AlfalfaGEDB | Msa1037710

M. sativa cultivar zhongmu-4 / Msa1037710

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037710	XP_003626559.1	87.234	188	12	2	1	186	151	328	4.69e-108	322

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037710	G7L427	87.234	188	12	2	1	186	151	328	2.24e-108	322

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TFs/TRs:

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Gene ID	Type	Classification
Msa1037710	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040580	Msa1037710	0.820163	7.928931e-53	-8.615850e-47
Msa0051200	Msa1037710	0.806101	9.686293e-50	-8.615850e-47
Msa0051460	Msa1037710	0.810458	1.141359e-50	-8.615850e-47
Msa0077390	Msa1037710	0.805250	1.461403e-49	-8.615850e-47
Msa0088550	Msa1037710	0.810793	9.658645e-51	-8.615850e-47
Msa0101840	Msa1037710	0.812592	3.922967e-51	-8.615850e-47
Msa0111310	Msa1037710	0.806767	7.009784e-50	-8.615850e-47
Msa0135360	Msa1037710	0.809759	1.614230e-50	-8.615850e-47
Msa0143920	Msa1037710	0.824487	7.860429e-54	-8.615850e-47
Msa0153430	Msa1037710	0.805254	1.458749e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037710	MtrunA17_Chr7g0275531	87.234	188	12	2	1	186	151	328	4.32e-112	322
Msa1037710	MtrunA17_Chr8g0347251	39.806	206	71	12	1	182	169	345	2.69e-22	92.0
Msa1037710	MtrunA17_Chr8g0387981	33.019	212	100	6	1	185	165	361	3.33e-18	80.9
Msa1037710	MtrunA17_Chr3g0126391	89.286	28	3	0	1	28	166	193	7.14e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037710	AT2G46400.1	30.769	182	94	8	1	176	137	292	1.69e-11	62.0

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Find 39 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTCAGGAGTATTGAG+AGG	0.566440	7_1:-74428099	None:intergenic
AAGATATCCAAATCAAGGAT+TGG	0.520860	7_1:-74428045	None:intergenic
AATATTCAGGAGTATTGAGA+GGG	0.594267	7_1:-74428098	None:intergenic
AGAGACTAGTTTCACTTCCA+AGG	0.541625	7_1:+74426940	Msa1037710:CDS
AGGGTGCCTAGCAACAAAGC+AGG	0.623925	7_1:+74426745	None:intergenic
ATAATTGAGGTAACTTACAG+AGG	0.655185	7_1:+74426794	Msa1037710:CDS
ATCAGAAAATGAGATAATGA+TGG	0.516212	7_1:+74427048	Msa1037710:CDS
ATTCTGAAGTTGGTCCATTT+TGG	0.232813	7_1:-74427123	None:intergenic
CAAATCAAGGATTGGTGAAT+TGG	0.310097	7_1:-74428037	None:intergenic
CAATTCACCAATCCTTGATT+TGG	0.271018	7_1:+74428038	Msa1037710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGATCCAACAATAATTG+AGG	+	chr7_1:74426781-74426800	Msa1037710:CDS	30.0%
ATAATTGAGGTAACTTACAG+AGG	+	chr7_1:74426794-74426813	Msa1037710:CDS	30.0%
TCCCTCAAAGTTAAAGATAA+AGG	+	chr7_1:74426865-74426884	Msa1037710:CDS	30.0%
CCCTCAAAGTTAAAGATAAA+GGG	+	chr7_1:74426866-74426885	Msa1037710:CDS	30.0%
GGTTTGTCAGAATATCAATT+GGG	+	chr7_1:74427085-74427104	Msa1037710:CDS	30.0%
GAATCTAATGGTGAGAAATA+TGG	-	chr7_1:74427214-74427233	None:intergenic	30.0%
GAAATTGTTGCAGAAGTTAA+TGG	-	chr7_1:74427352-74427371	None:intergenic	30.0%
AGTTGACAGTAGTATAAGTA+TGG	-	chr7_1:74427572-74427591	None:intergenic	30.0%
AATCCAGTGAAGAGAAATAT+GGG	+	chr7_1:74427939-74427958	Msa1037710:intron	30.0%
AAGATATCCAAATCAAGGAT+TGG	-	chr7_1:74428048-74428067	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	74426749	74428131	74426749	ID=Msa1037710;Name=Msa1037710
chr7_1	mRNA	74426749	74428131	74426749	ID=Msa1037710-mRNA-1;Parent=Msa1037710;Name=Msa1037710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|1\|0\|0\|2\|0\|186
chr7_1	exon	74426749	74427162	74426749	ID=Msa1037710-mRNA-1:exon:18755;Parent=Msa1037710-mRNA-1
chr7_1	exon	74427985	74428131	74427985	ID=Msa1037710-mRNA-1:exon:18756;Parent=Msa1037710-mRNA-1
chr7_1	CDS	74426749	74427162	74426749	ID=Msa1037710-mRNA-1:cds;Parent=Msa1037710-mRNA-1
chr7_1	CDS	74427985	74428131	74427985	ID=Msa1037710-mRNA-1:cds;Parent=Msa1037710-mRNA-1

Gene Sequence

>Msa1037710

TGCCTAGCAACAAAGCAGGTTCAAAGGTCAGATGAAGATCCAACAATAATTGAGGTAACTTACAGAGGAAGACACACATGCACTCATCCTCAAGCTAAGCCTTTAAAAAGGGAATTTCCCTCAAAGTTAAAGATAAAGGGCTTAGAGAAAAATAAACTTCACAATGATAAAAAGAATCAACTACAAACTCAAGAGACTAGTTTCACTTCCAAGGCAGAACTTGATGTTAAAAGAAATGACTTAGAAGAAACCAAAGAGGGTATTTTCCCTCGGTTTTGTTTTCCTTCTCCATCAATTGAATCAGAAAATGAGATAATGATGGAATCAAACTTTTTTGGTTTGTCAGAATATCAATTGGGCTGCAATGGATTATGCCAAAATGGACCAACTTCAGAATCTGATATCACTGATACAGTGGTGCAAACTAAAATCACCCCTGATACAGTTTCAGCTCCAACTTCAGTCACCAATTCACCAATCCTTGATTTGGATATCTTGCTTCAAAGAGGGGATTTTGACACTGATTTCCCTCTCAATACTCCTGAATATTTCTCTTCATAA

Protein sequence

>Msa1037710

CLATKQVQRSDEDPTIIEVTYRGRHTCTHPQAKPLKREFPSKLKIKGLEKNKLHNDKKNQLQTQETSFTSKAELDVKRNDLEETKEGIFPRFCFPSPSIESENEIMMESNFFGLSEYQLGCNGLCQNGPTSESDITDTVVQTKITPDTVSAPTSVTNSPILDLDILLQRGDFDTDFPLNTPEYFSS*