG | + | chr1_3:70940605-70940624 | None:intergenic | 45.0% |
| ! | ACTGGAGACTTGAAGCATCA+CGG | + | chr1_3:70940616-70940635 | None:intergenic | 45.0% |
| GATGCTTCAAGTCTCCAGTA+TGG | - | chr1_3:70940617-70940636 | Msa0138160:intron | 45.0% | |
| ATAGGCACCAAAAACCTCAG+AGG | - | chr1_3:70940725-70940744 | Msa0138160:intron | 45.0% | |
| CCTGTCAATCTTATCCTCTG+AGG | + | chr1_3:70940742-70940761 | None:intergenic | 45.0% | |
| CCTCAGAGGATAAGATTGAC+AGG | - | chr1_3:70940739-70940758 | Msa0138160:intron | 45.0% | |
| ! | AGAAACGTAGGGCATTTAGC+AGG | - | chr1_3:70940790-70940809 | Msa0138160:intron | 45.0% |
| AAGAAGATTGAACGGGCCTT+TGG | - | chr1_3:70940876-70940895 | Msa0138160:CDS | 45.0% | |
| ACTGCAGAAGCAAATCAGTC+CGG | + | chr1_3:70940951-70940970 | None:intergenic | 45.0% | |
| !! | AAATGGTGGATTGCGTTCTC+TGG | - | chr1_3:70941015-70941034 | Msa0138160:intron | 45.0% |
| !!! | AATTTTTGAAATTATAAATT+AGG | - | chr1_3:70938019-70938038 | Msa0138160:three_prime_UTR | 5.0% |
| !!! | ATTTTTGAAATTATAAATTA+GGG | - | chr1_3:70938020-70938039 | Msa0138160:three_prime_UTR | 5.0% |
| ATTACTGGCGTTCCGGCAAT+CGG | + | chr1_3:70938106-70938125 | None:intergenic | 50.0% | |
| GCAACTAGACTTGAGCGGTT+TGG | - | chr1_3:70938239-70938258 | Msa0138160:CDS | 50.0% | |
| AGGAGACAACTCATCTGGGA+TGG | + | chr1_3:70938512-70938531 | None:intergenic | 50.0% | |
| TCATCATGCATCCCCTCATC+AGG | + | chr1_3:70938532-70938551 | None:intergenic | 50.0% | |
| GATGAGGGGATGCATGATGA+TGG | - | chr1_3:70938532-70938551 | Msa0138160:intron | 50.0% | |
| !! | TCCTCATTGTTCTCTGGAGC+AGG | + | chr1_3:70938598-70938617 | None:intergenic | 50.0% |
| GCTCCAGAGAACAATGAGGA+TGG | - | chr1_3:70938598-70938617 | Msa0138160:intron | 50.0% | |
| GAGCCATCCTCATTGTTCTC+TGG | + | chr1_3:70938604-70938623 | None:intergenic | 50.0% | |
| TCTGTCTGGCAGAGAGTTTG+GGG | + | chr1_3:70938630-70938649 | None:intergenic | 50.0% | |
| GCTGACAGGGAAACAAAGCA+AGG | + | chr1_3:70938747-70938766 | None:intergenic | 50.0% | |
| GAAACACCCCTAGACTCTGT+TGG | + | chr1_3:70938829-70938848 | None:intergenic | 50.0% | |
| AGCAGAAGTGGCTTGACGAT+AGG | - | chr1_3:70938851-70938870 | Msa0138160:intron | 50.0% | |
| GAGAAGGATCCTGCTCCATT+CGG | - | chr1_3:70938976-70938995 | Msa0138160:intron | 50.0% | |
| AACATACCATCCCAGCCGAA+TGG | + | chr1_3:70938994-70939013 | None:intergenic | 50.0% | |
| TCACTCTCCCACTCTATCTC+TGG | - | chr1_3:70939515-70939534 | Msa0138160:intron | 50.0% | |
| !! | TGTGATCCCTGGACTTGTTG+TGG | - | chr1_3:70939943-70939962 | Msa0138160:intron | 50.0% |
| AAGAGGCCACAACAAGTCCA+GGG | + | chr1_3:70939952-70939971 | None:intergenic | 50.0% | |
| CCCAACAAATCATGGACGCA+TGG | + | chr1_3:70939975-70939994 | None:intergenic | 50.0% | |
| AGGATAGGGACGAGAAACGT+AGG | - | chr1_3:70940778-70940797 | Msa0138160:intron | 50.0% | |
| GGATAGGGACGAGAAACGTA+GGG | - | chr1_3:70940779-70940798 | Msa0138160:intron | 50.0% | |
| !! | GGACTGATTTGCTTCTGCAG+TGG | - | chr1_3:70940950-70940969 | Msa0138160:exon | 50.0% |
| CAACTACACACACCTGACCC+AGG | - | chr1_3:70937939-70937958 | Msa0138160:three_prime_UTR | 55.0% | |
| CGATTGAACGAACCTGGGTC+AGG | + | chr1_3:70937954-70937973 | None:intergenic | 55.0% | |
| GGCAATCGGGATGCACATCT+CGG | + | chr1_3:70938092-70938111 | None:intergenic | 55.0% | |
| GAGATGTGCATCCCGATTGC+CGG | - | chr1_3:70938091-70938110 | Msa0138160:CDS | 55.0% | |
| TTACTGGCGTTCCGGCAATC+GGG | + | chr1_3:70938105-70938124 | None:intergenic | 55.0% | |
| !! | CATCTGGGATGGCTTGCTCA+TGG | + | chr1_3:70938501-70938520 | None:intergenic | 55.0% |
| !! | TTCTCTGGAGCAGGCTGATC+AGG | + | chr1_3:70938589-70938608 | None:intergenic | 55.0% |
| GCCTGCTCCAGAGAACAATG+AGG | - | chr1_3:70938594-70938613 | Msa0138160:intron | 55.0% | |
| TGGAGGCTCCAACAGAGTCT+AGG | - | chr1_3:70938818-70938837 | Msa0138160:intron | 55.0% | |
| GGAGGCTCCAACAGAGTCTA+GGG | - | chr1_3:70938819-70938838 | Msa0138160:intron | 55.0% | |
| GAGGCTCCAACAGAGTCTAG+GGG | - | chr1_3:70938820-70938839 | Msa0138160:intron | 55.0% | |
| ! | GGGGTGTTTCGAAGCAGAAG+TGG | - | chr1_3:70938839-70938858 | Msa0138160:intron | 55.0% |
| GAAGAGGCCACAACAAGTCC+AGG | + | chr1_3:70939953-70939972 | None:intergenic | 55.0% | |
| AGGATCCTGCTCCATTCGGC+TGG | - | chr1_3:70938980-70938999 | Msa0138160:intron | 60.0% | |
| GGATCCTGCTCCATTCGGCT+GGG | - | chr1_3:70938981-70939000 | Msa0138160:intron | 60.0% | |
| TCCCACTCTATCTCTGGCGC+CGG | - | chr1_3:70939521-70939540 | Msa0138160:intron | 60.0% | |
| GCCACCAGAAAAGGGGTTGC+CGG | + | chr1_3:70939543-70939562 | None:intergenic | 60.0% | |
| CGAGCGAGGAACTGCATTGC+CGG | - | chr1_3:70940929-70940948 | Msa0138160:CDS | 60.0% | |
| CCATCCCAGCCGAATGGAGC+AGG | + | chr1_3:70938988-70939007 | None:intergenic | 65.0% | |
| CCTGCTCCATTCGGCTGGGA+TGG | - | chr1_3:70938985-70939004 | Msa0138160:intron | 65.0% | |
| GCCGGCGCCAGAGATAGAGT+GGG | + | chr1_3:70939525-70939544 | None:intergenic | 65.0% | |
| TGCCGGCGCCAGAGATAGAG+TGG | + | chr1_3:70939526-70939545 | None:intergenic | 65.0% | |
| ! | GCCGGCAACCCCTTTTCTGG+TGG | - | chr1_3:70939539-70939558 | Msa0138160:intron | 65.0% |
| !!! | GGCGCCGGCAACCCCTTTTC+TGG | - | chr1_3:70939536-70939555 | Msa0138160:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 70937747 | 70941293 | 70937747 | ID=Msa0138160;Name=Msa0138160 |
| chr1_3 | mRNA | 70937747 | 70941293 | 70937747 | ID=Msa0138160-mRNA-1;Parent=Msa0138160;Name=Msa0138160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=224|1|1|1|0.8|0.66|6|337|310 |
| chr1_3 | exon | 70937747 | 70938311 | 70937747 | ID=Msa0138160-mRNA-1:exon:24657;Parent=Msa0138160-mRNA-1 |
| chr1_3 | exon | 70938397 | 70938533 | 70938397 | ID=Msa0138160-mRNA-1:exon:24656;Parent=Msa0138160-mRNA-1 |
| chr1_3 | exon | 70940034 | 70940274 | 70940034 | ID=Msa0138160-mRNA-1:exon:24655;Parent=Msa0138160-mRNA-1 |
| chr1_3 | exon | 70940362 | 70940576 | 70940362 | ID=Msa0138160-mRNA-1:exon:24654;Parent=Msa0138160-mRNA-1 |
| chr1_3 | exon | 70940851 | 70940972 | 70940851 | ID=Msa0138160-mRNA-1:exon:24653;Parent=Msa0138160-mRNA-1 |
| chr1_3 | exon | 70941080 | 70941293 | 70941080 | ID=Msa0138160-mRNA-1:exon:24652;Parent=Msa0138160-mRNA-1 |
| chr1_3 | five_prime_UTR | 70941080 | 70941293 | 70941080 | ID=Msa0138160-mRNA-1:five_prime_utr;Parent=Msa0138160-mRNA-1 |
| chr1_3 | five_prime_UTR | 70940963 | 70940972 | 70940963 | ID=Msa0138160-mRNA-1:five_prime_utr;Parent=Msa0138160-mRNA-1 |
| chr1_3 | CDS | 70940851 | 70940962 | 70940851 | ID=Msa0138160-mRNA-1:cds;Parent=Msa0138160-mRNA-1 |
| chr1_3 | CDS | 70940362 | 70940576 | 70940362 | ID=Msa0138160-mRNA-1:cds;Parent=Msa0138160-mRNA-1 |
| chr1_3 | CDS | 70940034 | 70940274 | 70940034 | ID=Msa0138160-mRNA-1:cds;Parent=Msa0138160-mRNA-1 |
| chr1_3 | CDS | 70938397 | 70938533 | 70938397 | ID=Msa0138160-mRNA-1:cds;Parent=Msa0138160-mRNA-1 |
| chr1_3 | CDS | 70938084 | 70938311 | 70938084 | ID=Msa0138160-mRNA-1:cds;Parent=Msa0138160-mRNA-1 |
| chr1_3 | three_prime_UTR | 70937747 | 70938083 | 70937747 | ID=Msa0138160-mRNA-1:three_prime_utr;Parent=Msa0138160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
