AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413840 MtrunA17_Chr3g0134861 98.639 441 6 0 1 441 1 441 0.0 910
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413840 AT1G27840.1 65.479 449 144 2 4 441 2 450 0.0 634
Msa1413840 AT1G27840.3 65.333 450 144 3 4 441 2 451 0.0 629
Msa1413840 AT1G19750.1 65.854 451 139 4 4 441 2 450 0.0 624
Msa1413840 AT1G27840.2 56.347 449 128 4 4 441 2 393 5.16e-180 508
Msa1413840 AT1G19750.2 65.672 335 100 4 120 441 1 333 4.05e-158 450
Msa1413840 AT2G16780.1 28.421 190 115 7 60 245 183 355 4.56e-11 64.7
Msa1413840 AT5G23430.1 27.481 131 92 2 99 229 10 137 7.10e-11 65.1
Msa1413840 AT5G23430.3 27.481 131 92 2 99 229 10 137 7.23e-11 65.1
Msa1413840 AT5G23430.2 27.481 131 92 2 99 229 10 137 7.23e-11 65.1

Find 122 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCGATTAGCGAAGGAATT+TGG 0.195129 tig0024068:-63469 None:intergenic
ATGCTGTATCTTCAGCTATT+TGG 0.204367 tig0024068:+63737 Msa1413840:CDS
CTACATCTACTAGATGAAAA+AGG 0.224652 tig0024068:-69214 None:intergenic
TGTTTCATCCACTTCGTAAT+TGG 0.240425 tig0024068:-63236 None:intergenic
CTGCACACCAATTATAAATT+AGG 0.259803 tig0024068:-69056 None:intergenic
ATTCAAAGATGCTCCGAATA+TGG 0.262037 tig0024068:+63402 Msa1413840:exon
AATAAGGTTTGTTCTGGTTT+TGG 0.263552 tig0024068:+69109 Msa1413840:three_prime_UTR
CAGCATATTTATGAGCTAAT+TGG 0.265136 tig0024068:-63720 None:intergenic
TTTGAGTCCACTTGAGTTCC+AGG 0.269395 tig0024068:+63265 Msa1413840:five_prime_UTR
ATGATCATCATGTTAATGTT+TGG 0.280560 tig0024068:+63797 Msa1413840:CDS
ATGTGTATACAACCTTAATT+TGG 0.284405 tig0024068:-69316 None:intergenic
AACTGGCAGGCTATCATCTA+AGG 0.289330 tig0024068:+65397 Msa1413840:CDS
CGTCTTTGTGATATTGCTTC+TGG 0.295957 tig0024068:+64278 Msa1413840:CDS
GTTTGTGGGATGTGTAAATA+AGG 0.300439 tig0024068:+69093 Msa1413840:three_prime_UTR
GGATGTAATTTCTGCTTCAT+TGG 0.303704 tig0024068:-65422 None:intergenic
TGTGTAAATAAGGTTTGTTC+TGG 0.317866 tig0024068:+69103 Msa1413840:three_prime_UTR
TGATCATCATGTTAATGTTT+GGG 0.326481 tig0024068:+63798 Msa1413840:CDS
TTCTTCCACGTATCCATATT+CGG 0.329237 tig0024068:-63415 None:intergenic
TCTTCTTCCTCCTTCACTCC+TGG 0.331611 tig0024068:-63283 None:intergenic
GCAGTCTTATACACCTTTCC+AGG 0.331614 tig0024068:-64194 None:intergenic
ACAAAGGTTGTTGCTATATC+TGG 0.335545 tig0024068:-63348 None:intergenic
ATTTGGTATCCCATTGATAC+TGG 0.339602 tig0024068:+63754 Msa1413840:CDS
TCATCGGCAATTGACCTTGC+AGG 0.342730 tig0024068:-68866 None:intergenic
AGTGAATGGGTCTTGATTAC+CGG 0.350685 tig0024068:+65055 Msa1413840:CDS
GCATTTGCTCATACTTTGTC+TGG 0.353584 tig0024068:+64302 Msa1413840:CDS
GATCGTGCAACTGCTCATTA+TGG 0.366149 tig0024068:+65464 Msa1413840:CDS
TCTGAGATTGATTTAAAACT+TGG 0.377456 tig0024068:-65129 None:intergenic
CAGGCATTTGATATGTGGTC+TGG 0.378935 tig0024068:+67718 Msa1413840:intron
TGAGTTGTAGCTAATTGAAT+AGG 0.379923 tig0024068:-67415 None:intergenic
TCCTGAGTAGAAATCATTCC+TGG 0.383793 tig0024068:-65443 None:intergenic
GGAACTCAAGTGGACTCAAA+TGG 0.416316 tig0024068:-63262 None:intergenic
GATGAATAAACCAGTATCAA+TGG 0.420168 tig0024068:-63764 None:intergenic
CATCTAGTAGATGTAGACTT+TGG 0.421561 tig0024068:+69221 Msa1413840:three_prime_UTR
CTTCTGTTAAATCAATTTGA+AGG 0.421628 tig0024068:-63570 None:intergenic
CTCAGTTACTCCAGCTATCC+TGG 0.425023 tig0024068:-69003 None:intergenic
TTGGCAACTTTCTTCTGTCC+AGG 0.433328 tig0024068:-65350 None:intergenic
AACATCAAAGACAGAGAATC+CGG 0.439433 tig0024068:+63436 Msa1413840:CDS
CTGATTCAAGATTGAGATTG+TGG 0.440434 tig0024068:+67329 Msa1413840:CDS
CAAACGTTCCGTGCTAACTA+AGG 0.443106 tig0024068:+65180 Msa1413840:CDS
GAAGAAGACGACGACGACTT+TGG 0.446834 tig0024068:+63301 Msa1413840:five_prime_UTR
ATCCCGACGACCAGGATAGC+TGG 0.447196 tig0024068:+68993 Msa1413840:CDS
AATGGTCTGCTTCAAGTGAA+TGG 0.451347 tig0024068:+65041 Msa1413840:CDS
GATACTGGTTTATTCATCAC+TGG 0.452740 tig0024068:+63769 Msa1413840:CDS
GGCAGTGGACATCTGCCAAC+TGG 0.453300 tig0024068:+65380 Msa1413840:CDS
CTGGTTTAATCAACAAGATC+AGG 0.457234 tig0024068:+67789 Msa1413840:CDS
TTATTCAGGCATTTGATATG+TGG 0.464525 tig0024068:+67713 Msa1413840:intron
CTCCAGCTATCCTGGTCGTC+GGG 0.468697 tig0024068:-68995 None:intergenic
TAGCGGTTTACGACGTTCAC+CGG 0.471610 tig0024068:+63629 Msa1413840:CDS
ACGATAGACAAATTCTTGTA+TGG 0.472177 tig0024068:+68840 Msa1413840:CDS
ATGAATAAACCAGTATCAAT+GGG 0.473954 tig0024068:-63763 None:intergenic
GAACTCAAGTGGACTCAAAT+GGG 0.479222 tig0024068:-63261 None:intergenic
CTTCAAATTGATTTAACAGA+AGG 0.481429 tig0024068:+63571 Msa1413840:CDS
CTCCGTCGAAATCGCTCGGC+CGG 0.482142 tig0024068:-63648 None:intergenic
TTCTGTTAAATCAATTTGAA+GGG 0.489653 tig0024068:-63569 None:intergenic
AAGAAAGTTGCCAATGGAAG+TGG 0.491768 tig0024068:+65359 Msa1413840:CDS
TCTCATACGCTTATTGCTGC+TGG 0.491892 tig0024068:+64236 Msa1413840:CDS
GTTGCCAATGGAAGTGGCAG+TGG 0.492604 tig0024068:+65365 Msa1413840:CDS
CAAAGAGTGCACCATTTCAT+CGG 0.496860 tig0024068:-68882 None:intergenic
GACGACGACGACTTTGGTTG+TGG 0.498634 tig0024068:+63307 Msa1413840:five_prime_UTR
AATCAATCTCAGACGCAGCT+TGG 0.504418 tig0024068:+65139 Msa1413840:CDS
CCGAGCGATTTCGACGGAGA+TGG 0.504812 tig0024068:+63652 Msa1413840:CDS
GCTCATTATGGTGCTGTGAC+AGG 0.504885 tig0024068:+65476 Msa1413840:CDS
AATTAATTGCGCCTTTGTGA+GGG 0.509005 tig0024068:-63546 None:intergenic
CGAAGGAGATCCCGACGACC+AGG 0.513845 tig0024068:+68985 Msa1413840:CDS
ATGGTCTGCTTCAAGTGAAT+GGG 0.514760 tig0024068:+65042 Msa1413840:CDS
AGGCATTTGATATGTGGTCT+GGG 0.514949 tig0024068:+67719 Msa1413840:intron
AGATTGTGGGATGTTGAGTC+AGG 0.515425 tig0024068:+67343 Msa1413840:CDS
GTGGTGAATTTCAAAATGCC+TGG 0.516745 tig0024068:+64176 Msa1413840:CDS
AATATGTGAAACACAAATGA+AGG 0.518798 tig0024068:-69031 None:intergenic
ATTCTACCTACAAAAGCAAT+GGG 0.521916 tig0024068:-69183 None:intergenic
AAGGTCAATTGCCGATGAAA+TGG 0.525899 tig0024068:+68871 Msa1413840:CDS
GTGGACATCTGCCAACTGGC+AGG 0.526487 tig0024068:+65384 Msa1413840:CDS
GAATTAATTGCGCCTTTGTG+AGG 0.526750 tig0024068:-63547 None:intergenic
ATCTTGTTGATTAAACCAGC+AGG 0.528118 tig0024068:-67785 None:intergenic
CACTTGAGTTCCAGGAGTGA+AGG 0.532137 tig0024068:+63273 Msa1413840:five_prime_UTR
AATTCTACCTACAAAAGCAA+TGG 0.533055 tig0024068:-69184 None:intergenic
TCCAGGAATGATTTCTACTC+AGG 0.535159 tig0024068:+65442 Msa1413840:CDS
ATGAATCTATAAACTCCTGC+TGG 0.535705 tig0024068:+67770 Msa1413840:CDS
ATGTCCACTGCCACTTCCAT+TGG 0.540411 tig0024068:-65369 None:intergenic
GTGAATGGGTCTTGATTACC+GGG 0.543515 tig0024068:+65056 Msa1413840:CDS
TCAATTTCAATGAGTAACAA+AGG 0.543759 tig0024068:-63364 None:intergenic
ACTTTCACAACCCTCATGCA+TGG 0.546812 tig0024068:-67460 None:intergenic
GGCATGTATCTCTTAAGTGC+AGG 0.549168 tig0024068:+65518 Msa1413840:CDS
AGCACGGAACGTTTGAGTAG+AGG 0.550967 tig0024068:-65172 None:intergenic
TCTGGTGAGTGGTGATACTA+CGG 0.566490 tig0024068:-63330 None:intergenic
ACTCCAGCTATCCTGGTCGT+CGG 0.569326 tig0024068:-68996 None:intergenic
TTCTTGTATGGTCACCTGCA+AGG 0.573554 tig0024068:+68852 Msa1413840:CDS
TGATTCAAGATTGAGATTGT+GGG 0.573902 tig0024068:+67330 Msa1413840:CDS
TTGAGTTCCAGGAGTGAAGG+AGG 0.574002 tig0024068:+63276 Msa1413840:five_prime_UTR
TAGGTTTGCTTGTTTGCAAG+CGG 0.575957 tig0024068:-67396 None:intergenic
CCATCTCCGTCGAAATCGCT+CGG 0.578915 tig0024068:-63652 None:intergenic
CTTCACTCCTGGAACTCAAG+TGG 0.579327 tig0024068:-63272 None:intergenic
TGTGATAAACTGCAGGGCGA+AGG 0.586427 tig0024068:+68968 Msa1413840:intron
ATGAAGCAGAAATTACATCC+AGG 0.589532 tig0024068:+65425 Msa1413840:CDS
ACGGAACGTTTGAGTAGAGG+TGG 0.594941 tig0024068:-65169 None:intergenic
GGAGCAGATGTGAAACACAT+AGG 0.595373 tig0024068:+69130 Msa1413840:three_prime_UTR
TTGCCACAGGAGTTGTACAC+AGG 0.597998 tig0024068:+68812 Msa1413840:intron
GGATTGAAAGTAACAGAGGA+TGG 0.605564 tig0024068:+65497 Msa1413840:CDS
GCTTATTGCTGCTGGAACTG+AGG 0.609754 tig0024068:+64244 Msa1413840:CDS
ATTAATTGCGCCTTTGTGAG+GGG 0.611011 tig0024068:-63545 None:intergenic
GGACAGAAGAAAGTTGCCAA+TGG 0.611679 tig0024068:+65353 Msa1413840:CDS
ATGGTGTAATGACTGTTGAA+TGG 0.628070 tig0024068:+65023 Msa1413840:CDS
ACTGGCAGGCTATCATCTAA+GGG 0.630654 tig0024068:+65398 Msa1413840:CDS
CACCGGCCGAGCGATTTCGA+CGG 0.632724 tig0024068:+63646 Msa1413840:CDS
GTGAACGTCGTAAACCGCTA+CGG 0.633953 tig0024068:-63626 None:intergenic
CCACAGGAGTTGTACACAGG+TGG 0.635650 tig0024068:+68815 Msa1413840:intron
GAATTTCAAAATGCCTGGAA+AGG 0.640053 tig0024068:+64181 Msa1413840:CDS
TTAGATGATAGCCTGCCAGT+TGG 0.643193 tig0024068:-65395 None:intergenic
GAATGGGTCTTGATTACCGG+GGG 0.646184 tig0024068:+65058 Msa1413840:CDS
ATAGAAGTCCAATTACGAAG+TGG 0.655134 tig0024068:+63228 Msa1413840:five_prime_UTR
TTGGGACACTAACACCACTC+AGG 0.656420 tig0024068:+63816 Msa1413840:CDS
CATACTTTGTCTGGTCATCG+TGG 0.668716 tig0024068:+64311 Msa1413840:CDS
CGGAACGTTTGAGTAGAGGT+GGG 0.672074 tig0024068:-65168 None:intergenic
GACAGGATTGAAAGTAACAG+AGG 0.681612 tig0024068:+65493 Msa1413840:CDS
TGCGTCAGATGCATCCGTAG+CGG 0.693318 tig0024068:+63612 Msa1413840:CDS
ATGCTCCGAATATGGATACG+TGG 0.705582 tig0024068:+63410 Msa1413840:exon
GAACTCGTTTCCCCTCACAA+AGG 0.708363 tig0024068:+63535 Msa1413840:CDS
TTGTTGCTATATCTGGTGAG+TGG 0.725606 tig0024068:-63341 None:intergenic
AACGCACGTACGATACTACG+TGG 0.751494 tig0024068:+67742 Msa1413840:CDS
TGAATGGGTCTTGATTACCG+GGG 0.757650 tig0024068:+65057 Msa1413840:CDS
AAGATTGAATAGAACCTGAG+TGG 0.761909 tig0024068:-63830 None:intergenic
AATGGGTCTTGATTACCGGG+GGG 0.785902 tig0024068:+65059 Msa1413840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATTAGAATCAATTA+CGG - tig0024068:63958-63977 None:intergenic 10.0%
!!! TTTTTTTTTTATATCTCATT+TGG - tig0024068:66496-66515 None:intergenic 10.0%
!! AAAATATTAATTTACAGTTA+AGG - tig0024068:66864-66883 None:intergenic 10.0%
!!! AACTAAATTTTACAATAAAA+AGG + tig0024068:68225-68244 Msa1413840:intron 10.0%
!!! ATATTTTCCTAATTTATAAT+TGG + tig0024068:69049-69068 Msa1413840:three_prime_UTR 10.0%
!!! TCTTTTCTTTAATTATTTTT+AGG + tig0024068:69268-69287 Msa1413840:three_prime_UTR 10.0%
!!! CTTTTCTTTAATTATTTTTA+GGG + tig0024068:69269-69288 Msa1413840:three_prime_UTR 10.0%
!!! TTTTCTTTAATTATTTTTAG+GGG + tig0024068:69270-69289 Msa1413840:three_prime_UTR 10.0%
!!! ATTTTAGTTAGAATCAATAT+TGG + tig0024068:64036-64055 Msa1413840:intron 15.0%
!! TAAGGAAAAAAAAAAAATAG+TGG + tig0024068:64470-64489 Msa1413840:intron 15.0%
!! AAGGAAAAAAAAAAAATAGT+GGG + tig0024068:64471-64490 Msa1413840:intron 15.0%
!!! ATACTATTCTAAAAACTTTA+GGG - tig0024068:64563-64582 None:intergenic 15.0%
!!! TATACTATTCTAAAAACTTT+AGG - tig0024068:64564-64583 None:intergenic 15.0%
!! TAACTTAAATTCAAGTATTT+AGG + tig0024068:65273-65292 Msa1413840:intron 15.0%
!! GGTTAAATCATATTTATATA+GGG - tig0024068:66586-66605 None:intergenic 15.0%
!! AGGTTAAATCATATTTATAT+AGG - tig0024068:66587-66606 None:intergenic 15.0%
!!! GCTTTTGTTAAATATAATAT+AGG - tig0024068:66607-66626 None:intergenic 15.0%
!! TATTATATTTAACAAAAGCT+TGG + tig0024068:66608-66627 Msa1413840:intron 15.0%
!!! ACTGTAAATTAATATTTTGA+CGG + tig0024068:66866-66885 Msa1413840:intron 15.0%
!!! TAAAGGTTTTTTTTTAACAA+CGG - tig0024068:67530-67549 None:intergenic 15.0%
!!! TCTATAAACATTTTTAATGA+TGG + tig0024068:68202-68221 Msa1413840:intron 15.0%
!! TTCTGTTAAATCAATTTGAA+GGG - tig0024068:63572-63591 None:intergenic 20.0%
!! AGAAATGATTATGACATATT+TGG + tig0024068:63904-63923 Msa1413840:intron 20.0%
!! GTTTACAAAACAAAAAACTA+CGG - tig0024068:64409-64428 None:intergenic 20.0%
!!! TACTATTCTAAAAACTTTAG+GGG - tig0024068:64562-64581 None:intergenic 20.0%
!!! ATTACATGCATGTATATTTT+TGG + tig0024068:64835-64854 Msa1413840:intron 20.0%
!!! TTGAATTTAAGTTAAGTACT+TGG - tig0024068:65267-65286 None:intergenic 20.0%
!! TCATTATCTCATATTATTAC+CGG + tig0024068:65999-66018 Msa1413840:intron 20.0%
!! AACTAATTATATTCAGCAAA+AGG - tig0024068:66189-66208 None:intergenic 20.0%
!!! TTTCCAGGTTAAAATTTTTA+GGG - tig0024068:66268-66287 None:intergenic 20.0%
!!! TCAATTAGTTTATTTCCAAT+TGG + tig0024068:66309-66328 Msa1413840:intron 20.0%
!!! CTGTAAATTAATATTTTGAC+GGG + tig0024068:66867-66886 Msa1413840:intron 20.0%
!!! TAATTTCTAAGAATACAATG+AGG + tig0024068:67669-67688 Msa1413840:intron 20.0%
!! AAAATGTAAACAGGAAAAAA+GGG - tig0024068:68008-68027 None:intergenic 20.0%
!! TAAAATGTAAACAGGAAAAA+AGG - tig0024068:68009-68028 None:intergenic 20.0%
!!! CTGTTTTATAGAAAAGAAAA+TGG + tig0024068:68048-68067 Msa1413840:intron 20.0%
!! AAAAAAGTAGAAGCAATTTA+TGG + tig0024068:68258-68277 Msa1413840:intron 20.0%
!!! ATTGATAATGAATGATTTCT+CGG - tig0024068:68364-68383 None:intergenic 20.0%
!! TCCAATAAGAATAGAATTTA+TGG + tig0024068:68481-68500 Msa1413840:intron 20.0%
!! ACCATAAATTCTATTCTTAT+TGG - tig0024068:68485-68504 None:intergenic 20.0%
!!! TTATGGTAGTTATTTTGAAA+AGG + tig0024068:68498-68517 Msa1413840:intron 20.0%
!! GGAATAAATTATGAGTTTAA+TGG - tig0024068:68608-68627 None:intergenic 20.0%
!! TTAAACTCATAATTTATTCC+AGG + tig0024068:68608-68627 Msa1413840:intron 20.0%
!!! GAGATTATTTTATATATGCA+TGG + tig0024068:68917-68936 Msa1413840:intron 20.0%
!!! TTTTATGTTTTGCCAAATTA+AGG + tig0024068:69304-69323 Msa1413840:three_prime_UTR 20.0%
!!! AAAAAAAAGGTGTATACATA+TGG + tig0024068:69349-69368 Msa1413840:three_prime_UTR 20.0%
!!! AAAAAAAGGTGTATACATAT+GGG + tig0024068:69350-69369 Msa1413840:three_prime_UTR 20.0%
! TCAATTTCAATGAGTAACAA+AGG - tig0024068:63367-63386 None:intergenic 25.0%
! CTTCTGTTAAATCAATTTGA+AGG - tig0024068:63573-63592 None:intergenic 25.0%
!! CTTCAAATTGATTTAACAGA+AGG + tig0024068:63571-63590 Msa1413840:CDS 25.0%
! ATGAATAAACCAGTATCAAT+GGG - tig0024068:63766-63785 None:intergenic 25.0%
! ATGATCATCATGTTAATGTT+TGG + tig0024068:63797-63816 Msa1413840:CDS 25.0%
! TGATCATCATGTTAATGTTT+GGG + tig0024068:63798-63817 Msa1413840:CDS 25.0%
!! CGTCATACTGATAATATTTT+TGG + tig0024068:63858-63877 Msa1413840:intron 25.0%
! TCCTATTGTAAATTGATTGT+AGG + tig0024068:64151-64170 Msa1413840:intron 25.0%
! ACCTACAATCAATTTACAAT+AGG - tig0024068:64155-64174 None:intergenic 25.0%
! TATTGTAAATTGATTGTAGG+TGG + tig0024068:64154-64173 Msa1413840:intron 25.0%
! TATCTGTTTAATCTTAGACA+CGG - tig0024068:64452-64471 None:intergenic 25.0%
!! TGTCTAAGATTAAACAGATA+AGG + tig0024068:64452-64471 Msa1413840:intron 25.0%
!! ACTATTCTAAAAACTTTAGG+GGG - tig0024068:64561-64580 None:intergenic 25.0%
! TTGCACAAGGAAAAAAATAA+AGG - tig0024068:64690-64709 None:intergenic 25.0%
!!! TTTATTTTTTTCCTTGTGCA+AGG + tig0024068:64689-64708 Msa1413840:intron 25.0%
!!! TTATTTTTTATCCTTGCACA+AGG - tig0024068:64703-64722 None:intergenic 25.0%
!!! TTTGTTTTCACCAGAATTAA+GGG - tig0024068:64756-64775 None:intergenic 25.0%
! AGAATAGAATTATGACATAC+TGG + tig0024068:64905-64924 Msa1413840:intron 25.0%
! GAATAGAATTATGACATACT+GGG + tig0024068:64906-64925 Msa1413840:intron 25.0%
! ACATAAAAGAAATCATGTGA+TGG - tig0024068:65000-65019 None:intergenic 25.0%
!! ATGATTTCTTTTATGTCAGA+TGG + tig0024068:65004-65023 Msa1413840:intron 25.0%
!! TCTGAGATTGATTTAAAACT+TGG - tig0024068:65132-65151 None:intergenic 25.0%
! AAAAAAAACCTTAGTTAGCA+CGG - tig0024068:65191-65210 None:intergenic 25.0%
!!! ATGTCTAACTTTTTTGGATA+TGG - tig0024068:65675-65694 None:intergenic 25.0%
! ATAATATGTTCAGTATTAGC+AGG - tig0024068:65811-65830 None:intergenic 25.0%
!! TGCTTTCAAATATTTTCACA+AGG + tig0024068:65838-65857 Msa1413840:intron 25.0%
! AAATTGCTATAGGTAATCAA+GGG + tig0024068:65900-65919 Msa1413840:intron 25.0%
! TTGAATGTAATAACATGTGT+CGG - tig0024068:65974-65993 None:intergenic 25.0%
! TAAATATAAGATATGCCTGA+AGG - tig0024068:66065-66084 None:intergenic 25.0%
! CAGGCATATCTTATATTTAA+CGG + tig0024068:66066-66085 Msa1413840:intron 25.0%
!!! GATTGGTTTTGAGAATTTAT+TGG - tig0024068:66135-66154 None:intergenic 25.0%
!! GTTTCCAGGTTAAAATTTTT+AGG - tig0024068:66269-66288 None:intergenic 25.0%
!! TCCAATTGGTAATATAATTG+AGG + tig0024068:66323-66342 Msa1413840:intron 25.0%
! ACCTCAATTATATTACCAAT+TGG - tig0024068:66327-66346 None:intergenic 25.0%
! TATAGGGATATACATCTATA+AGG - tig0024068:66570-66589 None:intergenic 25.0%
! TTTCCTCAACTGTAAATTAA+GGG + tig0024068:66745-66764 Msa1413840:intron 25.0%
! CTTCTACTATGTTTATTTCA+CGG - tig0024068:66785-66804 None:intergenic 25.0%
!!! CTACTATCATGTTTATTTTG+TGG - tig0024068:66816-66835 None:intergenic 25.0%
!! AAGTATCTTTTGTATTTGTG+CGG - tig0024068:67560-67579 None:intergenic 25.0%
!! AAATATAAAGAAGTGCACAA+GGG + tig0024068:67608-67627 Msa1413840:intron 25.0%
! CTTAGAAATTAGTTACTTAG+CGG - tig0024068:67660-67679 None:intergenic 25.0%
! TAAGAGGATAAAATGTAAAC+AGG - tig0024068:68017-68036 None:intergenic 25.0%
! AACAGTGAAATTAGAATAAG+AGG - tig0024068:68033-68052 None:intergenic 25.0%
!! AGTCCTTTTTCTTCTTTAAT+CGG + tig0024068:68122-68141 Msa1413840:intron 25.0%
! TAAGATTAGAGACTTTAATG+AGG + tig0024068:68159-68178 Msa1413840:intron 25.0%
! CATCAAAATATTTCCTCATA+GGG - tig0024068:68448-68467 None:intergenic 25.0%
! ACATCAAAATATTTCCTCAT+AGG - tig0024068:68449-68468 None:intergenic 25.0%
! TGAAAAGGCAGTTATAAAAT+AGG + tig0024068:68513-68532 Msa1413840:intron 25.0%
!! ATTAAAAAGTGCATGAGATA+CGG - tig0024068:68782-68801 None:intergenic 25.0%
! AATATGTGAAACACAAATGA+AGG - tig0024068:69034-69053 None:intergenic 25.0%
!! TTTGTATTTTGCATGTTTGT+GGG + tig0024068:69079-69098 Msa1413840:three_prime_UTR 25.0%
! TACATCTACTAGATGAAAAA+GGG - tig0024068:69216-69235 None:intergenic 25.0%
! ATGTGTATACAACCTTAATT+TGG - tig0024068:69319-69338 None:intergenic 25.0%
! CATATCTGTACTCAAAAAAA+AGG + tig0024068:69336-69355 Msa1413840:three_prime_UTR 25.0%
CAGCATATTTATGAGCTAAT+TGG - tig0024068:63723-63742 None:intergenic 30.0%
GATGAATAAACCAGTATCAA+TGG - tig0024068:63767-63786 None:intergenic 30.0%
TAGTTAGAATCAATATTGGC+AGG + tig0024068:64040-64059 Msa1413840:intron 30.0%
AGATGCAAAAATAGTAACTC+CGG - tig0024068:64667-64686 None:intergenic 30.0%
! TTGTTTTCACCAGAATTAAG+GGG - tig0024068:64755-64774 None:intergenic 30.0%
!!! CTTTGTTTTCACCAGAATTA+AGG - tig0024068:64757-64776 None:intergenic 30.0%
CTTAATTCTGGTGAAAACAA+AGG + tig0024068:64755-64774 Msa1413840:intron 30.0%
!! TTATGTTAAGCATTGGATGT+TGG - tig0024068:64796-64815 None:intergenic 30.0%
ACATCCAATGCTTAACATAA+CGG + tig0024068:64796-64815 Msa1413840:intron 30.0%
TGATGTTATGTATTGTCGAA+AGG + tig0024068:64966-64985 Msa1413840:intron 30.0%
TTTGATTCCTGTGAGTAATA+AGG - tig0024068:65317-65336 None:intergenic 30.0%
!!! CTCGTAATGTCTAACTTTTT+TGG - tig0024068:65681-65700 None:intergenic 30.0%
CAATGCATTCAAATTGCTAT+AGG + tig0024068:65890-65909 Msa1413840:intron 30.0%
CAAATTGCTATAGGTAATCA+AGG + tig0024068:65899-65918 Msa1413840:intron 30.0%
AATTGCTATAGGTAATCAAG+GGG + tig0024068:65901-65920 Msa1413840:intron 30.0%
ATGTCGATGATATAAAGCAA+AGG - tig0024068:65930-65949 None:intergenic 30.0%
GAATATTCATTGTACAGAAG+CGG - tig0024068:66106-66125 None:intergenic 30.0%
!! TAATTGAGGTTCTGAAAAGT+TGG + tig0024068:66337-66356 Msa1413840:intron 30.0%
TAGAAGAGAAGAAATACATC+AGG + tig0024068:66395-66414 Msa1413840:intron 30.0%
AGAAGAGAAGAAATACATCA+GGG + tig0024068:66396-66415 Msa1413840:intron 30.0%
AGAAAAATAGAACACAGTAG+AGG + tig0024068:66443-66462 Msa1413840:intron 30.0%
!! TATCATACATTGATTCCTGA+CGG + tig0024068:66654-66673 Msa1413840:intron 30.0%
GATAGTAGAAGACAAATCAT+TGG + tig0024068:66715-66734 Msa1413840:intron 30.0%
CTTTCCTCAACTGTAAATTA+AGG + tig0024068:66744-66763 Msa1413840:intron 30.0%
GATAGTAGAAGACAAATCAT+CGG + tig0024068:66715-66734 Msa1413840:intron 30.0%
! AAAAGATTGGCTATTGCTAT+AGG - tig0024068:66924-66943 None:intergenic 30.0%
AGACATATACAGCAAAAGAT+TGG - tig0024068:66937-66956 None:intergenic 30.0%
TTTGGTCATAAACATTCACA+AGG - tig0024068:66960-66979 None:intergenic 30.0%
!!! GTGACTACTAATTGTTGTTT+TGG - tig0024068:66978-66997 None:intergenic 30.0%
TTGATGCATTACAAGAAAAC+AGG - tig0024068:67248-67267 None:intergenic 30.0%
TGATTCAAGATTGAGATTGT+GGG + tig0024068:67330-67349 Msa1413840:CDS 30.0%
TGAGTTGTAGCTAATTGAAT+AGG - tig0024068:67418-67437 None:intergenic 30.0%
! ATTTGTGCGGCTAATTTTAA+AGG - tig0024068:67547-67566 None:intergenic 30.0%
! CAAATATAAAGAAGTGCACA+AGG + tig0024068:67607-67626 Msa1413840:intron 30.0%
TTATTCAGGCATTTGATATG+TGG + tig0024068:67713-67732 Msa1413840:intron 30.0%
AAACAGATTCTACCATTTGA+CGG - tig0024068:67868-67887 None:intergenic 30.0%
TAACTGTAAAATGAACATCC+CGG - tig0024068:67924-67943 None:intergenic 30.0%
AAAGAAAATGGAAGAGATAC+AGG + tig0024068:68060-68079 Msa1413840:intron 30.0%
AGTCCGATTAAAGAAGAAAA+AGG - tig0024068:68128-68147 None:intergenic 30.0%
!! TTGTCTAGTTGGTATTCTTT+TGG + tig0024068:68407-68426 Msa1413840:intron 30.0%
AAAATTGAATGAACCCTATG+AGG + tig0024068:68432-68451 Msa1413840:intron 30.0%
AACTAATCGTCTTACTATGT+AGG - tig0024068:68539-68558 None:intergenic 30.0%
! GTAAGACGATTAGTTCTTAT+TGG + tig0024068:68544-68563 Msa1413840:intron 30.0%
TAAATTGAGATCCATATCCA+AGG - tig0024068:68664-68683 None:intergenic 30.0%
ATATCATTCTCCAACTCTAT+TGG + tig0024068:68709-68728 Msa1413840:intron 30.0%
ATACTTCAATCCAATAGAGT+TGG - tig0024068:68722-68741 None:intergenic 30.0%
! TTAAAAAGTGCATGAGATAC+GGG - tig0024068:68781-68800 None:intergenic 30.0%
!!! AATGATTTTGTTATTGCCAC+AGG + tig0024068:68799-68818 Msa1413840:intron 30.0%
ACGATAGACAAATTCTTGTA+TGG + tig0024068:68840-68859 Msa1413840:CDS 30.0%
CTGCACACCAATTATAAATT+AGG - tig0024068:69059-69078 None:intergenic 30.0%
! GTTTGTATTTTGCATGTTTG+TGG + tig0024068:69078-69097 Msa1413840:three_prime_UTR 30.0%
! TGTGTAAATAAGGTTTGTTC+TGG + tig0024068:69103-69122 Msa1413840:three_prime_UTR 30.0%
!!! AATAAGGTTTGTTCTGGTTT+TGG + tig0024068:69109-69128 Msa1413840:three_prime_UTR 30.0%
ATTCTACCTACAAAAGCAAT+GGG - tig0024068:69186-69205 None:intergenic 30.0%
AATTCTACCTACAAAAGCAA+TGG - tig0024068:69187-69206 None:intergenic 30.0%
CTACATCTACTAGATGAAAA+AGG - tig0024068:69217-69236 None:intergenic 30.0%
ATAGAAGTCCAATTACGAAG+TGG + tig0024068:63228-63247 Msa1413840:five_prime_UTR 35.0%
TGTTTCATCCACTTCGTAAT+TGG - tig0024068:63239-63258 None:intergenic 35.0%
ACAAAGGTTGTTGCTATATC+TGG - tig0024068:63351-63370 None:intergenic 35.0%
!! TCGGAGCATCTTTGAATTTT+TGG - tig0024068:63399-63418 None:intergenic 35.0%
ATTCAAAGATGCTCCGAATA+TGG + tig0024068:63402-63421 Msa1413840:exon 35.0%
TTCTTCCACGTATCCATATT+CGG - tig0024068:63418-63437 None:intergenic 35.0%
AACATCAAAGACAGAGAATC+CGG + tig0024068:63436-63455 Msa1413840:CDS 35.0%
! TGATTTTATGCGATTAGCGA+AGG - tig0024068:63479-63498 None:intergenic 35.0%
AATTAATTGCGCCTTTGTGA+GGG - tig0024068:63549-63568 None:intergenic 35.0%
ATGCTGTATCTTCAGCTATT+TGG + tig0024068:63737-63756 Msa1413840:CDS 35.0%
ATTTGGTATCCCATTGATAC+TGG + tig0024068:63754-63773 Msa1413840:CDS 35.0%
!! GATACTGGTTTATTCATCAC+TGG + tig0024068:63769-63788 Msa1413840:CDS 35.0%
AAGATTGAATAGAACCTGAG+TGG - tig0024068:63833-63852 None:intergenic 35.0%
CATGCAGATACATTCATCAA+AGG - tig0024068:63996-64015 None:intergenic 35.0%
!! TGTCTCTAACACTAGTTCTA+CGG - tig0024068:64094-64113 None:intergenic 35.0%
TGTAAATTGATTGTAGGTGG+TGG + tig0024068:64157-64176 Msa1413840:intron 35.0%
GAATTTCAAAATGCCTGGAA+AGG + tig0024068:64181-64200 Msa1413840:CDS 35.0%
TTCCAACATACTCATTTGTG+TGG + tig0024068:64362-64381 Msa1413840:intron 35.0%
! GGTCTTTACTAGTCTAAACT+TGG - tig0024068:64431-64450 None:intergenic 35.0%
! ATTCTAAAAACTTTAGGGGG+TGG - tig0024068:64558-64577 None:intergenic 35.0%
GTGCTAATCATTATGCTGAA+GGG - tig0024068:64613-64632 None:intergenic 35.0%
AGTGCTAATCATTATGCTGA+AGG - tig0024068:64614-64633 None:intergenic 35.0%
AAGAATCAACCCCTTAATTC+TGG + tig0024068:64743-64762 Msa1413840:intron 35.0%
GCTTGACATATTTCACAAGT+GGG - tig0024068:64861-64880 None:intergenic 35.0%
AGCTTGACATATTTCACAAG+TGG - tig0024068:64862-64881 None:intergenic 35.0%
TTATGACATACTGGGAACTT+AGG + tig0024068:64914-64933 Msa1413840:intron 35.0%
TGTTATGTATTGTCGAAAGG+AGG + tig0024068:64969-64988 Msa1413840:intron 35.0%
ATGGTGTAATGACTGTTGAA+TGG + tig0024068:65023-65042 Msa1413840:CDS 35.0%
!! TGATGGTGCAATACGTTTTT+GGG + tig0024068:65084-65103 Msa1413840:CDS 35.0%
!!! CAATACGTTTTTGGGACATA+AGG + tig0024068:65092-65111 Msa1413840:CDS 35.0%
TCAAATACAAAAATGCGTCC+TGG + tig0024068:65332-65351 Msa1413840:CDS 35.0%
GGATGTAATTTCTGCTTCAT+TGG - tig0024068:65425-65444 None:intergenic 35.0%
ATGAAGCAGAAATTACATCC+AGG + tig0024068:65425-65444 Msa1413840:CDS 35.0%
TTAGACATTACGAGTTCAAG+CGG + tig0024068:65687-65706 Msa1413840:intron 35.0%
CATGCTTTATGTCTAGTGAT+TGG - tig0024068:66152-66171 None:intergenic 35.0%
CAATCACTAGACATAAAGCA+TGG + tig0024068:66150-66169 Msa1413840:intron 35.0%
! ATCTCTTCTCTGAAAGTCAT+AGG + tig0024068:66227-66246 Msa1413840:intron 35.0%
AGTCATAGGCAGACTTTATT+TGG + tig0024068:66241-66260 Msa1413840:intron 35.0%
!! GGACCCTAAAAATTTTAACC+TGG + tig0024068:66262-66281 Msa1413840:intron 35.0%
AAAAGCTTGGACATCACATA+TGG + tig0024068:66621-66640 Msa1413840:intron 35.0%
!! ATCATACATTGATTCCTGAC+GGG + tig0024068:66655-66674 Msa1413840:intron 35.0%
CAACCCTTAATTTACAGTTG+AGG - tig0024068:66751-66770 None:intergenic 35.0%
ACAATTAGTAGTCACTCAAG+AGG + tig0024068:66983-67002 Msa1413840:intron 35.0%
CTGATTCAAGATTGAGATTG+TGG + tig0024068:67329-67348 Msa1413840:CDS 35.0%
ATTAGTTACTTAGCGGTTGA+GGG - tig0024068:67653-67672 None:intergenic 35.0%
AATTAGTTACTTAGCGGTTG+AGG - tig0024068:67654-67673 None:intergenic 35.0%
ATCTCACTTCTGGATTATTC+AGG + tig0024068:67699-67718 Msa1413840:intron 35.0%
ATGAATCTATAAACTCCTGC+TGG + tig0024068:67770-67789 Msa1413840:CDS 35.0%
! ATCTTGTTGATTAAACCAGC+AGG - tig0024068:67788-67807 None:intergenic 35.0%
CTGGTTTAATCAACAAGATC+AGG + tig0024068:67789-67808 Msa1413840:CDS 35.0%
! TTTTCCTGCTCTGTTATAAG+TGG + tig0024068:67841-67860 Msa1413840:intron 35.0%
GTCAAATGGTAGAATCTGTT+TGG + tig0024068:67867-67886 Msa1413840:intron 35.0%
!! CGTATGAGTTGATTAGAGAA+GGG - tig0024068:67960-67979 None:intergenic 35.0%
CCTTCTCTAATCAACTCATA+CGG + tig0024068:67958-67977 Msa1413840:intron 35.0%
GAAAAAAGGGAAGGAAAGTA+AGG - tig0024068:67995-68014 None:intergenic 35.0%
TGTAAACAGGAAAAAAGGGA+AGG - tig0024068:68004-68023 None:intergenic 35.0%
ATCAACTTGAAACCGATCAA+TGG + tig0024068:68286-68305 Msa1413840:intron 35.0%
GTAAAATCAGTAGGTTGTTG+TGG - tig0024068:68342-68361 None:intergenic 35.0%
GATTTCTCGGTAAAATCAGT+AGG - tig0024068:68351-68370 None:intergenic 35.0%
AAAGTCATTGCTTGTCTAGT+TGG + tig0024068:68396-68415 Msa1413840:intron 35.0%
! GCAAAACTATTTTACACCGT+TGG + tig0024068:68575-68594 Msa1413840:intron 35.0%
!! TACTGGTTGTTATTTCATCC+TGG - tig0024068:68629-68648 None:intergenic 35.0%
TATCACAAGGTCAGACATAT+TGG - tig0024068:68955-68974 None:intergenic 35.0%
GTTTGTGGGATGTGTAAATA+AGG + tig0024068:69093-69112 Msa1413840:three_prime_UTR 35.0%
CATCTAGTAGATGTAGACTT+TGG + tig0024068:69221-69240 Msa1413840:three_prime_UTR 35.0%
! GAACTCAAGTGGACTCAAAT+GGG - tig0024068:63264-63283 None:intergenic 40.0%
TTGTTGCTATATCTGGTGAG+TGG - tig0024068:63344-63363 None:intergenic 40.0%
! GGAATTTGGACGCAATTTTC+CGG - tig0024068:63458-63477 None:intergenic 40.0%
ATGCGATTAGCGAAGGAATT+TGG - tig0024068:63472-63491 None:intergenic 40.0%
ATTAATTGCGCCTTTGTGAG+GGG - tig0024068:63548-63567 None:intergenic 40.0%
GAATTAATTGCGCCTTTGTG+AGG - tig0024068:63550-63569 None:intergenic 40.0%
GCAGATACATTCATCAAAGG+TGG - tig0024068:63993-64012 None:intergenic 40.0%
GTGGTGAATTTCAAAATGCC+TGG + tig0024068:64176-64195 Msa1413840:CDS 40.0%
CGTCTTTGTGATATTGCTTC+TGG + tig0024068:64278-64297 Msa1413840:CDS 40.0%
GCATTTGCTCATACTTTGTC+TGG + tig0024068:64302-64321 Msa1413840:CDS 40.0%
GACCACACAAATGAGTATGT+TGG - tig0024068:64367-64386 None:intergenic 40.0%
GTGAAACTGTGTTTCGTAAG+TGG + tig0024068:64504-64523 Msa1413840:intron 40.0%
TGGAAATCGTCCTTAGAACT+GGG + tig0024068:64524-64543 Msa1413840:intron 40.0%
TATACGAACCAGCAACATGT+AGG + tig0024068:64633-64652 Msa1413840:intron 40.0%
TCTATCTAGTCACCTATCAG+TGG - tig0024068:64888-64907 None:intergenic 40.0%
AATGGTCTGCTTCAAGTGAA+TGG + tig0024068:65041-65060 Msa1413840:CDS 40.0%
ATGGTCTGCTTCAAGTGAAT+GGG + tig0024068:65042-65061 Msa1413840:CDS 40.0%
AGTGAATGGGTCTTGATTAC+CGG + tig0024068:65055-65074 Msa1413840:CDS 40.0%
!! GTGATGGTGCAATACGTTTT+TGG + tig0024068:65083-65102 Msa1413840:CDS 40.0%
AGACTCGCAAATTACGAACA+AGG - tig0024068:65227-65246 None:intergenic 40.0%
CCTGTGAGTAATAAGGCTTT+AGG - tig0024068:65310-65329 None:intergenic 40.0%
!! CCTAAAGCCTTATTACTCAC+AGG + tig0024068:65307-65326 Msa1413840:intron 40.0%
AAGAAAGTTGCCAATGGAAG+TGG + tig0024068:65359-65378 Msa1413840:CDS 40.0%
TCCAGGAATGATTTCTACTC+AGG + tig0024068:65442-65461 Msa1413840:CDS 40.0%
TCCTGAGTAGAAATCATTCC+TGG - tig0024068:65446-65465 None:intergenic 40.0%
GACAGGATTGAAAGTAACAG+AGG + tig0024068:65493-65512 Msa1413840:CDS 40.0%
GGATTGAAAGTAACAGAGGA+TGG + tig0024068:65497-65516 Msa1413840:CDS 40.0%
! CATGGGTCTATTGACTAGTA+TGG - tig0024068:65562-65581 None:intergenic 40.0%
ATGAGACACTGTGCTAACAT+GGG - tig0024068:65579-65598 None:intergenic 40.0%
TATGAGACACTGTGCTAACA+TGG - tig0024068:65580-65599 None:intergenic 40.0%
TTAGCACAGTGTCTCATACA+AGG + tig0024068:65582-65601 Msa1413840:intron 40.0%
ATGCATTGCAGATTGACAGA+AGG - tig0024068:65878-65897 None:intergenic 40.0%
!! ATTATTACCGGTGTCATGTC+CGG + tig0024068:66011-66030 Msa1413840:intron 40.0%
CTAGACATAAAGCATGGTCT+TGG + tig0024068:66156-66175 Msa1413840:intron 40.0%
ACTGTGTCTATATGGTTTCC+AGG - tig0024068:66283-66302 None:intergenic 40.0%
GACGATTCACTGTGTCTATA+TGG - tig0024068:66291-66310 None:intergenic 40.0%
AGAAGAAATACATCAGGGTG+AGG + tig0024068:66401-66420 Msa1413840:intron 40.0%
!! TCATACATTGATTCCTGACG+GGG + tig0024068:66656-66675 Msa1413840:intron 40.0%
ACAGAGGGCAGATAAGTATT+AGG + tig0024068:66896-66915 Msa1413840:intron 40.0%
TTGATGTTCTGTCTGATGAC+AGG + tig0024068:67304-67323 Msa1413840:intron 40.0%
TGATGTTCTGTCTGATGACA+GGG + tig0024068:67305-67324 Msa1413840:intron 40.0%
! TAGGTTTGCTTGTTTGCAAG+CGG - tig0024068:67399-67418 None:intergenic 40.0%
CATGCATGGAACAAAAACGA+CGG - tig0024068:67449-67468 None:intergenic 40.0%
!! TCGTTTTTGTTCCATGCATG+AGG + tig0024068:67449-67468 Msa1413840:CDS 40.0%
! CGTTTTTGTTCCATGCATGA+GGG + tig0024068:67450-67469 Msa1413840:CDS 40.0%
ATGAGGGTTGTGAAAGTAAG+TGG + tig0024068:67466-67485 Msa1413840:intron 40.0%
TTAGTTACTTAGCGGTTGAG+GGG - tig0024068:67652-67671 None:intergenic 40.0%
AGGCATTTGATATGTGGTCT+GGG + tig0024068:67719-67738 Msa1413840:intron 40.0%
GTTATAAGTGGTCCGTCAAA+TGG + tig0024068:67853-67872 Msa1413840:intron 40.0%
GTAGAATCTGTTTGGTTGTC+AGG + tig0024068:67875-67894 Msa1413840:intron 40.0%
!! CCGTATGAGTTGATTAGAGA+AGG - tig0024068:67961-67980 None:intergenic 40.0%
TAATCAACTCATACGGCGTA+TGG + tig0024068:67965-67984 Msa1413840:intron 40.0%
AAATCAGTAGGTTGTTGTGG+CGG - tig0024068:68339-68358 None:intergenic 40.0%
GTTTAATGGCTATGCACCAA+CGG - tig0024068:68594-68613 None:intergenic 40.0%
AAGGTCAATTGCCGATGAAA+TGG + tig0024068:68871-68890 Msa1413840:CDS 40.0%
! CAAAGAGTGCACCATTTCAT+CGG - tig0024068:68885-68904 None:intergenic 40.0%
ACAAGGTCAGACATATTGGA+AGG - tig0024068:68951-68970 None:intergenic 40.0%
TGACCTTGTGATAAACTGCA+GGG + tig0024068:68962-68981 Msa1413840:intron 40.0%
! GGAACTCAAGTGGACTCAAA+TGG - tig0024068:63265-63284 None:intergenic 45.0%
TTTGAGTCCACTTGAGTTCC+AGG + tig0024068:63265-63284 Msa1413840:five_prime_UTR 45.0%
TCTGGTGAGTGGTGATACTA+CGG - tig0024068:63333-63352 None:intergenic 45.0%
ATGCTCCGAATATGGATACG+TGG + tig0024068:63410-63429 Msa1413840:exon 45.0%
! GCAGTCTTATACACCTTTCC+AGG - tig0024068:64197-64216 None:intergenic 45.0%
TCTCATACGCTTATTGCTGC+TGG + tig0024068:64236-64255 Msa1413840:CDS 45.0%
CATACTTTGTCTGGTCATCG+TGG + tig0024068:64311-64330 Msa1413840:CDS 45.0%
GTGGAAATCGTCCTTAGAAC+TGG + tig0024068:64523-64542 Msa1413840:intron 45.0%
GGAAATCGTCCTTAGAACTG+GGG + tig0024068:64525-64544 Msa1413840:intron 45.0%
GAAATCGTCCTTAGAACTGG+GGG + tig0024068:64526-64545 Msa1413840:intron 45.0%
CACTCAAACCTACATGTTGC+TGG - tig0024068:64644-64663 None:intergenic 45.0%
CAACATGTAGGTTTGAGTGC+CGG + tig0024068:64645-64664 Msa1413840:intron 45.0%
AGCGCCGTTATGTTAAGCAT+TGG - tig0024068:64803-64822 None:intergenic 45.0%
ATCTAGTCACCTATCAGTGG+TGG - tig0024068:64885-64904 None:intergenic 45.0%
GTGAATGGGTCTTGATTACC+GGG + tig0024068:65056-65075 Msa1413840:CDS 45.0%
TGAATGGGTCTTGATTACCG+GGG + tig0024068:65057-65076 Msa1413840:CDS 45.0%
AATCAATCTCAGACGCAGCT+TGG + tig0024068:65139-65158 Msa1413840:CDS 45.0%
CAAACGTTCCGTGCTAACTA+AGG + tig0024068:65180-65199 Msa1413840:CDS 45.0%
TTGGCAACTTTCTTCTGTCC+AGG - tig0024068:65353-65372 None:intergenic 45.0%
GGACAGAAGAAAGTTGCCAA+TGG + tig0024068:65353-65372 Msa1413840:CDS 45.0%
TTAGATGATAGCCTGCCAGT+TGG - tig0024068:65398-65417 None:intergenic 45.0%
AACTGGCAGGCTATCATCTA+AGG + tig0024068:65397-65416 Msa1413840:CDS 45.0%
ACTGGCAGGCTATCATCTAA+GGG + tig0024068:65398-65417 Msa1413840:CDS 45.0%
GATCGTGCAACTGCTCATTA+TGG + tig0024068:65464-65483 Msa1413840:CDS 45.0%
GGCATGTATCTCTTAAGTGC+AGG + tig0024068:65518-65537 Msa1413840:CDS 45.0%
!! AACATGTGTCGGTGTTGTGT+CGG - tig0024068:65963-65982 None:intergenic 45.0%
CACAACAGTCTTGCACTCAA+TGG + tig0024068:66522-66541 Msa1413840:intron 45.0%
AGTCTTGCACTCAATGGAAC+TGG + tig0024068:66528-66547 Msa1413840:intron 45.0%
!! CATACATTGATTCCTGACGG+GGG + tig0024068:66657-66676 Msa1413840:intron 45.0%
!! ATACATTGATTCCTGACGGG+GGG + tig0024068:66658-66677 Msa1413840:intron 45.0%
AGATTGTGGGATGTTGAGTC+AGG + tig0024068:67343-67362 Msa1413840:CDS 45.0%
ACTTTCACAACCCTCATGCA+TGG - tig0024068:67463-67482 None:intergenic 45.0%
AGGAACACTGATCTCACTTC+TGG + tig0024068:67689-67708 Msa1413840:intron 45.0%
CAGGCATTTGATATGTGGTC+TGG + tig0024068:67718-67737 Msa1413840:intron 45.0%
GATCAGGTATGTTCAACAGC+TGG + tig0024068:67805-67824 Msa1413840:intron 45.0%
ATCTGTTTGGTTGTCAGGTC+TGG + tig0024068:67880-67899 Msa1413840:intron 45.0%
GCTCATCTCAGACCATTGAT+CGG - tig0024068:68301-68320 None:intergenic 45.0%
!! CAAGGCTAATGCTGCTTTAC+TGG - tig0024068:68646-68665 None:intergenic 45.0%
! CAGTAAAGCAGCATTAGCCT+TGG + tig0024068:68644-68663 Msa1413840:intron 45.0%
!! AGCAGCATTAGCCTTGGATA+TGG + tig0024068:68650-68669 Msa1413840:intron 45.0%
TTCTTGTATGGTCACCTGCA+AGG + tig0024068:68852-68871 Msa1413840:CDS 45.0%
CTGACCTTGTGATAAACTGC+AGG + tig0024068:68961-68980 Msa1413840:intron 45.0%
GGAGCAGATGTGAAACACAT+AGG + tig0024068:69130-69149 Msa1413840:three_prime_UTR 45.0%
!! GTGTAGCCCATTGCTTTTGT+AGG + tig0024068:69177-69196 Msa1413840:three_prime_UTR 45.0%
!! TATTATACAATAATATATTA+TGG + tig0024068:67177-67196 Msa1413840:intron 5.0%
!!! ATATTAAACTTTTTTTTTTT+TGG + tig0024068:69391-69410 Msa1413840:three_prime_UTR 5.0%
CTTCACTCCTGGAACTCAAG+TGG - tig0024068:63275-63294 None:intergenic 50.0%
CACTTGAGTTCCAGGAGTGA+AGG + tig0024068:63273-63292 Msa1413840:five_prime_UTR 50.0%
TTGAGTTCCAGGAGTGAAGG+AGG + tig0024068:63276-63295 Msa1413840:five_prime_UTR 50.0%
TCTTCTTCCTCCTTCACTCC+TGG - tig0024068:63286-63305 None:intergenic 50.0%
GAAGAAGACGACGACGACTT+TGG + tig0024068:63301-63320 Msa1413840:five_prime_UTR 50.0%
GAACTCGTTTCCCCTCACAA+AGG + tig0024068:63535-63554 Msa1413840:CDS 50.0%
GTGAACGTCGTAAACCGCTA+CGG - tig0024068:63629-63648 None:intergenic 50.0%
TAGCGGTTTACGACGTTCAC+CGG + tig0024068:63629-63648 Msa1413840:CDS 50.0%
TTGGGACACTAACACCACTC+AGG + tig0024068:63816-63835 Msa1413840:CDS 50.0%
GCTTATTGCTGCTGGAACTG+AGG + tig0024068:64244-64263 Msa1413840:CDS 50.0%
! AGCATTGGATGTTGGCACAG+TGG - tig0024068:64788-64807 None:intergenic 50.0%
TGTCAAGCTCCACCACTGAT+AGG + tig0024068:64873-64892 Msa1413840:intron 50.0%
GAATGGGTCTTGATTACCGG+GGG + tig0024068:65058-65077 Msa1413840:CDS 50.0%
AATGGGTCTTGATTACCGGG+GGG + tig0024068:65059-65078 Msa1413840:CDS 50.0%
!!! TTTTGGGACATAAGGCGTGC+TGG + tig0024068:65100-65119 Msa1413840:CDS 50.0%
CGGAACGTTTGAGTAGAGGT+GGG - tig0024068:65171-65190 None:intergenic 50.0%
ACGGAACGTTTGAGTAGAGG+TGG - tig0024068:65172-65191 None:intergenic 50.0%
AGCACGGAACGTTTGAGTAG+AGG - tig0024068:65175-65194 None:intergenic 50.0%
! ATGTCCACTGCCACTTCCAT+TGG - tig0024068:65372-65391 None:intergenic 50.0%
!! GCTCATTATGGTGCTGTGAC+AGG + tig0024068:65476-65495 Msa1413840:CDS 50.0%
ACAAACACCGGACATGACAC+CGG - tig0024068:66021-66040 None:intergenic 50.0%
! GCACTGGCATACACAAACAC+CGG - tig0024068:66033-66052 None:intergenic 50.0%
!! CTGAAGGCACTATGAAGCAC+TGG - tig0024068:66049-66068 None:intergenic 50.0%
CAGTGCTTCATAGTGCCTTC+AGG + tig0024068:66047-66066 Msa1413840:intron 50.0%
ATCAGGGTGAGGTAGAGAAG+TGG + tig0024068:66412-66431 Msa1413840:intron 50.0%
GCACTCAATGGAACTGGCTA+AGG + tig0024068:66534-66553 Msa1413840:intron 50.0%
! TTTTGACGGGACTGCAACAG+AGG + tig0024068:66880-66899 Msa1413840:intron 50.0%
TTTGACGGGACTGCAACAGA+GGG + tig0024068:66881-66900 Msa1413840:intron 50.0%
AACGCACGTACGATACTACG+TGG + tig0024068:67742-67761 Msa1413840:CDS 50.0%
CGGACCACTTATAACAGAGC+AGG - tig0024068:67848-67867 None:intergenic 50.0%
!! GTCTGGCTGTTTGGTTTGTC+AGG + tig0024068:67897-67916 Msa1413840:intron 50.0%
!! GCTGTTTGGTTTGTCAGGTC+CGG + tig0024068:67902-67921 Msa1413840:intron 50.0%
!! CTGTTTGGTTTGTCAGGTCC+GGG + tig0024068:67903-67922 Msa1413840:intron 50.0%
TTGCCACAGGAGTTGTACAC+AGG + tig0024068:68812-68831 Msa1413840:intron 50.0%
TCATCGGCAATTGACCTTGC+AGG - tig0024068:68869-68888 None:intergenic 50.0%
TCGCCCTGCAGTTTATCACA+AGG - tig0024068:68968-68987 None:intergenic 50.0%
TGTGATAAACTGCAGGGCGA+AGG + tig0024068:68968-68987 Msa1413840:intron 50.0%
CTCAGTTACTCCAGCTATCC+TGG - tig0024068:69006-69025 None:intergenic 50.0%
GACGACGACGACTTTGGTTG+TGG + tig0024068:63307-63326 Msa1413840:five_prime_UTR 55.0%
TGCGTCAGATGCATCCGTAG+CGG + tig0024068:63612-63631 Msa1413840:CDS 55.0%
CCATCTCCGTCGAAATCGCT+CGG - tig0024068:63655-63674 None:intergenic 55.0%
! TTGATTACCGGGGGGTGTGA+TGG + tig0024068:65067-65086 Msa1413840:CDS 55.0%
TATTGCACCATCACACCCCC+CGG - tig0024068:65077-65096 None:intergenic 55.0%
GTTGCCAATGGAAGTGGCAG+TGG + tig0024068:65365-65384 Msa1413840:CDS 55.0%
! ATTGATTCCTGACGGGGGGA+AGG + tig0024068:66662-66681 Msa1413840:intron 55.0%
TTGATTCCTGACGGGGGGAA+GGG + tig0024068:66663-66682 Msa1413840:intron 55.0%
! AAGAGGCAGCGAGCTTTGAC+TGG + tig0024068:67000-67019 Msa1413840:intron 55.0%
AGCGGTTGAGGGGTGGAATT+GGG - tig0024068:67642-67661 None:intergenic 55.0%
TAGCGGTTGAGGGGTGGAAT+TGG - tig0024068:67643-67662 None:intergenic 55.0%
GTTACTTAGCGGTTGAGGGG+TGG - tig0024068:67649-67668 None:intergenic 55.0%
GGTTGTCAGGTCTGGCTGTT+TGG + tig0024068:67888-67907 Msa1413840:intron 55.0%
TAGGTTGTTGTGGCGGTGGT+GGG - tig0024068:68332-68351 None:intergenic 55.0%
TCAGTAGGTTGTTGTGGCGG+TGG - tig0024068:68336-68355 None:intergenic 55.0%
CCACCTGTGTACAACTCCTG+TGG - tig0024068:68818-68837 None:intergenic 55.0%
CCACAGGAGTTGTACACAGG+TGG + tig0024068:68815-68834 Msa1413840:intron 55.0%
ACTCCAGCTATCCTGGTCGT+CGG - tig0024068:68999-69018 None:intergenic 55.0%
CCGAGCGATTTCGACGGAGA+TGG + tig0024068:63652-63671 Msa1413840:CDS 60.0%
GGCATGCACCCCCAGTTCTA+AGG - tig0024068:64537-64556 None:intergenic 60.0%
GGCAGTGGACATCTGCCAAC+TGG + tig0024068:65380-65399 Msa1413840:CDS 60.0%
GTGGACATCTGCCAACTGGC+AGG + tig0024068:65384-65403 Msa1413840:CDS 60.0%
AGGTTGTTGTGGCGGTGGTG+GGG - tig0024068:68331-68350 None:intergenic 60.0%
GTAGGTTGTTGTGGCGGTGG+TGG - tig0024068:68333-68352 None:intergenic 60.0%
ATCCCGACGACCAGGATAGC+TGG + tig0024068:68993-69012 Msa1413840:CDS 60.0%
CTCCAGCTATCCTGGTCGTC+GGG - tig0024068:68998-69017 None:intergenic 60.0%
CACCGGCCGAGCGATTTCGA+CGG + tig0024068:63646-63665 Msa1413840:CDS 65.0%
CTCCGTCGAAATCGCTCGGC+CGG - tig0024068:63651-63670 None:intergenic 65.0%
CTTCAACCCTTCCCCCCGTC+AGG - tig0024068:66672-66691 None:intergenic 65.0%
CGAAGGAGATCCCGACGACC+AGG + tig0024068:68985-69004 Msa1413840:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0024068 gene 63224 69423 63224 ID=Msa1413840;Name=Msa1413840
tig0024068 mRNA 63224 69423 63224 ID=Msa1413840-mRNA-1;Parent=Msa1413840;Name=Msa1413840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=197|1|1|1|1|1|8|399|441
tig0024068 exon 63224 63837 63224 ID=Msa1413840-mRNA-1:exon:21414;Parent=Msa1413840-mRNA-1
tig0024068 exon 64173 64332 64173 ID=Msa1413840-mRNA-1:exon:21415;Parent=Msa1413840-mRNA-1
tig0024068 exon 65023 65201 65023 ID=Msa1413840-mRNA-1:exon:21416;Parent=Msa1413840-mRNA-1
tig0024068 exon 65329 65539 65329 ID=Msa1413840-mRNA-1:exon:21417;Parent=Msa1413840-mRNA-1
tig0024068 exon 67326 67480 67326 ID=Msa1413840-mRNA-1:exon:21418;Parent=Msa1413840-mRNA-1
tig0024068 exon 67721 67810 67721 ID=Msa1413840-mRNA-1:exon:21419;Parent=Msa1413840-mRNA-1
tig0024068 exon 68821 68892 68821 ID=Msa1413840-mRNA-1:exon:21420;Parent=Msa1413840-mRNA-1
tig0024068 exon 68983 69423 68983 ID=Msa1413840-mRNA-1:exon:21421;Parent=Msa1413840-mRNA-1
tig0024068 five_prime_UTR 63224 63420 63224 ID=Msa1413840-mRNA-1:five_prime_utr;Parent=Msa1413840-mRNA-1
tig0024068 CDS 63421 63837 63421 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 64173 64332 64173 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 65023 65201 65023 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 65329 65539 65329 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 67326 67480 67326 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 67721 67810 67721 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 68821 68892 68821 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 CDS 68983 69024 68983 ID=Msa1413840-mRNA-1:cds;Parent=Msa1413840-mRNA-1
tig0024068 three_prime_UTR 69025 69423 69025 ID=Msa1413840-mRNA-1:three_prime_utr;Parent=Msa1413840-mRNA-1
Gene Sequence

>Msa1413840

ATGGATACGTGGAAGAACATCAAAGACAGAGAATCCGGAAAATTGCGTCCAAATTCCTTCGCTAATCGCATAAAATCAAATCGAATTTCACAACTCGAGTTATCAAATCACAAAGAACTCGTTTCCCCTCACAAAGGCGCAATTAATTCCCTTCAAATTGATTTAACAGAAGGAAGATATCTGTTATCTGCTGCGTCAGATGCATCCGTAGCGGTTTACGACGTTCACCGGCCGAGCGATTTCGACGGAGATGGTTTGATAACGAAACACAATTGTTTATTTGTTGTTGATAAGCAACACCAATTAGCTCATAAATATGCTGTATCTTCAGCTATTTGGTATCCCATTGATACTGGTTTATTCATCACTGGTTCTTATGATCATCATGTTAATGTTTGGGACACTAACACCACTCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTGTATAAGACTGCAATGTCTACATTGTCAACATCTCATACGCTTATTGCTGCTGGAACTGAGGATGTACAAGTTCGTCTTTGTGATATTGCTTCTGGTGCATTTGCTCATACTTTGTCTGGTCATCGTGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACCGGGGGGTGTGATGGTGCAATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCAGACGCAGCTTGGACGACGCCCACCTCTACTCAAACGTTCCGTGCTAACTAAGGAATCAAATACAAAAATGCGTCCTGGACAGAAGAAAGTTGCCAATGGAAGTGGCAGTGGACATCTGCCAACTGGCAGGCTATCATCTAAGGGTCCAATGAAGCAGAAATTACATCCAGGAATGATTTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGATTGAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGGTCTGATTCAAGATTGAGATTGTGGGATGTTGAGTCAGGCTGCGACACACTTGTGAACTTCGAAACAGTCCGCTTGCAAACAAGCAAACCTATTCAATTAGCTACAACTCAAGACTCGACCGTCGTTTTTGTTCCATGCATGAGGGTTGTGAAAGCATTTGATATGTGGTCTGGGAACGCACGTACGATACTACGTGGACACTATGAATCTATAAACTCCTGCTGGTTTAATCAACAAGATCAGGAGTTGTACACAGGTGGAAACGATAGACAAATTCTTGTATGGTCACCTGCAAGGTCAATTGCCGATGAAATGGGCGAAGGAGATCCCGACGACCAGGATAGCTGGAGTAACTGA
Protein sequence

>Msa1413840

MDTWKNIKDRESGKLRPNSFANRIKSNRISQLELSNHKELVSPHKGAINSLQIDLTEGRYLLSAASDASVAVYDVHRPSDFDGDGLITKHNCLFVVDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHHVNVWDTNTTQVVVNFKMPGKVYKTAMSTLSTSHTLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSQTQLGRRPPLLKRSVLTKESNTKMRPGQKKVANGSGSGHLPTGRLSSKGPMKQKLHPGMISTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQTSKPIQLATTQDSTVVFVPCMRVVKAFDMWSGNARTILRGHYESINSCWFNQQDQELYTGGNDRQILVWSPARSIADEMGEGDPDDQDSWSN*