AlfalfaGEDB | Msa0723110

M. sativa cultivar zhongmu-4 / Msa0723110

KEGG: -
GO: -
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0723110	AFK42019.1	91.057	123	11	0	1	123	1	123	1.14e-71	223

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0723110	sp\|Q945L4\|WTR40_ARATH	43.363	113	64	0	8	120	13	125	3.21e-23	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0723110	I3SP27	91.057	123	11	0	1	123	1	123	5.44e-72	223

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa0723110	0.816782	4.629499e-52	-8.615850e-47
Msa0012040	Msa0723110	0.800368	1.489226e-48	-8.615850e-47
Msa0029850	Msa0723110	0.805240	1.468619e-49	-8.615850e-47
Msa0036140	Msa0723110	0.800557	1.362781e-48	-8.615850e-47
Msa0039330	Msa0723110	0.813040	3.130687e-51	-8.615850e-47
Msa0051930	Msa0723110	0.802805	4.711973e-49	-8.615850e-47
Msa0052030	Msa0723110	0.827091	1.894164e-54	-8.615850e-47
Msa0065950	Msa0723110	0.808072	3.706314e-50	-8.615850e-47
Msa0092990	Msa0723110	0.800169	1.634496e-48	-8.615850e-47
Msa0102120	Msa0723110	0.811771	5.924783e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0723110	MtrunA17_Chr5g0413951	93.333	120	8	0	1	120	1	120	2.51e-74	224
Msa0723110	MtrunA17_Chr5g0413941	83.333	120	20	0	1	120	1	120	5.50e-67	206
Msa0723110	MtrunA17_Chr5g0413931	75.424	118	27	1	3	120	4	119	8.52e-58	182
Msa0723110	MtrunA17_Chr5g0413921	67.241	116	38	0	5	120	5	120	1.36e-50	164
Msa0723110	MtrunA17_Chr7g0227921	45.872	109	59	0	12	120	16	124	1.16e-23	93.6
Msa0723110	MtrunA17_Chr6g0451181	43.119	109	62	0	12	120	17	125	3.51e-23	87.8
Msa0723110	MtrunA17_Chr6g0451261	41.441	111	65	0	10	120	14	124	2.39e-22	91.3
Msa0723110	MtrunA17_Chr6g0451251	52.041	98	46	1	24	120	29	126	7.03e-22	89.0
Msa0723110	MtrunA17_Chr6g0451211	41.441	111	63	1	12	120	17	127	7.56e-21	86.3
Msa0723110	MtrunA17_Chr6g0451171	42.708	96	55	0	25	120	30	125	7.93e-21	85.9

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0723110	AT5G40210.1	43.363	113	64	8	120	13	125	3.26e-24	95.1
Msa0723110	AT5G40230.1	42.342	111	64	10	120	23	133	5.26e-20	84.3
Msa0723110	AT3G28050.1	45.045	111	61	10	120	14	124	6.24e-20	84.0
Msa0723110	AT5G40240.1	40.367	109	65	12	120	24	132	4.81e-19	81.6
Msa0723110	AT5G40240.3	40.367	109	65	12	120	24	132	4.81e-19	81.6
Msa0723110	AT5G40240.2	40.367	109	65	12	120	38	146	5.12e-19	81.6
Msa0723110	AT3G28100.3	46.847	111	59	10	120	16	126	2.62e-17	75.9
Msa0723110	AT3G28100.2	46.847	111	59	10	120	16	126	3.43e-17	75.1
Msa0723110	AT3G28100.1	46.847	111	59	10	120	16	126	5.17e-17	75.9
Msa0723110	AT4G15540.1	42.342	111	64	10	120	19	129	1.08e-16	75.1

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Find 23 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGATGTTGAAATTGG+AGG	0.500522	5_1:-20729736	None:intergenic
AAATATCAAAATTGTTAGGT+TGG	0.433167	5_1:-20729409	None:intergenic
AACAATAGCTGAAGCCAACA+TGG	0.534674	5_1:-20729925	None:intergenic
ACAATAGCTGAAGCCAACAT+GGG	0.645656	5_1:-20729924	None:intergenic
ACTCATATGTTAATGACTTC+TGG	0.288657	5_1:+20729885	Msa0723110:CDS
ATAGCAAGTATGAAGGTAAA+AGG	0.300566	5_1:-20729960	None:intergenic
ATGAAAGCAGCCACAAAAGA+TGG	0.452927	5_1:+20729619	Msa0723110:CDS
ATTGATGTTGAAATTGGAGG+AGG	0.546987	5_1:-20729733	None:intergenic
CAAGTATGAAGGTAAAAGGA+GGG	0.622141	5_1:-20729956	None:intergenic
CAGAAAATTGATGTTGAAAT+TGG	0.226936	5_1:-20729739	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCAGAATTAACAAGCAAAT+TGG	+	chr5_1:20729494-20729513	Msa0723110:five_prime_UTR	30.0%
TTTGGCAAAATAGAGTGATA+TGG	+	chr5_1:20729841-20729860	Msa0723110:intron	30.0%
ACTCATATGTTAATGACTTC+TGG	+	chr5_1:20729885-20729904	Msa0723110:CDS	30.0%
ATAGCAAGTATGAAGGTAAA+AGG	-	chr5_1:20729963-20729982	None:intergenic	30.0%
TCGGACTAAAGTTAAAGTTG+AGG	+	chr5_1:20729439-20729458	Msa0723110:five_prime_UTR	35.0%
CAGACAGAGACAAGAAAAAA+TGG	+	chr5_1:20729525-20729544	Msa0723110:exon	35.0%
GAAGAAAACATAGAGCCAAA+AGG	-	chr5_1:20729678-20729697	None:intergenic	35.0%
ATTGATGTTGAAATTGGAGG+AGG	-	chr5_1:20729736-20729755	None:intergenic	35.0%
TTCTGCAGATTACTTCTTCT+TGG	+	chr5_1:20729757-20729776	Msa0723110:CDS	35.0%
TACTATGTTGTTCATACCTG+AGG	-	chr5_1:20729786-20729805	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	20729408	20730025	20729408	ID=Msa0723110;Name=Msa0723110
chr5_1	mRNA	20729408	20730025	20729408	ID=Msa0723110-mRNA-1;Parent=Msa0723110;Name=Msa0723110-mRNA-1;_AED=0.40;_eAED=0.40;_QI=136\|1\|1\|1\|1\|1\|2\|0\|131
chr5_1	exon	20729408	20729788	20729408	ID=Msa0723110-mRNA-1:exon:7904;Parent=Msa0723110-mRNA-1
chr5_1	exon	20729878	20730025	20729878	ID=Msa0723110-mRNA-1:exon:7905;Parent=Msa0723110-mRNA-1
chr5_1	five_prime_UTR	20729408	20729543	20729408	ID=Msa0723110-mRNA-1:five_prime_utr;Parent=Msa0723110-mRNA-1
chr5_1	CDS	20729544	20729788	20729544	ID=Msa0723110-mRNA-1:cds;Parent=Msa0723110-mRNA-1
chr5_1	CDS	20729878	20730025	20729878	ID=Msa0723110-mRNA-1:cds;Parent=Msa0723110-mRNA-1

Gene Sequence

>Msa0723110

ATGGCGAGTGGAGGAGCAAGTGTAACAACAACTATGATTGCAGCTCAAATTGTTGAAGTGGGTGGTGAAACTCTAATGAAAGCAGCCACAAAAGATGGAATGAGTATTTTTATTTTCATTGTTTACAAAAACCTTTTGGCTCTATGTTTTCTTCTACCATCCACTCTCTTCCACCATAGAAAAAGAGCTCCTCCTCCAATTTCAACATCAATTTTCTGCAGATTACTTCTTCTTGGTTGCCTCAGAACTGCAACTCATATGTTAATGACTTCTGGAATTAAATTCAGTTCTCCCATGTTGGCTTCAGCTATTGTTAATCTTGTCCCTCCTTTTACCTTCATACTTGCTATAATTTCAAGGTATGTTGTTTTTATTTTATGGATTAGAATGCAA

Protein sequence

>Msa0723110

MASGGASVTTTMIAAQIVEVGGETLMKAATKDGMSIFIFIVYKNLLALCFLLPSTLFHHRKRAPPPISTSIFCRLLLLGCLRTATHMLMTSGIKFSSPMLASAIVNLVPPFTFILAIISRYVVFILWIRMQ