Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723110 | AFK42019.1 | 91.057 | 123 | 11 | 0 | 1 | 123 | 1 | 123 | 1.14e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723110 | sp|Q945L4|WTR40_ARATH | 43.363 | 113 | 64 | 0 | 8 | 120 | 13 | 125 | 3.21e-23 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723110 | I3SP27 | 91.057 | 123 | 11 | 0 | 1 | 123 | 1 | 123 | 5.44e-72 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0723110 | 0.816782 | 4.629499e-52 | -8.615850e-47 |
| Msa0012040 | Msa0723110 | 0.800368 | 1.489226e-48 | -8.615850e-47 |
| Msa0029850 | Msa0723110 | 0.805240 | 1.468619e-49 | -8.615850e-47 |
| Msa0036140 | Msa0723110 | 0.800557 | 1.362781e-48 | -8.615850e-47 |
| Msa0039330 | Msa0723110 | 0.813040 | 3.130687e-51 | -8.615850e-47 |
| Msa0051930 | Msa0723110 | 0.802805 | 4.711973e-49 | -8.615850e-47 |
| Msa0052030 | Msa0723110 | 0.827091 | 1.894164e-54 | -8.615850e-47 |
| Msa0065950 | Msa0723110 | 0.808072 | 3.706314e-50 | -8.615850e-47 |
| Msa0092990 | Msa0723110 | 0.800169 | 1.634496e-48 | -8.615850e-47 |
| Msa0102120 | Msa0723110 | 0.811771 | 5.924783e-51 | -8.615850e-47 |
| Msa0105700 | Msa0723110 | 0.808801 | 2.590255e-50 | -8.615850e-47 |
| Msa0607540 | Msa0723110 | 0.829797 | 4.210673e-55 | -8.615850e-47 |
| Msa0610430 | Msa0723110 | 0.826830 | 2.187784e-54 | -8.615850e-47 |
| Msa0613460 | Msa0723110 | 0.812647 | 3.815257e-51 | -8.615850e-47 |
| Msa0628740 | Msa0723110 | 0.806252 | 9.002806e-50 | -8.615850e-47 |
| Msa0631990 | Msa0723110 | 0.813472 | 2.516391e-51 | -8.615850e-47 |
| Msa0635380 | Msa0723110 | 0.841418 | 4.809251e-58 | -8.615850e-47 |
| Msa0647830 | Msa0723110 | 0.832157 | 1.109720e-55 | -8.615850e-47 |
| Msa0653490 | Msa0723110 | 0.820108 | 8.165938e-53 | -8.615850e-47 |
| Msa0654010 | Msa0723110 | 0.813167 | 2.935916e-51 | -8.615850e-47 |
| Msa0658570 | Msa0723110 | 0.817478 | 3.230513e-52 | -8.615850e-47 |
| Msa0662650 | Msa0723110 | 0.807335 | 5.316585e-50 | -8.615850e-47 |
| Msa0663920 | Msa0723110 | 0.829823 | 4.148334e-55 | -8.615850e-47 |
| Msa0666140 | Msa0723110 | 0.805256 | 1.457179e-49 | -8.615850e-47 |
| Msa0670660 | Msa0723110 | 0.817550 | 3.110861e-52 | -8.615850e-47 |
| Msa0672690 | Msa0723110 | 0.806776 | 6.979803e-50 | -8.615850e-47 |
| Msa0673460 | Msa0723110 | 0.806162 | 9.403382e-50 | -8.615850e-47 |
| Msa0678820 | Msa0723110 | 0.836235 | 1.053814e-56 | -8.615850e-47 |
| Msa0688070 | Msa0723110 | 0.800863 | 1.180566e-48 | -8.615850e-47 |
| Msa0690440 | Msa0723110 | 0.821835 | 3.269377e-53 | -8.615850e-47 |
| Msa0692230 | Msa0723110 | 0.807785 | 4.265074e-50 | -8.615850e-47 |
| Msa0692950 | Msa0723110 | 0.817172 | 3.785291e-52 | -8.615850e-47 |
| Msa0693380 | Msa0723110 | 0.816664 | 4.920615e-52 | -8.615850e-47 |
| Msa0708860 | Msa0723110 | 0.806795 | 6.915655e-50 | -8.615850e-47 |
| Msa0711790 | Msa0723110 | 0.800919 | 1.149608e-48 | -8.615850e-47 |
| Msa0716840 | Msa0723110 | 0.808511 | 2.987834e-50 | -8.615850e-47 |
| Msa0722910 | Msa0723110 | 0.895585 | 8.336725e-76 | -8.615850e-47 |
| Msa0722920 | Msa0723110 | 0.829479 | 5.032050e-55 | -8.615850e-47 |
| Msa0723110 | Msa0723120 | 0.829682 | 4.491448e-55 | -8.615850e-47 |
| Msa0723110 | Msa0723130 | 0.819691 | 1.016660e-52 | -8.615850e-47 |
| Msa0723110 | Msa0724560 | 0.804992 | 1.655000e-49 | -8.615850e-47 |
| Msa0723110 | Msa0731180 | 0.807997 | 3.844796e-50 | -8.615850e-47 |
| Msa0723110 | Msa0747260 | 0.826540 | 2.565069e-54 | -8.615850e-47 |
| Msa0723110 | Msa0747270 | 0.803192 | 3.920249e-49 | -8.615850e-47 |
| Msa0723110 | Msa0767080 | 0.806510 | 7.943123e-50 | -8.615850e-47 |
| Msa0723110 | Msa0771720 | 0.806476 | 8.074912e-50 | -8.615850e-47 |
| Msa0723110 | Msa0777230 | 0.802522 | 5.390630e-49 | -8.615850e-47 |
| Msa0723110 | Msa0793380 | 0.807942 | 3.950905e-50 | -8.615850e-47 |
| Msa0723110 | Msa0806090 | 0.806775 | 6.981593e-50 | -8.615850e-47 |
| Msa0723110 | Msa0820850 | 0.807260 | 5.514032e-50 | -8.615850e-47 |
| Msa0723110 | Msa0835730 | 0.810588 | 1.069915e-50 | -8.615850e-47 |
| Msa0723110 | Msa0843250 | 0.956428 | 3.016789e-114 | -8.615850e-47 |
| Msa0723110 | Msa0843260 | 0.823321 | 1.474763e-53 | -8.615850e-47 |
| Msa0723110 | Msa0846810 | 0.804177 | 2.448160e-49 | -8.615850e-47 |
| Msa0723110 | Msa0848900 | 0.805145 | 1.537352e-49 | -8.615850e-47 |
| Msa0723110 | Msa0849030 | 0.814812 | 1.273468e-51 | -8.615850e-47 |
| Msa0723110 | Msa0860410 | 0.807611 | 4.645891e-50 | -8.615850e-47 |
| Msa0723110 | Msa0861130 | 0.811156 | 8.061732e-51 | -8.615850e-47 |
| Msa0723110 | Msa0869120 | 0.822732 | 2.024072e-53 | -8.615850e-47 |
| Msa0723110 | Msa0870150 | 0.816083 | 6.637431e-52 | -8.615850e-47 |
| Msa0723110 | Msa0882690 | 0.816664 | 4.920576e-52 | -8.615850e-47 |
| Msa0723110 | Msa0927380 | 0.812918 | 3.329327e-51 | -8.615850e-47 |
| Msa0723110 | Msa0935850 | 0.814567 | 1.442484e-51 | -8.615850e-47 |
| Msa0723110 | Msa0942070 | 0.803024 | 4.245925e-49 | -8.615850e-47 |
| Msa0723110 | Msa0944550 | 0.837621 | 4.665899e-57 | -8.615850e-47 |
| Msa0723110 | Msa0947760 | 0.809867 | 1.530210e-50 | -8.615850e-47 |
| Msa0723110 | Msa0976670 | 0.816098 | 6.588353e-52 | -8.615850e-47 |
| Msa0723110 | Msa0982270 | 0.849794 | 2.571833e-60 | -8.615850e-47 |
| Msa0723110 | Msa0992490 | -0.834939 | 2.242616e-56 | -8.615850e-47 |
| Msa0723110 | Msa1003620 | 0.813839 | 2.089210e-51 | -8.615850e-47 |
| Msa0723110 | Msa1006850 | 0.802199 | 6.282140e-49 | -8.615850e-47 |
| Msa0723110 | Msa1012830 | 0.833721 | 4.532446e-56 | -8.615850e-47 |
| Msa0723110 | Msa1014540 | 0.806895 | 6.585427e-50 | -8.615850e-47 |
| Msa0723110 | Msa1039880 | 0.805216 | 1.485739e-49 | -8.615850e-47 |
| Msa0723110 | Msa1046460 | 0.808539 | 2.946461e-50 | -8.615850e-47 |
| Msa0723110 | Msa1054410 | 0.828756 | 7.534148e-55 | -8.615850e-47 |
| Msa0723110 | Msa1075080 | -0.805738 | 1.154804e-49 | -8.615850e-47 |
| Msa0723110 | Msa1075220 | -0.839180 | 1.849165e-57 | -8.615850e-47 |
| Msa0723110 | Msa1084260 | 0.801539 | 8.584927e-49 | -8.615850e-47 |
| Msa0723110 | Msa1085300 | 0.802493 | 5.466808e-49 | -8.615850e-47 |
| Msa0723110 | Msa1090260 | 0.852317 | 4.999144e-61 | -8.615850e-47 |
| Msa0723110 | Msa1092090 | 0.810048 | 1.398611e-50 | -8.615850e-47 |
| Msa0723110 | Msa1116130 | -0.831020 | 2.114659e-55 | -8.615850e-47 |
| Msa0723110 | Msa1124540 | -0.813425 | 2.575899e-51 | -8.615850e-47 |
| Msa0723110 | Msa1129550 | 0.802870 | 4.569490e-49 | -8.615850e-47 |
| Msa0723110 | Msa1139000 | -0.821787 | 3.353851e-53 | -8.615850e-47 |
| Msa0723110 | Msa1143930 | -0.822503 | 2.288220e-53 | -8.615850e-47 |
| Msa0723110 | Msa1144720 | -0.813263 | 2.796678e-51 | -8.615850e-47 |
| Msa0723110 | Msa1158670 | 0.806037 | 9.990407e-50 | -8.615850e-47 |
| Msa0723110 | Msa1162550 | -0.833570 | 4.943548e-56 | -8.615850e-47 |
| Msa0723110 | Msa1183100 | -0.828926 | 6.850172e-55 | -8.615850e-47 |
| Msa0723110 | Msa1202770 | -0.829089 | 6.256281e-55 | -8.615850e-47 |
| Msa0723110 | Msa1207380 | 0.812416 | 4.287253e-51 | -8.615850e-47 |
| Msa0723110 | Msa1212170 | 0.817093 | 3.942829e-52 | -8.615850e-47 |
| Msa0723110 | Msa1212250 | 0.806259 | 8.974455e-50 | -8.615850e-47 |
| Msa0723110 | Msa1217430 | -0.826184 | 3.118845e-54 | -8.615850e-47 |
| Msa0723110 | Msa1217810 | 0.801835 | 7.463170e-49 | -8.615850e-47 |
| Msa0723110 | Msa1224480 | 0.800316 | 1.525884e-48 | -8.615850e-47 |
| Msa0723110 | Msa1224810 | 0.807013 | 6.218531e-50 | -8.615850e-47 |
| Msa0723110 | Msa1233500 | 0.824864 | 6.404930e-54 | -8.615850e-47 |
| Msa0723110 | Msa1233890 | 0.811244 | 7.712708e-51 | -8.615850e-47 |
| Msa0723110 | Msa1246500 | 0.814327 | 1.629802e-51 | -8.615850e-47 |
| Msa0723110 | Msa1258380 | -0.852997 | 3.196273e-61 | -8.615850e-47 |
| Msa0723110 | Msa1262920 | 0.809346 | 1.980323e-50 | -8.615850e-47 |
| Msa0723110 | Msa1271200 | 0.813282 | 2.770056e-51 | -8.615850e-47 |
| Msa0723110 | Msa1276440 | 0.816793 | 4.605452e-52 | -8.615850e-47 |
| Msa0723110 | Msa1277280 | 0.830876 | 2.294174e-55 | -8.615850e-47 |
| Msa0723110 | Msa1277660 | 0.803000 | 4.294236e-49 | -8.615850e-47 |
| Msa0723110 | Msa1279210 | 0.823199 | 1.575000e-53 | -8.615850e-47 |
| Msa0723110 | Msa1284680 | 0.806875 | 6.650747e-50 | -8.615850e-47 |
| Msa0723110 | Msa1295540 | -0.820268 | 7.503772e-53 | -8.615850e-47 |
| Msa0723110 | Msa1302100 | 0.815232 | 1.027176e-51 | -8.615850e-47 |
| Msa0723110 | Msa1302190 | -0.808486 | 3.025228e-50 | -8.615850e-47 |
| Msa0723110 | Msa1305340 | 0.805220 | 1.482618e-49 | -8.615850e-47 |
| Msa0723110 | Msa1306750 | 0.806287 | 8.851385e-50 | -8.615850e-47 |
| Msa0723110 | Msa1307740 | 0.844847 | 5.864971e-59 | -8.615850e-47 |
| Msa0723110 | Msa1322190 | 0.808561 | 2.914845e-50 | -8.615850e-47 |
| Msa0723110 | Msa1348600 | 0.814021 | 1.904258e-51 | -8.615850e-47 |
| Msa0723110 | Msa1362880 | 0.827431 | 1.570375e-54 | -8.615850e-47 |
| Msa0723110 | Msa1369530 | 0.816715 | 4.793341e-52 | -8.615850e-47 |
| Msa0723110 | Msa1370340 | 0.806321 | 8.708573e-50 | -8.615850e-47 |
| Msa0723110 | Msa1376890 | 0.820905 | 5.357976e-53 | -8.615850e-47 |
| Msa0723110 | Msa1382160 | 0.804201 | 2.419708e-49 | -8.615850e-47 |
| Msa0723110 | Msa1384350 | 0.806887 | 6.613134e-50 | -8.615850e-47 |
| Msa0723110 | Msa1403340 | 0.832844 | 7.496957e-56 | -8.615850e-47 |
| Msa0723110 | Msa1419960 | 0.861074 | 1.324777e-63 | -8.615850e-47 |
| Msa0723110 | Msa1419970 | 0.813748 | 2.187494e-51 | -8.615850e-47 |
| Msa0723110 | Msa1427230 | 0.804569 | 2.028662e-49 | -8.615850e-47 |
| Msa0723110 | Msa1444250 | -0.853961 | 1.689851e-61 | -8.615850e-47 |
| Msa0723110 | Msa1451620 | -0.840403 | 8.880923e-58 | -8.615850e-47 |
| Msa0723110 | Msa1459950 | 0.805161 | 1.525680e-49 | -8.615850e-47 |
| Msa0723110 | Msa1460830 | 0.804734 | 1.873471e-49 | -8.615850e-47 |
| Msa0723110 | Msa1462060 | 0.805289 | 1.434368e-49 | -8.615850e-47 |
| Msa0723110 | Msa1462070 | 0.803797 | 2.936560e-49 | -8.615850e-47 |
| Msa0723110 | Msa1464940 | 0.825011 | 5.914036e-54 | -8.615850e-47 |
| Msa0152170 | Msa0723110 | 0.801052 | 1.080057e-48 | -8.615850e-47 |
| Msa0153830 | Msa0723110 | 0.804691 | 1.912916e-49 | -8.615850e-47 |
| Msa0169820 | Msa0723110 | 0.822126 | 2.799073e-53 | -8.615850e-47 |
| Msa0171540 | Msa0723110 | 0.805703 | 1.174748e-49 | -8.615850e-47 |
| Msa0178860 | Msa0723110 | -0.810350 | 1.204228e-50 | -8.615850e-47 |
| Msa0178930 | Msa0723110 | 0.824443 | 8.050109e-54 | -8.615850e-47 |
| Msa0187220 | Msa0723110 | 0.806436 | 8.234486e-50 | -8.615850e-47 |
| Msa0216530 | Msa0723110 | 0.827921 | 1.197794e-54 | -8.615850e-47 |
| Msa0223410 | Msa0723110 | -0.809208 | 2.120276e-50 | -8.615850e-47 |
| Msa0226530 | Msa0723110 | 0.818399 | 2.000314e-52 | -8.615850e-47 |
| Msa0226890 | Msa0723110 | 0.835736 | 1.410144e-56 | -8.615850e-47 |
| Msa0236630 | Msa0723110 | 0.800970 | 1.122339e-48 | -8.615850e-47 |
| Msa0372340 | Msa0723110 | 0.821143 | 4.723341e-53 | -8.615850e-47 |
| Msa0376590 | Msa0723110 | 0.809849 | 1.544331e-50 | -8.615850e-47 |
| Msa0379640 | Msa0723110 | 0.845332 | 4.339052e-59 | -8.615850e-47 |
| Msa0388840 | Msa0723110 | 0.822990 | 1.762478e-53 | -8.615850e-47 |
| Msa0389810 | Msa0723110 | 0.848313 | 6.635361e-60 | -8.615850e-47 |
| Msa0394340 | Msa0723110 | 0.826481 | 2.649709e-54 | -8.615850e-47 |
| Msa0397390 | Msa0723110 | 0.829984 | 3.790929e-55 | -8.615850e-47 |
| Msa0399340 | Msa0723110 | 0.805651 | 1.204436e-49 | -8.615850e-47 |
| Msa0412840 | Msa0723110 | 0.838305 | 3.111369e-57 | -8.615850e-47 |
| Msa0420960 | Msa0723110 | 0.808778 | 2.620631e-50 | -8.615850e-47 |
| Msa0429290 | Msa0723110 | 0.806367 | 8.512977e-50 | -8.615850e-47 |
| Msa0433410 | Msa0723110 | -0.816421 | 5.579766e-52 | -8.615850e-47 |
| Msa0442200 | Msa0723110 | 0.828365 | 9.360854e-55 | -8.615850e-47 |
| Msa0457510 | Msa0723110 | 0.813257 | 2.804739e-51 | -8.615850e-47 |
| Msa0466390 | Msa0723110 | 0.802707 | 4.936654e-49 | -8.615850e-47 |
| Msa0467060 | Msa0723110 | 0.801027 | 1.092945e-48 | -8.615850e-47 |
| Msa0468130 | Msa0723110 | 0.844951 | 5.498824e-59 | -8.615850e-47 |
| Msa0469940 | Msa0723110 | -0.806159 | 9.417217e-50 | -8.615850e-47 |
| Msa0475580 | Msa0723110 | 0.805617 | 1.224260e-49 | -8.615850e-47 |
| Msa0477130 | Msa0723110 | -0.816762 | 4.679780e-52 | -8.615850e-47 |
| Msa0482190 | Msa0723110 | -0.854329 | 1.323174e-61 | -8.615850e-47 |
| Msa0253200 | Msa0723110 | 0.800087 | 1.698659e-48 | -8.615850e-47 |
| Msa0269450 | Msa0723110 | 0.803502 | 3.381402e-49 | -8.615850e-47 |
| Msa0269810 | Msa0723110 | 0.803796 | 2.938483e-49 | -8.615850e-47 |
| Msa0292030 | Msa0723110 | 0.803147 | 4.004896e-49 | -8.615850e-47 |
| Msa0295330 | Msa0723110 | 0.800536 | 1.376281e-48 | -8.615850e-47 |
| Msa0298620 | Msa0723110 | 0.823547 | 1.306453e-53 | -8.615850e-47 |
| Msa0315290 | Msa0723110 | 0.842721 | 2.175640e-58 | -8.615850e-47 |
| Msa0339620 | Msa0723110 | 0.802967 | 4.363866e-49 | -8.615850e-47 |
| Msa0340450 | Msa0723110 | 0.817056 | 4.018743e-52 | -8.615850e-47 |
| Msa0344690 | Msa0723110 | -0.817078 | 3.973926e-52 | -8.615850e-47 |
| Msa0344830 | Msa0723110 | 0.827821 | 1.266126e-54 | -8.615850e-47 |
| Msa0344910 | Msa0723110 | 0.804452 | 2.145297e-49 | -8.615850e-47 |
| Msa0344980 | Msa0723110 | 0.805354 | 1.390105e-49 | -8.615850e-47 |
| Msa0347610 | Msa0723110 | 0.813497 | 2.484362e-51 | -8.615850e-47 |
| Msa0485500 | Msa0723110 | -0.850469 | 1.663839e-60 | -8.615850e-47 |
| Msa0488270 | Msa0723110 | 0.801753 | 7.758055e-49 | -8.615850e-47 |
| Msa0489610 | Msa0723110 | 0.815316 | 9.839722e-52 | -8.615850e-47 |
| Msa0500720 | Msa0723110 | 0.803654 | 3.144919e-49 | -8.615850e-47 |
| Msa0512750 | Msa0723110 | 0.831360 | 1.744567e-55 | -8.615850e-47 |
| Msa0516440 | Msa0723110 | 0.800285 | 1.548185e-48 | -8.615850e-47 |
| Msa0519220 | Msa0723110 | 0.807405 | 5.135838e-50 | -8.615850e-47 |
| Msa0536220 | Msa0723110 | 0.829513 | 4.936299e-55 | -8.615850e-47 |
| Msa0543900 | Msa0723110 | 0.824620 | 7.315213e-54 | -8.615850e-47 |
| Msa0545080 | Msa0723110 | 0.803952 | 2.726194e-49 | -8.615850e-47 |
| Msa0553460 | Msa0723110 | 0.840538 | 8.187499e-58 | -8.615850e-47 |
| Msa0558690 | Msa0723110 | 0.811286 | 7.554011e-51 | -8.615850e-47 |
| Msa0562440 | Msa0723110 | 0.823598 | 1.270559e-53 | -8.615850e-47 |
| Msa0570330 | Msa0723110 | 0.827819 | 1.267596e-54 | -8.615850e-47 |
| Msa0585230 | Msa0723110 | 0.817406 | 3.353610e-52 | -8.615850e-47 |
| Msa0599770 | Msa0723110 | 0.828552 | 8.438008e-55 | -8.615850e-47 |
| Msa0599890 | Msa0723110 | 0.809257 | 2.068861e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723110 | MtrunA17_Chr5g0413951 | 93.333 | 120 | 8 | 0 | 1 | 120 | 1 | 120 | 2.51e-74 | 224 |
| Msa0723110 | MtrunA17_Chr5g0413941 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 5.50e-67 | 206 |
| Msa0723110 | MtrunA17_Chr5g0413931 | 75.424 | 118 | 27 | 1 | 3 | 120 | 4 | 119 | 8.52e-58 | 182 |
| Msa0723110 | MtrunA17_Chr5g0413921 | 67.241 | 116 | 38 | 0 | 5 | 120 | 5 | 120 | 1.36e-50 | 164 |
| Msa0723110 | MtrunA17_Chr7g0227921 | 45.872 | 109 | 59 | 0 | 12 | 120 | 16 | 124 | 1.16e-23 | 93.6 |
| Msa0723110 | MtrunA17_Chr6g0451181 | 43.119 | 109 | 62 | 0 | 12 | 120 | 17 | 125 | 3.51e-23 | 87.8 |
| Msa0723110 | MtrunA17_Chr6g0451261 | 41.441 | 111 | 65 | 0 | 10 | 120 | 14 | 124 | 2.39e-22 | 91.3 |
| Msa0723110 | MtrunA17_Chr6g0451251 | 52.041 | 98 | 46 | 1 | 24 | 120 | 29 | 126 | 7.03e-22 | 89.0 |
| Msa0723110 | MtrunA17_Chr6g0451211 | 41.441 | 111 | 63 | 1 | 12 | 120 | 17 | 127 | 7.56e-21 | 86.3 |
| Msa0723110 | MtrunA17_Chr6g0451171 | 42.708 | 96 | 55 | 0 | 25 | 120 | 30 | 125 | 7.93e-21 | 85.9 |
| Msa0723110 | MtrunA17_Chr6g0451201 | 44.954 | 109 | 58 | 1 | 12 | 120 | 17 | 123 | 5.57e-20 | 83.6 |
| Msa0723110 | MtrunA17_Chr3g0126101 | 43.119 | 109 | 61 | 1 | 12 | 120 | 11 | 118 | 1.19e-18 | 80.1 |
| Msa0723110 | MtrunA17_Chr5g0413961 | 38.532 | 109 | 66 | 1 | 12 | 120 | 19 | 126 | 8.70e-18 | 77.8 |
| Msa0723110 | MtrunA17_Chr1g0150151 | 39.286 | 112 | 67 | 1 | 10 | 120 | 14 | 125 | 1.76e-16 | 73.9 |
| Msa0723110 | MtrunA17_Chr4g0059311 | 40.541 | 111 | 63 | 3 | 12 | 120 | 16 | 125 | 2.62e-15 | 70.9 |
| Msa0723110 | MtrunA17_Chr3g0126091 | 39.474 | 114 | 66 | 3 | 12 | 122 | 16 | 129 | 8.33e-14 | 66.6 |
| Msa0723110 | MtrunA17_Chr1g0155761 | 37.273 | 110 | 67 | 2 | 12 | 120 | 26 | 134 | 1.98e-13 | 65.5 |
| Msa0723110 | MtrunA17_Chr3g0114731 | 38.182 | 110 | 66 | 2 | 12 | 120 | 23 | 131 | 2.70e-13 | 65.1 |
| Msa0723110 | MtrunA17_Chr1g0182291 | 36.364 | 99 | 61 | 2 | 23 | 120 | 31 | 128 | 9.54e-12 | 60.8 |
| Msa0723110 | MtrunA17_Chr5g0408031 | 31.481 | 108 | 72 | 2 | 12 | 118 | 15 | 121 | 1.37e-11 | 60.5 |
| Msa0723110 | MtrunA17_Chr5g0408001 | 32.727 | 110 | 72 | 2 | 12 | 120 | 15 | 123 | 2.67e-11 | 59.3 |
| Msa0723110 | MtrunA17_Chr6g0463971 | 34.259 | 108 | 68 | 2 | 12 | 118 | 21 | 126 | 4.47e-11 | 58.9 |
| Msa0723110 | MtrunA17_Chr3g0129601 | 37.113 | 97 | 59 | 2 | 25 | 120 | 47 | 142 | 5.40e-11 | 58.5 |
| Msa0723110 | MtrunA17_Chr8g0369841 | 32.727 | 110 | 72 | 2 | 10 | 118 | 12 | 120 | 8.52e-11 | 58.2 |
| Msa0723110 | MtrunA17_Chr3g0114711 | 34.862 | 109 | 69 | 2 | 13 | 120 | 20 | 127 | 8.55e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723110 | AT5G40210.1 | 43.363 | 113 | 64 | 0 | 8 | 120 | 13 | 125 | 3.26e-24 | 95.1 |
| Msa0723110 | AT5G40230.1 | 42.342 | 111 | 64 | 0 | 10 | 120 | 23 | 133 | 5.26e-20 | 84.3 |
| Msa0723110 | AT3G28050.1 | 45.045 | 111 | 61 | 0 | 10 | 120 | 14 | 124 | 6.24e-20 | 84.0 |
| Msa0723110 | AT5G40240.1 | 40.367 | 109 | 65 | 0 | 12 | 120 | 24 | 132 | 4.81e-19 | 81.6 |
| Msa0723110 | AT5G40240.3 | 40.367 | 109 | 65 | 0 | 12 | 120 | 24 | 132 | 4.81e-19 | 81.6 |
| Msa0723110 | AT5G40240.2 | 40.367 | 109 | 65 | 0 | 12 | 120 | 38 | 146 | 5.12e-19 | 81.6 |
| Msa0723110 | AT3G28100.3 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 2.62e-17 | 75.9 |
| Msa0723110 | AT3G28100.2 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 3.43e-17 | 75.1 |
| Msa0723110 | AT3G28100.1 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 5.17e-17 | 75.9 |
| Msa0723110 | AT4G15540.1 | 42.342 | 111 | 64 | 0 | 10 | 120 | 19 | 129 | 1.08e-16 | 75.1 |
| Msa0723110 | AT4G15540.2 | 42.342 | 111 | 64 | 0 | 10 | 120 | 19 | 129 | 1.08e-16 | 75.1 |
| Msa0723110 | AT3G28080.3 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 2.12e-16 | 73.9 |
| Msa0723110 | AT3G28080.1 | 46.847 | 111 | 59 | 0 | 10 | 120 | 16 | 126 | 4.03e-16 | 73.6 |
| Msa0723110 | AT3G28130.6 | 42.609 | 115 | 66 | 0 | 6 | 120 | 11 | 125 | 1.67e-15 | 70.1 |
| Msa0723110 | AT3G28130.4 | 42.609 | 115 | 66 | 0 | 6 | 120 | 11 | 125 | 3.36e-15 | 70.1 |
| Msa0723110 | AT3G28130.2 | 42.609 | 115 | 66 | 0 | 6 | 120 | 11 | 125 | 3.83e-15 | 70.9 |
| Msa0723110 | AT5G07050.1 | 34.545 | 110 | 70 | 2 | 12 | 120 | 22 | 130 | 1.26e-12 | 63.5 |
| Msa0723110 | AT5G45370.2 | 32.727 | 110 | 72 | 2 | 10 | 118 | 22 | 130 | 2.88e-11 | 59.7 |
| Msa0723110 | AT5G45370.4 | 32.727 | 110 | 72 | 2 | 10 | 118 | 22 | 130 | 2.88e-11 | 59.7 |
| Msa0723110 | AT5G45370.1 | 32.727 | 110 | 72 | 2 | 10 | 118 | 22 | 130 | 3.04e-11 | 59.7 |
| Msa0723110 | AT2G39510.1 | 34.234 | 111 | 71 | 2 | 11 | 120 | 11 | 120 | 5.32e-11 | 58.9 |
| Msa0723110 | AT3G28070.1 | 45.946 | 111 | 60 | 0 | 10 | 120 | 19 | 129 | 6.04e-11 | 58.9 |
| Msa0723110 | AT3G28070.3 | 45.946 | 111 | 60 | 0 | 10 | 120 | 19 | 129 | 6.62e-11 | 58.5 |
Find 23 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAATTGATGTTGAAAT+TGG | 0.226936 | 5_1:-20729739 | None:intergenic |
| TTCTGCAGATTACTTCTTCT+TGG | 0.233740 | 5_1:+20729757 | Msa0723110:CDS |
| ACTCATATGTTAATGACTTC+TGG | 0.288657 | 5_1:+20729885 | Msa0723110:CDS |
| ATAGCAAGTATGAAGGTAAA+AGG | 0.300566 | 5_1:-20729960 | None:intergenic |
| GTCAGAATTAACAAGCAAAT+TGG | 0.319317 | 5_1:+20729494 | Msa0723110:five_prime_UTR |
| TACTTCTTCTTGGTTGCCTC+AGG | 0.379746 | 5_1:+20729767 | Msa0723110:CDS |
| TCATACTTGCTATAATTTCA+AGG | 0.384041 | 5_1:+20729970 | Msa0723110:CDS |
| AAATATCAAAATTGTTAGGT+TGG | 0.433167 | 5_1:-20729409 | None:intergenic |
| ATGAAAGCAGCCACAAAAGA+TGG | 0.452927 | 5_1:+20729619 | Msa0723110:CDS |
| AAAATTGATGTTGAAATTGG+AGG | 0.500522 | 5_1:-20729736 | None:intergenic |
| CTATGGTGGAAGAGAGTGGA+TGG | 0.506366 | 5_1:-20729700 | None:intergenic |
| TGAAATTATAGCAAGTATGA+AGG | 0.526932 | 5_1:-20729967 | None:intergenic |
| AACAATAGCTGAAGCCAACA+TGG | 0.534674 | 5_1:-20729925 | None:intergenic |
| GAAGAAAACATAGAGCCAAA+AGG | 0.540600 | 5_1:-20729675 | None:intergenic |
| ATTGATGTTGAAATTGGAGG+AGG | 0.546987 | 5_1:-20729733 | None:intergenic |
| TAAATTCAGTTCTCCCATGT+TGG | 0.547322 | 5_1:+20729911 | Msa0723110:CDS |
| TGCAGCTCAAATTGTTGAAG+TGG | 0.587755 | 5_1:+20729582 | Msa0723110:CDS |
| GCAAGTATGAAGGTAAAAGG+AGG | 0.605835 | 5_1:-20729957 | None:intergenic |
| CAAGTATGAAGGTAAAAGGA+GGG | 0.622141 | 5_1:-20729956 | None:intergenic |
| GCAGCTCAAATTGTTGAAGT+GGG | 0.628887 | 5_1:+20729583 | Msa0723110:CDS |
| ACAATAGCTGAAGCCAACAT+GGG | 0.645656 | 5_1:-20729924 | None:intergenic |
| TCGGACTAAAGTTAAAGTTG+AGG | 0.649103 | 5_1:+20729439 | Msa0723110:five_prime_UTR |
| GCTCAAATTGTTGAAGTGGG+TGG | 0.711164 | 5_1:+20729586 | Msa0723110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATATCAAAATTGTT+AGG | - | chr5_1:20729416-20729435 | None:intergenic | 10.0% |
| !!! | ATTTTGATATTTTTATTAGT+CGG | + | chr5_1:20729420-20729439 | Msa0723110:five_prime_UTR | 10.0% |
| !! | ATTATTATAAAGATTGAATT+TGG | + | chr5_1:20729823-20729842 | Msa0723110:intron | 10.0% |
| !! | AAATATCAAAATTGTTAGGT+TGG | - | chr5_1:20729412-20729431 | None:intergenic | 20.0% |
| !!! | GGTATGTTGTTTTTATTTTA+TGG | + | chr5_1:20729991-20730010 | Msa0723110:CDS | 20.0% |
| !!! | CGTCTTACTTTTATAATATC+TGG | - | chr5_1:20729475-20729494 | None:intergenic | 25.0% |
| !! | CATTGTTTACAAAAACCTTT+TGG | + | chr5_1:20729660-20729679 | Msa0723110:CDS | 25.0% |
| ! | AAAATTGATGTTGAAATTGG+AGG | - | chr5_1:20729739-20729758 | None:intergenic | 25.0% |
| ! | CAGAAAATTGATGTTGAAAT+TGG | - | chr5_1:20729742-20729761 | None:intergenic | 25.0% |
| ! | TGAAATTATAGCAAGTATGA+AGG | - | chr5_1:20729970-20729989 | None:intergenic | 25.0% |
| !!! | TCATACTTGCTATAATTTCA+AGG | + | chr5_1:20729970-20729989 | Msa0723110:CDS | 25.0% |
| GTCAGAATTAACAAGCAAAT+TGG | + | chr5_1:20729494-20729513 | Msa0723110:five_prime_UTR | 30.0% | |
| ! | AATACTCATTCCATCTTTTG+TGG | - | chr5_1:20729632-20729651 | None:intergenic | 30.0% |
| TTTGGCAAAATAGAGTGATA+TGG | + | chr5_1:20729841-20729860 | Msa0723110:intron | 30.0% | |
| ACTCATATGTTAATGACTTC+TGG | + | chr5_1:20729885-20729904 | Msa0723110:CDS | 30.0% | |
| ATAGCAAGTATGAAGGTAAA+AGG | - | chr5_1:20729963-20729982 | None:intergenic | 30.0% | |
| TCGGACTAAAGTTAAAGTTG+AGG | + | chr5_1:20729439-20729458 | Msa0723110:five_prime_UTR | 35.0% | |
| CAGACAGAGACAAGAAAAAA+TGG | + | chr5_1:20729525-20729544 | Msa0723110:exon | 35.0% | |
| GAAGAAAACATAGAGCCAAA+AGG | - | chr5_1:20729678-20729697 | None:intergenic | 35.0% | |
| ATTGATGTTGAAATTGGAGG+AGG | - | chr5_1:20729736-20729755 | None:intergenic | 35.0% | |
| TTCTGCAGATTACTTCTTCT+TGG | + | chr5_1:20729757-20729776 | Msa0723110:CDS | 35.0% | |
| TACTATGTTGTTCATACCTG+AGG | - | chr5_1:20729786-20729805 | None:intergenic | 35.0% | |
| TAAATTCAGTTCTCCCATGT+TGG | + | chr5_1:20729911-20729930 | Msa0723110:CDS | 35.0% | |
| CAAGTATGAAGGTAAAAGGA+GGG | - | chr5_1:20729959-20729978 | None:intergenic | 35.0% | |
| AGACAAGAAAAAATGGCGAG+TGG | + | chr5_1:20729532-20729551 | Msa0723110:exon | 40.0% | |
| TGCAGCTCAAATTGTTGAAG+TGG | + | chr5_1:20729582-20729601 | Msa0723110:CDS | 40.0% | |
| GCAGCTCAAATTGTTGAAGT+GGG | + | chr5_1:20729583-20729602 | Msa0723110:CDS | 40.0% | |
| ATGAAAGCAGCCACAAAAGA+TGG | + | chr5_1:20729619-20729638 | Msa0723110:CDS | 40.0% | |
| !! | TTTTCTATGGTGGAAGAGAG+TGG | - | chr5_1:20729707-20729726 | None:intergenic | 40.0% |
| ACAATAGCTGAAGCCAACAT+GGG | - | chr5_1:20729927-20729946 | None:intergenic | 40.0% | |
| AACAATAGCTGAAGCCAACA+TGG | - | chr5_1:20729928-20729947 | None:intergenic | 40.0% | |
| GCAAGTATGAAGGTAAAAGG+AGG | - | chr5_1:20729960-20729979 | None:intergenic | 40.0% | |
| CAAGAAAAAATGGCGAGTGG+AGG | + | chr5_1:20729535-20729554 | Msa0723110:exon | 45.0% | |
| GCTCAAATTGTTGAAGTGGG+TGG | + | chr5_1:20729586-20729605 | Msa0723110:CDS | 45.0% | |
| ! | GAGGAGCTCTTTTTCTATGG+TGG | - | chr5_1:20729717-20729736 | None:intergenic | 45.0% |
| ! | GAGGAGGAGCTCTTTTTCTA+TGG | - | chr5_1:20729720-20729739 | None:intergenic | 45.0% |
| TACTTCTTCTTGGTTGCCTC+AGG | + | chr5_1:20729767-20729786 | Msa0723110:CDS | 45.0% | |
| ! | CTATGGTGGAAGAGAGTGGA+TGG | - | chr5_1:20729703-20729722 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 20729408 | 20730025 | 20729408 | ID=Msa0723110;Name=Msa0723110 |
| chr5_1 | mRNA | 20729408 | 20730025 | 20729408 | ID=Msa0723110-mRNA-1;Parent=Msa0723110;Name=Msa0723110-mRNA-1;_AED=0.40;_eAED=0.40;_QI=136|1|1|1|1|1|2|0|131 |
| chr5_1 | exon | 20729408 | 20729788 | 20729408 | ID=Msa0723110-mRNA-1:exon:7904;Parent=Msa0723110-mRNA-1 |
| chr5_1 | exon | 20729878 | 20730025 | 20729878 | ID=Msa0723110-mRNA-1:exon:7905;Parent=Msa0723110-mRNA-1 |
| chr5_1 | five_prime_UTR | 20729408 | 20729543 | 20729408 | ID=Msa0723110-mRNA-1:five_prime_utr;Parent=Msa0723110-mRNA-1 |
| chr5_1 | CDS | 20729544 | 20729788 | 20729544 | ID=Msa0723110-mRNA-1:cds;Parent=Msa0723110-mRNA-1 |
| chr5_1 | CDS | 20729878 | 20730025 | 20729878 | ID=Msa0723110-mRNA-1:cds;Parent=Msa0723110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
