AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389360 MtrunA17_Chr7g0224571 93.439 442 3 1 1 416 1 442 0.0 842
Msa0389360 MtrunA17_Chr5g0420221 56.109 442 161 5 1 416 17 451 1.33e-173 493
Msa0389360 MtrunA17_Chr7g0222461 52.232 448 176 6 1 416 10 451 5.07e-152 438
Msa0389360 MtrunA17_Chr5g0398581 47.098 448 189 6 3 416 8 441 2.68e-134 392
Msa0389360 MtrunA17_Chr4g0056741 45.759 448 195 6 3 416 8 441 2.41e-128 377
Msa0389360 MtrunA17_Chr1g0159541 45.169 445 207 7 1 409 9 452 7.69e-124 366
Msa0389360 MtrunA17_Chr3g0125661 45.598 443 202 8 1 409 9 446 5.94e-123 363
Msa0389360 MtrunA17_Chr5g0400941 39.529 425 201 7 1 374 9 428 1.39e-98 303
Msa0389360 MtrunA17_Chr4g0054261 36.321 424 221 5 1 375 28 451 2.18e-82 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389360 AT3G01990.7 63.616 437 119 7 2 404 17 447 0.0 533
Msa0389360 AT3G01990.5 63.616 437 119 7 2 404 17 447 0.0 533
Msa0389360 AT3G01990.10 63.616 437 119 7 2 404 3 433 0.0 531
Msa0389360 AT3G01990.1 63.616 437 119 7 2 404 3 433 0.0 531
Msa0389360 AT3G01990.6 67.506 397 96 5 2 371 17 407 0.0 525
Msa0389360 AT3G01990.11 67.506 397 96 5 2 371 3 393 0.0 523
Msa0389360 AT1G69040.1 58.613 447 152 5 1 416 7 451 0.0 522
Msa0389360 AT1G69040.2 58.613 447 152 5 1 416 11 455 0.0 522
Msa0389360 AT2G03730.2 54.667 450 164 7 1 414 11 456 7.76e-163 466
Msa0389360 AT2G03730.1 54.667 450 164 7 1 414 11 456 7.76e-163 466
Msa0389360 AT3G01990.4 63.772 334 88 5 2 308 17 344 2.24e-144 415
Msa0389360 AT3G01990.2 64.742 329 83 5 2 303 17 339 2.75e-144 414
Msa0389360 AT3G01990.9 63.772 334 88 5 2 308 3 330 4.72e-144 414
Msa0389360 AT1G76990.4 47.032 438 192 7 1 401 9 443 5.71e-129 379
Msa0389360 AT1G76990.5 47.032 438 192 7 1 401 9 443 5.71e-129 379
Msa0389360 AT1G76990.2 47.032 438 192 7 1 401 9 443 5.71e-129 379
Msa0389360 AT1G76990.3 47.032 438 192 7 1 401 9 443 5.71e-129 379
Msa0389360 AT1G76990.1 47.032 438 192 7 1 401 9 443 5.71e-129 379
Msa0389360 AT1G12420.1 46.532 447 193 6 3 416 8 441 3.16e-126 372
Msa0389360 AT4G22780.1 45.295 457 190 8 3 415 8 448 6.74e-123 364
Msa0389360 AT4G22780.2 45.295 457 190 8 3 415 8 448 6.74e-123 364
Msa0389360 AT3G01990.3 61.905 294 79 5 2 268 17 304 3.20e-119 350
Msa0389360 AT3G01990.8 61.905 294 79 5 2 268 3 290 4.26e-119 349
Msa0389360 AT5G25320.3 42.065 397 178 5 26 379 23 410 1.93e-110 332
Msa0389360 AT5G25320.1 40.000 435 183 6 14 379 24 449 1.93e-109 331
Msa0389360 AT1G12420.2 47.644 382 180 5 42 416 1 369 2.22e-109 327
Msa0389360 AT5G65890.1 37.813 439 213 7 1 386 10 441 5.42e-95 293
Msa0389360 AT5G65890.3 37.813 439 213 7 1 386 10 441 5.42e-95 293
Msa0389360 AT5G65890.4 39.740 385 198 6 29 386 12 389 1.07e-90 281
Msa0389360 AT5G65890.2 39.740 385 198 6 29 386 12 389 1.07e-90 281
Msa0389360 AT5G25320.2 38.950 362 143 7 14 306 24 376 6.55e-81 254
Msa0389360 AT5G65890.5 40.575 313 169 4 89 386 17 327 1.06e-75 240

Find 146 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGATGGAGTTTGGTTTA+TGG 0.140421 3_1:+94103938 Msa0389360:CDS
GCAGAAATATCAACAGAAAA+TGG 0.167182 3_1:+94106662 Msa0389360:CDS
AAACATTATTATTGATGTTT+TGG 0.250496 3_1:+94107509 Msa0389360:three_prime_UTR
TCTCTCAGCCTCTGACCTTA+TGG 0.250915 3_1:-94106090 None:intergenic
TCAATAATCTTTGGATCAAC+TGG 0.254312 3_1:-94106728 None:intergenic
CGGATTGAATCAATAATCTT+TGG 0.268125 3_1:-94106737 None:intergenic
ACAACAATTGGCTTTCTCTT+TGG 0.276395 3_1:+94106830 Msa0389360:CDS
TACTCTCAGTATTGTTGCTT+TGG 0.280540 3_1:+94107361 Msa0389360:three_prime_UTR
TACATATACATAAGTAAATA+TGG 0.283989 3_1:+94102672 Msa0389360:exon
ATATGCAGAGGCAAGAAATT+TGG 0.288218 3_1:-94102603 None:intergenic
ATGAATATGCGAAGCTTATA+AGG 0.296452 3_1:+94102698 Msa0389360:CDS
CGTCCCGCCTCTCCACAATA+AGG 0.298680 3_1:+94105150 Msa0389360:CDS
CCAAGAGTAAATAGTACTTT+TGG 0.304611 3_1:+94107218 Msa0389360:three_prime_UTR
CACACTGTTATTGAACTTAC+TGG 0.317762 3_1:+94104975 Msa0389360:CDS
TGAAAACGCCACTGTTATTC+AGG 0.320918 3_1:+94103588 Msa0389360:CDS
GGAAAGGACAGGGGCTTATC+AGG 0.324563 3_1:+94105490 Msa0389360:CDS
ATATTTCCTCTGATGGAGTT+TGG 0.326275 3_1:+94103931 Msa0389360:CDS
CTCATTGACGTTTCAAAGCT+CGG 0.341739 3_1:-94104921 None:intergenic
CTTTCTCTTTCCTTAGTTGT+GGG 0.347061 3_1:+94102546 Msa0389360:five_prime_UTR
CTCTCAGCCTCTGACCTTAT+GGG 0.350548 3_1:-94106089 None:intergenic
ATCAGATTATGTTTGCTGAT+AGG 0.355750 3_1:+94105270 Msa0389360:CDS
ACATCCTGGAGTTACGTATA+GGG 0.365344 3_1:+94105235 Msa0389360:CDS
GTTGTTCCTTGAGGTGGTTT+TGG 0.365505 3_1:-94106812 None:intergenic
ATTTGCTTTGCAACGTCCTC+AGG 0.366403 3_1:+94105174 Msa0389360:CDS
GGACTTAGAGAAAGAGATAA+AGG 0.373479 3_1:+94105317 Msa0389360:CDS
TCAGATTATGTTTGCTGATA+GGG 0.377860 3_1:+94105271 Msa0389360:CDS
AGTTACATCAGTGACGTAAA+AGG 0.381411 3_1:-94106699 None:intergenic
CATATTACTTAGGTTGAGTA+TGG 0.388772 3_1:+94107102 Msa0389360:three_prime_UTR
CACATCCTGGAGTTACGTAT+AGG 0.390969 3_1:+94105234 Msa0389360:CDS
CCAAAAGTACTATTTACTCT+TGG 0.394237 3_1:-94107218 None:intergenic
GAGGCGGGACGGATCTTCTA+TGG 0.405276 3_1:-94105138 None:intergenic
TCCCCTCAGCAAGAGGGGCT+TGG 0.412615 3_1:+94107008 Msa0389360:three_prime_UTR
TCTTTCTCTTTCCTTAGTTG+TGG 0.418607 3_1:+94102545 Msa0389360:five_prime_UTR
ACGTGGTTACCGCTGAGATT+TGG 0.422704 3_1:+94105057 Msa0389360:CDS
CGTCAATGAGAGAGTCTGTT+GGG 0.427819 3_1:+94104934 Msa0389360:CDS
CCACCTCAAGGAACAACAAT+TGG 0.436012 3_1:+94106818 Msa0389360:CDS
ATCTTCTATGGCACAACCAC+TGG 0.440100 3_1:-94105126 None:intergenic
ATACACAGGAGAGGACGTTT+AGG 0.442615 3_1:-94106906 None:intergenic
ACGTTGATGGCTTTCCCATA+AGG 0.443112 3_1:+94106075 Msa0389360:CDS
CAGAAATATCAACAGAAAAT+GGG 0.443339 3_1:+94106663 Msa0389360:CDS
GAGACAGTTACATGCGGAAA+TGG 0.443364 3_1:-94105341 None:intergenic
AAGGCTTATATTTCCTCTGA+TGG 0.443541 3_1:+94103924 Msa0389360:intron
AGGGGAAATAATTATTGAAT+CGG 0.445029 3_1:+94107414 Msa0389360:three_prime_UTR
TTGCTGTTTGTGACAGTAGC+AGG 0.446995 3_1:+94107698 Msa0389360:three_prime_UTR
GTCCCGCCTCTCCACAATAA+GGG 0.458534 3_1:+94105151 Msa0389360:CDS
AAGAAATTCTCCCACAACTA+AGG 0.463575 3_1:-94102556 None:intergenic
GTGGTTCAGACGGAAAGGAC+AGG 0.466972 3_1:+94105479 Msa0389360:CDS
GTTGGTGTAATTTGGAGTCC+TGG 0.470607 3_1:+94107240 Msa0389360:three_prime_UTR
TGCTGGTCGAGCTGCGTACA+TGG 0.470625 3_1:+94107596 Msa0389360:three_prime_UTR
TAATTATTGAATCGGAATTG+AGG 0.470913 3_1:+94107422 Msa0389360:three_prime_UTR
TCACAAAATTATCTTGATGC+AGG 0.472180 3_1:-94107675 None:intergenic
ATCCCTTATTGTGGAGAGGC+GGG 0.479361 3_1:-94105153 None:intergenic
TTAAATTAGGATCTAATTGG+CGG 0.479714 3_1:-94102459 None:intergenic
CTGTGTCGCCGATCTGTCTA+CGG 0.482293 3_1:-94106757 None:intergenic
CCCCTTGTTTCAACCAACAT+TGG 0.482423 3_1:-94107396 None:intergenic
TTTAATGTGACGGATCGAAA+TGG 0.483271 3_1:+94104086 Msa0389360:CDS
TTATATGATCCTTCGAATGC+TGG 0.485960 3_1:+94107579 Msa0389360:three_prime_UTR
GAGATTTATTAGACCAATGT+TGG 0.486166 3_1:+94107383 Msa0389360:three_prime_UTR
TGTACAGTAACATATTACTT+AGG 0.491071 3_1:+94107092 Msa0389360:three_prime_UTR
TTACATAATCATATCAATAG+AGG 0.500413 3_1:+94107485 Msa0389360:three_prime_UTR
CCAATTGTTGTTCCTTGAGG+TGG 0.503099 3_1:-94106818 None:intergenic
TAGGATCTAATTGGCGGTGG+TGG 0.509157 3_1:-94102453 None:intergenic
TTGATGAAAGATGAATACTA+TGG 0.510333 3_1:+94107550 Msa0389360:three_prime_UTR
TGTCTCAGACTGTACTGAAA+GGG 0.510423 3_1:+94105358 Msa0389360:CDS
AGAATAAATATTACCTAGGT+GGG 0.511593 3_1:-94102729 None:intergenic
GGACTATGAAAGAGTTGAAA+GGG 0.513096 3_1:+94105292 Msa0389360:CDS
TGAAGCGGCAATTGAGAGGC+GGG 0.524380 3_1:+94106133 Msa0389360:CDS
CTTACTGGCACAGACAGGCC+TGG 0.525209 3_1:+94104990 Msa0389360:CDS
CGGTAACCACGTTGCAGCGA+AGG 0.527207 3_1:-94105046 None:intergenic
GATTCAATCCGTAGACAGAT+CGG 0.527568 3_1:+94106749 Msa0389360:CDS
ATGGAATGAGGCTGCTAGAG+TGG 0.530587 3_1:+94107615 Msa0389360:three_prime_UTR
CAGATTTCAGATAGTAAACC+AGG 0.531208 3_1:-94105008 None:intergenic
AAAACTGCACTTTCACATCC+TGG 0.532657 3_1:+94105221 Msa0389360:CDS
ACAATATCAAACAACAGCTT+CGG 0.533003 3_1:-94105416 None:intergenic
GAGGAATATTGCTCGAGTGC+GGG 0.533688 3_1:+94107441 Msa0389360:three_prime_UTR
TGGTTCAGACGGAAAGGACA+GGG 0.535404 3_1:+94105480 Msa0389360:CDS
GGCACAACCACTGGAATCAT+CGG 0.542861 3_1:-94105117 None:intergenic
GGTCAGAGGCTGAGAGAGAA+CGG 0.548446 3_1:+94106096 Msa0389360:CDS
CAATAATCTTTGGATCAACT+GGG 0.551404 3_1:-94106727 None:intergenic
TTCCAAGCCCCTCTTGCTGA+GGG 0.551758 3_1:-94107010 None:intergenic
TGGAATTTATACTGCACAGT+AGG 0.552517 3_1:+94107028 Msa0389360:three_prime_UTR
TTGTATGCAGGGGATGGAGC+TGG 0.553032 3_1:+94106559 Msa0389360:intron
TTTCCTCCCCTCAGCAAGAG+GGG 0.554935 3_1:+94107003 Msa0389360:three_prime_UTR
ACCAATGTTGGTTGAAACAA+GGG 0.556122 3_1:+94107395 Msa0389360:three_prime_UTR
TGCAGAGGCAAGAAATTTGG+AGG 0.556549 3_1:-94102600 None:intergenic
AAGAATAAATATTACCTAGG+TGG 0.560958 3_1:-94102730 None:intergenic
AACACAGATTCACATTTACC+AGG 0.561464 3_1:-94107258 None:intergenic
TGCTTTGCAACGTCCTCAGG+GGG 0.561556 3_1:+94105177 Msa0389360:CDS
TTTGCTTTGCAACGTCCTCA+GGG 0.563312 3_1:+94105175 Msa0389360:CDS
AAGCCAATTGTTGTTCCTTG+AGG 0.565288 3_1:-94106821 None:intergenic
TTGAACTTACTGGCACAGAC+AGG 0.567860 3_1:+94104985 Msa0389360:CDS
AATTAGGATCTAATTGGCGG+TGG 0.570949 3_1:-94102456 None:intergenic
GACCAATGTTGGTTGAAACA+AGG 0.571324 3_1:+94107394 Msa0389360:three_prime_UTR
CTGTCTCAGACTGTACTGAA+AGG 0.574748 3_1:+94105357 Msa0389360:CDS
ATAACAGTGTGTTCTTCAGT+AGG 0.575373 3_1:-94104963 None:intergenic
CTATCCCTATACGTAACTCC+AGG 0.576701 3_1:-94105239 None:intergenic
GATCGGCGACACAGTACTGC+AGG 0.577042 3_1:+94106766 Msa0389360:CDS
AGTCATTGATTATATTCAGA+GGG 0.577703 3_1:+94104130 Msa0389360:CDS
AGATCGTGTAGGACTCCTCT+CGG 0.580884 3_1:+94106595 Msa0389360:CDS
AATTGAGAGGCGGGCATCTG+AGG 0.581375 3_1:+94106142 Msa0389360:CDS
GATGGAGTTTGGTTTATGGA+TGG 0.582629 3_1:+94103942 Msa0389360:CDS
GGGACTATGAAAGAGTTGAA+AGG 0.583175 3_1:+94105291 Msa0389360:CDS
AAGCCCCTCTTGCTGAGGGG+AGG 0.583375 3_1:-94107006 None:intergenic
GTCTTGAAGCGGCAATTGAG+AGG 0.589946 3_1:+94106129 Msa0389360:CDS
GCAAAGCAAATCCCTTATTG+TGG 0.590680 3_1:-94105162 None:intergenic
TATGAAAGAGTTGAAAGGGC+AGG 0.592168 3_1:+94105296 Msa0389360:CDS
ATTCCAAGCCCCTCTTGCTG+AGG 0.593621 3_1:-94107011 None:intergenic
ATGGTGTGGTTCAGACGGAA+AGG 0.597148 3_1:+94105474 Msa0389360:CDS
CTTATTGTGGAGAGGCGGGA+CGG 0.600464 3_1:-94105149 None:intergenic
TGAGGAATATTGCTCGAGTG+CGG 0.602595 3_1:+94107440 Msa0389360:three_prime_UTR
AAGTCATTGATTATATTCAG+AGG 0.614562 3_1:+94104129 Msa0389360:CDS
TTGAAGCGGCAATTGAGAGG+CGG 0.615320 3_1:+94106132 Msa0389360:CDS
AATCCCTTATTGTGGAGAGG+CGG 0.617749 3_1:-94105154 None:intergenic
GAGAGTGAAGAAATATGCAG+AGG 0.617781 3_1:-94102615 None:intergenic
TGGCTTTCCCATAAGGTCAG+AGG 0.622432 3_1:+94106082 Msa0389360:CDS
ATCATCGGTTACATGAACTA+CGG 0.623701 3_1:-94105102 None:intergenic
AATATCAACAGAAAATGGGA+AGG 0.627408 3_1:+94106667 Msa0389360:CDS
CGAGCTGCGTACATGGAATG+AGG 0.628101 3_1:+94107603 Msa0389360:three_prime_UTR
CATAAACCAAACTCCATCAG+AGG 0.629050 3_1:-94103937 None:intergenic
GCAGCTCGACCAGCATTCGA+AGG 0.633456 3_1:-94107588 None:intergenic
ACGTCAATGAGAGAGTCTGT+TGG 0.641528 3_1:+94104933 Msa0389360:CDS
TAAGGAGGATGAACCCACCT+AGG 0.644112 3_1:+94102716 Msa0389360:CDS
GCAAATCCCTTATTGTGGAG+AGG 0.645179 3_1:-94105157 None:intergenic
TTGCTTTGCAACGTCCTCAG+GGG 0.645987 3_1:+94105176 Msa0389360:CDS
CGCAGACCTTCGCTGCAACG+TGG 0.648588 3_1:+94105040 Msa0389360:CDS
GACTCCTCTCGGATATCACA+AGG 0.651775 3_1:+94106606 Msa0389360:CDS
CTTTCACCAAAACCACCTCA+AGG 0.651932 3_1:+94106806 Msa0389360:CDS
GCTTATACAGTGTCTTGAAG+CGG 0.655208 3_1:+94106118 Msa0389360:CDS
GAAATAGCGAGAATATACAC+AGG 0.655979 3_1:-94106920 None:intergenic
TGATACATAAACTGTTCTCG+CGG 0.658352 3_1:-94106634 None:intergenic
ATACTGAGAGTAAAAGAGAG+AGG 0.662761 3_1:-94107350 None:intergenic
CATGTAACCGATGATTCCAG+TGG 0.665641 3_1:+94105110 Msa0389360:CDS
AGCGAGAATATACACAGGAG+AGG 0.668278 3_1:-94106915 None:intergenic
TCCAAGCCCCTCTTGCTGAG+GGG 0.672545 3_1:-94107009 None:intergenic
AGAGTGGAGCAGTGTTCACA+TGG 0.675233 3_1:+94107631 Msa0389360:three_prime_UTR
GCAGAGGCAAGAAATTTGGA+GGG 0.679928 3_1:-94102599 None:intergenic
TTGTGCACAGAAGATCGTGT+AGG 0.682342 3_1:+94106584 Msa0389360:CDS
GTCAATGAGAGAGTCTGTTG+GGG 0.683733 3_1:+94104935 Msa0389360:CDS
AATATGCGAAGCTTATAAGG+AGG 0.687339 3_1:+94102701 Msa0389360:CDS
TACTGAAAGGGATTATACTG+TGG 0.689453 3_1:+94105370 Msa0389360:CDS
CCAATGTTGGTTGAAACAAG+GGG 0.692719 3_1:+94107396 Msa0389360:three_prime_UTR
GGTTCAGACGGAAAGGACAG+GGG 0.713601 3_1:+94105481 Msa0389360:CDS
AAGCCATACCTGAATAACAG+TGG 0.722877 3_1:-94103596 None:intergenic
CAGTCTGAGACAGTTACATG+CGG 0.730560 3_1:-94105347 None:intergenic
AAATCCTTGTGATATCCGAG+AGG 0.755556 3_1:-94106610 None:intergenic
ATTATGCGTCCAAATCTCAG+CGG 0.777134 3_1:-94105066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATAATTAAAATTTGA+GGG - chr3_1:94102830-94102849 None:intergenic 10.0%
!!! ACATATTTATATATTTTTGT+TGG - chr3_1:94103496-94103515 None:intergenic 10.0%
!! ATCTTATTGAATATATAAAA+GGG - chr3_1:94103815-94103834 None:intergenic 10.0%
!! AATCTTATTGAATATATAAA+AGG - chr3_1:94103816-94103835 None:intergenic 10.0%
!! AAATTATAATTGATCAATAA+TGG - chr3_1:94104449-94104468 None:intergenic 10.0%
!! TACATATACATAAGTAAATA+TGG + chr3_1:94102672-94102691 Msa0389360:exon 15.0%
!! TATATTATTATTGTTATGGT+TGG + chr3_1:94102801-94102820 Msa0389360:intron 15.0%
!! GATAAGATAATTAAAATTTG+AGG - chr3_1:94102831-94102850 None:intergenic 15.0%
!! ATATATAAATATGTTTGTGT+TGG + chr3_1:94103502-94103521 Msa0389360:intron 15.0%
!!! AAACATTATTATTGATGTTT+TGG + chr3_1:94107509-94107528 Msa0389360:three_prime_UTR 15.0%
!!! CTTTTAAATTAGGATCTAAT+TGG - chr3_1:94102465-94102484 None:intergenic 20.0%
!!! GTGTTTTCAACTTTTAAATT+AGG - chr3_1:94102475-94102494 None:intergenic 20.0%
!! ATGAAGAATAAATATTACCT+AGG - chr3_1:94102736-94102755 None:intergenic 20.0%
!!! ATTTTGTGAAAATATACAGA+GGG - chr3_1:94103631-94103650 None:intergenic 20.0%
!!! AATTTTGTGAAAATATACAG+AGG - chr3_1:94103632-94103651 None:intergenic 20.0%
!! ACAAAAATCCAATTAATACT+TGG - chr3_1:94104054-94104073 None:intergenic 20.0%
!!! TTTGAAATTGGTTTTGATTT+TGG + chr3_1:94104298-94104317 Msa0389360:intron 20.0%
!!! TATTTTTTCTCTCAAAATGT+TGG + chr3_1:94104678-94104697 Msa0389360:intron 20.0%
!!! AGTTTTCTATTACTAATATG+TGG + chr3_1:94104815-94104834 Msa0389360:intron 20.0%
!! TCTTGACAATCTATAATTAA+GGG - chr3_1:94104842-94104861 None:intergenic 20.0%
!! TTCTTGACAATCTATAATTA+AGG - chr3_1:94104843-94104862 None:intergenic 20.0%
!!! TATATAGTTGTGAGATTTTT+TGG - chr3_1:94105842-94105861 None:intergenic 20.0%
!! AATGAAACTTAACAGTATAT+AGG - chr3_1:94105903-94105922 None:intergenic 20.0%
!!! TTGTTTAGGAGTTTTATATT+CGG + chr3_1:94106051-94106070 Msa0389360:intron 20.0%
!!! ACTAAAGCATAGATATTTTA+AGG - chr3_1:94107056-94107075 None:intergenic 20.0%
!! TAGATTATCAAATCCAAAAA+AGG + chr3_1:94107137-94107156 Msa0389360:three_prime_UTR 20.0%
!! TTACATAATCATATCAATAG+AGG + chr3_1:94107485-94107504 Msa0389360:three_prime_UTR 20.0%
! TTAAATTAGGATCTAATTGG+CGG - chr3_1:94102462-94102481 None:intergenic 25.0%
! AGAAGAATAAAAAGTGAAGT+AGG - chr3_1:94102522-94102541 None:intergenic 25.0%
! AGAATAAATATTACCTAGGT+GGG - chr3_1:94102732-94102751 None:intergenic 25.0%
! AAGAATAAATATTACCTAGG+TGG - chr3_1:94102733-94102752 None:intergenic 25.0%
!!! TTACGCTATTTTTTTTACAG+TGG + chr3_1:94102867-94102886 Msa0389360:intron 25.0%
!! TTAATGAACTCGAATTGTTT+TGG + chr3_1:94103241-94103260 Msa0389360:intron 25.0%
! GAAATGAACTTGAATCAATT+AGG + chr3_1:94103370-94103389 Msa0389360:intron 25.0%
!!! TTTCTTCTTCTTTTTTTGAC+TGG - chr3_1:94103681-94103700 None:intergenic 25.0%
! TTGAGTTCTCAAATTATTAG+CGG + chr3_1:94103724-94103743 Msa0389360:intron 25.0%
!!! AATAAGATTGTTTGTTTTGC+AGG + chr3_1:94103827-94103846 Msa0389360:intron 25.0%
! TATGAACCTTGTGATTAAAA+AGG + chr3_1:94103905-94103924 Msa0389360:intron 25.0%
!! TATAAGCCTTTTTAATCACA+AGG - chr3_1:94103914-94103933 None:intergenic 25.0%
!! TAATTTCCTCTCTTAACTTT+TGG + chr3_1:94103965-94103984 Msa0389360:intron 25.0%
!! AAGTCATTGATTATATTCAG+AGG + chr3_1:94104129-94104148 Msa0389360:CDS 25.0%
!! AGTCATTGATTATATTCAGA+GGG + chr3_1:94104130-94104149 Msa0389360:CDS 25.0%
!! GGAATATGTAGATTTGAAAT+TGG + chr3_1:94104286-94104305 Msa0389360:intron 25.0%
! GTCTACTAATTAAATTGGTA+TGG - chr3_1:94104610-94104629 None:intergenic 25.0%
! GTTGAGTCTACTAATTAAAT+TGG - chr3_1:94104615-94104634 None:intergenic 25.0%
! AATTGCGTTATTGATAAACT+GGG - chr3_1:94104707-94104726 None:intergenic 25.0%
! AAATTGCGTTATTGATAAAC+TGG - chr3_1:94104708-94104727 None:intergenic 25.0%
! TAATAAGTGCTTATGCTATA+AGG - chr3_1:94105651-94105670 None:intergenic 25.0%
!! AAAGAAAACAGTTTGACTTT+AGG - chr3_1:94105718-94105737 None:intergenic 25.0%
! AATCTCACAACTATATATGT+CGG + chr3_1:94105845-94105864 Msa0389360:intron 25.0%
!! GATAATTGTTCATGTTGTTT+AGG + chr3_1:94106037-94106056 Msa0389360:intron 25.0%
! ATGATAAATAATAACACACC+TGG + chr3_1:94106166-94106185 Msa0389360:intron 25.0%
! AAAACAAAAACTAGGCTTAA+CGG - chr3_1:94106217-94106236 None:intergenic 25.0%
!!! AAGCCTAGTTTTTGTTTTTT+TGG + chr3_1:94106219-94106238 Msa0389360:intron 25.0%
! ATGCCAAAAAAACAAAAACT+AGG - chr3_1:94106225-94106244 None:intergenic 25.0%
! AAAATAAGCTGATGTTTGTT+TGG + chr3_1:94106271-94106290 Msa0389360:intron 25.0%
!! AAAAAACGAGCTTATCTTTT+GGG - chr3_1:94106430-94106449 None:intergenic 25.0%
!! TAAAAAACGAGCTTATCTTT+TGG - chr3_1:94106431-94106450 None:intergenic 25.0%
!!! ATGTTTTTGAAAGTGTTGTT+TGG + chr3_1:94106457-94106476 Msa0389360:intron 25.0%
!!! TCTTTTCTTTAAGAGAAGTT+AGG - chr3_1:94106483-94106502 None:intergenic 25.0%
! ACTAAAATATGTTTGTATGC+AGG + chr3_1:94106547-94106566 Msa0389360:intron 25.0%
! CTAAAATATGTTTGTATGCA+GGG + chr3_1:94106548-94106567 Msa0389360:intron 25.0%
! TAAAATATGTTTGTATGCAG+GGG + chr3_1:94106549-94106568 Msa0389360:intron 25.0%
! CAGAAATATCAACAGAAAAT+GGG + chr3_1:94106663-94106682 Msa0389360:CDS 25.0%
! TGTACAGTAACATATTACTT+AGG + chr3_1:94107092-94107111 Msa0389360:three_prime_UTR 25.0%
!!! AAATGCACTATTTCCTTTTT+TGG - chr3_1:94107153-94107172 None:intergenic 25.0%
! AGGGGAAATAATTATTGAAT+CGG + chr3_1:94107414-94107433 Msa0389360:three_prime_UTR 25.0%
! TAATTATTGAATCGGAATTG+AGG + chr3_1:94107422-94107441 Msa0389360:three_prime_UTR 25.0%
! TTGATGAAAGATGAATACTA+TGG + chr3_1:94107550-94107569 Msa0389360:three_prime_UTR 25.0%
!!! GTTTTGATTAATGTGTGTTT+TGG + chr3_1:94107720-94107739 Msa0389360:three_prime_UTR 25.0%
TAAAAAGTGAAGTAGGTAAG+TGG - chr3_1:94102515-94102534 None:intergenic 30.0%
ATGAATATGCGAAGCTTATA+AGG + chr3_1:94102698-94102717 Msa0389360:CDS 30.0%
TGGTTACGCATATTCATATA+TGG - chr3_1:94103078-94103097 None:intergenic 30.0%
TTAATGAGCTTGAATCGATT+TGG + chr3_1:94103117-94103136 Msa0389360:intron 30.0%
!! TTAATTGGCTCGAATCAATT+TGG + chr3_1:94103179-94103198 Msa0389360:intron 30.0%
!! TTAATTGACTCGAATCGATT+TGG + chr3_1:94103303-94103322 Msa0389360:intron 30.0%
AGTAAAAATTGTTCCAACTC+AGG - chr3_1:94103400-94103419 None:intergenic 30.0%
ACTTGACTTTACTTACCTTA+TGG + chr3_1:94103417-94103436 Msa0389360:intron 30.0%
ATATGTTTGTGTTGGAATTG+TGG + chr3_1:94103510-94103529 Msa0389360:intron 30.0%
AAATTGCAATCTATGAAGCA+CGG - chr3_1:94103791-94103810 None:intergenic 30.0%
TTGACAGTGTAAACAAACAT+GGG + chr3_1:94103850-94103869 Msa0389360:intron 30.0%
! GGTTCATATCTGAAATAACT+TGG - chr3_1:94103893-94103912 None:intergenic 30.0%
CTTCTGATCCAAGTATTAAT+TGG + chr3_1:94104043-94104062 Msa0389360:intron 30.0%
! TTTTGCAGTGTTTAATGTGA+CGG + chr3_1:94104076-94104095 Msa0389360:intron 30.0%
ATTGATTATATTCAGAGGGT+AGG + chr3_1:94104134-94104153 Msa0389360:intron 30.0%
!! TGAAGATTTCTAGCAAAGAA+CGG - chr3_1:94104240-94104259 None:intergenic 30.0%
! AATCTTCAAGTTAAGTAAGC+AGG + chr3_1:94104252-94104271 Msa0389360:intron 30.0%
AATCAACATGCAGAAAATGA+GGG - chr3_1:94104363-94104382 None:intergenic 30.0%
! TTTTCATCAAAGCGAATTGT+TGG + chr3_1:94104403-94104422 Msa0389360:intron 30.0%
TTTCCTAATCGAAATTACGT+TGG + chr3_1:94104473-94104492 Msa0389360:intron 30.0%
AAACCAACGTAATTTCGATT+AGG - chr3_1:94104479-94104498 None:intergenic 30.0%
CTCAAATTGACAAAAGTGAA+GGG - chr3_1:94104646-94104665 None:intergenic 30.0%
TCTCAAATTGACAAAAGTGA+AGG - chr3_1:94104647-94104666 None:intergenic 30.0%
ATTGCGTTATTGATAAACTG+GGG - chr3_1:94104706-94104725 None:intergenic 30.0%
! TTTTAGTCCATGCAAATTTG+TGG + chr3_1:94104725-94104744 Msa0389360:intron 30.0%
! ATCAGATTATGTTTGCTGAT+AGG + chr3_1:94105270-94105289 Msa0389360:CDS 30.0%
! TCAGATTATGTTTGCTGATA+GGG + chr3_1:94105271-94105290 Msa0389360:CDS 30.0%
ACAATATCAAACAACAGCTT+CGG - chr3_1:94105419-94105438 None:intergenic 30.0%
! ATGCAGTATGTAGTTTTTCA+TGG + chr3_1:94105455-94105474 Msa0389360:CDS 30.0%
ACAAGTACAGAAAACGAAAA+AGG - chr3_1:94105563-94105582 None:intergenic 30.0%
! TCGTTTTCTGTACTTGTTTA+AGG + chr3_1:94105566-94105585 Msa0389360:intron 30.0%
! TTTTCTGTACTTGTTTAAGG+TGG + chr3_1:94105569-94105588 Msa0389360:intron 30.0%
!!! ATTTTTTGGTAGAGTGCTTA+TGG - chr3_1:94105828-94105847 None:intergenic 30.0%
GTATACAGCAAATGCAAATT+AGG - chr3_1:94106003-94106022 None:intergenic 30.0%
!! CTTTTCTAAAAGTAGTTGAG+AGG - chr3_1:94106385-94106404 None:intergenic 30.0%
AGTATACCATTGAAGAATGA+GGG - chr3_1:94106530-94106549 None:intergenic 30.0%
TAGTATACCATTGAAGAATG+AGG - chr3_1:94106531-94106550 None:intergenic 30.0%
GCAGAAATATCAACAGAAAA+TGG + chr3_1:94106662-94106681 Msa0389360:CDS 30.0%
AATATCAACAGAAAATGGGA+AGG + chr3_1:94106667-94106686 Msa0389360:CDS 30.0%
CAATAATCTTTGGATCAACT+GGG - chr3_1:94106730-94106749 None:intergenic 30.0%
TCAATAATCTTTGGATCAAC+TGG - chr3_1:94106731-94106750 None:intergenic 30.0%
CGGATTGAATCAATAATCTT+TGG - chr3_1:94106740-94106759 None:intergenic 30.0%
!!! TCTCTTTGGAAGTTTTTTCA+AGG + chr3_1:94106844-94106863 Msa0389360:CDS 30.0%
!! CATATTACTTAGGTTGAGTA+TGG + chr3_1:94107102-94107121 Msa0389360:three_prime_UTR 30.0%
!! CCAAAAGTACTATTTACTCT+TGG - chr3_1:94107221-94107240 None:intergenic 30.0%
! CCAAGAGTAAATAGTACTTT+TGG + chr3_1:94107218-94107237 Msa0389360:three_prime_UTR 30.0%
! GAGTAAATAGTACTTTTGGT+TGG + chr3_1:94107222-94107241 Msa0389360:three_prime_UTR 30.0%
!! TACTTTTGGTTGGTGTAATT+TGG + chr3_1:94107232-94107251 Msa0389360:three_prime_UTR 30.0%
GAGATTTATTAGACCAATGT+TGG + chr3_1:94107383-94107402 Msa0389360:three_prime_UTR 30.0%
TCACAAAATTATCTTGATGC+AGG - chr3_1:94107678-94107697 None:intergenic 30.0%
TCTTTCTCTTTCCTTAGTTG+TGG + chr3_1:94102545-94102564 Msa0389360:five_prime_UTR 35.0%
CTTTCTCTTTCCTTAGTTGT+GGG + chr3_1:94102546-94102565 Msa0389360:five_prime_UTR 35.0%
AAGAAATTCTCCCACAACTA+AGG - chr3_1:94102559-94102578 None:intergenic 35.0%
ATATGCAGAGGCAAGAAATT+TGG - chr3_1:94102606-94102625 None:intergenic 35.0%
AATATGCGAAGCTTATAAGG+AGG + chr3_1:94102701-94102720 Msa0389360:CDS 35.0%
!! CTGGGTTTGTTACTTCTATT+TGG + chr3_1:94103006-94103025 Msa0389360:intron 35.0%
!! GGTTTGTTACTTCTATTTGG+TGG + chr3_1:94103009-94103028 Msa0389360:intron 35.0%
ATATGCGTAACCAAGTGATT+CGG + chr3_1:94103085-94103104 Msa0389360:intron 35.0%
TACTTGAGTTTGAATCCAAG+TGG + chr3_1:94103328-94103347 Msa0389360:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr3_1:94103730-94103749 Msa0389360:intron 35.0%
GTTGACAGTGTAAACAAACA+TGG + chr3_1:94103849-94103868 Msa0389360:intron 35.0%
AAACAAACATGGGATACTCT+TGG + chr3_1:94103860-94103879 Msa0389360:intron 35.0%
AAGGCTTATATTTCCTCTGA+TGG + chr3_1:94103924-94103943 Msa0389360:intron 35.0%
ATATTTCCTCTGATGGAGTT+TGG + chr3_1:94103931-94103950 Msa0389360:CDS 35.0%
! AACTTTTGGCATGCGTAATT+CGG + chr3_1:94103979-94103998 Msa0389360:intron 35.0%
!! TTTAATGTGACGGATCGAAA+TGG + chr3_1:94104086-94104105 Msa0389360:CDS 35.0%
AGTAAGCAGGACAATGATAT+TGG + chr3_1:94104265-94104284 Msa0389360:intron 35.0%
AAAACGATCCTAAAGATCAG+AGG - chr3_1:94104339-94104358 None:intergenic 35.0%
CAATCAACATGCAGAAAATG+AGG - chr3_1:94104364-94104383 None:intergenic 35.0%
!! TTGGTTTTCTGTATTCTTCG+AGG + chr3_1:94104492-94104511 Msa0389360:intron 35.0%
CTATTAGCCACAAATTTGCA+TGG - chr3_1:94104735-94104754 None:intergenic 35.0%
!! TTATTTCTAACAGCCAGATC+AGG - chr3_1:94104774-94104793 None:intergenic 35.0%
ATAACAGTGTGTTCTTCAGT+AGG - chr3_1:94104966-94104985 None:intergenic 35.0%
CACACTGTTATTGAACTTAC+TGG + chr3_1:94104975-94104994 Msa0389360:CDS 35.0%
CAGATTTCAGATAGTAAACC+AGG - chr3_1:94105011-94105030 None:intergenic 35.0%
! ATCATCGGTTACATGAACTA+CGG - chr3_1:94105105-94105124 None:intergenic 35.0%
GGACTATGAAAGAGTTGAAA+GGG + chr3_1:94105292-94105311 Msa0389360:CDS 35.0%
GGACTTAGAGAAAGAGATAA+AGG + chr3_1:94105317-94105336 Msa0389360:CDS 35.0%
TACTGAAAGGGATTATACTG+TGG + chr3_1:94105370-94105389 Msa0389360:CDS 35.0%
! GTATGTAGTTTTTCATGGTG+TGG + chr3_1:94105460-94105479 Msa0389360:CDS 35.0%
!! ATATTTTGTTGTCTGCCGTT+AGG + chr3_1:94105524-94105543 Msa0389360:intron 35.0%
AAGACAATCCCATCAAACAT+AGG + chr3_1:94105594-94105613 Msa0389360:intron 35.0%
AAACAGAGCCTATGTTTGAT+GGG - chr3_1:94105605-94105624 None:intergenic 35.0%
TGAAATAAGTCATTCCAACC+AGG + chr3_1:94105877-94105896 Msa0389360:intron 35.0%
AACTTAACAGTATATAGGCC+TGG - chr3_1:94105898-94105917 None:intergenic 35.0%
GTTAAGTTTCATTCGATCAG+AGG + chr3_1:94105910-94105929 Msa0389360:intron 35.0%
AAAGAAGATCGCTTATGAAC+AGG - chr3_1:94105941-94105960 None:intergenic 35.0%
TCATAAGCGATCTTCTTTGT+AGG + chr3_1:94105943-94105962 Msa0389360:intron 35.0%
CATAAGCGATCTTCTTTGTA+GGG + chr3_1:94105944-94105963 Msa0389360:intron 35.0%
! TTTTATATTCGGCACGTTGA+TGG + chr3_1:94106062-94106081 Msa0389360:CDS 35.0%
TGATACATAAACTGTTCTCG+CGG - chr3_1:94106637-94106656 None:intergenic 35.0%
AGTTACATCAGTGACGTAAA+AGG - chr3_1:94106702-94106721 None:intergenic 35.0%
! TTTTACGTCACTGATGTAAC+TGG + chr3_1:94106701-94106720 Msa0389360:CDS 35.0%
!! ACAACAATTGGCTTTCTCTT+TGG + chr3_1:94106830-94106849 Msa0389360:CDS 35.0%
GAAATAGCGAGAATATACAC+AGG - chr3_1:94106923-94106942 None:intergenic 35.0%
TGGAATTTATACTGCACAGT+AGG + chr3_1:94107028-94107047 Msa0389360:three_prime_UTR 35.0%
AACACAGATTCACATTTACC+AGG - chr3_1:94107261-94107280 None:intergenic 35.0%
ATACTGAGAGTAAAAGAGAG+AGG - chr3_1:94107353-94107372 None:intergenic 35.0%
! TACTCTCAGTATTGTTGCTT+TGG + chr3_1:94107361-94107380 Msa0389360:three_prime_UTR 35.0%
! ACCAATGTTGGTTGAAACAA+GGG + chr3_1:94107395-94107414 Msa0389360:three_prime_UTR 35.0%
TTATATGATCCTTCGAATGC+TGG + chr3_1:94107579-94107598 Msa0389360:three_prime_UTR 35.0%
AATTAGGATCTAATTGGCGG+TGG - chr3_1:94102459-94102478 None:intergenic 40.0%
GAGAGTGAAGAAATATGCAG+AGG - chr3_1:94102618-94102637 None:intergenic 40.0%
GGACTTCATAATTTCCTGTC+TGG + chr3_1:94102974-94102993 Msa0389360:intron 40.0%
! TCCTGTCTGGAATGATAATC+TGG + chr3_1:94102987-94103006 Msa0389360:intron 40.0%
! CCTGTCTGGAATGATAATCT+GGG + chr3_1:94102988-94103007 Msa0389360:intron 40.0%
! AACGACTTGGATTCAAACTC+AGG - chr3_1:94103147-94103166 None:intergenic 40.0%
GAGTTTGAATCCAAGTCGTT+CGG + chr3_1:94103147-94103166 Msa0389360:intron 40.0%
GAGTAACTGAGTTTGAATCC+AGG + chr3_1:94103201-94103220 Msa0389360:intron 40.0%
TAACTGAGTTTGAATCCAGG+TGG + chr3_1:94103204-94103223 Msa0389360:intron 40.0%
AACCACTTGGATTCAAACTC+AGG - chr3_1:94103271-94103290 None:intergenic 40.0%
GAGTTTGAATCCAAGTGGTT+CGG + chr3_1:94103271-94103290 Msa0389360:intron 40.0%
GAGTTTGAATCCAAGTGGTT+CGG + chr3_1:94103271-94103290 Msa0389360:intron 40.0%
!! TCAATTAGGAGTACCTGAGT+TGG + chr3_1:94103384-94103403 Msa0389360:intron 40.0%
! TAATCTGGAATCCCGGATTT+CGG - chr3_1:94103443-94103462 None:intergenic 40.0%
TGAAAACGCCACTGTTATTC+AGG + chr3_1:94103588-94103607 Msa0389360:CDS 40.0%
AAGCCATACCTGAATAACAG+TGG - chr3_1:94103599-94103618 None:intergenic 40.0%
CATAAACCAAACTCCATCAG+AGG - chr3_1:94103940-94103959 None:intergenic 40.0%
! CTCTGATGGAGTTTGGTTTA+TGG + chr3_1:94103938-94103957 Msa0389360:CDS 40.0%
! GATGGAGTTTGGTTTATGGA+TGG + chr3_1:94103942-94103961 Msa0389360:CDS 40.0%
! ACTTTTGGCATGCGTAATTC+GGG + chr3_1:94103980-94103999 Msa0389360:intron 40.0%
! TTTTTGTTGCTCCATCTCTG+TGG + chr3_1:94104201-94104220 Msa0389360:intron 40.0%
ATCAATCGCCTCTGATCTTT+AGG + chr3_1:94104328-94104347 Msa0389360:intron 40.0%
TCATCAAAGCGAATTGTTGG+AGG + chr3_1:94104406-94104425 Msa0389360:intron 40.0%
CATCAAAGCGAATTGTTGGA+GGG + chr3_1:94104407-94104426 Msa0389360:intron 40.0%
ATCAAAGCGAATTGTTGGAG+GGG + chr3_1:94104408-94104427 Msa0389360:intron 40.0%
AGATTGTGTGCATGAACTTG+CGG + chr3_1:94104517-94104536 Msa0389360:intron 40.0%
ACAAAAGTGAAGGGATCAGA+TGG - chr3_1:94104637-94104656 None:intergenic 40.0%
CTCATTGACGTTTCAAAGCT+CGG - chr3_1:94104924-94104943 None:intergenic 40.0%
ATTATGCGTCCAAATCTCAG+CGG - chr3_1:94105069-94105088 None:intergenic 40.0%
GCAAAGCAAATCCCTTATTG+TGG - chr3_1:94105165-94105184 None:intergenic 40.0%
!! AGTGCAGTTTTTGCTGTCTT+CGG - chr3_1:94105212-94105231 None:intergenic 40.0%
AAAACTGCACTTTCACATCC+TGG + chr3_1:94105221-94105240 Msa0389360:CDS 40.0%
ACATCCTGGAGTTACGTATA+GGG + chr3_1:94105235-94105254 Msa0389360:CDS 40.0%
GGGACTATGAAAGAGTTGAA+AGG + chr3_1:94105291-94105310 Msa0389360:CDS 40.0%
TATGAAAGAGTTGAAAGGGC+AGG + chr3_1:94105296-94105315 Msa0389360:CDS 40.0%
TGTCTCAGACTGTACTGAAA+GGG + chr3_1:94105358-94105377 Msa0389360:CDS 40.0%
! TTTTCATGGTGTGGTTCAGA+CGG + chr3_1:94105469-94105488 Msa0389360:CDS 40.0%
GGTGAACGATCATTTCCTAA+CGG - chr3_1:94105542-94105561 None:intergenic 40.0%
CAAACAGAGCCTATGTTTGA+TGG - chr3_1:94105606-94105625 None:intergenic 40.0%
CATCAAACATAGGCTCTGTT+TGG + chr3_1:94105604-94105623 Msa0389360:intron 40.0%
! GCTGTTTCAATAAGCTATCC+TGG + chr3_1:94105749-94105768 Msa0389360:intron 40.0%
CTTATTTCAAGAAGCTCTCC+AGG - chr3_1:94105770-94105789 None:intergenic 40.0%
TAACAGTATATAGGCCTGGT+TGG - chr3_1:94105894-94105913 None:intergenic 40.0%
AGTTTCATTCGATCAGAGGA+TGG + chr3_1:94105914-94105933 Msa0389360:intron 40.0%
GTTTCATTCGATCAGAGGAT+GGG + chr3_1:94105915-94105934 Msa0389360:intron 40.0%
GATCTTCTTTGTAGGGCTTT+CGG + chr3_1:94105951-94105970 Msa0389360:intron 40.0%
GCTTATACAGTGTCTTGAAG+CGG + chr3_1:94106118-94106137 Msa0389360:CDS 40.0%
AACACACCCTCATTCTTCAA+TGG + chr3_1:94106521-94106540 Msa0389360:intron 40.0%
ATATGTTTGTATGCAGGGGA+TGG + chr3_1:94106553-94106572 Msa0389360:intron 40.0%
AAATCCTTGTGATATCCGAG+AGG - chr3_1:94106613-94106632 None:intergenic 40.0%
GATTCAATCCGTAGACAGAT+CGG + chr3_1:94106749-94106768 Msa0389360:CDS 40.0%
! AAGCCAATTGTTGTTCCTTG+AGG - chr3_1:94106824-94106843 None:intergenic 40.0%
! GACCAATGTTGGTTGAAACA+AGG + chr3_1:94107394-94107413 Msa0389360:three_prime_UTR 40.0%
! CCAATGTTGGTTGAAACAAG+GGG + chr3_1:94107396-94107415 Msa0389360:three_prime_UTR 40.0%
GCAGAGGCAAGAAATTTGGA+GGG - chr3_1:94102602-94102621 None:intergenic 45.0%
TGCAGAGGCAAGAAATTTGG+AGG - chr3_1:94102603-94102622 None:intergenic 45.0%
CCCAGATTATCATTCCAGAC+AGG - chr3_1:94102991-94103010 None:intergenic 45.0%
GTTCGGCTCAAGTGGTTAAT+TGG + chr3_1:94103164-94103183 Msa0389360:intron 45.0%
GAGTTTGAATCCAGGTGGTT+AGG + chr3_1:94103209-94103228 Msa0389360:intron 45.0%
TGCCTGAGTTTGAATCCAAG+TGG + chr3_1:94103266-94103285 Msa0389360:intron 45.0%
!! TCCAAGTGGTTCGGTTTAAG+TGG + chr3_1:94103280-94103299 Msa0389360:intron 45.0%
ACCACTTAAACCGAACCACT+TGG - chr3_1:94103284-94103303 None:intergenic 45.0%
CTTACCTTATGGCCGAAATC+CGG + chr3_1:94103428-94103447 Msa0389360:intron 45.0%
TTACCTTATGGCCGAAATCC+GGG + chr3_1:94103429-94103448 Msa0389360:intron 45.0%
! TAACTCGCTTCTTGCTATGC+AGG + chr3_1:94103542-94103561 Msa0389360:intron 45.0%
! AACTCGCTTCTTGCTATGCA+GGG + chr3_1:94103543-94103562 Msa0389360:intron 45.0%
ACGCCACTGTTATTCAGGTA+TGG + chr3_1:94103593-94103612 Msa0389360:intron 45.0%
ATGAAGCACGGATACAGACA+CGG - chr3_1:94103779-94103798 None:intergenic 45.0%
CGCATGCCAAAAGTTAAGAG+AGG - chr3_1:94103974-94103993 None:intergenic 45.0%
AAATCACCCTTCCACAGAGA+TGG - chr3_1:94104215-94104234 None:intergenic 45.0%
TCAAAGCGAATTGTTGGAGG+GGG + chr3_1:94104409-94104428 Msa0389360:intron 45.0%
GATTGTGTGCATGAACTTGC+GGG + chr3_1:94104518-94104537 Msa0389360:intron 45.0%
ATGAACTTGCGGGATTCATC+TGG + chr3_1:94104528-94104547 Msa0389360:intron 45.0%
ACGTCAATGAGAGAGTCTGT+TGG + chr3_1:94104933-94104952 Msa0389360:CDS 45.0%
CGTCAATGAGAGAGTCTGTT+GGG + chr3_1:94104934-94104953 Msa0389360:CDS 45.0%
GTCAATGAGAGAGTCTGTTG+GGG + chr3_1:94104935-94104954 Msa0389360:CDS 45.0%
TTGAACTTACTGGCACAGAC+AGG + chr3_1:94104985-94105004 Msa0389360:CDS 45.0%
CATGTAACCGATGATTCCAG+TGG + chr3_1:94105110-94105129 Msa0389360:CDS 45.0%
ATCTTCTATGGCACAACCAC+TGG - chr3_1:94105129-94105148 None:intergenic 45.0%
AATCCCTTATTGTGGAGAGG+CGG - chr3_1:94105157-94105176 None:intergenic 45.0%
GCAAATCCCTTATTGTGGAG+AGG - chr3_1:94105160-94105179 None:intergenic 45.0%
ATTTGCTTTGCAACGTCCTC+AGG + chr3_1:94105174-94105193 Msa0389360:CDS 45.0%
TTTGCTTTGCAACGTCCTCA+GGG + chr3_1:94105175-94105194 Msa0389360:CDS 45.0%
CACATCCTGGAGTTACGTAT+AGG + chr3_1:94105234-94105253 Msa0389360:CDS 45.0%
CTATCCCTATACGTAACTCC+AGG - chr3_1:94105242-94105261 None:intergenic 45.0%
GAGACAGTTACATGCGGAAA+TGG - chr3_1:94105344-94105363 None:intergenic 45.0%
! CAGTCTGAGACAGTTACATG+CGG - chr3_1:94105350-94105369 None:intergenic 45.0%
CTGTCTCAGACTGTACTGAA+AGG + chr3_1:94105357-94105376 Msa0389360:CDS 45.0%
!! TGGTTGGTCTGCTTCAGTTT+GGG + chr3_1:94105975-94105994 Msa0389360:intron 45.0%
!! ACGTTGATGGCTTTCCCATA+AGG + chr3_1:94106075-94106094 Msa0389360:CDS 45.0%
TTGTGCACAGAAGATCGTGT+AGG + chr3_1:94106584-94106603 Msa0389360:CDS 45.0%
CTTTCACCAAAACCACCTCA+AGG + chr3_1:94106806-94106825 Msa0389360:CDS 45.0%
! GTTGTTCCTTGAGGTGGTTT+TGG - chr3_1:94106815-94106834 None:intergenic 45.0%
! CCAATTGTTGTTCCTTGAGG+TGG - chr3_1:94106821-94106840 None:intergenic 45.0%
CCACCTCAAGGAACAACAAT+TGG + chr3_1:94106818-94106837 Msa0389360:CDS 45.0%
ATACACAGGAGAGGACGTTT+AGG - chr3_1:94106909-94106928 None:intergenic 45.0%
AGCGAGAATATACACAGGAG+AGG - chr3_1:94106918-94106937 None:intergenic 45.0%
! GTTGGTGTAATTTGGAGTCC+TGG + chr3_1:94107240-94107259 Msa0389360:three_prime_UTR 45.0%
! CCCCTTGTTTCAACCAACAT+TGG - chr3_1:94107399-94107418 None:intergenic 45.0%
TGAGGAATATTGCTCGAGTG+CGG + chr3_1:94107440-94107459 Msa0389360:three_prime_UTR 45.0%
!! GTTTTGGCGAAAGAAGACTC+AGG + chr3_1:94107525-94107544 Msa0389360:three_prime_UTR 45.0%
!! TTGCTGTTTGTGACAGTAGC+AGG + chr3_1:94107698-94107717 Msa0389360:three_prime_UTR 45.0%
!! TATTTATATTATTATTGTTA+TGG + chr3_1:94102797-94102816 Msa0389360:intron 5.0%
!!! TTATCAATTTTTTATTTTTA+TGG + chr3_1:94102953-94102972 Msa0389360:intron 5.0%
!! AAAATAGATAAAATTATAAA+AGG + chr3_1:94106336-94106355 Msa0389360:intron 5.0%
TAGGATCTAATTGGCGGTGG+TGG - chr3_1:94102456-94102475 None:intergenic 50.0%
TAAGGAGGATGAACCCACCT+AGG + chr3_1:94102716-94102735 Msa0389360:CDS 50.0%
! ACCAAGTGATTCGGCTCAAG+TGG + chr3_1:94103094-94103113 Msa0389360:intron 50.0%
ACCACTTGAGCCGAATCACT+TGG - chr3_1:94103098-94103117 None:intergenic 50.0%
TCCAGGTGGTTAGGCTTAAG+TGG + chr3_1:94103218-94103237 Msa0389360:intron 50.0%
ACCACTTAAGCCTAACCACC+TGG - chr3_1:94103222-94103241 None:intergenic 50.0%
AATCCCGGATTTCGGCCATA+AGG - chr3_1:94103435-94103454 None:intergenic 50.0%
! GGGCTACTAATCTGGAATCC+CGG - chr3_1:94103450-94103469 None:intergenic 50.0%
TCAGGAAGGGGCTACTAATC+TGG - chr3_1:94103458-94103477 None:intergenic 50.0%
TTAGTAGCCCCTTCCTGAGT+TGG + chr3_1:94103460-94103479 Msa0389360:intron 50.0%
TAACCCTCCAACTCAGGAAG+GGG - chr3_1:94103470-94103489 None:intergenic 50.0%
CTAACCCTCCAACTCAGGAA+GGG - chr3_1:94103471-94103490 None:intergenic 50.0%
TGTTGCTCCATCTCTGTGGA+AGG + chr3_1:94104205-94104224 Msa0389360:intron 50.0%
GTTGCTCCATCTCTGTGGAA+GGG + chr3_1:94104206-94104225 Msa0389360:intron 50.0%
CAAAGCGAATTGTTGGAGGG+GGG + chr3_1:94104410-94104429 Msa0389360:intron 50.0%
GCAGAGATGTTGACCTGATC+TGG + chr3_1:94104758-94104777 Msa0389360:intron 50.0%
ACGTGGTTACCGCTGAGATT+TGG + chr3_1:94105057-94105076 Msa0389360:CDS 50.0%
GGCACAACCACTGGAATCAT+CGG - chr3_1:94105120-94105139 None:intergenic 50.0%
ATCCCTTATTGTGGAGAGGC+GGG - chr3_1:94105156-94105175 None:intergenic 50.0%
TTGCTTTGCAACGTCCTCAG+GGG + chr3_1:94105176-94105195 Msa0389360:CDS 50.0%
ATGGTGTGGTTCAGACGGAA+AGG + chr3_1:94105474-94105493 Msa0389360:CDS 50.0%
TGGTTCAGACGGAAAGGACA+GGG + chr3_1:94105480-94105499 Msa0389360:CDS 50.0%
TTCTTTGTAGGGCTTTCGGC+TGG + chr3_1:94105955-94105974 Msa0389360:intron 50.0%
!! CTGGTTGGTCTGCTTCAGTT+TGG + chr3_1:94105974-94105993 Msa0389360:intron 50.0%
TGGCTTTCCCATAAGGTCAG+AGG + chr3_1:94106082-94106101 Msa0389360:CDS 50.0%
CTCTCAGCCTCTGACCTTAT+GGG - chr3_1:94106092-94106111 None:intergenic 50.0%
TCTCTCAGCCTCTGACCTTA+TGG - chr3_1:94106093-94106112 None:intergenic 50.0%
GTCTTGAAGCGGCAATTGAG+AGG + chr3_1:94106129-94106148 Msa0389360:CDS 50.0%
TTGAAGCGGCAATTGAGAGG+CGG + chr3_1:94106132-94106151 Msa0389360:CDS 50.0%
AGATCGTGTAGGACTCCTCT+CGG + chr3_1:94106595-94106614 Msa0389360:CDS 50.0%
GACTCCTCTCGGATATCACA+AGG + chr3_1:94106606-94106625 Msa0389360:CDS 50.0%
! ATTTTCCTCCCCTCAGCAAG+AGG + chr3_1:94107001-94107020 Msa0389360:three_prime_UTR 50.0%
! TTTTCCTCCCCTCAGCAAGA+GGG + chr3_1:94107002-94107021 Msa0389360:three_prime_UTR 50.0%
GAGGAATATTGCTCGAGTGC+GGG + chr3_1:94107441-94107460 Msa0389360:three_prime_UTR 50.0%
ATGGAATGAGGCTGCTAGAG+TGG + chr3_1:94107615-94107634 Msa0389360:three_prime_UTR 50.0%
AGAGTGGAGCAGTGTTCACA+TGG + chr3_1:94107631-94107650 Msa0389360:three_prime_UTR 50.0%
TCCAAGTCGTTCGGCTCAAG+TGG + chr3_1:94103156-94103175 Msa0389360:intron 55.0%
ACCACTTGAGCCGAACGACT+TGG - chr3_1:94103160-94103179 None:intergenic 55.0%
! TCCAAGTGGTTCGGCTCAAG+TGG + chr3_1:94103342-94103361 Msa0389360:intron 55.0%
ACCACTTGAGCCGAACCACT+TGG - chr3_1:94103346-94103365 None:intergenic 55.0%
! TAGCCCCTTCCTGAGTTGGA+GGG + chr3_1:94103464-94103483 Msa0389360:intron 55.0%
CCTAACCCTCCAACTCAGGA+AGG - chr3_1:94103472-94103491 None:intergenic 55.0%
! CCTTCCTGAGTTGGAGGGTT+AGG + chr3_1:94103469-94103488 Msa0389360:intron 55.0%
TGGTCCTAACCCTCCAACTC+AGG - chr3_1:94103476-94103495 None:intergenic 55.0%
ACAGACACGGACACCAGACA+CGG - chr3_1:94103766-94103785 None:intergenic 55.0%
CTTATTGTGGAGAGGCGGGA+CGG - chr3_1:94105152-94105171 None:intergenic 55.0%
GTCCCGCCTCTCCACAATAA+GGG + chr3_1:94105151-94105170 Msa0389360:CDS 55.0%
TGCTTTGCAACGTCCTCAGG+GGG + chr3_1:94105177-94105196 Msa0389360:CDS 55.0%
GTGGTTCAGACGGAAAGGAC+AGG + chr3_1:94105479-94105498 Msa0389360:CDS 55.0%
GGTTCAGACGGAAAGGACAG+GGG + chr3_1:94105481-94105500 Msa0389360:CDS 55.0%
GGAAAGGACAGGGGCTTATC+AGG + chr3_1:94105490-94105509 Msa0389360:CDS 55.0%
TTGTAGGGCTTTCGGCTGGT+TGG + chr3_1:94105959-94105978 Msa0389360:intron 55.0%
GGTCAGAGGCTGAGAGAGAA+CGG + chr3_1:94106096-94106115 Msa0389360:CDS 55.0%
TGAAGCGGCAATTGAGAGGC+GGG + chr3_1:94106133-94106152 Msa0389360:CDS 55.0%
AATTGAGAGGCGGGCATCTG+AGG + chr3_1:94106142-94106161 Msa0389360:CDS 55.0%
CTTAACGGCCTCAAAGAGCG+AGG - chr3_1:94106202-94106221 None:intergenic 55.0%
TTGTATGCAGGGGATGGAGC+TGG + chr3_1:94106559-94106578 Msa0389360:intron 55.0%
CTGTGTCGCCGATCTGTCTA+CGG - chr3_1:94106760-94106779 None:intergenic 55.0%
TTTCCTCCCCTCAGCAAGAG+GGG + chr3_1:94107003-94107022 Msa0389360:three_prime_UTR 55.0%
TTCCAAGCCCCTCTTGCTGA+GGG - chr3_1:94107013-94107032 None:intergenic 55.0%
ATTCCAAGCCCCTCTTGCTG+AGG - chr3_1:94107014-94107033 None:intergenic 55.0%
CGAGCTGCGTACATGGAATG+AGG + chr3_1:94107603-94107622 Msa0389360:three_prime_UTR 55.0%
! GTAGCCCCTTCCTGAGTTGG+AGG + chr3_1:94103463-94103482 Msa0389360:intron 60.0%
CTTACTGGCACAGACAGGCC+TGG + chr3_1:94104990-94105009 Msa0389360:CDS 60.0%
CGGTAACCACGTTGCAGCGA+AGG - chr3_1:94105049-94105068 None:intergenic 60.0%
GAGGCGGGACGGATCTTCTA+TGG - chr3_1:94105141-94105160 None:intergenic 60.0%
CGTCCCGCCTCTCCACAATA+AGG + chr3_1:94105150-94105169 Msa0389360:CDS 60.0%
TCGGATCATCACTCCCCCTG+AGG - chr3_1:94105193-94105212 None:intergenic 60.0%
GCTCCACACCTCGCTCTTTG+AGG + chr3_1:94106191-94106210 Msa0389360:intron 60.0%
GATCGGCGACACAGTACTGC+AGG + chr3_1:94106766-94106785 Msa0389360:CDS 60.0%
TCCAAGCCCCTCTTGCTGAG+GGG - chr3_1:94107012-94107031 None:intergenic 60.0%
GCAGCTCGACCAGCATTCGA+AGG - chr3_1:94107591-94107610 None:intergenic 60.0%
TGCTGGTCGAGCTGCGTACA+TGG + chr3_1:94107596-94107615 Msa0389360:three_prime_UTR 60.0%
CGGCTTGTCAGTGCCGTGTC+TGG + chr3_1:94103750-94103769 Msa0389360:intron 65.0%
CGCAGACCTTCGCTGCAACG+TGG + chr3_1:94105040-94105059 Msa0389360:CDS 65.0%
GAGCGAGGTGTGGAGCTTCC+AGG - chr3_1:94106187-94106206 None:intergenic 65.0%
CGGCCTCAAAGAGCGAGGTG+TGG - chr3_1:94106197-94106216 None:intergenic 65.0%
AAGCCCCTCTTGCTGAGGGG+AGG - chr3_1:94107009-94107028 None:intergenic 65.0%
TCCCCTCAGCAAGAGGGGCT+TGG + chr3_1:94107008-94107027 Msa0389360:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 94102410 94107754 94102410 ID=Msa0389360;Name=Msa0389360
chr3_1 mRNA 94102410 94107754 94102410 ID=Msa0389360-mRNA-1;Parent=Msa0389360;Name=Msa0389360-mRNA-1;_AED=0.18;_eAED=0.18;_QI=281|0.83|0.85|1|0.83|0.85|7|844|416
chr3_1 exon 94102410 94102737 94102410 ID=Msa0389360-mRNA-1:exon:26685;Parent=Msa0389360-mRNA-1
chr3_1 exon 94103564 94103609 94103564 ID=Msa0389360-mRNA-1:exon:26686;Parent=Msa0389360-mRNA-1
chr3_1 exon 94103927 94103963 94103927 ID=Msa0389360-mRNA-1:exon:26687;Parent=Msa0389360-mRNA-1
chr3_1 exon 94104084 94104151 94104084 ID=Msa0389360-mRNA-1:exon:26688;Parent=Msa0389360-mRNA-1
chr3_1 exon 94104906 94105511 94104906 ID=Msa0389360-mRNA-1:exon:26689;Parent=Msa0389360-mRNA-1
chr3_1 exon 94106059 94106163 94106059 ID=Msa0389360-mRNA-1:exon:26690;Parent=Msa0389360-mRNA-1
chr3_1 exon 94106569 94107754 94106569 ID=Msa0389360-mRNA-1:exon:26691;Parent=Msa0389360-mRNA-1
chr3_1 five_prime_UTR 94102410 94102690 94102410 ID=Msa0389360-mRNA-1:five_prime_utr;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94102691 94102737 94102691 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94103564 94103609 94103564 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94103927 94103963 94103927 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94104084 94104151 94104084 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94104906 94105511 94104906 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94106059 94106163 94106059 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 CDS 94106569 94106910 94106569 ID=Msa0389360-mRNA-1:cds;Parent=Msa0389360-mRNA-1
chr3_1 three_prime_UTR 94106911 94107754 94106911 ID=Msa0389360-mRNA-1:three_prime_utr;Parent=Msa0389360-mRNA-1
Gene Sequence

>Msa0389360

ATGGATGATGAATATGCGAAGCTTATAAGGAGGATGAACCCACCTAGGGTTGTGATTGATAATAATGCATGTGAAAACGCCACTGTTATTCAGGCTTATATTTCCTCTGATGGAGTTTGGTTTATGGATGTGTTTAATGTGACGGATCGAAATGGAAACAAGATCAAAGATAAAGAAGTCATTGATTATATTCAGAGGAGACTTGAAAAGAATCCGAGCTTTGAAACGTCAATGAGAGAGTCTGTTGGGGTTGTACCTACTGAAGAACACACTGTTATTGAACTTACTGGCACAGACAGGCCTGGTTTACTATCTGAAATCTGTGCAGTTCTCGCAGACCTTCGCTGCAACGTGGTTACCGCTGAGATTTGGACGCATAATACTAGAGCTGCAGCCGTAGTTCATGTAACCGATGATTCCAGTGGTTGTGCCATAGAAGATCCGTCCCGCCTCTCCACAATAAGGGATTTGCTTTGCAACGTCCTCAGGGGGAGTGATGATCCGAAGACAGCAAAAACTGCACTTTCACATCCTGGAGTTACGTATAGGGATAGAAGATTACATCAGATTATGTTTGCTGATAGGGACTATGAAAGAGTTGAAAGGGCAGGACTTAGAGAAAGAGATAAAGGTCCATTTCCGCATGTAACTGTCTCAGACTGTACTGAAAGGGATTATACTGTGGTTATCATGAGAGCGAAAGATCGACCGAAGCTGTTGTTTGATATTGTTTGCACTTTAACTGACATGCAGTATGTAGTTTTTCATGGTGTGGTTCAGACGGAAAGGACAGGGGCTTATCAGGAGTTTTATATTCGGCACGTTGATGGCTTTCCCATAAGGTCAGAGGCTGAGAGAGAACGGCTTATACAGTGTCTTGAAGCGGCAATTGAGAGGCGGGCATCTGAGGGGATGGAGCTGGAATTGTGCACAGAAGATCGTGTAGGACTCCTCTCGGATATCACAAGGATTTTCCGCGAGAACAGTTTATGTATCAAAAGAGCAGAAATATCAACAGAAAATGGGAAGGCAAAAGACACCTTTTACGTCACTGATGTAACTGGTAACCCAGTTGATCCAAAGATTATTGATTCAATCCGTAGACAGATCGGCGACACAGTACTGCAGGTGAAACATAACTCTAGTCTTTCACCAAAACCACCTCAAGGAACAACAATTGGCTTTCTCTTTGGAAGTTTTTTCAAGGCTCGATCTTTTCAGAATTTTAAGTTGATCAAATCATATTCCTAA
Protein sequence

>Msa0389360

MDDEYAKLIRRMNPPRVVIDNNACENATVIQAYISSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFPHVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRHVDGFPIRSEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPKIIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFFKARSFQNFKLIKSYS*