Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037710 | XP_003626559.1 | 87.234 | 188 | 12 | 2 | 1 | 186 | 151 | 328 | 4.69e-108 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037710 | G7L427 | 87.234 | 188 | 12 | 2 | 1 | 186 | 151 | 328 | 2.24e-108 | 322 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1037710 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040580 | Msa1037710 | 0.820163 | 7.928931e-53 | -8.615850e-47 |
| Msa0051200 | Msa1037710 | 0.806101 | 9.686293e-50 | -8.615850e-47 |
| Msa0051460 | Msa1037710 | 0.810458 | 1.141359e-50 | -8.615850e-47 |
| Msa0077390 | Msa1037710 | 0.805250 | 1.461403e-49 | -8.615850e-47 |
| Msa0088550 | Msa1037710 | 0.810793 | 9.658645e-51 | -8.615850e-47 |
| Msa0101840 | Msa1037710 | 0.812592 | 3.922967e-51 | -8.615850e-47 |
| Msa0111310 | Msa1037710 | 0.806767 | 7.009784e-50 | -8.615850e-47 |
| Msa0607540 | Msa1037710 | 0.812124 | 4.965447e-51 | -8.615850e-47 |
| Msa0629890 | Msa1037710 | 0.805330 | 1.406403e-49 | -8.615850e-47 |
| Msa0638280 | Msa1037710 | 0.805083 | 1.584406e-49 | -8.615850e-47 |
| Msa0638320 | Msa1037710 | 0.801048 | 1.081854e-48 | -8.615850e-47 |
| Msa0640380 | Msa1037710 | 0.810690 | 1.016640e-50 | -8.615850e-47 |
| Msa0647830 | Msa1037710 | 0.812698 | 3.719035e-51 | -8.615850e-47 |
| Msa0650290 | Msa1037710 | 0.816059 | 6.721491e-52 | -8.615850e-47 |
| Msa0672810 | Msa1037710 | 0.834777 | 2.463117e-56 | -8.615850e-47 |
| Msa0672850 | Msa1037710 | 0.800597 | 1.337658e-48 | -8.615850e-47 |
| Msa0678820 | Msa1037710 | 0.827705 | 1.349437e-54 | -8.615850e-47 |
| Msa0690440 | Msa1037710 | 0.814319 | 1.637231e-51 | -8.615850e-47 |
| Msa0692200 | Msa1037710 | 0.807904 | 4.023813e-50 | -8.615850e-47 |
| Msa0696800 | Msa1037710 | 0.803063 | 4.167819e-49 | -8.615850e-47 |
| Msa0722930 | Msa1037710 | 0.807072 | 6.042616e-50 | -8.615850e-47 |
| Msa0723140 | Msa1037710 | 0.809286 | 2.040162e-50 | -8.615850e-47 |
| Msa0724550 | Msa1037710 | 0.835025 | 2.132643e-56 | -8.615850e-47 |
| Msa0765130 | Msa1037710 | 0.840024 | 1.115229e-57 | -8.615850e-47 |
| Msa0812760 | Msa1037710 | 0.815440 | 9.235224e-52 | -8.615850e-47 |
| Msa0135360 | Msa1037710 | 0.809759 | 1.614230e-50 | -8.615850e-47 |
| Msa0143920 | Msa1037710 | 0.824487 | 7.860429e-54 | -8.615850e-47 |
| Msa0153430 | Msa1037710 | 0.805254 | 1.458749e-49 | -8.615850e-47 |
| Msa0153440 | Msa1037710 | 0.800015 | 1.757141e-48 | -8.615850e-47 |
| Msa0178350 | Msa1037710 | 0.818558 | 1.840766e-52 | -8.615850e-47 |
| Msa0179860 | Msa1037710 | 0.817103 | 3.922812e-52 | -8.615850e-47 |
| Msa0185640 | Msa1037710 | -0.806729 | 7.141107e-50 | -8.615850e-47 |
| Msa0190640 | Msa1037710 | 0.813243 | 2.824512e-51 | -8.615850e-47 |
| Msa0232910 | Msa1037710 | 0.811333 | 7.377283e-51 | -8.615850e-47 |
| Msa0437330 | Msa1037710 | 0.830022 | 3.711265e-55 | -8.615850e-47 |
| Msa0438050 | Msa1037710 | 0.828685 | 7.834288e-55 | -8.615850e-47 |
| Msa0442850 | Msa1037710 | 0.804171 | 2.455218e-49 | -8.615850e-47 |
| Msa0986590 | Msa1037710 | 0.813967 | 1.957987e-51 | -8.615850e-47 |
| Msa1029090 | Msa1037710 | 0.807422 | 5.094036e-50 | -8.615850e-47 |
| Msa1036390 | Msa1037710 | 0.800635 | 1.313689e-48 | -8.615850e-47 |
| Msa1037710 | Msa1054410 | 0.817810 | 2.718819e-52 | -8.615850e-47 |
| Msa1037710 | Msa1055430 | 0.817269 | 3.600230e-52 | -8.615850e-47 |
| Msa1037710 | Msa1107800 | 0.851208 | 1.030453e-60 | -8.615850e-47 |
| Msa1037710 | Msa1121660 | 0.820097 | 8.212888e-53 | -8.615850e-47 |
| Msa1037710 | Msa1130350 | 0.870887 | 1.038776e-66 | -8.615850e-47 |
| Msa1037710 | Msa1130630 | 0.838978 | 2.085701e-57 | -8.615850e-47 |
| Msa1037710 | Msa1156180 | 0.812436 | 4.242791e-51 | -8.615850e-47 |
| Msa1037710 | Msa1179120 | 0.804173 | 2.453162e-49 | -8.615850e-47 |
| Msa1037710 | Msa1204980 | -0.801006 | 1.103811e-48 | -8.615850e-47 |
| Msa1037710 | Msa1249490 | 0.802451 | 5.574633e-49 | -8.615850e-47 |
| Msa1037710 | Msa1256540 | -0.807777 | 4.283562e-50 | -8.615850e-47 |
| Msa1037710 | Msa1271200 | 0.806418 | 8.308097e-50 | -8.615850e-47 |
| Msa1037710 | Msa1279850 | 0.824185 | 9.257661e-54 | -8.615850e-47 |
| Msa1037710 | Msa1279860 | 0.806280 | 8.882107e-50 | -8.615850e-47 |
| Msa1037710 | Msa1289130 | 0.803637 | 3.169952e-49 | -8.615850e-47 |
| Msa1037710 | Msa1296960 | -0.808504 | 2.997557e-50 | -8.615850e-47 |
| Msa1037710 | Msa1308480 | 0.817180 | 3.769669e-52 | -8.615850e-47 |
| Msa1037710 | Msa1308590 | 0.808111 | 3.636631e-50 | -8.615850e-47 |
| Msa1037710 | Msa1308640 | 0.813259 | 2.802011e-51 | -8.615850e-47 |
| Msa1037710 | Msa1369530 | 0.830036 | 3.681553e-55 | -8.615850e-47 |
| Msa1037710 | Msa1377070 | 0.812492 | 4.126842e-51 | -8.615850e-47 |
| Msa1037710 | Msa1427810 | 0.832880 | 7.345216e-56 | -8.615850e-47 |
| Msa1037710 | Msa1441200 | 0.873930 | 1.003839e-67 | -8.615850e-47 |
| Msa1037710 | Msa1444060 | -0.807694 | 4.459533e-50 | -8.615850e-47 |
| Msa1037710 | Msa1458550 | 0.808391 | 3.169624e-50 | -8.615850e-47 |
| Msa1037710 | Msa1461250 | -0.806610 | 7.566469e-50 | -8.615850e-47 |
| Msa0243930 | Msa1037710 | 0.806692 | 7.272211e-50 | -8.615850e-47 |
| Msa0245880 | Msa1037710 | 0.815807 | 7.648799e-52 | -8.615850e-47 |
| Msa0331920 | Msa1037710 | 0.813716 | 2.222958e-51 | -8.615850e-47 |
| Msa0342340 | Msa1037710 | -0.809838 | 1.552317e-50 | -8.615850e-47 |
| Msa0344830 | Msa1037710 | 0.836497 | 9.040554e-57 | -8.615850e-47 |
| Msa0362740 | Msa1037710 | 0.806131 | 9.546902e-50 | -8.615850e-47 |
| Msa0528970 | Msa1037710 | 0.805848 | 1.094774e-49 | -8.615850e-47 |
| Msa0540070 | Msa1037710 | 0.800589 | 1.342496e-48 | -8.615850e-47 |
| Msa0543900 | Msa1037710 | 0.816805 | 4.576608e-52 | -8.615850e-47 |
| Msa0553460 | Msa1037710 | 0.833553 | 4.991013e-56 | -8.615850e-47 |
| Msa0564510 | Msa1037710 | 0.806547 | 7.801721e-50 | -8.615850e-47 |
| Msa0567020 | Msa1037710 | 0.808080 | 3.692404e-50 | -8.615850e-47 |
| Msa0594430 | Msa1037710 | 0.819133 | 1.363148e-52 | -8.615850e-47 |
| Msa0599770 | Msa1037710 | 0.816674 | 4.895449e-52 | -8.615850e-47 |
| Msa0843280 | Msa1037710 | 0.830259 | 3.247274e-55 | -8.615850e-47 |
| Msa0883370 | Msa1037710 | 0.800143 | 1.654515e-48 | -8.615850e-47 |
| Msa0883450 | Msa1037710 | 0.800983 | 1.115764e-48 | -8.615850e-47 |
| Msa0886330 | Msa1037710 | -0.800720 | 1.262752e-48 | -8.615850e-47 |
| Msa0902980 | Msa1037710 | 0.804879 | 1.747747e-49 | -8.615850e-47 |
| Msa0935370 | Msa1037710 | 0.803772 | 2.971390e-49 | -8.615850e-47 |
| Msa0938420 | Msa1037710 | 0.808755 | 2.650030e-50 | -8.615850e-47 |
| Msa0961490 | Msa1037710 | 0.801008 | 1.102694e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037710 | MtrunA17_Chr7g0275531 | 87.234 | 188 | 12 | 2 | 1 | 186 | 151 | 328 | 4.32e-112 | 322 |
| Msa1037710 | MtrunA17_Chr8g0347251 | 39.806 | 206 | 71 | 12 | 1 | 182 | 169 | 345 | 2.69e-22 | 92.0 |
| Msa1037710 | MtrunA17_Chr8g0387981 | 33.019 | 212 | 100 | 6 | 1 | 185 | 165 | 361 | 3.33e-18 | 80.9 |
| Msa1037710 | MtrunA17_Chr3g0126391 | 89.286 | 28 | 3 | 0 | 1 | 28 | 166 | 193 | 7.14e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037710 | AT2G46400.1 | 30.769 | 182 | 94 | 8 | 1 | 176 | 137 | 292 | 1.69e-11 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTCAAAGTTAAAGATAA+AGG | 0.227041 | 7_1:+74426865 | Msa1037710:CDS |
| CTCAAGCTAAGCCTTTAAAA+AGG | 0.231958 | 7_1:+74426837 | Msa1037710:CDS |
| ATTCTGAAGTTGGTCCATTT+TGG | 0.232813 | 7_1:-74427123 | None:intergenic |
| CAATTCACCAATCCTTGATT+TGG | 0.271018 | 7_1:+74428038 | Msa1037710:CDS |
| CCGAGGGAAAATACCCTCTT+TGG | 0.291656 | 7_1:-74426999 | None:intergenic |
| CAAATCAAGGATTGGTGAAT+TGG | 0.310097 | 7_1:-74428037 | None:intergenic |
| CCCTCAAAGTTAAAGATAAA+GGG | 0.333691 | 7_1:+74426866 | Msa1037710:CDS |
| CCCTTTATCTTTAACTTTGA+GGG | 0.337711 | 7_1:-74426866 | None:intergenic |
| GTTGGAGCTGAAACTGTATC+AGG | 0.347602 | 7_1:-74428006 | None:intergenic |
| GCCCTTTATCTTTAACTTTG+AGG | 0.367772 | 7_1:-74426867 | None:intergenic |
| TTTGAACCTGCTTTGTTGCT+AGG | 0.370195 | 7_1:-74426751 | None:intergenic |
| TAAGTTACCTCAATTATTGT+TGG | 0.376442 | 7_1:-74426788 | None:intergenic |
| TGCAATGGATTATGCCAAAA+TGG | 0.376964 | 7_1:+74427109 | Msa1037710:CDS |
| TGGTTTGTCAGAATATCAAT+TGG | 0.434536 | 7_1:+74427084 | Msa1037710:CDS |
| GTGATATCAGATTCTGAAGT+TGG | 0.434696 | 7_1:-74427133 | None:intergenic |
| GAAGCAAGATATCCAAATCA+AGG | 0.449238 | 7_1:-74428050 | None:intergenic |
| TTTAACATCAAGTTCTGCCT+TGG | 0.466903 | 7_1:-74426957 | None:intergenic |
| GGTGAATTGGTGACTGAAGT+TGG | 0.470985 | 7_1:-74428024 | None:intergenic |
| GGTTTGTCAGAATATCAATT+GGG | 0.483451 | 7_1:+74427085 | Msa1037710:CDS |
| TCTGATTCAATTGATGGAGA+AGG | 0.500124 | 7_1:-74427031 | None:intergenic |
| GAATATCAATTGGGCTGCAA+TGG | 0.511266 | 7_1:+74427094 | Msa1037710:CDS |
| ATCAGAAAATGAGATAATGA+TGG | 0.516212 | 7_1:+74427048 | Msa1037710:CDS |
| AAGATATCCAAATCAAGGAT+TGG | 0.520860 | 7_1:-74428045 | None:intergenic |
| TGGATATCTTGCTTCAAAGA+GGG | 0.528389 | 7_1:+74428058 | Msa1037710:CDS |
| TGAAGATCCAACAATAATTG+AGG | 0.540253 | 7_1:+74426781 | Msa1037710:CDS |
| AGAGACTAGTTTCACTTCCA+AGG | 0.541625 | 7_1:+74426940 | Msa1037710:CDS |
| GGATATCTTGCTTCAAAGAG+GGG | 0.560641 | 7_1:+74428059 | Msa1037710:CDS |
| TAGCAACAAAGCAGGTTCAA+AGG | 0.565187 | 7_1:+74426753 | Msa1037710:CDS |
| AAATATTCAGGAGTATTGAG+AGG | 0.566440 | 7_1:-74428099 | None:intergenic |
| TTGGATATCTTGCTTCAAAG+AGG | 0.575611 | 7_1:+74428057 | Msa1037710:CDS |
| AATATTCAGGAGTATTGAGA+GGG | 0.594267 | 7_1:-74428098 | None:intergenic |
| TTGGAGCTGAAACTGTATCA+GGG | 0.602707 | 7_1:-74428005 | None:intergenic |
| GAGAAGGAAAACAAAACCGA+GGG | 0.610739 | 7_1:-74427015 | None:intergenic |
| AGGGTGCCTAGCAACAAAGC+AGG | 0.623925 | 7_1:+74426745 | None:intergenic |
| TGGAGCTGAAACTGTATCAG+GGG | 0.653953 | 7_1:-74428004 | None:intergenic |
| ATAATTGAGGTAACTTACAG+AGG | 0.655185 | 7_1:+74426794 | Msa1037710:CDS |
| GACTTAGAAGAAACCAAAGA+GGG | 0.656480 | 7_1:+74426986 | Msa1037710:CDS |
| GGAGAAGGAAAACAAAACCG+AGG | 0.666774 | 7_1:-74427016 | None:intergenic |
| TGACTTAGAAGAAACCAAAG+AGG | 0.672282 | 7_1:+74426985 | Msa1037710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTCTTAATATAATTAC+AGG | + | chr7_1:74427701-74427720 | Msa1037710:intron | 10.0% |
| !! | AAAATTCTTAATATAATTAC+AGG | + | chr7_1:74427701-74427720 | Msa1037710:intron | 10.0% |
| !!! | TTTCTAGATATTTATTTCTT+TGG | + | chr7_1:74427386-74427405 | Msa1037710:intron | 15.0% |
| !! | TAAAAAAAAAAAAAAACTGC+AGG | + | chr7_1:74427450-74427469 | Msa1037710:intron | 15.0% |
| !!! | AAGAATTTTTTTTCTTACAA+TGG | - | chr7_1:74427690-74427709 | None:intergenic | 15.0% |
| !!! | TTTCTAGATATTTATTTCTT+TGG | + | chr7_1:74427386-74427405 | Msa1037710:intron | 15.0% |
| !! | TAAAAAAAAAAAAAAACTGC+AGG | + | chr7_1:74427450-74427469 | Msa1037710:intron | 15.0% |
| !!! | AAGAATTTTTTTTCTTACAA+TGG | - | chr7_1:74427690-74427709 | None:intergenic | 15.0% |
| !!! | ATTTATTTCTTTGGTGAAAA+TGG | + | chr7_1:74427395-74427414 | Msa1037710:intron | 20.0% |
| !!! | ATTTTTTTTCTTACAATGGT+TGG | - | chr7_1:74427686-74427705 | None:intergenic | 20.0% |
| !!! | ATTTATTTCTTTGGTGAAAA+TGG | + | chr7_1:74427395-74427414 | Msa1037710:intron | 20.0% |
| !!! | ATTTTTTTTCTTACAATGGT+TGG | - | chr7_1:74427686-74427705 | None:intergenic | 20.0% |
| ! | TAAGTTACCTCAATTATTGT+TGG | - | chr7_1:74426791-74426810 | None:intergenic | 25.0% |
| !! | TCATTTTCTGATTCAATTGA+TGG | - | chr7_1:74427040-74427059 | None:intergenic | 25.0% |
| ! | ATCAGAAAATGAGATAATGA+TGG | + | chr7_1:74427048-74427067 | Msa1037710:CDS | 25.0% |
| !!! | ATGATGGAATCAAACTTTTT+TGG | + | chr7_1:74427064-74427083 | Msa1037710:CDS | 25.0% |
| ! | AATCTAATGGTGAGAAATAT+GGG | - | chr7_1:74427213-74427232 | None:intergenic | 25.0% |
| ! | TCTGTATTAGATGAATCTAA+TGG | - | chr7_1:74427226-74427245 | None:intergenic | 25.0% |
| ! | AAATTGTTGCAGAAGTTAAT+GGG | - | chr7_1:74427351-74427370 | None:intergenic | 25.0% |
| ! | GATTCAACACAAATATGTAT+TGG | + | chr7_1:74427608-74427627 | Msa1037710:intron | 25.0% |
| !! | ATGGATCTATTGATGATTAT+GGG | - | chr7_1:74427654-74427673 | None:intergenic | 25.0% |
| ! | TTAATATAATTACAGGTGTG+AGG | + | chr7_1:74427708-74427727 | Msa1037710:intron | 25.0% |
| ! | TAAGTTACCTCAATTATTGT+TGG | - | chr7_1:74426791-74426810 | None:intergenic | 25.0% |
| !! | TCATTTTCTGATTCAATTGA+TGG | - | chr7_1:74427040-74427059 | None:intergenic | 25.0% |
| ! | ATCAGAAAATGAGATAATGA+TGG | + | chr7_1:74427048-74427067 | Msa1037710:CDS | 25.0% |
| !!! | ATGATGGAATCAAACTTTTT+TGG | + | chr7_1:74427064-74427083 | Msa1037710:CDS | 25.0% |
| ! | AATCTAATGGTGAGAAATAT+GGG | - | chr7_1:74427213-74427232 | None:intergenic | 25.0% |
| ! | TCTGTATTAGATGAATCTAA+TGG | - | chr7_1:74427226-74427245 | None:intergenic | 25.0% |
| ! | AAATTGTTGCAGAAGTTAAT+GGG | - | chr7_1:74427351-74427370 | None:intergenic | 25.0% |
| ! | GATTCAACACAAATATGTAT+TGG | + | chr7_1:74427608-74427627 | Msa1037710:intron | 25.0% |
| !! | ATGGATCTATTGATGATTAT+GGG | - | chr7_1:74427654-74427673 | None:intergenic | 25.0% |
| ! | TTAATATAATTACAGGTGTG+AGG | + | chr7_1:74427708-74427727 | Msa1037710:intron | 25.0% |
| TGAAGATCCAACAATAATTG+AGG | + | chr7_1:74426781-74426800 | Msa1037710:CDS | 30.0% | |
| ATAATTGAGGTAACTTACAG+AGG | + | chr7_1:74426794-74426813 | Msa1037710:CDS | 30.0% | |
| ! | TCAAGCTAAGCCTTTAAAAA+GGG | + | chr7_1:74426838-74426857 | Msa1037710:CDS | 30.0% |
| TCCCTCAAAGTTAAAGATAA+AGG | + | chr7_1:74426865-74426884 | Msa1037710:CDS | 30.0% | |
| ! | CCCTTTATCTTTAACTTTGA+GGG | - | chr7_1:74426869-74426888 | None:intergenic | 30.0% |
| CCCTCAAAGTTAAAGATAAA+GGG | + | chr7_1:74426866-74426885 | Msa1037710:CDS | 30.0% | |
| ! | TGGTTTGTCAGAATATCAAT+TGG | + | chr7_1:74427084-74427103 | Msa1037710:CDS | 30.0% |
| GGTTTGTCAGAATATCAATT+GGG | + | chr7_1:74427085-74427104 | Msa1037710:CDS | 30.0% | |
| GAATCTAATGGTGAGAAATA+TGG | - | chr7_1:74427214-74427233 | None:intergenic | 30.0% | |
| GAAATTGTTGCAGAAGTTAA+TGG | - | chr7_1:74427352-74427371 | None:intergenic | 30.0% | |
| ! | CTCTTTGTGATTCTTTTATG+CGG | - | chr7_1:74427531-74427550 | None:intergenic | 30.0% |
| AGTTGACAGTAGTATAAGTA+TGG | - | chr7_1:74427572-74427591 | None:intergenic | 30.0% | |
| ! | CAAATATGTATTGGTACCTT+TGG | + | chr7_1:74427617-74427636 | Msa1037710:intron | 30.0% |
| ! | GATGGATCTATTGATGATTA+TGG | - | chr7_1:74427655-74427674 | None:intergenic | 30.0% |
| AATCCAGTGAAGAGAAATAT+GGG | + | chr7_1:74427939-74427958 | Msa1037710:intron | 30.0% | |
| AAGATATCCAAATCAAGGAT+TGG | - | chr7_1:74428048-74428067 | None:intergenic | 30.0% | |
| !! | AATATTCAGGAGTATTGAGA+GGG | - | chr7_1:74428101-74428120 | None:intergenic | 30.0% |
| !! | AAATATTCAGGAGTATTGAG+AGG | - | chr7_1:74428102-74428121 | None:intergenic | 30.0% |
| TGAAGATCCAACAATAATTG+AGG | + | chr7_1:74426781-74426800 | Msa1037710:CDS | 30.0% | |
| ATAATTGAGGTAACTTACAG+AGG | + | chr7_1:74426794-74426813 | Msa1037710:CDS | 30.0% | |
| ! | TCAAGCTAAGCCTTTAAAAA+GGG | + | chr7_1:74426838-74426857 | Msa1037710:CDS | 30.0% |
| TCCCTCAAAGTTAAAGATAA+AGG | + | chr7_1:74426865-74426884 | Msa1037710:CDS | 30.0% | |
| ! | CCCTTTATCTTTAACTTTGA+GGG | - | chr7_1:74426869-74426888 | None:intergenic | 30.0% |
| CCCTCAAAGTTAAAGATAAA+GGG | + | chr7_1:74426866-74426885 | Msa1037710:CDS | 30.0% | |
| ! | TGGTTTGTCAGAATATCAAT+TGG | + | chr7_1:74427084-74427103 | Msa1037710:CDS | 30.0% |
| GGTTTGTCAGAATATCAATT+GGG | + | chr7_1:74427085-74427104 | Msa1037710:CDS | 30.0% | |
| GAATCTAATGGTGAGAAATA+TGG | - | chr7_1:74427214-74427233 | None:intergenic | 30.0% | |
| GAAATTGTTGCAGAAGTTAA+TGG | - | chr7_1:74427352-74427371 | None:intergenic | 30.0% | |
| ! | CTCTTTGTGATTCTTTTATG+CGG | - | chr7_1:74427531-74427550 | None:intergenic | 30.0% |
| AGTTGACAGTAGTATAAGTA+TGG | - | chr7_1:74427572-74427591 | None:intergenic | 30.0% | |
| ! | CAAATATGTATTGGTACCTT+TGG | + | chr7_1:74427617-74427636 | Msa1037710:intron | 30.0% |
| ! | GATGGATCTATTGATGATTA+TGG | - | chr7_1:74427655-74427674 | None:intergenic | 30.0% |
| AATCCAGTGAAGAGAAATAT+GGG | + | chr7_1:74427939-74427958 | Msa1037710:intron | 30.0% | |
| AAGATATCCAAATCAAGGAT+TGG | - | chr7_1:74428048-74428067 | None:intergenic | 30.0% | |
| !! | AATATTCAGGAGTATTGAGA+GGG | - | chr7_1:74428101-74428120 | None:intergenic | 30.0% |
| !! | AAATATTCAGGAGTATTGAG+AGG | - | chr7_1:74428102-74428121 | None:intergenic | 30.0% |
| !! | CTTTTTAAAGGCTTAGCTTG+AGG | - | chr7_1:74426839-74426858 | None:intergenic | 35.0% |
| ! | CTCAAGCTAAGCCTTTAAAA+AGG | + | chr7_1:74426837-74426856 | Msa1037710:CDS | 35.0% |
| ! | GAGGGAAATTCCCTTTTTAA+AGG | - | chr7_1:74426851-74426870 | None:intergenic | 35.0% |
| ! | GCCCTTTATCTTTAACTTTG+AGG | - | chr7_1:74426870-74426889 | None:intergenic | 35.0% |
| TTTAACATCAAGTTCTGCCT+TGG | - | chr7_1:74426960-74426979 | None:intergenic | 35.0% | |
| TGACTTAGAAGAAACCAAAG+AGG | + | chr7_1:74426985-74427004 | Msa1037710:CDS | 35.0% | |
| GACTTAGAAGAAACCAAAGA+GGG | + | chr7_1:74426986-74427005 | Msa1037710:CDS | 35.0% | |
| TCTGATTCAATTGATGGAGA+AGG | - | chr7_1:74427034-74427053 | None:intergenic | 35.0% | |
| !! | TGCAATGGATTATGCCAAAA+TGG | + | chr7_1:74427109-74427128 | Msa1037710:CDS | 35.0% |
| !!! | ATTCTGAAGTTGGTCCATTT+TGG | - | chr7_1:74427126-74427145 | None:intergenic | 35.0% |
| !! | GTGATATCAGATTCTGAAGT+TGG | - | chr7_1:74427136-74427155 | None:intergenic | 35.0% |
| ATCTGATATCACTGATACAG+TGG | + | chr7_1:74427144-74427163 | Msa1037710:intron | 35.0% | |
| TCTGATATCACTGATACAGT+GGG | + | chr7_1:74427145-74427164 | Msa1037710:intron | 35.0% | |
| AACTTACACCACCTAAACTT+TGG | + | chr7_1:74427175-74427194 | Msa1037710:intron | 35.0% | |
| ACTTACACCACCTAAACTTT+GGG | + | chr7_1:74427176-74427195 | Msa1037710:intron | 35.0% | |
| AGAGAGAAATCATGTGTAGA+TGG | - | chr7_1:74427263-74427282 | None:intergenic | 35.0% | |
| AATTTCCAGAAATCGAAGAC+TGG | + | chr7_1:74427313-74427332 | Msa1037710:intron | 35.0% | |
| CGCATAAAAGAATCACAAAG+AGG | + | chr7_1:74427529-74427548 | Msa1037710:intron | 35.0% | |
| ATGGGTTTCATATATGCCAA+AGG | - | chr7_1:74427636-74427655 | None:intergenic | 35.0% | |
| TTGAGATGTTGTAGAGGAAA+GGG | + | chr7_1:74427866-74427885 | Msa1037710:intron | 35.0% | |
| GAATCCAGTGAAGAGAAATA+TGG | + | chr7_1:74427938-74427957 | Msa1037710:intron | 35.0% | |
| ! | CAAATCAAGGATTGGTGAAT+TGG | - | chr7_1:74428040-74428059 | None:intergenic | 35.0% |
| CAATTCACCAATCCTTGATT+TGG | + | chr7_1:74428038-74428057 | Msa1037710:CDS | 35.0% | |
| GAAGCAAGATATCCAAATCA+AGG | - | chr7_1:74428053-74428072 | None:intergenic | 35.0% | |
| TTGGATATCTTGCTTCAAAG+AGG | + | chr7_1:74428057-74428076 | Msa1037710:CDS | 35.0% | |
| TGGATATCTTGCTTCAAAGA+GGG | + | chr7_1:74428058-74428077 | Msa1037710:CDS | 35.0% | |
| !! | CTTTTTAAAGGCTTAGCTTG+AGG | - | chr7_1:74426839-74426858 | None:intergenic | 35.0% |
| ! | CTCAAGCTAAGCCTTTAAAA+AGG | + | chr7_1:74426837-74426856 | Msa1037710:CDS | 35.0% |
| ! | GAGGGAAATTCCCTTTTTAA+AGG | - | chr7_1:74426851-74426870 | None:intergenic | 35.0% |
| ! | GCCCTTTATCTTTAACTTTG+AGG | - | chr7_1:74426870-74426889 | None:intergenic | 35.0% |
| TTTAACATCAAGTTCTGCCT+TGG | - | chr7_1:74426960-74426979 | None:intergenic | 35.0% | |
| TGACTTAGAAGAAACCAAAG+AGG | + | chr7_1:74426985-74427004 | Msa1037710:CDS | 35.0% | |
| GACTTAGAAGAAACCAAAGA+GGG | + | chr7_1:74426986-74427005 | Msa1037710:CDS | 35.0% | |
| TCTGATTCAATTGATGGAGA+AGG | - | chr7_1:74427034-74427053 | None:intergenic | 35.0% | |
| !! | TGCAATGGATTATGCCAAAA+TGG | + | chr7_1:74427109-74427128 | Msa1037710:CDS | 35.0% |
| !!! | ATTCTGAAGTTGGTCCATTT+TGG | - | chr7_1:74427126-74427145 | None:intergenic | 35.0% |
| !! | GTGATATCAGATTCTGAAGT+TGG | - | chr7_1:74427136-74427155 | None:intergenic | 35.0% |
| ATCTGATATCACTGATACAG+TGG | + | chr7_1:74427144-74427163 | Msa1037710:intron | 35.0% | |
| TCTGATATCACTGATACAGT+GGG | + | chr7_1:74427145-74427164 | Msa1037710:intron | 35.0% | |
| AACTTACACCACCTAAACTT+TGG | + | chr7_1:74427175-74427194 | Msa1037710:intron | 35.0% | |
| ACTTACACCACCTAAACTTT+GGG | + | chr7_1:74427176-74427195 | Msa1037710:intron | 35.0% | |
| AGAGAGAAATCATGTGTAGA+TGG | - | chr7_1:74427263-74427282 | None:intergenic | 35.0% | |
| AATTTCCAGAAATCGAAGAC+TGG | + | chr7_1:74427313-74427332 | Msa1037710:intron | 35.0% | |
| CGCATAAAAGAATCACAAAG+AGG | + | chr7_1:74427529-74427548 | Msa1037710:intron | 35.0% | |
| ATGGGTTTCATATATGCCAA+AGG | - | chr7_1:74427636-74427655 | None:intergenic | 35.0% | |
| TTGAGATGTTGTAGAGGAAA+GGG | + | chr7_1:74427866-74427885 | Msa1037710:intron | 35.0% | |
| GAATCCAGTGAAGAGAAATA+TGG | + | chr7_1:74427938-74427957 | Msa1037710:intron | 35.0% | |
| ! | CAAATCAAGGATTGGTGAAT+TGG | - | chr7_1:74428040-74428059 | None:intergenic | 35.0% |
| CAATTCACCAATCCTTGATT+TGG | + | chr7_1:74428038-74428057 | Msa1037710:CDS | 35.0% | |
| GAAGCAAGATATCCAAATCA+AGG | - | chr7_1:74428053-74428072 | None:intergenic | 35.0% | |
| TTGGATATCTTGCTTCAAAG+AGG | + | chr7_1:74428057-74428076 | Msa1037710:CDS | 35.0% | |
| TGGATATCTTGCTTCAAAGA+GGG | + | chr7_1:74428058-74428077 | Msa1037710:CDS | 35.0% | |
| ! | TTTGAACCTGCTTTGTTGCT+AGG | - | chr7_1:74426754-74426773 | None:intergenic | 40.0% |
| TAGCAACAAAGCAGGTTCAA+AGG | + | chr7_1:74426753-74426772 | Msa1037710:CDS | 40.0% | |
| !! | AGAGACTAGTTTCACTTCCA+AGG | + | chr7_1:74426940-74426959 | Msa1037710:CDS | 40.0% |
| GAGAAGGAAAACAAAACCGA+GGG | - | chr7_1:74427018-74427037 | None:intergenic | 40.0% | |
| GAATATCAATTGGGCTGCAA+TGG | + | chr7_1:74427094-74427113 | Msa1037710:CDS | 40.0% | |
| TGAGAAATATGGGTCCAAGT+TGG | - | chr7_1:74427203-74427222 | None:intergenic | 40.0% | |
| AAGATCCAGTCTTCGATTTC+TGG | - | chr7_1:74427321-74427340 | None:intergenic | 40.0% | |
| !! | CAATGGTTGGTAGATCATGA+TGG | - | chr7_1:74427673-74427692 | None:intergenic | 40.0% |
| GAGGTAAAGTTGAAGCAAGA+AGG | + | chr7_1:74427727-74427746 | Msa1037710:intron | 40.0% | |
| TTGAAGCAAGAAGGTTGAAG+AGG | + | chr7_1:74427736-74427755 | Msa1037710:intron | 40.0% | |
| TGAAGCAAGAAGGTTGAAGA+GGG | + | chr7_1:74427737-74427756 | Msa1037710:intron | 40.0% | |
| AAGGTTGAAGAGGGAAAGTA+AGG | + | chr7_1:74427746-74427765 | Msa1037710:intron | 40.0% | |
| ACACAATCTCCACTGCAAAA+AGG | - | chr7_1:74427775-74427794 | None:intergenic | 40.0% | |
| TTGTGTTTCGCTTCCAATAG+TGG | + | chr7_1:74427789-74427808 | Msa1037710:intron | 40.0% | |
| GTGAAGTTGAGATGTTGTAG+AGG | + | chr7_1:74427860-74427879 | Msa1037710:intron | 40.0% | |
| GTTGAGATGTTGTAGAGGAA+AGG | + | chr7_1:74427865-74427884 | Msa1037710:intron | 40.0% | |
| AAGGGAGAAACAATCAACTG+CGG | + | chr7_1:74427884-74427903 | Msa1037710:intron | 40.0% | |
| !! | GGGAGTATCATAGAATAGTG+AGG | + | chr7_1:74427908-74427927 | Msa1037710:intron | 40.0% |
| AGAGAAATATGGGTCCAAGT+TGG | + | chr7_1:74427949-74427968 | Msa1037710:intron | 40.0% | |
| GTTTGCACCACCTAAACTTT+GGG | - | chr7_1:74427976-74427995 | None:intergenic | 40.0% | |
| AGTTTGCACCACCTAAACTT+TGG | - | chr7_1:74427977-74427996 | None:intergenic | 40.0% | |
| TTGGAGCTGAAACTGTATCA+GGG | - | chr7_1:74428008-74428027 | None:intergenic | 40.0% | |
| GGATATCTTGCTTCAAAGAG+GGG | + | chr7_1:74428059-74428078 | Msa1037710:CDS | 40.0% | |
| ! | TTTGAACCTGCTTTGTTGCT+AGG | - | chr7_1:74426754-74426773 | None:intergenic | 40.0% |
| TAGCAACAAAGCAGGTTCAA+AGG | + | chr7_1:74426753-74426772 | Msa1037710:CDS | 40.0% | |
| !! | AGAGACTAGTTTCACTTCCA+AGG | + | chr7_1:74426940-74426959 | Msa1037710:CDS | 40.0% |
| GAGAAGGAAAACAAAACCGA+GGG | - | chr7_1:74427018-74427037 | None:intergenic | 40.0% | |
| GAATATCAATTGGGCTGCAA+TGG | + | chr7_1:74427094-74427113 | Msa1037710:CDS | 40.0% | |
| TGAGAAATATGGGTCCAAGT+TGG | - | chr7_1:74427203-74427222 | None:intergenic | 40.0% | |
| AAGATCCAGTCTTCGATTTC+TGG | - | chr7_1:74427321-74427340 | None:intergenic | 40.0% | |
| !! | CAATGGTTGGTAGATCATGA+TGG | - | chr7_1:74427673-74427692 | None:intergenic | 40.0% |
| GAGGTAAAGTTGAAGCAAGA+AGG | + | chr7_1:74427727-74427746 | Msa1037710:intron | 40.0% | |
| TTGAAGCAAGAAGGTTGAAG+AGG | + | chr7_1:74427736-74427755 | Msa1037710:intron | 40.0% | |
| TGAAGCAAGAAGGTTGAAGA+GGG | + | chr7_1:74427737-74427756 | Msa1037710:intron | 40.0% | |
| AAGGTTGAAGAGGGAAAGTA+AGG | + | chr7_1:74427746-74427765 | Msa1037710:intron | 40.0% | |
| ACACAATCTCCACTGCAAAA+AGG | - | chr7_1:74427775-74427794 | None:intergenic | 40.0% | |
| TTGTGTTTCGCTTCCAATAG+TGG | + | chr7_1:74427789-74427808 | Msa1037710:intron | 40.0% | |
| GTGAAGTTGAGATGTTGTAG+AGG | + | chr7_1:74427860-74427879 | Msa1037710:intron | 40.0% | |
| GTTGAGATGTTGTAGAGGAA+AGG | + | chr7_1:74427865-74427884 | Msa1037710:intron | 40.0% | |
| AAGGGAGAAACAATCAACTG+CGG | + | chr7_1:74427884-74427903 | Msa1037710:intron | 40.0% | |
| !! | GGGAGTATCATAGAATAGTG+AGG | + | chr7_1:74427908-74427927 | Msa1037710:intron | 40.0% |
| AGAGAAATATGGGTCCAAGT+TGG | + | chr7_1:74427949-74427968 | Msa1037710:intron | 40.0% | |
| GTTTGCACCACCTAAACTTT+GGG | - | chr7_1:74427976-74427995 | None:intergenic | 40.0% | |
| AGTTTGCACCACCTAAACTT+TGG | - | chr7_1:74427977-74427996 | None:intergenic | 40.0% | |
| TTGGAGCTGAAACTGTATCA+GGG | - | chr7_1:74428008-74428027 | None:intergenic | 40.0% | |
| GGATATCTTGCTTCAAAGAG+GGG | + | chr7_1:74428059-74428078 | Msa1037710:CDS | 40.0% | |
| !!! | CCAAAGAGGGTATTTTCCCT+CGG | + | chr7_1:74426999-74427018 | Msa1037710:CDS | 45.0% |
| GGAGAAGGAAAACAAAACCG+AGG | - | chr7_1:74427019-74427038 | None:intergenic | 45.0% | |
| AGTTGGACCCAAAGTTTAGG+TGG | - | chr7_1:74427966-74427985 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGACCCAAAGTTT+AGG | - | chr7_1:74427963-74427982 | None:intergenic | 45.0% |
| CCTAAACTTTGGGTCCAACT+TGG | + | chr7_1:74427186-74427205 | Msa1037710:intron | 45.0% | |
| ! | GTAAGGAAGCCTTTTTGCAG+TGG | + | chr7_1:74427763-74427782 | Msa1037710:intron | 45.0% |
| TGTTTCGCTTCCAATAGTGG+TGG | + | chr7_1:74427792-74427811 | Msa1037710:intron | 45.0% | |
| CAGAGTAGGGTTGAGAAAGA+AGG | + | chr7_1:74427831-74427850 | Msa1037710:intron | 45.0% | |
| GAGAAACAATCAACTGCGGA+GGG | + | chr7_1:74427888-74427907 | Msa1037710:intron | 45.0% | |
| GGACCCATATTTCTCTTCAC+TGG | - | chr7_1:74427945-74427964 | None:intergenic | 45.0% | |
| CCTAAACTTTGGGTCCAACT+TGG | - | chr7_1:74427186-74427205 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGACCCAAAGTTT+AGG | + | chr7_1:74427963-74427982 | Msa1037710:intron | 45.0% |
| AGTTGGACCCAAAGTTTAGG+TGG | + | chr7_1:74427966-74427985 | Msa1037710:intron | 45.0% | |
| TGGAGCTGAAACTGTATCAG+GGG | - | chr7_1:74428007-74428026 | None:intergenic | 45.0% | |
| GTTGGAGCTGAAACTGTATC+AGG | - | chr7_1:74428009-74428028 | None:intergenic | 45.0% | |
| ! | GGTGAATTGGTGACTGAAGT+TGG | - | chr7_1:74428027-74428046 | None:intergenic | 45.0% |
| !!! | CCAAAGAGGGTATTTTCCCT+CGG | + | chr7_1:74426999-74427018 | Msa1037710:CDS | 45.0% |
| GGAGAAGGAAAACAAAACCG+AGG | - | chr7_1:74427019-74427038 | None:intergenic | 45.0% | |
| AGTTGGACCCAAAGTTTAGG+TGG | - | chr7_1:74427966-74427985 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGACCCAAAGTTT+AGG | - | chr7_1:74427963-74427982 | None:intergenic | 45.0% |
| CCTAAACTTTGGGTCCAACT+TGG | + | chr7_1:74427186-74427205 | Msa1037710:intron | 45.0% | |
| ! | GTAAGGAAGCCTTTTTGCAG+TGG | + | chr7_1:74427763-74427782 | Msa1037710:intron | 45.0% |
| TGTTTCGCTTCCAATAGTGG+TGG | + | chr7_1:74427792-74427811 | Msa1037710:intron | 45.0% | |
| CAGAGTAGGGTTGAGAAAGA+AGG | + | chr7_1:74427831-74427850 | Msa1037710:intron | 45.0% | |
| GAGAAACAATCAACTGCGGA+GGG | + | chr7_1:74427888-74427907 | Msa1037710:intron | 45.0% | |
| GGACCCATATTTCTCTTCAC+TGG | - | chr7_1:74427945-74427964 | None:intergenic | 45.0% | |
| CCTAAACTTTGGGTCCAACT+TGG | - | chr7_1:74427186-74427205 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGACCCAAAGTTT+AGG | + | chr7_1:74427963-74427982 | Msa1037710:intron | 45.0% |
| AGTTGGACCCAAAGTTTAGG+TGG | + | chr7_1:74427966-74427985 | Msa1037710:intron | 45.0% | |
| TGGAGCTGAAACTGTATCAG+GGG | - | chr7_1:74428007-74428026 | None:intergenic | 45.0% | |
| GTTGGAGCTGAAACTGTATC+AGG | - | chr7_1:74428009-74428028 | None:intergenic | 45.0% | |
| ! | GGTGAATTGGTGACTGAAGT+TGG | - | chr7_1:74428027-74428046 | None:intergenic | 45.0% |
| CCGAGGGAAAATACCCTCTT+TGG | - | chr7_1:74427002-74427021 | None:intergenic | 50.0% | |
| TCGCTTCCAATAGTGGTGGT+CGG | + | chr7_1:74427796-74427815 | Msa1037710:intron | 50.0% | |
| TGAGTTCCGACCACCACTAT+TGG | - | chr7_1:74427805-74427824 | None:intergenic | 50.0% | |
| GGAGAAACAATCAACTGCGG+AGG | + | chr7_1:74427887-74427906 | Msa1037710:intron | 50.0% | |
| CCGAGGGAAAATACCCTCTT+TGG | - | chr7_1:74427002-74427021 | None:intergenic | 50.0% | |
| TCGCTTCCAATAGTGGTGGT+CGG | + | chr7_1:74427796-74427815 | Msa1037710:intron | 50.0% | |
| TGAGTTCCGACCACCACTAT+TGG | - | chr7_1:74427805-74427824 | None:intergenic | 50.0% | |
| GGAGAAACAATCAACTGCGG+AGG | + | chr7_1:74427887-74427906 | Msa1037710:intron | 50.0% | |
| GAACTCAACGCGGCAGAGTA+GGG | + | chr7_1:74427818-74427837 | Msa1037710:intron | 55.0% | |
| GAACTCAACGCGGCAGAGTA+GGG | + | chr7_1:74427818-74427837 | Msa1037710:intron | 55.0% | |
| GTGGTGGTCGGAACTCAACG+CGG | + | chr7_1:74427808-74427827 | Msa1037710:intron | 60.0% | |
| GGAACTCAACGCGGCAGAGT+AGG | + | chr7_1:74427817-74427836 | Msa1037710:intron | 60.0% | |
| GTGGTGGTCGGAACTCAACG+CGG | + | chr7_1:74427808-74427827 | Msa1037710:intron | 60.0% | |
| GGAACTCAACGCGGCAGAGT+AGG | + | chr7_1:74427817-74427836 | Msa1037710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 74426749 | 74428131 | 74426749 | ID=Msa1037710;Name=Msa1037710 |
| chr7_1 | mRNA | 74426749 | 74428131 | 74426749 | ID=Msa1037710-mRNA-1;Parent=Msa1037710;Name=Msa1037710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|2|0|186 |
| chr7_1 | exon | 74426749 | 74427162 | 74426749 | ID=Msa1037710-mRNA-1:exon:18755;Parent=Msa1037710-mRNA-1 |
| chr7_1 | exon | 74427985 | 74428131 | 74427985 | ID=Msa1037710-mRNA-1:exon:18756;Parent=Msa1037710-mRNA-1 |
| chr7_1 | CDS | 74426749 | 74427162 | 74426749 | ID=Msa1037710-mRNA-1:cds;Parent=Msa1037710-mRNA-1 |
| chr7_1 | CDS | 74427985 | 74428131 | 74427985 | ID=Msa1037710-mRNA-1:cds;Parent=Msa1037710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
