Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101840 | XP_003589251.2 | 87.348 | 411 | 6 | 1 | 1 | 365 | 414 | 824 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101840 | sp|Q9SZA7|DRL29_ARATH | 51.574 | 413 | 151 | 3 | 1 | 365 | 405 | 816 | 1.29e-137 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101840 | G7I4I5 | 87.348 | 411 | 6 | 1 | 1 | 365 | 414 | 824 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015100 | Msa0101840 | 0.838796 | 2.324143e-57 | -8.615850e-47 |
| Msa0019520 | Msa0101840 | 0.821928 | 3.111124e-53 | -8.615850e-47 |
| Msa0049770 | Msa0101840 | 0.837282 | 5.699527e-57 | -8.615850e-47 |
| Msa0051200 | Msa0101840 | 0.976221 | 2.055234e-141 | -8.615850e-47 |
| Msa0051460 | Msa0101840 | 0.970192 | 3.027067e-131 | -8.615850e-47 |
| Msa0066390 | Msa0101840 | 0.812683 | 3.747784e-51 | -8.615850e-47 |
| Msa0086590 | Msa0101840 | 0.808866 | 2.509004e-50 | -8.615850e-47 |
| Msa0088550 | Msa0101840 | 0.813436 | 2.561918e-51 | -8.615850e-47 |
| Msa0094940 | Msa0101840 | -0.806023 | 1.005742e-49 | -8.615850e-47 |
| Msa0101840 | Msa0135360 | 0.810727 | 9.982036e-51 | -8.615850e-47 |
| Msa0101840 | Msa0143920 | 0.971308 | 5.840543e-133 | -8.615850e-47 |
| Msa0101840 | Msa0179860 | 0.822360 | 2.469076e-53 | -8.615850e-47 |
| Msa0101840 | Msa0201330 | 0.811936 | 5.455961e-51 | -8.615850e-47 |
| Msa0101840 | Msa0226620 | -0.820241 | 7.608878e-53 | -8.615850e-47 |
| Msa0101840 | Msa0243930 | 0.808684 | 2.744661e-50 | -8.615850e-47 |
| Msa0101840 | Msa0243940 | 0.801340 | 9.428612e-49 | -8.615850e-47 |
| Msa0101840 | Msa0260270 | -0.815812 | 7.632561e-52 | -8.615850e-47 |
| Msa0101840 | Msa0282590 | 0.801643 | 8.173980e-49 | -8.615850e-47 |
| Msa0101840 | Msa0282600 | 0.801563 | 8.486657e-49 | -8.615850e-47 |
| Msa0101840 | Msa0389360 | 0.836569 | 8.664885e-57 | -8.615850e-47 |
| Msa0101840 | Msa0438050 | 0.959556 | 1.425450e-117 | -8.615850e-47 |
| Msa0101840 | Msa0467740 | -0.804144 | 2.486788e-49 | -8.615850e-47 |
| Msa0101840 | Msa0514130 | -0.803662 | 3.132376e-49 | -8.615850e-47 |
| Msa0101840 | Msa0527250 | 0.807878 | 4.076974e-50 | -8.615850e-47 |
| Msa0101840 | Msa0543900 | 0.831421 | 1.685120e-55 | -8.615850e-47 |
| Msa0101840 | Msa0547960 | 0.827060 | 1.926894e-54 | -8.615850e-47 |
| Msa0101840 | Msa0553460 | 0.837411 | 5.282124e-57 | -8.615850e-47 |
| Msa0101840 | Msa0558690 | 0.809827 | 1.561043e-50 | -8.615850e-47 |
| Msa0101840 | Msa0558700 | 0.800588 | 1.343545e-48 | -8.615850e-47 |
| Msa0101840 | Msa0564510 | 0.805742 | 1.152409e-49 | -8.615850e-47 |
| Msa0101840 | Msa0599770 | 0.835560 | 1.563374e-56 | -8.615850e-47 |
| Msa0101840 | Msa0607540 | 0.837483 | 5.061335e-57 | -8.615850e-47 |
| Msa0101840 | Msa0610890 | 0.835619 | 1.509717e-56 | -8.615850e-47 |
| Msa0101840 | Msa0640380 | 0.840166 | 1.023992e-57 | -8.615850e-47 |
| Msa0101840 | Msa0641020 | 0.804365 | 2.237153e-49 | -8.615850e-47 |
| Msa0101840 | Msa0647830 | 0.843379 | 1.452531e-58 | -8.615850e-47 |
| Msa0101840 | Msa0650290 | 0.887525 | 1.322251e-72 | -8.615850e-47 |
| Msa0101840 | Msa0660870 | 0.831797 | 1.361603e-55 | -8.615850e-47 |
| Msa0101840 | Msa0678820 | 0.841383 | 4.911740e-58 | -8.615850e-47 |
| Msa0101840 | Msa0690440 | 0.845227 | 4.630802e-59 | -8.615850e-47 |
| Msa0101840 | Msa0692200 | 0.851730 | 7.335099e-61 | -8.615850e-47 |
| Msa0101840 | Msa0716750 | 0.818145 | 2.283908e-52 | -8.615850e-47 |
| Msa0101840 | Msa0724550 | 0.805047 | 1.611751e-49 | -8.615850e-47 |
| Msa0101840 | Msa0765130 | 0.800232 | 1.587166e-48 | -8.615850e-47 |
| Msa0101840 | Msa0799280 | 0.825862 | 3.717990e-54 | -8.615850e-47 |
| Msa0101840 | Msa0839230 | 0.801133 | 1.039574e-48 | -8.615850e-47 |
| Msa0101840 | Msa0840380 | 0.800238 | 1.583217e-48 | -8.615850e-47 |
| Msa0101840 | Msa0843280 | 0.805096 | 1.574035e-49 | -8.615850e-47 |
| Msa0101840 | Msa0885190 | 0.803209 | 3.888244e-49 | -8.615850e-47 |
| Msa0101840 | Msa0886330 | -0.804885 | 1.742641e-49 | -8.615850e-47 |
| Msa0101840 | Msa0996830 | -0.818973 | 1.481848e-52 | -8.615850e-47 |
| Msa0101840 | Msa1001200 | 0.819730 | 9.960534e-53 | -8.615850e-47 |
| Msa0101840 | Msa1037710 | 0.812592 | 3.922967e-51 | -8.615850e-47 |
| Msa0101840 | Msa1038140 | 0.816481 | 5.409457e-52 | -8.615850e-47 |
| Msa0101840 | Msa1041730 | 0.805182 | 1.510216e-49 | -8.615850e-47 |
| Msa0101840 | Msa1054410 | 0.830491 | 2.850440e-55 | -8.615850e-47 |
| Msa0101840 | Msa1100170 | 0.801704 | 7.939837e-49 | -8.615850e-47 |
| Msa0101840 | Msa1125080 | 0.808132 | 3.599329e-50 | -8.615850e-47 |
| Msa0101840 | Msa1167220 | 0.816553 | 5.212866e-52 | -8.615850e-47 |
| Msa0101840 | Msa1199550 | 0.813728 | 2.210347e-51 | -8.615850e-47 |
| Msa0101840 | Msa1208180 | 0.818250 | 2.162309e-52 | -8.615850e-47 |
| Msa0101840 | Msa1208340 | 0.837068 | 6.463643e-57 | -8.615850e-47 |
| Msa0101840 | Msa1279220 | 0.813062 | 3.096091e-51 | -8.615850e-47 |
| Msa0101840 | Msa1298260 | 0.800518 | 1.387847e-48 | -8.615850e-47 |
| Msa0101840 | Msa1328690 | 0.818444 | 1.953763e-52 | -8.615850e-47 |
| Msa0101840 | Msa1339450 | 0.811459 | 6.926752e-51 | -8.615850e-47 |
| Msa0101840 | Msa1371580 | 0.808166 | 3.539315e-50 | -8.615850e-47 |
| Msa0101840 | Msa1377070 | 0.974737 | 1.100283e-138 | -8.615850e-47 |
| Msa0101840 | Msa1378230 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0101840 | Msa1379710 | 0.803116 | 4.065329e-49 | -8.615850e-47 |
| Msa0101840 | Msa1438820 | 0.846139 | 2.620605e-59 | -8.615850e-47 |
| Msa0101840 | Msa1445250 | 0.802356 | 5.833814e-49 | -8.615850e-47 |
| Msa0101840 | Msa1454860 | 0.815045 | 1.130379e-51 | -8.615850e-47 |
| Msa0101840 | Msa1458550 | 0.813068 | 3.085614e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101840 | MtrunA17_Chr1g0153981 | 87.348 | 411 | 6 | 1 | 1 | 365 | 414 | 824 | 0.0 | 715 |
| Msa0101840 | MtrunA17_Chr1g0153991 | 67.797 | 413 | 85 | 2 | 1 | 365 | 411 | 823 | 0.0 | 559 |
| Msa0101840 | MtrunA17_Chr8g0374541 | 31.905 | 420 | 216 | 8 | 12 | 363 | 399 | 816 | 1.43e-64 | 219 |
| Msa0101840 | MtrunA17_Chr8g0374291 | 34.085 | 399 | 213 | 5 | 14 | 363 | 414 | 811 | 2.05e-59 | 205 |
| Msa0101840 | MtrunA17_Chr5g0402681 | 31.776 | 428 | 215 | 9 | 10 | 363 | 387 | 811 | 3.43e-59 | 204 |
| Msa0101840 | MtrunA17_Chr5g0402671 | 32.326 | 430 | 210 | 9 | 10 | 363 | 400 | 824 | 4.36e-59 | 204 |
| Msa0101840 | MtrunA17_Chr5g0402721 | 32.614 | 417 | 214 | 10 | 10 | 363 | 388 | 800 | 1.01e-58 | 203 |
| Msa0101840 | MtrunA17_Chr5g0402771 | 31.542 | 428 | 216 | 8 | 10 | 363 | 407 | 831 | 1.33e-58 | 203 |
| Msa0101840 | MtrunA17_Chr8g0374491 | 29.621 | 422 | 221 | 8 | 12 | 363 | 36 | 451 | 6.35e-56 | 189 |
| Msa0101840 | MtrunA17_Chr8g0374351 | 32.394 | 426 | 204 | 12 | 13 | 363 | 337 | 753 | 2.30e-55 | 193 |
| Msa0101840 | MtrunA17_Chr8g0374471 | 29.858 | 422 | 220 | 8 | 12 | 363 | 389 | 804 | 9.52e-55 | 192 |
| Msa0101840 | MtrunA17_Chr8g0374301 | 32.195 | 410 | 228 | 5 | 4 | 364 | 411 | 819 | 4.32e-54 | 190 |
| Msa0101840 | MtrunA17_Chr8g0374561 | 31.313 | 396 | 212 | 8 | 12 | 355 | 410 | 797 | 8.84e-52 | 184 |
| Msa0101840 | MtrunA17_Chr8g0374461 | 30.660 | 424 | 213 | 9 | 13 | 363 | 353 | 768 | 1.44e-49 | 177 |
| Msa0101840 | MtrunA17_Chr8g0374511 | 28.671 | 429 | 216 | 11 | 12 | 363 | 365 | 780 | 3.17e-47 | 171 |
| Msa0101840 | MtrunA17_Chr8g0374551 | 30.303 | 396 | 218 | 8 | 12 | 355 | 402 | 791 | 4.12e-47 | 171 |
| Msa0101840 | MtrunA17_Chr8g0374531 | 27.316 | 421 | 232 | 9 | 12 | 363 | 391 | 806 | 2.02e-46 | 169 |
| Msa0101840 | MtrunA17_Chr7g0223441 | 34.711 | 121 | 78 | 1 | 233 | 353 | 2 | 121 | 7.74e-22 | 90.1 |
| Msa0101840 | MtrunA17_Chr7g0223451 | 32.824 | 131 | 71 | 3 | 84 | 197 | 55 | 185 | 1.26e-14 | 71.6 |
| Msa0101840 | MtrunA17_Chr6g0479701 | 26.592 | 267 | 151 | 12 | 79 | 327 | 502 | 741 | 2.71e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101840 | AT4G33300.2 | 51.574 | 413 | 151 | 3 | 1 | 365 | 405 | 816 | 1.31e-138 | 414 |
| Msa0101840 | AT4G33300.1 | 51.574 | 413 | 151 | 3 | 1 | 365 | 405 | 816 | 1.31e-138 | 414 |
| Msa0101840 | AT5G04720.1 | 45.366 | 410 | 175 | 3 | 4 | 365 | 403 | 811 | 8.18e-123 | 373 |
| Msa0101840 | AT5G47280.1 | 45.122 | 410 | 176 | 3 | 4 | 365 | 215 | 623 | 1.31e-121 | 364 |
| Msa0101840 | AT1G33560.1 | 47.087 | 412 | 170 | 3 | 1 | 365 | 377 | 787 | 1.31e-121 | 369 |
| Msa0101840 | AT5G66910.1 | 32.289 | 415 | 218 | 10 | 4 | 363 | 406 | 812 | 6.10e-54 | 190 |
| Msa0101840 | AT5G66900.1 | 32.673 | 404 | 211 | 10 | 4 | 355 | 404 | 798 | 1.68e-53 | 189 |
| Msa0101840 | AT5G66900.2 | 32.673 | 404 | 211 | 10 | 4 | 355 | 452 | 846 | 2.55e-53 | 189 |
| Msa0101840 | AT5G66890.1 | 31.095 | 402 | 214 | 11 | 4 | 351 | 8 | 400 | 1.54e-48 | 169 |
| Msa0101840 | AT1G69550.1 | 31.073 | 177 | 105 | 4 | 166 | 335 | 924 | 1090 | 3.08e-14 | 74.7 |
| Msa0101840 | AT1G69550.1 | 31.638 | 177 | 104 | 4 | 166 | 335 | 900 | 1066 | 4.10e-13 | 71.2 |
| Msa0101840 | AT1G69550.1 | 30.508 | 177 | 106 | 4 | 166 | 335 | 876 | 1042 | 5.18e-13 | 71.2 |
| Msa0101840 | AT1G69550.1 | 31.638 | 177 | 103 | 5 | 166 | 335 | 972 | 1137 | 9.30e-12 | 67.0 |
| Msa0101840 | AT1G69550.1 | 29.381 | 194 | 109 | 5 | 166 | 335 | 996 | 1185 | 5.37e-11 | 64.7 |
| Msa0101840 | AT1G69550.1 | 29.825 | 171 | 105 | 4 | 166 | 332 | 1068 | 1227 | 8.23e-11 | 64.3 |
| Msa0101840 | AT5G66900.3 | 35.036 | 137 | 79 | 4 | 4 | 137 | 452 | 581 | 1.18e-13 | 72.8 |
| Msa0101840 | AT3G04220.1 | 30.841 | 107 | 74 | 0 | 220 | 326 | 731 | 837 | 9.08e-13 | 70.1 |
| Msa0101840 | AT3G04220.1 | 28.324 | 173 | 105 | 5 | 166 | 331 | 707 | 867 | 3.34e-11 | 65.5 |
| Msa0101840 | AT3G04220.3 | 30.841 | 107 | 74 | 0 | 220 | 326 | 760 | 866 | 9.61e-13 | 70.1 |
| Msa0101840 | AT3G04220.3 | 28.324 | 173 | 105 | 5 | 166 | 331 | 736 | 896 | 3.89e-11 | 65.1 |
| Msa0101840 | AT5G11250.3 | 32.727 | 165 | 93 | 4 | 168 | 325 | 611 | 764 | 1.25e-12 | 69.7 |
| Msa0101840 | AT5G11250.1 | 32.727 | 165 | 93 | 4 | 168 | 325 | 611 | 764 | 1.25e-12 | 69.7 |
| Msa0101840 | AT5G11250.2 | 32.727 | 165 | 93 | 4 | 168 | 325 | 693 | 846 | 1.32e-12 | 69.7 |
| Msa0101840 | AT3G44630.2 | 30.588 | 170 | 108 | 3 | 166 | 333 | 755 | 916 | 1.45e-11 | 66.6 |
| Msa0101840 | AT3G44630.1 | 30.588 | 170 | 108 | 3 | 166 | 333 | 755 | 916 | 1.45e-11 | 66.6 |
| Msa0101840 | AT3G44630.4 | 30.588 | 170 | 108 | 3 | 166 | 333 | 755 | 916 | 1.45e-11 | 66.6 |
| Msa0101840 | AT3G44630.3 | 30.588 | 170 | 108 | 3 | 166 | 333 | 755 | 916 | 1.68e-11 | 66.2 |
| Msa0101840 | AT3G25510.2 | 30.508 | 177 | 105 | 4 | 166 | 335 | 570 | 735 | 6.12e-11 | 64.7 |
| Msa0101840 | AT3G25510.1 | 30.508 | 177 | 105 | 4 | 166 | 335 | 570 | 735 | 6.12e-11 | 64.7 |
Find 62 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTAGAGCTCTCAAATT+TGG | 0.198230 | 1_3:+8496967 | None:intergenic |
| TTCAATGAAATAGCAGATTT+TGG | 0.204325 | 1_3:+8496401 | None:intergenic |
| GAACAACTTCCTGTTGAATT+AGG | 0.221616 | 1_3:-8496626 | Msa0101840:CDS |
| TTGTGTCTCAACCACTCTTT+TGG | 0.235777 | 1_3:+8497250 | None:intergenic |
| AAAGTTTCCATCCCTCAATT+TGG | 0.261702 | 1_3:-8496859 | Msa0101840:CDS |
| GATCATAAATTTCACATCTA+AGG | 0.263048 | 1_3:-8497022 | Msa0101840:CDS |
| GGGAGTCCTTTCTCTCGTTT+TGG | 0.283696 | 1_3:+8497271 | None:intergenic |
| ACTCTTTGATATCTTCCTTT+AGG | 0.293617 | 1_3:+8497683 | None:intergenic |
| CTATTTCATTGAAGTCTCTT+AGG | 0.296603 | 1_3:-8496391 | Msa0101840:CDS |
| ATTCGGTGAGACTCAAGTTT+TGG | 0.317393 | 1_3:+8496660 | None:intergenic |
| TCTCACCGAATGTCACAATT+TGG | 0.333281 | 1_3:-8496648 | Msa0101840:CDS |
| TTATTGCCATTCTTTCAATT+AGG | 0.337462 | 1_3:+8497716 | None:intergenic |
| GATACTTGAATATGAACATT+TGG | 0.340202 | 1_3:+8496311 | None:intergenic |
| ACTAGTTTACCAATCTCTTC+AGG | 0.357302 | 1_3:+8496473 | None:intergenic |
| ATGATCAGAACTTCAGCCTT+AGG | 0.394151 | 1_3:+8497039 | None:intergenic |
| TGAGGGAATGCTGTATGATT+AGG | 0.402959 | 1_3:-8496430 | Msa0101840:CDS |
| ATAACGGACACGCGTATAAC+CGG | 0.403578 | 1_3:+8496579 | None:intergenic |
| CATGAGATTCTCCAATACTT+TGG | 0.404274 | 1_3:+8497746 | None:intergenic |
| CATCTTTCTCATCAATATCA+TGG | 0.409451 | 1_3:+8497584 | None:intergenic |
| TTACATTGTAGGTGAAATGA+AGG | 0.427172 | 1_3:-8497088 | Msa0101840:intron |
| GAAACAATTTGAGCTTCAAA+TGG | 0.444460 | 1_3:+8497220 | None:intergenic |
| GATTGGTAAACTAGTTAGCT+TGG | 0.450698 | 1_3:-8496465 | Msa0101840:CDS |
| AATCAACCTAATTGAAAGAA+TGG | 0.452666 | 1_3:-8497722 | Msa0101840:exon |
| TTGTTCCAAATTGTGACATT+CGG | 0.455670 | 1_3:+8496643 | None:intergenic |
| CTTAGCGCGCCTAATTCAAC+AGG | 0.463736 | 1_3:+8496617 | None:intergenic |
| GTGTAAACTTGAATTTCCTA+AGG | 0.474567 | 1_3:-8497055 | Msa0101840:CDS |
| TTGAATATGAACATTTGGCT+TGG | 0.475607 | 1_3:+8496316 | None:intergenic |
| ATGAGAATGCCTCCAAATTG+AGG | 0.482059 | 1_3:+8496847 | None:intergenic |
| ATTTGTGATGAGGAAGTGTT+TGG | 0.483395 | 1_3:-8496362 | Msa0101840:CDS |
| GGCATTCTCATGGAAAACTT+AGG | 0.485804 | 1_3:-8496835 | Msa0101840:CDS |
| TAGATGCTCTCATCAATATG+TGG | 0.497821 | 1_3:-8497615 | Msa0101840:CDS |
| GCATTCTCATGGAAAACTTA+GGG | 0.506416 | 1_3:-8496834 | Msa0101840:CDS |
| GTTTCCATCCCTCAATTTGG+AGG | 0.506577 | 1_3:-8496856 | Msa0101840:CDS |
| TTATCTCAAGGCCAAAGTAT+TGG | 0.506867 | 1_3:-8497757 | Msa0101840:five_prime_UTR |
| TCAATTTGGAGGCATTCTCA+TGG | 0.509872 | 1_3:-8496845 | Msa0101840:CDS |
| TGAGAATGCCTCCAAATTGA+GGG | 0.513851 | 1_3:+8496848 | None:intergenic |
| ATGAGGAAGTGTTTGGTATG+TGG | 0.519732 | 1_3:-8496355 | Msa0101840:CDS |
| TGTAGGTGAAATGAAGGAAA+GGG | 0.522335 | 1_3:-8497082 | Msa0101840:intron |
| GTTATGCCAAAACGAGAGAA+AGG | 0.524349 | 1_3:-8497277 | Msa0101840:CDS |
| CTTGGAAAAGATTGACATGA+GGG | 0.548288 | 1_3:-8496447 | Msa0101840:CDS |
| GTGAAATGAAGGAAAGGGAT+TGG | 0.550751 | 1_3:-8497077 | Msa0101840:CDS |
| TTGTAGGTGAAATGAAGGAA+AGG | 0.551543 | 1_3:-8497083 | Msa0101840:intron |
| AATAAGTATCAACTACCTAA+AGG | 0.566013 | 1_3:-8497698 | Msa0101840:CDS |
| CGAGTCATGTCACAAACGCT+AGG | 0.589205 | 1_3:+8496542 | None:intergenic |
| AGATGCTCTCATCAATATGT+GGG | 0.589960 | 1_3:-8497614 | Msa0101840:CDS |
| TGGCAAACTTGAGAAGCCTG+TGG | 0.604919 | 1_3:-8496888 | Msa0101840:CDS |
| CAAATTGTTTCAATTCACAC+AGG | 0.605954 | 1_3:-8497208 | Msa0101840:intron |
| TAAGATCTCTAGAGATACTC+CGG | 0.608580 | 1_3:-8496598 | Msa0101840:CDS |
| ACTTGATCTATCAGTGCTGG+TGG | 0.615020 | 1_3:-8497406 | Msa0101840:intron |
| TAGGCTTGTAATTTGTGATG+AGG | 0.615043 | 1_3:-8496372 | Msa0101840:CDS |
| TGTTAAAACAGGTTATCTCA+AGG | 0.618107 | 1_3:-8497769 | Msa0101840:five_prime_UTR |
| AATGCCTCCAAATTGAGGGA+TGG | 0.626787 | 1_3:+8496852 | None:intergenic |
| GCTTGGAAAAGATTGACATG+AGG | 0.627984 | 1_3:-8496448 | Msa0101840:CDS |
| GATGACTCAAATTAACTGCA+AGG | 0.638388 | 1_3:+8497329 | None:intergenic |
| AGAAAGGACTCCCAAAAGAG+TGG | 0.643746 | 1_3:-8497261 | Msa0101840:CDS |
| TGAAAACTGAAACATTGTGA+AGG | 0.650959 | 1_3:+8496917 | None:intergenic |
| GTCATGTCACAAACGCTAGG+AGG | 0.654064 | 1_3:+8496545 | None:intergenic |
| GTACCGTGCTTCTTTCACCA+AGG | 0.672292 | 1_3:+8497519 | None:intergenic |
| TCACCTTGGTGAAAGAAGCA+CGG | 0.677428 | 1_3:-8497522 | Msa0101840:intron |
| AGACTTGTGTGCATTCCCTG+AGG | 0.679758 | 1_3:-8497653 | Msa0101840:CDS |
| TATGTGGAAAGATGTTGAGA+AGG | 0.701600 | 1_3:-8496339 | Msa0101840:CDS |
| ATATTGATGAGAGCATCTAG+AGG | 0.718853 | 1_3:+8497619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGATTAATAACAATCTAG+AGG | - | chr1_3:8497260-8497279 | Msa0101840:CDS | 20.0% |
| !! | AAGATTAATAACAATCTAGA+GGG | - | chr1_3:8497261-8497280 | Msa0101840:CDS | 20.0% |
| !! | TAAGATTAATAACAATCTAG+AGG | - | chr1_3:8497260-8497279 | Msa0101840:CDS | 20.0% |
| !! | AAGATTAATAACAATCTAGA+GGG | - | chr1_3:8497261-8497280 | Msa0101840:CDS | 20.0% |
| ! | AATCAACCTAATTGAAAGAA+TGG | - | chr1_3:8496329-8496348 | Msa0101840:CDS | 25.0% |
| ! | TTATTGCCATTCTTTCAATT+AGG | + | chr1_3:8496338-8496357 | None:intergenic | 25.0% |
| ! | AATAAGTATCAACTACCTAA+AGG | - | chr1_3:8496353-8496372 | Msa0101840:CDS | 25.0% |
| !! | TGTGATGAATTTTACATTGT+AGG | - | chr1_3:8496952-8496971 | Msa0101840:CDS | 25.0% |
| ! | GATCATAAATTTCACATCTA+AGG | - | chr1_3:8497029-8497048 | Msa0101840:CDS | 25.0% |
| !! | TTTGGCATTTTATCTATGAA+AGG | + | chr1_3:8497069-8497088 | None:intergenic | 25.0% |
| !! | TGTTTCAGTTTTCAACAATT+TGG | - | chr1_3:8497143-8497162 | Msa0101840:intron | 25.0% |
| !! | TTCAATGAAATAGCAGATTT+TGG | + | chr1_3:8497653-8497672 | None:intergenic | 25.0% |
| ! | GATACTTGAATATGAACATT+TGG | + | chr1_3:8497743-8497762 | None:intergenic | 25.0% |
| ! | AATCAACCTAATTGAAAGAA+TGG | - | chr1_3:8496329-8496348 | Msa0101840:CDS | 25.0% |
| ! | TTATTGCCATTCTTTCAATT+AGG | + | chr1_3:8496338-8496357 | None:intergenic | 25.0% |
| ! | AATAAGTATCAACTACCTAA+AGG | - | chr1_3:8496353-8496372 | Msa0101840:CDS | 25.0% |
| !! | TGTGATGAATTTTACATTGT+AGG | - | chr1_3:8496952-8496971 | Msa0101840:CDS | 25.0% |
| ! | GATCATAAATTTCACATCTA+AGG | - | chr1_3:8497029-8497048 | Msa0101840:CDS | 25.0% |
| !! | TTTGGCATTTTATCTATGAA+AGG | + | chr1_3:8497069-8497088 | None:intergenic | 25.0% |
| !! | TGTTTCAGTTTTCAACAATT+TGG | - | chr1_3:8497143-8497162 | Msa0101840:intron | 25.0% |
| !! | TTCAATGAAATAGCAGATTT+TGG | + | chr1_3:8497653-8497672 | None:intergenic | 25.0% |
| ! | GATACTTGAATATGAACATT+TGG | + | chr1_3:8497743-8497762 | None:intergenic | 25.0% |
| TGTTAAAACAGGTTATCTCA+AGG | - | chr1_3:8496282-8496301 | Msa0101840:CDS | 30.0% | |
| ACTCTTTGATATCTTCCTTT+AGG | + | chr1_3:8496371-8496390 | None:intergenic | 30.0% | |
| CATCTTTCTCATCAATATCA+TGG | + | chr1_3:8496470-8496489 | None:intergenic | 30.0% | |
| ! | CAAGGTGAGAAGATTTTTAT+TGG | + | chr1_3:8496517-8496536 | None:intergenic | 30.0% |
| CAATAAAAATCTTCTCACCT+TGG | - | chr1_3:8496515-8496534 | Msa0101840:CDS | 30.0% | |
| GAAACAATTTGAGCTTCAAA+TGG | + | chr1_3:8496834-8496853 | None:intergenic | 30.0% | |
| CAAATTGTTTCAATTCACAC+AGG | - | chr1_3:8496843-8496862 | Msa0101840:CDS | 30.0% | |
| TTACATTGTAGGTGAAATGA+AGG | - | chr1_3:8496963-8496982 | Msa0101840:CDS | 30.0% | |
| GTGTAAACTTGAATTTCCTA+AGG | - | chr1_3:8496996-8497015 | Msa0101840:CDS | 30.0% | |
| ACTATTAGAGCTCTCAAATT+TGG | + | chr1_3:8497087-8497106 | None:intergenic | 30.0% | |
| TGAAAACTGAAACATTGTGA+AGG | + | chr1_3:8497137-8497156 | None:intergenic | 30.0% | |
| TTGTTCCAAATTGTGACATT+CGG | + | chr1_3:8497411-8497430 | None:intergenic | 30.0% | |
| CTATTTCATTGAAGTCTCTT+AGG | - | chr1_3:8497660-8497679 | Msa0101840:CDS | 30.0% | |
| TTGAATATGAACATTTGGCT+TGG | + | chr1_3:8497738-8497757 | None:intergenic | 30.0% | |
| !!! | ATCAGAACAGTGTTTTGATT+TGG | - | chr1_3:8497760-8497779 | Msa0101840:five_prime_UTR | 30.0% |
| !!! | AACAGTGTTTTGATTTGGAA+TGG | - | chr1_3:8497765-8497784 | Msa0101840:five_prime_UTR | 30.0% |
| TGTTAAAACAGGTTATCTCA+AGG | - | chr1_3:8496282-8496301 | Msa0101840:CDS | 30.0% | |
| ACTCTTTGATATCTTCCTTT+AGG | + | chr1_3:8496371-8496390 | None:intergenic | 30.0% | |
| CATCTTTCTCATCAATATCA+TGG | + | chr1_3:8496470-8496489 | None:intergenic | 30.0% | |
| ! | CAAGGTGAGAAGATTTTTAT+TGG | + | chr1_3:8496517-8496536 | None:intergenic | 30.0% |
| CAATAAAAATCTTCTCACCT+TGG | - | chr1_3:8496515-8496534 | Msa0101840:CDS | 30.0% | |
| GAAACAATTTGAGCTTCAAA+TGG | + | chr1_3:8496834-8496853 | None:intergenic | 30.0% | |
| CAAATTGTTTCAATTCACAC+AGG | - | chr1_3:8496843-8496862 | Msa0101840:CDS | 30.0% | |
| TTACATTGTAGGTGAAATGA+AGG | - | chr1_3:8496963-8496982 | Msa0101840:CDS | 30.0% | |
| GTGTAAACTTGAATTTCCTA+AGG | - | chr1_3:8496996-8497015 | Msa0101840:CDS | 30.0% | |
| ACTATTAGAGCTCTCAAATT+TGG | + | chr1_3:8497087-8497106 | None:intergenic | 30.0% | |
| TGAAAACTGAAACATTGTGA+AGG | + | chr1_3:8497137-8497156 | None:intergenic | 30.0% | |
| TTGTTCCAAATTGTGACATT+CGG | + | chr1_3:8497411-8497430 | None:intergenic | 30.0% | |
| CTATTTCATTGAAGTCTCTT+AGG | - | chr1_3:8497660-8497679 | Msa0101840:CDS | 30.0% | |
| TTGAATATGAACATTTGGCT+TGG | + | chr1_3:8497738-8497757 | None:intergenic | 30.0% | |
| !!! | ATCAGAACAGTGTTTTGATT+TGG | - | chr1_3:8497760-8497779 | Msa0101840:five_prime_UTR | 30.0% |
| !!! | AACAGTGTTTTGATTTGGAA+TGG | - | chr1_3:8497765-8497784 | Msa0101840:five_prime_UTR | 30.0% |
| TTATCTCAAGGCCAAAGTAT+TGG | - | chr1_3:8496294-8496313 | Msa0101840:CDS | 35.0% | |
| CATGAGATTCTCCAATACTT+TGG | + | chr1_3:8496308-8496327 | None:intergenic | 35.0% | |
| !!! | GAGGTATTTTTTTGTCCTCA+GGG | + | chr1_3:8496416-8496435 | None:intergenic | 35.0% |
| !!! | AGAGGTATTTTTTTGTCCTC+AGG | + | chr1_3:8496417-8496436 | None:intergenic | 35.0% |
| !! | ATATTGATGAGAGCATCTAG+AGG | + | chr1_3:8496435-8496454 | None:intergenic | 35.0% |
| TAGATGCTCTCATCAATATG+TGG | - | chr1_3:8496436-8496455 | Msa0101840:CDS | 35.0% | |
| AGATGCTCTCATCAATATGT+GGG | - | chr1_3:8496437-8496456 | Msa0101840:CDS | 35.0% | |
| !! | TAGTTAGTTTGCAATTGCTG+AGG | - | chr1_3:8496591-8496610 | Msa0101840:CDS | 35.0% |
| ATAACTTGATCTATCAGTGC+TGG | - | chr1_3:8496642-8496661 | Msa0101840:CDS | 35.0% | |
| GATGACTCAAATTAACTGCA+AGG | + | chr1_3:8496725-8496744 | None:intergenic | 35.0% | |
| AAATTCATCACACACGTGAA+GGG | + | chr1_3:8496944-8496963 | None:intergenic | 35.0% | |
| AAAATTCATCACACACGTGA+AGG | + | chr1_3:8496945-8496964 | None:intergenic | 35.0% | |
| TTGTAGGTGAAATGAAGGAA+AGG | - | chr1_3:8496968-8496987 | Msa0101840:CDS | 35.0% | |
| TGTAGGTGAAATGAAGGAAA+GGG | - | chr1_3:8496969-8496988 | Msa0101840:CDS | 35.0% | |
| ! | GGCATTTTATCTATGAAAGG+AGG | + | chr1_3:8497066-8497085 | None:intergenic | 35.0% |
| AAAGTTTCCATCCCTCAATT+TGG | - | chr1_3:8497192-8497211 | Msa0101840:intron | 35.0% | |
| GCATTCTCATGGAAAACTTA+GGG | - | chr1_3:8497217-8497236 | Msa0101840:CDS | 35.0% | |
| TAACAATCTAGAGGGTAAAG+AGG | - | chr1_3:8497269-8497288 | Msa0101840:CDS | 35.0% | |
| TGTATCCTACAAATGCTTGA+GGG | + | chr1_3:8497365-8497384 | None:intergenic | 35.0% | |
| TTGTATCCTACAAATGCTTG+AGG | + | chr1_3:8497366-8497385 | None:intergenic | 35.0% | |
| GAACAACTTCCTGTTGAATT+AGG | - | chr1_3:8497425-8497444 | Msa0101840:intron | 35.0% | |
| ! | TAAGATCTCTAGAGATACTC+CGG | - | chr1_3:8497453-8497472 | Msa0101840:intron | 35.0% |
| !!! | GGAGGAAGTGTTTTCAATAA+CGG | + | chr1_3:8497491-8497510 | None:intergenic | 35.0% |
| ! | TCATGTTTTCCTGAAGAGAT+TGG | - | chr1_3:8497569-8497588 | Msa0101840:CDS | 35.0% |
| ! | ACTAGTTTACCAATCTCTTC+AGG | + | chr1_3:8497581-8497600 | None:intergenic | 35.0% |
| GATTGGTAAACTAGTTAGCT+TGG | - | chr1_3:8497586-8497605 | Msa0101840:CDS | 35.0% | |
| CTTGGAAAAGATTGACATGA+GGG | - | chr1_3:8497604-8497623 | Msa0101840:CDS | 35.0% | |
| ! | TAGGCTTGTAATTTGTGATG+AGG | - | chr1_3:8497679-8497698 | Msa0101840:CDS | 35.0% |
| !! | ATTTGTGATGAGGAAGTGTT+TGG | - | chr1_3:8497689-8497708 | Msa0101840:CDS | 35.0% |
| TATGTGGAAAGATGTTGAGA+AGG | - | chr1_3:8497712-8497731 | Msa0101840:exon | 35.0% | |
| TTATCTCAAGGCCAAAGTAT+TGG | - | chr1_3:8496294-8496313 | Msa0101840:CDS | 35.0% | |
| CATGAGATTCTCCAATACTT+TGG | + | chr1_3:8496308-8496327 | None:intergenic | 35.0% | |
| !!! | GAGGTATTTTTTTGTCCTCA+GGG | + | chr1_3:8496416-8496435 | None:intergenic | 35.0% |
| !!! | AGAGGTATTTTTTTGTCCTC+AGG | + | chr1_3:8496417-8496436 | None:intergenic | 35.0% |
| !! | ATATTGATGAGAGCATCTAG+AGG | + | chr1_3:8496435-8496454 | None:intergenic | 35.0% |
| TAGATGCTCTCATCAATATG+TGG | - | chr1_3:8496436-8496455 | Msa0101840:CDS | 35.0% | |
| AGATGCTCTCATCAATATGT+GGG | - | chr1_3:8496437-8496456 | Msa0101840:CDS | 35.0% | |
| !! | TAGTTAGTTTGCAATTGCTG+AGG | - | chr1_3:8496591-8496610 | Msa0101840:CDS | 35.0% |
| ATAACTTGATCTATCAGTGC+TGG | - | chr1_3:8496642-8496661 | Msa0101840:CDS | 35.0% | |
| GATGACTCAAATTAACTGCA+AGG | + | chr1_3:8496725-8496744 | None:intergenic | 35.0% | |
| AAATTCATCACACACGTGAA+GGG | + | chr1_3:8496944-8496963 | None:intergenic | 35.0% | |
| AAAATTCATCACACACGTGA+AGG | + | chr1_3:8496945-8496964 | None:intergenic | 35.0% | |
| TTGTAGGTGAAATGAAGGAA+AGG | - | chr1_3:8496968-8496987 | Msa0101840:CDS | 35.0% | |
| TGTAGGTGAAATGAAGGAAA+GGG | - | chr1_3:8496969-8496988 | Msa0101840:CDS | 35.0% | |
| ! | GGCATTTTATCTATGAAAGG+AGG | + | chr1_3:8497066-8497085 | None:intergenic | 35.0% |
| AAAGTTTCCATCCCTCAATT+TGG | - | chr1_3:8497192-8497211 | Msa0101840:intron | 35.0% | |
| GCATTCTCATGGAAAACTTA+GGG | - | chr1_3:8497217-8497236 | Msa0101840:CDS | 35.0% | |
| TAACAATCTAGAGGGTAAAG+AGG | - | chr1_3:8497269-8497288 | Msa0101840:CDS | 35.0% | |
| TGTATCCTACAAATGCTTGA+GGG | + | chr1_3:8497365-8497384 | None:intergenic | 35.0% | |
| TTGTATCCTACAAATGCTTG+AGG | + | chr1_3:8497366-8497385 | None:intergenic | 35.0% | |
| GAACAACTTCCTGTTGAATT+AGG | - | chr1_3:8497425-8497444 | Msa0101840:intron | 35.0% | |
| ! | TAAGATCTCTAGAGATACTC+CGG | - | chr1_3:8497453-8497472 | Msa0101840:intron | 35.0% |
| !!! | GGAGGAAGTGTTTTCAATAA+CGG | + | chr1_3:8497491-8497510 | None:intergenic | 35.0% |
| ! | TCATGTTTTCCTGAAGAGAT+TGG | - | chr1_3:8497569-8497588 | Msa0101840:CDS | 35.0% |
| ! | ACTAGTTTACCAATCTCTTC+AGG | + | chr1_3:8497581-8497600 | None:intergenic | 35.0% |
| GATTGGTAAACTAGTTAGCT+TGG | - | chr1_3:8497586-8497605 | Msa0101840:CDS | 35.0% | |
| CTTGGAAAAGATTGACATGA+GGG | - | chr1_3:8497604-8497623 | Msa0101840:CDS | 35.0% | |
| ! | TAGGCTTGTAATTTGTGATG+AGG | - | chr1_3:8497679-8497698 | Msa0101840:CDS | 35.0% |
| !! | ATTTGTGATGAGGAAGTGTT+TGG | - | chr1_3:8497689-8497708 | Msa0101840:CDS | 35.0% |
| TATGTGGAAAGATGTTGAGA+AGG | - | chr1_3:8497712-8497731 | Msa0101840:exon | 35.0% | |
| GTTATGCCAAAACGAGAGAA+AGG | - | chr1_3:8496774-8496793 | Msa0101840:intron | 40.0% | |
| ! | TGTGTCTCAACCACTCTTTT+GGG | + | chr1_3:8496803-8496822 | None:intergenic | 40.0% |
| ! | TTGTGTCTCAACCACTCTTT+TGG | + | chr1_3:8496804-8496823 | None:intergenic | 40.0% |
| GTGAAATGAAGGAAAGGGAT+TGG | - | chr1_3:8496974-8496993 | Msa0101840:CDS | 40.0% | |
| ATGATCAGAACTTCAGCCTT+AGG | + | chr1_3:8497015-8497034 | None:intergenic | 40.0% | |
| !!! | TGGAAACTTTTTCAAGCCAC+AGG | + | chr1_3:8497182-8497201 | None:intergenic | 40.0% |
| TGAGAATGCCTCCAAATTGA+GGG | + | chr1_3:8497206-8497225 | None:intergenic | 40.0% | |
| ATGAGAATGCCTCCAAATTG+AGG | + | chr1_3:8497207-8497226 | None:intergenic | 40.0% | |
| !! | TCAATTTGGAGGCATTCTCA+TGG | - | chr1_3:8497206-8497225 | Msa0101840:intron | 40.0% |
| GGCATTCTCATGGAAAACTT+AGG | - | chr1_3:8497216-8497235 | Msa0101840:CDS | 40.0% | |
| AGAGTGATTTCAGAGAGGTT+AGG | + | chr1_3:8497314-8497333 | None:intergenic | 40.0% | |
| GATCAAGAGTGATTTCAGAG+AGG | + | chr1_3:8497319-8497338 | None:intergenic | 40.0% | |
| !! | ATTCGGTGAGACTCAAGTTT+TGG | + | chr1_3:8497394-8497413 | None:intergenic | 40.0% |
| TCTCACCGAATGTCACAATT+TGG | - | chr1_3:8497403-8497422 | Msa0101840:intron | 40.0% | |
| GCTTGGAAAAGATTGACATG+AGG | - | chr1_3:8497603-8497622 | Msa0101840:CDS | 40.0% | |
| TGAGGGAATGCTGTATGATT+AGG | - | chr1_3:8497621-8497640 | Msa0101840:CDS | 40.0% | |
| !! | ATGAGGAAGTGTTTGGTATG+TGG | - | chr1_3:8497696-8497715 | Msa0101840:CDS | 40.0% |
| TGGAATGGCTTAGTGAGTAA+TGG | - | chr1_3:8497780-8497799 | Msa0101840:five_prime_UTR | 40.0% | |
| GTTATGCCAAAACGAGAGAA+AGG | - | chr1_3:8496774-8496793 | Msa0101840:intron | 40.0% | |
| ! | TGTGTCTCAACCACTCTTTT+GGG | + | chr1_3:8496803-8496822 | None:intergenic | 40.0% |
| ! | TTGTGTCTCAACCACTCTTT+TGG | + | chr1_3:8496804-8496823 | None:intergenic | 40.0% |
| GTGAAATGAAGGAAAGGGAT+TGG | - | chr1_3:8496974-8496993 | Msa0101840:CDS | 40.0% | |
| ATGATCAGAACTTCAGCCTT+AGG | + | chr1_3:8497015-8497034 | None:intergenic | 40.0% | |
| !!! | TGGAAACTTTTTCAAGCCAC+AGG | + | chr1_3:8497182-8497201 | None:intergenic | 40.0% |
| TGAGAATGCCTCCAAATTGA+GGG | + | chr1_3:8497206-8497225 | None:intergenic | 40.0% | |
| ATGAGAATGCCTCCAAATTG+AGG | + | chr1_3:8497207-8497226 | None:intergenic | 40.0% | |
| !! | TCAATTTGGAGGCATTCTCA+TGG | - | chr1_3:8497206-8497225 | Msa0101840:intron | 40.0% |
| GGCATTCTCATGGAAAACTT+AGG | - | chr1_3:8497216-8497235 | Msa0101840:CDS | 40.0% | |
| AGAGTGATTTCAGAGAGGTT+AGG | + | chr1_3:8497314-8497333 | None:intergenic | 40.0% | |
| GATCAAGAGTGATTTCAGAG+AGG | + | chr1_3:8497319-8497338 | None:intergenic | 40.0% | |
| !! | ATTCGGTGAGACTCAAGTTT+TGG | + | chr1_3:8497394-8497413 | None:intergenic | 40.0% |
| TCTCACCGAATGTCACAATT+TGG | - | chr1_3:8497403-8497422 | Msa0101840:intron | 40.0% | |
| GCTTGGAAAAGATTGACATG+AGG | - | chr1_3:8497603-8497622 | Msa0101840:CDS | 40.0% | |
| TGAGGGAATGCTGTATGATT+AGG | - | chr1_3:8497621-8497640 | Msa0101840:CDS | 40.0% | |
| !! | ATGAGGAAGTGTTTGGTATG+TGG | - | chr1_3:8497696-8497715 | Msa0101840:CDS | 40.0% |
| TCACCTTGGTGAAAGAAGCA+CGG | - | chr1_3:8496529-8496548 | Msa0101840:CDS | 45.0% | |
| ! | ACTTGATCTATCAGTGCTGG+TGG | - | chr1_3:8496645-8496664 | Msa0101840:CDS | 45.0% |
| AGAAAGGACTCCCAAAAGAG+TGG | - | chr1_3:8496790-8496809 | Msa0101840:intron | 45.0% | |
| TTCATCACACACAAGCACAC+AGG | + | chr1_3:8496891-8496910 | None:intergenic | 45.0% | |
| GTTTCCATCCCTCAATTTGG+AGG | - | chr1_3:8497195-8497214 | Msa0101840:intron | 45.0% | |
| AATGCCTCCAAATTGAGGGA+TGG | + | chr1_3:8497202-8497221 | None:intergenic | 45.0% | |
| CTTTGCCCTCAAGCATTTGT+AGG | - | chr1_3:8497357-8497376 | Msa0101840:CDS | 45.0% | |
| !! | ATAACGGACACGCGTATAAC+CGG | + | chr1_3:8497475-8497494 | None:intergenic | 45.0% |
| TCACCTTGGTGAAAGAAGCA+CGG | - | chr1_3:8496529-8496548 | Msa0101840:CDS | 45.0% | |
| ! | ACTTGATCTATCAGTGCTGG+TGG | - | chr1_3:8496645-8496664 | Msa0101840:CDS | 45.0% |
| AGAAAGGACTCCCAAAAGAG+TGG | - | chr1_3:8496790-8496809 | Msa0101840:intron | 45.0% | |
| TTCATCACACACAAGCACAC+AGG | + | chr1_3:8496891-8496910 | None:intergenic | 45.0% | |
| GTTTCCATCCCTCAATTTGG+AGG | - | chr1_3:8497195-8497214 | Msa0101840:intron | 45.0% | |
| AATGCCTCCAAATTGAGGGA+TGG | + | chr1_3:8497202-8497221 | None:intergenic | 45.0% | |
| CTTTGCCCTCAAGCATTTGT+AGG | - | chr1_3:8497357-8497376 | Msa0101840:CDS | 45.0% | |
| !! | ATAACGGACACGCGTATAAC+CGG | + | chr1_3:8497475-8497494 | None:intergenic | 45.0% |
| AGACTTGTGTGCATTCCCTG+AGG | - | chr1_3:8496398-8496417 | Msa0101840:CDS | 50.0% | |
| GTACCGTGCTTCTTTCACCA+AGG | + | chr1_3:8496535-8496554 | None:intergenic | 50.0% | |
| ! | GGGAGTCCTTTCTCTCGTTT+TGG | + | chr1_3:8496783-8496802 | None:intergenic | 50.0% |
| ! | ATCACACACGTGAAGGGCAT+CGG | + | chr1_3:8496938-8496957 | None:intergenic | 50.0% |
| TGGCAAACTTGAGAAGCCTG+TGG | - | chr1_3:8497163-8497182 | Msa0101840:intron | 50.0% | |
| CTTAGCGCGCCTAATTCAAC+AGG | + | chr1_3:8497437-8497456 | None:intergenic | 50.0% | |
| GTCATGTCACAAACGCTAGG+AGG | + | chr1_3:8497509-8497528 | None:intergenic | 50.0% | |
| CGAGTCATGTCACAAACGCT+AGG | + | chr1_3:8497512-8497531 | None:intergenic | 50.0% | |
| AGACTTGTGTGCATTCCCTG+AGG | - | chr1_3:8496398-8496417 | Msa0101840:CDS | 50.0% | |
| GTACCGTGCTTCTTTCACCA+AGG | + | chr1_3:8496535-8496554 | None:intergenic | 50.0% | |
| ! | GGGAGTCCTTTCTCTCGTTT+TGG | + | chr1_3:8496783-8496802 | None:intergenic | 50.0% |
| ! | ATCACACACGTGAAGGGCAT+CGG | + | chr1_3:8496938-8496957 | None:intergenic | 50.0% |
| TGGCAAACTTGAGAAGCCTG+TGG | - | chr1_3:8497163-8497182 | Msa0101840:intron | 50.0% | |
| CTTAGCGCGCCTAATTCAAC+AGG | + | chr1_3:8497437-8497456 | None:intergenic | 50.0% | |
| GTCATGTCACAAACGCTAGG+AGG | + | chr1_3:8497509-8497528 | None:intergenic | 50.0% | |
| CGAGTCATGTCACAAACGCT+AGG | + | chr1_3:8497512-8497531 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8496274 | 8497799 | 8496274 | ID=Msa0101840;Name=Msa0101840 |
| chr1_3 | mRNA | 8496274 | 8497799 | 8496274 | ID=Msa0101840-mRNA-1;Parent=Msa0101840;Name=Msa0101840-mRNA-1;_AED=0.38;_eAED=0.38;_QI=74|0.66|0.25|1|1|1|4|0|365 |
| chr1_3 | exon | 8496274 | 8496694 | 8496274 | ID=Msa0101840-mRNA-1:exon:3427;Parent=Msa0101840-mRNA-1 |
| chr1_3 | exon | 8496832 | 8497099 | 8496832 | ID=Msa0101840-mRNA-1:exon:3426;Parent=Msa0101840-mRNA-1 |
| chr1_3 | exon | 8497209 | 8497414 | 8497209 | ID=Msa0101840-mRNA-1:exon:3425;Parent=Msa0101840-mRNA-1 |
| chr1_3 | exon | 8497523 | 8497799 | 8497523 | ID=Msa0101840-mRNA-1:exon:3424;Parent=Msa0101840-mRNA-1 |
| chr1_3 | five_prime_UTR | 8497726 | 8497799 | 8497726 | ID=Msa0101840-mRNA-1:five_prime_utr;Parent=Msa0101840-mRNA-1 |
| chr1_3 | CDS | 8497523 | 8497725 | 8497523 | ID=Msa0101840-mRNA-1:cds;Parent=Msa0101840-mRNA-1 |
| chr1_3 | CDS | 8497209 | 8497414 | 8497209 | ID=Msa0101840-mRNA-1:cds;Parent=Msa0101840-mRNA-1 |
| chr1_3 | CDS | 8496832 | 8497099 | 8496832 | ID=Msa0101840-mRNA-1:cds;Parent=Msa0101840-mRNA-1 |
| chr1_3 | CDS | 8496274 | 8496694 | 8496274 | ID=Msa0101840-mRNA-1:cds;Parent=Msa0101840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
