AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381180 MtrunA17_Chr3g0134861 98.639 441 6 0 1 441 1 441 0.0 910
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381180 AT1G27840.1 65.479 449 144 2 4 441 2 450 0.0 634
Msa0381180 AT1G27840.3 65.333 450 144 3 4 441 2 451 0.0 629
Msa0381180 AT1G19750.1 65.854 451 139 4 4 441 2 450 0.0 624
Msa0381180 AT1G27840.2 56.347 449 128 4 4 441 2 393 5.16e-180 508
Msa0381180 AT1G19750.2 65.672 335 100 4 120 441 1 333 4.05e-158 450
Msa0381180 AT2G16780.1 28.421 190 115 7 60 245 183 355 4.56e-11 64.7
Msa0381180 AT5G23430.1 27.481 131 92 2 99 229 10 137 7.10e-11 65.1
Msa0381180 AT5G23430.3 27.481 131 92 2 99 229 10 137 7.23e-11 65.1
Msa0381180 AT5G23430.2 27.481 131 92 2 99 229 10 137 7.23e-11 65.1

Find 122 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCGATTAGCGAAGGAATT+TGG 0.195129 3_1:-83174605 None:intergenic
ATGCTGTATCTTCAGCTATT+TGG 0.204367 3_1:+83174873 Msa0381180:CDS
CTACATCTACTAGATGAAAA+AGG 0.224652 3_1:-83180350 None:intergenic
TGTTTCATCCACTTCGTAAT+TGG 0.240425 3_1:-83174372 None:intergenic
CTGCACACCAATTATAAATT+AGG 0.259803 3_1:-83180192 None:intergenic
ATTCAAAGATGCTCCGAATA+TGG 0.262037 3_1:+83174538 Msa0381180:exon
AATAAGGTTTGTTCTGGTTT+TGG 0.263552 3_1:+83180245 Msa0381180:three_prime_UTR
CAGCATATTTATGAGCTAAT+TGG 0.265136 3_1:-83174856 None:intergenic
TTTGAGTCCACTTGAGTTCC+AGG 0.269395 3_1:+83174401 Msa0381180:five_prime_UTR
ATGATCATCATGTTAATGTT+TGG 0.280560 3_1:+83174933 Msa0381180:CDS
ATGTGTATACAACCTTAATT+TGG 0.284405 3_1:-83180452 None:intergenic
AACTGGCAGGCTATCATCTA+AGG 0.289330 3_1:+83176533 Msa0381180:CDS
CGTCTTTGTGATATTGCTTC+TGG 0.295957 3_1:+83175414 Msa0381180:CDS
GTTTGTGGGATGTGTAAATA+AGG 0.300439 3_1:+83180229 Msa0381180:three_prime_UTR
GGATGTAATTTCTGCTTCAT+TGG 0.303704 3_1:-83176558 None:intergenic
TGTGTAAATAAGGTTTGTTC+TGG 0.317866 3_1:+83180239 Msa0381180:three_prime_UTR
TGATCATCATGTTAATGTTT+GGG 0.326481 3_1:+83174934 Msa0381180:CDS
TTCTTCCACGTATCCATATT+CGG 0.329237 3_1:-83174551 None:intergenic
TCTTCTTCCTCCTTCACTCC+TGG 0.331611 3_1:-83174419 None:intergenic
GCAGTCTTATACACCTTTCC+AGG 0.331614 3_1:-83175330 None:intergenic
ACAAAGGTTGTTGCTATATC+TGG 0.335545 3_1:-83174484 None:intergenic
ATTTGGTATCCCATTGATAC+TGG 0.339602 3_1:+83174890 Msa0381180:CDS
TCATCGGCAATTGACCTTGC+AGG 0.342730 3_1:-83180002 None:intergenic
AGTGAATGGGTCTTGATTAC+CGG 0.350685 3_1:+83176191 Msa0381180:CDS
GCATTTGCTCATACTTTGTC+TGG 0.353584 3_1:+83175438 Msa0381180:CDS
GATCGTGCAACTGCTCATTA+TGG 0.366149 3_1:+83176600 Msa0381180:CDS
TCTGAGATTGATTTAAAACT+TGG 0.377456 3_1:-83176265 None:intergenic
CAGGCATTTGATATGTGGTC+TGG 0.378935 3_1:+83178854 Msa0381180:intron
TGAGTTGTAGCTAATTGAAT+AGG 0.379923 3_1:-83178551 None:intergenic
TCCTGAGTAGAAATCATTCC+TGG 0.383793 3_1:-83176579 None:intergenic
GGAACTCAAGTGGACTCAAA+TGG 0.416316 3_1:-83174398 None:intergenic
GATGAATAAACCAGTATCAA+TGG 0.420168 3_1:-83174900 None:intergenic
CATCTAGTAGATGTAGACTT+TGG 0.421561 3_1:+83180357 Msa0381180:three_prime_UTR
CTTCTGTTAAATCAATTTGA+AGG 0.421628 3_1:-83174706 None:intergenic
CTCAGTTACTCCAGCTATCC+TGG 0.425023 3_1:-83180139 None:intergenic
TTGGCAACTTTCTTCTGTCC+AGG 0.433328 3_1:-83176486 None:intergenic
AACATCAAAGACAGAGAATC+CGG 0.439433 3_1:+83174572 Msa0381180:CDS
CTGATTCAAGATTGAGATTG+TGG 0.440434 3_1:+83178465 Msa0381180:CDS
CAAACGTTCCGTGCTAACTA+AGG 0.443106 3_1:+83176316 Msa0381180:CDS
GAAGAAGACGACGACGACTT+TGG 0.446834 3_1:+83174437 Msa0381180:five_prime_UTR
ATCCCGACGACCAGGATAGC+TGG 0.447196 3_1:+83180129 Msa0381180:CDS
AATGGTCTGCTTCAAGTGAA+TGG 0.451347 3_1:+83176177 Msa0381180:CDS
GATACTGGTTTATTCATCAC+TGG 0.452740 3_1:+83174905 Msa0381180:CDS
GGCAGTGGACATCTGCCAAC+TGG 0.453300 3_1:+83176516 Msa0381180:CDS
CTGGTTTAATCAACAAGATC+AGG 0.457234 3_1:+83178925 Msa0381180:CDS
TTATTCAGGCATTTGATATG+TGG 0.464525 3_1:+83178849 Msa0381180:intron
CTCCAGCTATCCTGGTCGTC+GGG 0.468697 3_1:-83180131 None:intergenic
TAGCGGTTTACGACGTTCAC+CGG 0.471610 3_1:+83174765 Msa0381180:CDS
ACGATAGACAAATTCTTGTA+TGG 0.472177 3_1:+83179976 Msa0381180:CDS
ATGAATAAACCAGTATCAAT+GGG 0.473954 3_1:-83174899 None:intergenic
GAACTCAAGTGGACTCAAAT+GGG 0.479222 3_1:-83174397 None:intergenic
CTTCAAATTGATTTAACAGA+AGG 0.481429 3_1:+83174707 Msa0381180:CDS
CTCCGTCGAAATCGCTCGGC+CGG 0.482142 3_1:-83174784 None:intergenic
TTCTGTTAAATCAATTTGAA+GGG 0.489653 3_1:-83174705 None:intergenic
AAGAAAGTTGCCAATGGAAG+TGG 0.491768 3_1:+83176495 Msa0381180:CDS
TCTCATACGCTTATTGCTGC+TGG 0.491892 3_1:+83175372 Msa0381180:CDS
GTTGCCAATGGAAGTGGCAG+TGG 0.492604 3_1:+83176501 Msa0381180:CDS
CAAAGAGTGCACCATTTCAT+CGG 0.496860 3_1:-83180018 None:intergenic
GACGACGACGACTTTGGTTG+TGG 0.498634 3_1:+83174443 Msa0381180:five_prime_UTR
AATCAATCTCAGACGCAGCT+TGG 0.504418 3_1:+83176275 Msa0381180:CDS
CCGAGCGATTTCGACGGAGA+TGG 0.504812 3_1:+83174788 Msa0381180:CDS
GCTCATTATGGTGCTGTGAC+AGG 0.504885 3_1:+83176612 Msa0381180:CDS
AATTAATTGCGCCTTTGTGA+GGG 0.509005 3_1:-83174682 None:intergenic
CGAAGGAGATCCCGACGACC+AGG 0.513845 3_1:+83180121 Msa0381180:CDS
ATGGTCTGCTTCAAGTGAAT+GGG 0.514760 3_1:+83176178 Msa0381180:CDS
AGGCATTTGATATGTGGTCT+GGG 0.514949 3_1:+83178855 Msa0381180:intron
AGATTGTGGGATGTTGAGTC+AGG 0.515425 3_1:+83178479 Msa0381180:CDS
GTGGTGAATTTCAAAATGCC+TGG 0.516745 3_1:+83175312 Msa0381180:CDS
AATATGTGAAACACAAATGA+AGG 0.518798 3_1:-83180167 None:intergenic
ATTCTACCTACAAAAGCAAT+GGG 0.521916 3_1:-83180319 None:intergenic
AAGGTCAATTGCCGATGAAA+TGG 0.525899 3_1:+83180007 Msa0381180:CDS
GTGGACATCTGCCAACTGGC+AGG 0.526487 3_1:+83176520 Msa0381180:CDS
GAATTAATTGCGCCTTTGTG+AGG 0.526750 3_1:-83174683 None:intergenic
ATCTTGTTGATTAAACCAGC+AGG 0.528118 3_1:-83178921 None:intergenic
CACTTGAGTTCCAGGAGTGA+AGG 0.532137 3_1:+83174409 Msa0381180:five_prime_UTR
AATTCTACCTACAAAAGCAA+TGG 0.533055 3_1:-83180320 None:intergenic
TCCAGGAATGATTTCTACTC+AGG 0.535159 3_1:+83176578 Msa0381180:CDS
ATGAATCTATAAACTCCTGC+TGG 0.535705 3_1:+83178906 Msa0381180:CDS
ATGTCCACTGCCACTTCCAT+TGG 0.540411 3_1:-83176505 None:intergenic
GTGAATGGGTCTTGATTACC+GGG 0.543515 3_1:+83176192 Msa0381180:CDS
TCAATTTCAATGAGTAACAA+AGG 0.543759 3_1:-83174500 None:intergenic
ACTTTCACAACCCTCATGCA+TGG 0.546812 3_1:-83178596 None:intergenic
GGCATGTATCTCTTAAGTGC+AGG 0.549168 3_1:+83176654 Msa0381180:CDS
AGCACGGAACGTTTGAGTAG+AGG 0.550967 3_1:-83176308 None:intergenic
TCTGGTGAGTGGTGATACTA+CGG 0.566490 3_1:-83174466 None:intergenic
ACTCCAGCTATCCTGGTCGT+CGG 0.569326 3_1:-83180132 None:intergenic
TTCTTGTATGGTCACCTGCA+AGG 0.573554 3_1:+83179988 Msa0381180:CDS
TGATTCAAGATTGAGATTGT+GGG 0.573902 3_1:+83178466 Msa0381180:CDS
TTGAGTTCCAGGAGTGAAGG+AGG 0.574002 3_1:+83174412 Msa0381180:five_prime_UTR
TAGGTTTGCTTGTTTGCAAG+CGG 0.575957 3_1:-83178532 None:intergenic
CCATCTCCGTCGAAATCGCT+CGG 0.578915 3_1:-83174788 None:intergenic
CTTCACTCCTGGAACTCAAG+TGG 0.579327 3_1:-83174408 None:intergenic
TGTGATAAACTGCAGGGCGA+AGG 0.586427 3_1:+83180104 Msa0381180:intron
ATGAAGCAGAAATTACATCC+AGG 0.589532 3_1:+83176561 Msa0381180:CDS
ACGGAACGTTTGAGTAGAGG+TGG 0.594941 3_1:-83176305 None:intergenic
GGAGCAGATGTGAAACACAT+AGG 0.595373 3_1:+83180266 Msa0381180:three_prime_UTR
TTGCCACAGGAGTTGTACAC+AGG 0.597998 3_1:+83179948 Msa0381180:intron
GGATTGAAAGTAACAGAGGA+TGG 0.605564 3_1:+83176633 Msa0381180:CDS
GCTTATTGCTGCTGGAACTG+AGG 0.609754 3_1:+83175380 Msa0381180:CDS
ATTAATTGCGCCTTTGTGAG+GGG 0.611011 3_1:-83174681 None:intergenic
GGACAGAAGAAAGTTGCCAA+TGG 0.611679 3_1:+83176489 Msa0381180:CDS
ATGGTGTAATGACTGTTGAA+TGG 0.628070 3_1:+83176159 Msa0381180:CDS
ACTGGCAGGCTATCATCTAA+GGG 0.630654 3_1:+83176534 Msa0381180:CDS
CACCGGCCGAGCGATTTCGA+CGG 0.632724 3_1:+83174782 Msa0381180:CDS
GTGAACGTCGTAAACCGCTA+CGG 0.633953 3_1:-83174762 None:intergenic
CCACAGGAGTTGTACACAGG+TGG 0.635650 3_1:+83179951 Msa0381180:intron
GAATTTCAAAATGCCTGGAA+AGG 0.640053 3_1:+83175317 Msa0381180:CDS
TTAGATGATAGCCTGCCAGT+TGG 0.643193 3_1:-83176531 None:intergenic
GAATGGGTCTTGATTACCGG+GGG 0.646184 3_1:+83176194 Msa0381180:CDS
ATAGAAGTCCAATTACGAAG+TGG 0.655134 3_1:+83174364 Msa0381180:five_prime_UTR
TTGGGACACTAACACCACTC+AGG 0.656420 3_1:+83174952 Msa0381180:CDS
CATACTTTGTCTGGTCATCG+TGG 0.668716 3_1:+83175447 Msa0381180:CDS
CGGAACGTTTGAGTAGAGGT+GGG 0.672074 3_1:-83176304 None:intergenic
GACAGGATTGAAAGTAACAG+AGG 0.681612 3_1:+83176629 Msa0381180:CDS
TGCGTCAGATGCATCCGTAG+CGG 0.693318 3_1:+83174748 Msa0381180:CDS
ATGCTCCGAATATGGATACG+TGG 0.705582 3_1:+83174546 Msa0381180:exon
GAACTCGTTTCCCCTCACAA+AGG 0.708363 3_1:+83174671 Msa0381180:CDS
TTGTTGCTATATCTGGTGAG+TGG 0.725606 3_1:-83174477 None:intergenic
AACGCACGTACGATACTACG+TGG 0.751494 3_1:+83178878 Msa0381180:CDS
TGAATGGGTCTTGATTACCG+GGG 0.757650 3_1:+83176193 Msa0381180:CDS
AAGATTGAATAGAACCTGAG+TGG 0.761909 3_1:-83174966 None:intergenic
AATGGGTCTTGATTACCGGG+GGG 0.785902 3_1:+83176195 Msa0381180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATTAGAATCAATTA+CGG - chr3_1:83175094-83175113 None:intergenic 10.0%
!!! TTTTTTTTTTATATCTCATT+TGG - chr3_1:83177632-83177651 None:intergenic 10.0%
!! AAAATATTAATTTACAGTTA+AGG - chr3_1:83178000-83178019 None:intergenic 10.0%
!!! AACTAAATTTTACAATAAAA+AGG + chr3_1:83179361-83179380 Msa0381180:intron 10.0%
!!! ATATTTTCCTAATTTATAAT+TGG + chr3_1:83180185-83180204 Msa0381180:three_prime_UTR 10.0%
!!! TCTTTTCTTTAATTATTTTT+AGG + chr3_1:83180404-83180423 Msa0381180:three_prime_UTR 10.0%
!!! CTTTTCTTTAATTATTTTTA+GGG + chr3_1:83180405-83180424 Msa0381180:three_prime_UTR 10.0%
!!! TTTTCTTTAATTATTTTTAG+GGG + chr3_1:83180406-83180425 Msa0381180:three_prime_UTR 10.0%
!!! GATATTAAACTTTTTTTTTT+TGG + chr3_1:83180526-83180545 Msa0381180:three_prime_UTR 10.0%
!!! ATTTTAGTTAGAATCAATAT+TGG + chr3_1:83175172-83175191 Msa0381180:intron 15.0%
!! TAAGGAAAAAAAAAAAATAG+TGG + chr3_1:83175606-83175625 Msa0381180:intron 15.0%
!! AAGGAAAAAAAAAAAATAGT+GGG + chr3_1:83175607-83175626 Msa0381180:intron 15.0%
!!! ATACTATTCTAAAAACTTTA+GGG - chr3_1:83175699-83175718 None:intergenic 15.0%
!!! TATACTATTCTAAAAACTTT+AGG - chr3_1:83175700-83175719 None:intergenic 15.0%
!! TAACTTAAATTCAAGTATTT+AGG + chr3_1:83176409-83176428 Msa0381180:intron 15.0%
!! GGTTAAATCATATTTATATA+GGG - chr3_1:83177722-83177741 None:intergenic 15.0%
!! AGGTTAAATCATATTTATAT+AGG - chr3_1:83177723-83177742 None:intergenic 15.0%
!!! GCTTTTGTTAAATATAATAT+AGG - chr3_1:83177743-83177762 None:intergenic 15.0%
!! TATTATATTTAACAAAAGCT+TGG + chr3_1:83177744-83177763 Msa0381180:intron 15.0%
!!! ACTGTAAATTAATATTTTGA+CGG + chr3_1:83178002-83178021 Msa0381180:intron 15.0%
!!! TAAAGGTTTTTTTTTAACAA+CGG - chr3_1:83178666-83178685 None:intergenic 15.0%
!!! TCTATAAACATTTTTAATGA+TGG + chr3_1:83179338-83179357 Msa0381180:intron 15.0%
!! TTCTGTTAAATCAATTTGAA+GGG - chr3_1:83174708-83174727 None:intergenic 20.0%
!! AGAAATGATTATGACATATT+TGG + chr3_1:83175040-83175059 Msa0381180:intron 20.0%
!! GTTTACAAAACAAAAAACTA+CGG - chr3_1:83175545-83175564 None:intergenic 20.0%
!!! TACTATTCTAAAAACTTTAG+GGG - chr3_1:83175698-83175717 None:intergenic 20.0%
!!! ATTACATGCATGTATATTTT+TGG + chr3_1:83175971-83175990 Msa0381180:intron 20.0%
!!! TTGAATTTAAGTTAAGTACT+TGG - chr3_1:83176403-83176422 None:intergenic 20.0%
!! TCATTATCTCATATTATTAC+CGG + chr3_1:83177135-83177154 Msa0381180:intron 20.0%
!! AACTAATTATATTCAGCAAA+AGG - chr3_1:83177325-83177344 None:intergenic 20.0%
!!! TTTCCAGGTTAAAATTTTTA+GGG - chr3_1:83177404-83177423 None:intergenic 20.0%
!!! TCAATTAGTTTATTTCCAAT+TGG + chr3_1:83177445-83177464 Msa0381180:intron 20.0%
!!! CTGTAAATTAATATTTTGAC+GGG + chr3_1:83178003-83178022 Msa0381180:intron 20.0%
!!! TAATTTCTAAGAATACAATG+AGG + chr3_1:83178805-83178824 Msa0381180:intron 20.0%
!! AAAATGTAAACAGGAAAAAA+GGG - chr3_1:83179144-83179163 None:intergenic 20.0%
!! TAAAATGTAAACAGGAAAAA+AGG - chr3_1:83179145-83179164 None:intergenic 20.0%
!!! CTGTTTTATAGAAAAGAAAA+TGG + chr3_1:83179184-83179203 Msa0381180:intron 20.0%
!! AAAAAAGTAGAAGCAATTTA+TGG + chr3_1:83179394-83179413 Msa0381180:intron 20.0%
!!! ATTGATAATGAATGATTTCT+CGG - chr3_1:83179500-83179519 None:intergenic 20.0%
!! TCCAATAAGAATAGAATTTA+TGG + chr3_1:83179617-83179636 Msa0381180:intron 20.0%
!! ACCATAAATTCTATTCTTAT+TGG - chr3_1:83179621-83179640 None:intergenic 20.0%
!!! TTATGGTAGTTATTTTGAAA+AGG + chr3_1:83179634-83179653 Msa0381180:intron 20.0%
!! GGAATAAATTATGAGTTTAA+TGG - chr3_1:83179744-83179763 None:intergenic 20.0%
!! TTAAACTCATAATTTATTCC+AGG + chr3_1:83179744-83179763 Msa0381180:intron 20.0%
!!! GAGATTATTTTATATATGCA+TGG + chr3_1:83180053-83180072 Msa0381180:intron 20.0%
!!! TTTTATGTTTTGCCAAATTA+AGG + chr3_1:83180440-83180459 Msa0381180:three_prime_UTR 20.0%
!!! AAAAAAAAGGTGTATACATA+TGG + chr3_1:83180485-83180504 Msa0381180:three_prime_UTR 20.0%
!!! AAAAAAAGGTGTATACATAT+GGG + chr3_1:83180486-83180505 Msa0381180:three_prime_UTR 20.0%
! TCAATTTCAATGAGTAACAA+AGG - chr3_1:83174503-83174522 None:intergenic 25.0%
! CTTCTGTTAAATCAATTTGA+AGG - chr3_1:83174709-83174728 None:intergenic 25.0%
!! CTTCAAATTGATTTAACAGA+AGG + chr3_1:83174707-83174726 Msa0381180:CDS 25.0%
! ATGAATAAACCAGTATCAAT+GGG - chr3_1:83174902-83174921 None:intergenic 25.0%
! ATGATCATCATGTTAATGTT+TGG + chr3_1:83174933-83174952 Msa0381180:CDS 25.0%
! TGATCATCATGTTAATGTTT+GGG + chr3_1:83174934-83174953 Msa0381180:CDS 25.0%
!! CGTCATACTGATAATATTTT+TGG + chr3_1:83174994-83175013 Msa0381180:intron 25.0%
! TCCTATTGTAAATTGATTGT+AGG + chr3_1:83175287-83175306 Msa0381180:intron 25.0%
! ACCTACAATCAATTTACAAT+AGG - chr3_1:83175291-83175310 None:intergenic 25.0%
! TATTGTAAATTGATTGTAGG+TGG + chr3_1:83175290-83175309 Msa0381180:intron 25.0%
! TATCTGTTTAATCTTAGACA+CGG - chr3_1:83175588-83175607 None:intergenic 25.0%
!! TGTCTAAGATTAAACAGATA+AGG + chr3_1:83175588-83175607 Msa0381180:intron 25.0%
!! ACTATTCTAAAAACTTTAGG+GGG - chr3_1:83175697-83175716 None:intergenic 25.0%
! TTGCACAAGGAAAAAAATAA+AGG - chr3_1:83175826-83175845 None:intergenic 25.0%
!!! TTTATTTTTTTCCTTGTGCA+AGG + chr3_1:83175825-83175844 Msa0381180:intron 25.0%
!!! TTATTTTTTATCCTTGCACA+AGG - chr3_1:83175839-83175858 None:intergenic 25.0%
!!! TTTGTTTTCACCAGAATTAA+GGG - chr3_1:83175892-83175911 None:intergenic 25.0%
! AGAATAGAATTATGACATAC+TGG + chr3_1:83176041-83176060 Msa0381180:intron 25.0%
! GAATAGAATTATGACATACT+GGG + chr3_1:83176042-83176061 Msa0381180:intron 25.0%
! ACATAAAAGAAATCATGTGA+TGG - chr3_1:83176136-83176155 None:intergenic 25.0%
!! ATGATTTCTTTTATGTCAGA+TGG + chr3_1:83176140-83176159 Msa0381180:intron 25.0%
!! TCTGAGATTGATTTAAAACT+TGG - chr3_1:83176268-83176287 None:intergenic 25.0%
! AAAAAAAACCTTAGTTAGCA+CGG - chr3_1:83176327-83176346 None:intergenic 25.0%
!!! ATGTCTAACTTTTTTGGATA+TGG - chr3_1:83176811-83176830 None:intergenic 25.0%
! ATAATATGTTCAGTATTAGC+AGG - chr3_1:83176947-83176966 None:intergenic 25.0%
!! TGCTTTCAAATATTTTCACA+AGG + chr3_1:83176974-83176993 Msa0381180:intron 25.0%
! AAATTGCTATAGGTAATCAA+GGG + chr3_1:83177036-83177055 Msa0381180:intron 25.0%
! TTGAATGTAATAACATGTGT+CGG - chr3_1:83177110-83177129 None:intergenic 25.0%
! TAAATATAAGATATGCCTGA+AGG - chr3_1:83177201-83177220 None:intergenic 25.0%
! CAGGCATATCTTATATTTAA+CGG + chr3_1:83177202-83177221 Msa0381180:intron 25.0%
!!! GATTGGTTTTGAGAATTTAT+TGG - chr3_1:83177271-83177290 None:intergenic 25.0%
!! GTTTCCAGGTTAAAATTTTT+AGG - chr3_1:83177405-83177424 None:intergenic 25.0%
!! TCCAATTGGTAATATAATTG+AGG + chr3_1:83177459-83177478 Msa0381180:intron 25.0%
! ACCTCAATTATATTACCAAT+TGG - chr3_1:83177463-83177482 None:intergenic 25.0%
! TATAGGGATATACATCTATA+AGG - chr3_1:83177706-83177725 None:intergenic 25.0%
! TTTCCTCAACTGTAAATTAA+GGG + chr3_1:83177881-83177900 Msa0381180:intron 25.0%
! CTTCTACTATGTTTATTTCA+CGG - chr3_1:83177921-83177940 None:intergenic 25.0%
!!! CTACTATCATGTTTATTTTG+TGG - chr3_1:83177952-83177971 None:intergenic 25.0%
!! AAGTATCTTTTGTATTTGTG+CGG - chr3_1:83178696-83178715 None:intergenic 25.0%
!! AAATATAAAGAAGTGCACAA+GGG + chr3_1:83178744-83178763 Msa0381180:intron 25.0%
! CTTAGAAATTAGTTACTTAG+CGG - chr3_1:83178796-83178815 None:intergenic 25.0%
! TAAGAGGATAAAATGTAAAC+AGG - chr3_1:83179153-83179172 None:intergenic 25.0%
! AACAGTGAAATTAGAATAAG+AGG - chr3_1:83179169-83179188 None:intergenic 25.0%
!! AGTCCTTTTTCTTCTTTAAT+CGG + chr3_1:83179258-83179277 Msa0381180:intron 25.0%
! TAAGATTAGAGACTTTAATG+AGG + chr3_1:83179295-83179314 Msa0381180:intron 25.0%
! CATCAAAATATTTCCTCATA+GGG - chr3_1:83179584-83179603 None:intergenic 25.0%
! ACATCAAAATATTTCCTCAT+AGG - chr3_1:83179585-83179604 None:intergenic 25.0%
! TGAAAAGGCAGTTATAAAAT+AGG + chr3_1:83179649-83179668 Msa0381180:intron 25.0%
!! ATTAAAAAGTGCATGAGATA+CGG - chr3_1:83179918-83179937 None:intergenic 25.0%
! AATATGTGAAACACAAATGA+AGG - chr3_1:83180170-83180189 None:intergenic 25.0%
!! TTTGTATTTTGCATGTTTGT+GGG + chr3_1:83180215-83180234 Msa0381180:three_prime_UTR 25.0%
! TACATCTACTAGATGAAAAA+GGG - chr3_1:83180352-83180371 None:intergenic 25.0%
! ATGTGTATACAACCTTAATT+TGG - chr3_1:83180455-83180474 None:intergenic 25.0%
! CATATCTGTACTCAAAAAAA+AGG + chr3_1:83180472-83180491 Msa0381180:three_prime_UTR 25.0%
CAGCATATTTATGAGCTAAT+TGG - chr3_1:83174859-83174878 None:intergenic 30.0%
GATGAATAAACCAGTATCAA+TGG - chr3_1:83174903-83174922 None:intergenic 30.0%
TAGTTAGAATCAATATTGGC+AGG + chr3_1:83175176-83175195 Msa0381180:intron 30.0%
AGATGCAAAAATAGTAACTC+CGG - chr3_1:83175803-83175822 None:intergenic 30.0%
! TTGTTTTCACCAGAATTAAG+GGG - chr3_1:83175891-83175910 None:intergenic 30.0%
!!! CTTTGTTTTCACCAGAATTA+AGG - chr3_1:83175893-83175912 None:intergenic 30.0%
CTTAATTCTGGTGAAAACAA+AGG + chr3_1:83175891-83175910 Msa0381180:intron 30.0%
!! TTATGTTAAGCATTGGATGT+TGG - chr3_1:83175932-83175951 None:intergenic 30.0%
ACATCCAATGCTTAACATAA+CGG + chr3_1:83175932-83175951 Msa0381180:intron 30.0%
TGATGTTATGTATTGTCGAA+AGG + chr3_1:83176102-83176121 Msa0381180:intron 30.0%
TTTGATTCCTGTGAGTAATA+AGG - chr3_1:83176453-83176472 None:intergenic 30.0%
!!! CTCGTAATGTCTAACTTTTT+TGG - chr3_1:83176817-83176836 None:intergenic 30.0%
CAATGCATTCAAATTGCTAT+AGG + chr3_1:83177026-83177045 Msa0381180:intron 30.0%
CAAATTGCTATAGGTAATCA+AGG + chr3_1:83177035-83177054 Msa0381180:intron 30.0%
AATTGCTATAGGTAATCAAG+GGG + chr3_1:83177037-83177056 Msa0381180:intron 30.0%
ATGTCGATGATATAAAGCAA+AGG - chr3_1:83177066-83177085 None:intergenic 30.0%
GAATATTCATTGTACAGAAG+CGG - chr3_1:83177242-83177261 None:intergenic 30.0%
!! TAATTGAGGTTCTGAAAAGT+TGG + chr3_1:83177473-83177492 Msa0381180:intron 30.0%
TAGAAGAGAAGAAATACATC+AGG + chr3_1:83177531-83177550 Msa0381180:intron 30.0%
AGAAGAGAAGAAATACATCA+GGG + chr3_1:83177532-83177551 Msa0381180:intron 30.0%
AGAAAAATAGAACACAGTAG+AGG + chr3_1:83177579-83177598 Msa0381180:intron 30.0%
!! TATCATACATTGATTCCTGA+CGG + chr3_1:83177790-83177809 Msa0381180:intron 30.0%
GATAGTAGAAGACAAATCAT+TGG + chr3_1:83177851-83177870 Msa0381180:intron 30.0%
CTTTCCTCAACTGTAAATTA+AGG + chr3_1:83177880-83177899 Msa0381180:intron 30.0%
GATAGTAGAAGACAAATCAT+CGG + chr3_1:83177851-83177870 Msa0381180:intron 30.0%
! AAAAGATTGGCTATTGCTAT+AGG - chr3_1:83178060-83178079 None:intergenic 30.0%
AGACATATACAGCAAAAGAT+TGG - chr3_1:83178073-83178092 None:intergenic 30.0%
TTTGGTCATAAACATTCACA+AGG - chr3_1:83178096-83178115 None:intergenic 30.0%
!!! GTGACTACTAATTGTTGTTT+TGG - chr3_1:83178114-83178133 None:intergenic 30.0%
TTGATGCATTACAAGAAAAC+AGG - chr3_1:83178384-83178403 None:intergenic 30.0%
TGATTCAAGATTGAGATTGT+GGG + chr3_1:83178466-83178485 Msa0381180:CDS 30.0%
TGAGTTGTAGCTAATTGAAT+AGG - chr3_1:83178554-83178573 None:intergenic 30.0%
! ATTTGTGCGGCTAATTTTAA+AGG - chr3_1:83178683-83178702 None:intergenic 30.0%
! CAAATATAAAGAAGTGCACA+AGG + chr3_1:83178743-83178762 Msa0381180:intron 30.0%
TTATTCAGGCATTTGATATG+TGG + chr3_1:83178849-83178868 Msa0381180:intron 30.0%
AAACAGATTCTACCATTTGA+CGG - chr3_1:83179004-83179023 None:intergenic 30.0%
TAACTGTAAAATGAACATCC+CGG - chr3_1:83179060-83179079 None:intergenic 30.0%
AAAGAAAATGGAAGAGATAC+AGG + chr3_1:83179196-83179215 Msa0381180:intron 30.0%
AGTCCGATTAAAGAAGAAAA+AGG - chr3_1:83179264-83179283 None:intergenic 30.0%
!! TTGTCTAGTTGGTATTCTTT+TGG + chr3_1:83179543-83179562 Msa0381180:intron 30.0%
AAAATTGAATGAACCCTATG+AGG + chr3_1:83179568-83179587 Msa0381180:intron 30.0%
AACTAATCGTCTTACTATGT+AGG - chr3_1:83179675-83179694 None:intergenic 30.0%
! GTAAGACGATTAGTTCTTAT+TGG + chr3_1:83179680-83179699 Msa0381180:intron 30.0%
TAAATTGAGATCCATATCCA+AGG - chr3_1:83179800-83179819 None:intergenic 30.0%
ATATCATTCTCCAACTCTAT+TGG + chr3_1:83179845-83179864 Msa0381180:intron 30.0%
ATACTTCAATCCAATAGAGT+TGG - chr3_1:83179858-83179877 None:intergenic 30.0%
! TTAAAAAGTGCATGAGATAC+GGG - chr3_1:83179917-83179936 None:intergenic 30.0%
!!! AATGATTTTGTTATTGCCAC+AGG + chr3_1:83179935-83179954 Msa0381180:intron 30.0%
ACGATAGACAAATTCTTGTA+TGG + chr3_1:83179976-83179995 Msa0381180:CDS 30.0%
CTGCACACCAATTATAAATT+AGG - chr3_1:83180195-83180214 None:intergenic 30.0%
! GTTTGTATTTTGCATGTTTG+TGG + chr3_1:83180214-83180233 Msa0381180:three_prime_UTR 30.0%
! TGTGTAAATAAGGTTTGTTC+TGG + chr3_1:83180239-83180258 Msa0381180:three_prime_UTR 30.0%
!!! AATAAGGTTTGTTCTGGTTT+TGG + chr3_1:83180245-83180264 Msa0381180:three_prime_UTR 30.0%
ATTCTACCTACAAAAGCAAT+GGG - chr3_1:83180322-83180341 None:intergenic 30.0%
AATTCTACCTACAAAAGCAA+TGG - chr3_1:83180323-83180342 None:intergenic 30.0%
CTACATCTACTAGATGAAAA+AGG - chr3_1:83180353-83180372 None:intergenic 30.0%
ATAGAAGTCCAATTACGAAG+TGG + chr3_1:83174364-83174383 Msa0381180:five_prime_UTR 35.0%
TGTTTCATCCACTTCGTAAT+TGG - chr3_1:83174375-83174394 None:intergenic 35.0%
ACAAAGGTTGTTGCTATATC+TGG - chr3_1:83174487-83174506 None:intergenic 35.0%
!! TCGGAGCATCTTTGAATTTT+TGG - chr3_1:83174535-83174554 None:intergenic 35.0%
ATTCAAAGATGCTCCGAATA+TGG + chr3_1:83174538-83174557 Msa0381180:exon 35.0%
TTCTTCCACGTATCCATATT+CGG - chr3_1:83174554-83174573 None:intergenic 35.0%
AACATCAAAGACAGAGAATC+CGG + chr3_1:83174572-83174591 Msa0381180:CDS 35.0%
! TGATTTTATGCGATTAGCGA+AGG - chr3_1:83174615-83174634 None:intergenic 35.0%
AATTAATTGCGCCTTTGTGA+GGG - chr3_1:83174685-83174704 None:intergenic 35.0%
ATGCTGTATCTTCAGCTATT+TGG + chr3_1:83174873-83174892 Msa0381180:CDS 35.0%
ATTTGGTATCCCATTGATAC+TGG + chr3_1:83174890-83174909 Msa0381180:CDS 35.0%
!! GATACTGGTTTATTCATCAC+TGG + chr3_1:83174905-83174924 Msa0381180:CDS 35.0%
AAGATTGAATAGAACCTGAG+TGG - chr3_1:83174969-83174988 None:intergenic 35.0%
CATGCAGATACATTCATCAA+AGG - chr3_1:83175132-83175151 None:intergenic 35.0%
!! TGTCTCTAACACTAGTTCTA+CGG - chr3_1:83175230-83175249 None:intergenic 35.0%
TGTAAATTGATTGTAGGTGG+TGG + chr3_1:83175293-83175312 Msa0381180:intron 35.0%
GAATTTCAAAATGCCTGGAA+AGG + chr3_1:83175317-83175336 Msa0381180:CDS 35.0%
TTCCAACATACTCATTTGTG+TGG + chr3_1:83175498-83175517 Msa0381180:intron 35.0%
! GGTCTTTACTAGTCTAAACT+TGG - chr3_1:83175567-83175586 None:intergenic 35.0%
! ATTCTAAAAACTTTAGGGGG+TGG - chr3_1:83175694-83175713 None:intergenic 35.0%
GTGCTAATCATTATGCTGAA+GGG - chr3_1:83175749-83175768 None:intergenic 35.0%
AGTGCTAATCATTATGCTGA+AGG - chr3_1:83175750-83175769 None:intergenic 35.0%
AAGAATCAACCCCTTAATTC+TGG + chr3_1:83175879-83175898 Msa0381180:intron 35.0%
GCTTGACATATTTCACAAGT+GGG - chr3_1:83175997-83176016 None:intergenic 35.0%
AGCTTGACATATTTCACAAG+TGG - chr3_1:83175998-83176017 None:intergenic 35.0%
TTATGACATACTGGGAACTT+AGG + chr3_1:83176050-83176069 Msa0381180:intron 35.0%
TGTTATGTATTGTCGAAAGG+AGG + chr3_1:83176105-83176124 Msa0381180:intron 35.0%
ATGGTGTAATGACTGTTGAA+TGG + chr3_1:83176159-83176178 Msa0381180:CDS 35.0%
!! TGATGGTGCAATACGTTTTT+GGG + chr3_1:83176220-83176239 Msa0381180:CDS 35.0%
!!! CAATACGTTTTTGGGACATA+AGG + chr3_1:83176228-83176247 Msa0381180:CDS 35.0%
TCAAATACAAAAATGCGTCC+TGG + chr3_1:83176468-83176487 Msa0381180:CDS 35.0%
GGATGTAATTTCTGCTTCAT+TGG - chr3_1:83176561-83176580 None:intergenic 35.0%
ATGAAGCAGAAATTACATCC+AGG + chr3_1:83176561-83176580 Msa0381180:CDS 35.0%
TTAGACATTACGAGTTCAAG+CGG + chr3_1:83176823-83176842 Msa0381180:intron 35.0%
CATGCTTTATGTCTAGTGAT+TGG - chr3_1:83177288-83177307 None:intergenic 35.0%
CAATCACTAGACATAAAGCA+TGG + chr3_1:83177286-83177305 Msa0381180:intron 35.0%
! ATCTCTTCTCTGAAAGTCAT+AGG + chr3_1:83177363-83177382 Msa0381180:intron 35.0%
AGTCATAGGCAGACTTTATT+TGG + chr3_1:83177377-83177396 Msa0381180:intron 35.0%
!! GGACCCTAAAAATTTTAACC+TGG + chr3_1:83177398-83177417 Msa0381180:intron 35.0%
AAAAGCTTGGACATCACATA+TGG + chr3_1:83177757-83177776 Msa0381180:intron 35.0%
!! ATCATACATTGATTCCTGAC+GGG + chr3_1:83177791-83177810 Msa0381180:intron 35.0%
CAACCCTTAATTTACAGTTG+AGG - chr3_1:83177887-83177906 None:intergenic 35.0%
ACAATTAGTAGTCACTCAAG+AGG + chr3_1:83178119-83178138 Msa0381180:intron 35.0%
CTGATTCAAGATTGAGATTG+TGG + chr3_1:83178465-83178484 Msa0381180:CDS 35.0%
ATTAGTTACTTAGCGGTTGA+GGG - chr3_1:83178789-83178808 None:intergenic 35.0%
AATTAGTTACTTAGCGGTTG+AGG - chr3_1:83178790-83178809 None:intergenic 35.0%
ATCTCACTTCTGGATTATTC+AGG + chr3_1:83178835-83178854 Msa0381180:intron 35.0%
ATGAATCTATAAACTCCTGC+TGG + chr3_1:83178906-83178925 Msa0381180:CDS 35.0%
! ATCTTGTTGATTAAACCAGC+AGG - chr3_1:83178924-83178943 None:intergenic 35.0%
CTGGTTTAATCAACAAGATC+AGG + chr3_1:83178925-83178944 Msa0381180:CDS 35.0%
! TTTTCCTGCTCTGTTATAAG+TGG + chr3_1:83178977-83178996 Msa0381180:intron 35.0%
GTCAAATGGTAGAATCTGTT+TGG + chr3_1:83179003-83179022 Msa0381180:intron 35.0%
!! CGTATGAGTTGATTAGAGAA+GGG - chr3_1:83179096-83179115 None:intergenic 35.0%
CCTTCTCTAATCAACTCATA+CGG + chr3_1:83179094-83179113 Msa0381180:intron 35.0%
GAAAAAAGGGAAGGAAAGTA+AGG - chr3_1:83179131-83179150 None:intergenic 35.0%
TGTAAACAGGAAAAAAGGGA+AGG - chr3_1:83179140-83179159 None:intergenic 35.0%
ATCAACTTGAAACCGATCAA+TGG + chr3_1:83179422-83179441 Msa0381180:intron 35.0%
GTAAAATCAGTAGGTTGTTG+TGG - chr3_1:83179478-83179497 None:intergenic 35.0%
GATTTCTCGGTAAAATCAGT+AGG - chr3_1:83179487-83179506 None:intergenic 35.0%
AAAGTCATTGCTTGTCTAGT+TGG + chr3_1:83179532-83179551 Msa0381180:intron 35.0%
! GCAAAACTATTTTACACCGT+TGG + chr3_1:83179711-83179730 Msa0381180:intron 35.0%
!! TACTGGTTGTTATTTCATCC+TGG - chr3_1:83179765-83179784 None:intergenic 35.0%
TATCACAAGGTCAGACATAT+TGG - chr3_1:83180091-83180110 None:intergenic 35.0%
GTTTGTGGGATGTGTAAATA+AGG + chr3_1:83180229-83180248 Msa0381180:three_prime_UTR 35.0%
CATCTAGTAGATGTAGACTT+TGG + chr3_1:83180357-83180376 Msa0381180:three_prime_UTR 35.0%
! GAACTCAAGTGGACTCAAAT+GGG - chr3_1:83174400-83174419 None:intergenic 40.0%
TTGTTGCTATATCTGGTGAG+TGG - chr3_1:83174480-83174499 None:intergenic 40.0%
! GGAATTTGGACGCAATTTTC+CGG - chr3_1:83174594-83174613 None:intergenic 40.0%
ATGCGATTAGCGAAGGAATT+TGG - chr3_1:83174608-83174627 None:intergenic 40.0%
ATTAATTGCGCCTTTGTGAG+GGG - chr3_1:83174684-83174703 None:intergenic 40.0%
GAATTAATTGCGCCTTTGTG+AGG - chr3_1:83174686-83174705 None:intergenic 40.0%
GCAGATACATTCATCAAAGG+TGG - chr3_1:83175129-83175148 None:intergenic 40.0%
GTGGTGAATTTCAAAATGCC+TGG + chr3_1:83175312-83175331 Msa0381180:CDS 40.0%
CGTCTTTGTGATATTGCTTC+TGG + chr3_1:83175414-83175433 Msa0381180:CDS 40.0%
GCATTTGCTCATACTTTGTC+TGG + chr3_1:83175438-83175457 Msa0381180:CDS 40.0%
GACCACACAAATGAGTATGT+TGG - chr3_1:83175503-83175522 None:intergenic 40.0%
GTGAAACTGTGTTTCGTAAG+TGG + chr3_1:83175640-83175659 Msa0381180:intron 40.0%
TGGAAATCGTCCTTAGAACT+GGG + chr3_1:83175660-83175679 Msa0381180:intron 40.0%
TATACGAACCAGCAACATGT+AGG + chr3_1:83175769-83175788 Msa0381180:intron 40.0%
TCTATCTAGTCACCTATCAG+TGG - chr3_1:83176024-83176043 None:intergenic 40.0%
AATGGTCTGCTTCAAGTGAA+TGG + chr3_1:83176177-83176196 Msa0381180:CDS 40.0%
ATGGTCTGCTTCAAGTGAAT+GGG + chr3_1:83176178-83176197 Msa0381180:CDS 40.0%
AGTGAATGGGTCTTGATTAC+CGG + chr3_1:83176191-83176210 Msa0381180:CDS 40.0%
!! GTGATGGTGCAATACGTTTT+TGG + chr3_1:83176219-83176238 Msa0381180:CDS 40.0%
AGACTCGCAAATTACGAACA+AGG - chr3_1:83176363-83176382 None:intergenic 40.0%
CCTGTGAGTAATAAGGCTTT+AGG - chr3_1:83176446-83176465 None:intergenic 40.0%
!! CCTAAAGCCTTATTACTCAC+AGG + chr3_1:83176443-83176462 Msa0381180:intron 40.0%
AAGAAAGTTGCCAATGGAAG+TGG + chr3_1:83176495-83176514 Msa0381180:CDS 40.0%
TCCAGGAATGATTTCTACTC+AGG + chr3_1:83176578-83176597 Msa0381180:CDS 40.0%
TCCTGAGTAGAAATCATTCC+TGG - chr3_1:83176582-83176601 None:intergenic 40.0%
GACAGGATTGAAAGTAACAG+AGG + chr3_1:83176629-83176648 Msa0381180:CDS 40.0%
GGATTGAAAGTAACAGAGGA+TGG + chr3_1:83176633-83176652 Msa0381180:CDS 40.0%
! CATGGGTCTATTGACTAGTA+TGG - chr3_1:83176698-83176717 None:intergenic 40.0%
ATGAGACACTGTGCTAACAT+GGG - chr3_1:83176715-83176734 None:intergenic 40.0%
TATGAGACACTGTGCTAACA+TGG - chr3_1:83176716-83176735 None:intergenic 40.0%
TTAGCACAGTGTCTCATACA+AGG + chr3_1:83176718-83176737 Msa0381180:intron 40.0%
ATGCATTGCAGATTGACAGA+AGG - chr3_1:83177014-83177033 None:intergenic 40.0%
!! ATTATTACCGGTGTCATGTC+CGG + chr3_1:83177147-83177166 Msa0381180:intron 40.0%
CTAGACATAAAGCATGGTCT+TGG + chr3_1:83177292-83177311 Msa0381180:intron 40.0%
ACTGTGTCTATATGGTTTCC+AGG - chr3_1:83177419-83177438 None:intergenic 40.0%
GACGATTCACTGTGTCTATA+TGG - chr3_1:83177427-83177446 None:intergenic 40.0%
AGAAGAAATACATCAGGGTG+AGG + chr3_1:83177537-83177556 Msa0381180:intron 40.0%
!! TCATACATTGATTCCTGACG+GGG + chr3_1:83177792-83177811 Msa0381180:intron 40.0%
ACAGAGGGCAGATAAGTATT+AGG + chr3_1:83178032-83178051 Msa0381180:intron 40.0%
TTGATGTTCTGTCTGATGAC+AGG + chr3_1:83178440-83178459 Msa0381180:intron 40.0%
TGATGTTCTGTCTGATGACA+GGG + chr3_1:83178441-83178460 Msa0381180:intron 40.0%
! TAGGTTTGCTTGTTTGCAAG+CGG - chr3_1:83178535-83178554 None:intergenic 40.0%
CATGCATGGAACAAAAACGA+CGG - chr3_1:83178585-83178604 None:intergenic 40.0%
!! TCGTTTTTGTTCCATGCATG+AGG + chr3_1:83178585-83178604 Msa0381180:CDS 40.0%
! CGTTTTTGTTCCATGCATGA+GGG + chr3_1:83178586-83178605 Msa0381180:CDS 40.0%
ATGAGGGTTGTGAAAGTAAG+TGG + chr3_1:83178602-83178621 Msa0381180:intron 40.0%
TTAGTTACTTAGCGGTTGAG+GGG - chr3_1:83178788-83178807 None:intergenic 40.0%
AGGCATTTGATATGTGGTCT+GGG + chr3_1:83178855-83178874 Msa0381180:intron 40.0%
GTTATAAGTGGTCCGTCAAA+TGG + chr3_1:83178989-83179008 Msa0381180:intron 40.0%
GTAGAATCTGTTTGGTTGTC+AGG + chr3_1:83179011-83179030 Msa0381180:intron 40.0%
!! CCGTATGAGTTGATTAGAGA+AGG - chr3_1:83179097-83179116 None:intergenic 40.0%
TAATCAACTCATACGGCGTA+TGG + chr3_1:83179101-83179120 Msa0381180:intron 40.0%
AAATCAGTAGGTTGTTGTGG+CGG - chr3_1:83179475-83179494 None:intergenic 40.0%
GTTTAATGGCTATGCACCAA+CGG - chr3_1:83179730-83179749 None:intergenic 40.0%
AAGGTCAATTGCCGATGAAA+TGG + chr3_1:83180007-83180026 Msa0381180:CDS 40.0%
! CAAAGAGTGCACCATTTCAT+CGG - chr3_1:83180021-83180040 None:intergenic 40.0%
ACAAGGTCAGACATATTGGA+AGG - chr3_1:83180087-83180106 None:intergenic 40.0%
TGACCTTGTGATAAACTGCA+GGG + chr3_1:83180098-83180117 Msa0381180:intron 40.0%
! GGAACTCAAGTGGACTCAAA+TGG - chr3_1:83174401-83174420 None:intergenic 45.0%
TTTGAGTCCACTTGAGTTCC+AGG + chr3_1:83174401-83174420 Msa0381180:five_prime_UTR 45.0%
TCTGGTGAGTGGTGATACTA+CGG - chr3_1:83174469-83174488 None:intergenic 45.0%
ATGCTCCGAATATGGATACG+TGG + chr3_1:83174546-83174565 Msa0381180:exon 45.0%
! GCAGTCTTATACACCTTTCC+AGG - chr3_1:83175333-83175352 None:intergenic 45.0%
TCTCATACGCTTATTGCTGC+TGG + chr3_1:83175372-83175391 Msa0381180:CDS 45.0%
CATACTTTGTCTGGTCATCG+TGG + chr3_1:83175447-83175466 Msa0381180:CDS 45.0%
GTGGAAATCGTCCTTAGAAC+TGG + chr3_1:83175659-83175678 Msa0381180:intron 45.0%
GGAAATCGTCCTTAGAACTG+GGG + chr3_1:83175661-83175680 Msa0381180:intron 45.0%
GAAATCGTCCTTAGAACTGG+GGG + chr3_1:83175662-83175681 Msa0381180:intron 45.0%
CACTCAAACCTACATGTTGC+TGG - chr3_1:83175780-83175799 None:intergenic 45.0%
CAACATGTAGGTTTGAGTGC+CGG + chr3_1:83175781-83175800 Msa0381180:intron 45.0%
AGCGCCGTTATGTTAAGCAT+TGG - chr3_1:83175939-83175958 None:intergenic 45.0%
ATCTAGTCACCTATCAGTGG+TGG - chr3_1:83176021-83176040 None:intergenic 45.0%
GTGAATGGGTCTTGATTACC+GGG + chr3_1:83176192-83176211 Msa0381180:CDS 45.0%
TGAATGGGTCTTGATTACCG+GGG + chr3_1:83176193-83176212 Msa0381180:CDS 45.0%
AATCAATCTCAGACGCAGCT+TGG + chr3_1:83176275-83176294 Msa0381180:CDS 45.0%
CAAACGTTCCGTGCTAACTA+AGG + chr3_1:83176316-83176335 Msa0381180:CDS 45.0%
TTGGCAACTTTCTTCTGTCC+AGG - chr3_1:83176489-83176508 None:intergenic 45.0%
GGACAGAAGAAAGTTGCCAA+TGG + chr3_1:83176489-83176508 Msa0381180:CDS 45.0%
TTAGATGATAGCCTGCCAGT+TGG - chr3_1:83176534-83176553 None:intergenic 45.0%
AACTGGCAGGCTATCATCTA+AGG + chr3_1:83176533-83176552 Msa0381180:CDS 45.0%
ACTGGCAGGCTATCATCTAA+GGG + chr3_1:83176534-83176553 Msa0381180:CDS 45.0%
GATCGTGCAACTGCTCATTA+TGG + chr3_1:83176600-83176619 Msa0381180:CDS 45.0%
GGCATGTATCTCTTAAGTGC+AGG + chr3_1:83176654-83176673 Msa0381180:CDS 45.0%
!! AACATGTGTCGGTGTTGTGT+CGG - chr3_1:83177099-83177118 None:intergenic 45.0%
CACAACAGTCTTGCACTCAA+TGG + chr3_1:83177658-83177677 Msa0381180:intron 45.0%
AGTCTTGCACTCAATGGAAC+TGG + chr3_1:83177664-83177683 Msa0381180:intron 45.0%
!! CATACATTGATTCCTGACGG+GGG + chr3_1:83177793-83177812 Msa0381180:intron 45.0%
!! ATACATTGATTCCTGACGGG+GGG + chr3_1:83177794-83177813 Msa0381180:intron 45.0%
AGATTGTGGGATGTTGAGTC+AGG + chr3_1:83178479-83178498 Msa0381180:CDS 45.0%
ACTTTCACAACCCTCATGCA+TGG - chr3_1:83178599-83178618 None:intergenic 45.0%
AGGAACACTGATCTCACTTC+TGG + chr3_1:83178825-83178844 Msa0381180:intron 45.0%
CAGGCATTTGATATGTGGTC+TGG + chr3_1:83178854-83178873 Msa0381180:intron 45.0%
GATCAGGTATGTTCAACAGC+TGG + chr3_1:83178941-83178960 Msa0381180:intron 45.0%
ATCTGTTTGGTTGTCAGGTC+TGG + chr3_1:83179016-83179035 Msa0381180:intron 45.0%
GCTCATCTCAGACCATTGAT+CGG - chr3_1:83179437-83179456 None:intergenic 45.0%
!! CAAGGCTAATGCTGCTTTAC+TGG - chr3_1:83179782-83179801 None:intergenic 45.0%
! CAGTAAAGCAGCATTAGCCT+TGG + chr3_1:83179780-83179799 Msa0381180:intron 45.0%
!! AGCAGCATTAGCCTTGGATA+TGG + chr3_1:83179786-83179805 Msa0381180:intron 45.0%
TTCTTGTATGGTCACCTGCA+AGG + chr3_1:83179988-83180007 Msa0381180:CDS 45.0%
CTGACCTTGTGATAAACTGC+AGG + chr3_1:83180097-83180116 Msa0381180:intron 45.0%
GGAGCAGATGTGAAACACAT+AGG + chr3_1:83180266-83180285 Msa0381180:three_prime_UTR 45.0%
!! GTGTAGCCCATTGCTTTTGT+AGG + chr3_1:83180313-83180332 Msa0381180:three_prime_UTR 45.0%
!! TATTATACAATAATATATTA+TGG + chr3_1:83178313-83178332 Msa0381180:intron 5.0%
CTTCACTCCTGGAACTCAAG+TGG - chr3_1:83174411-83174430 None:intergenic 50.0%
CACTTGAGTTCCAGGAGTGA+AGG + chr3_1:83174409-83174428 Msa0381180:five_prime_UTR 50.0%
TTGAGTTCCAGGAGTGAAGG+AGG + chr3_1:83174412-83174431 Msa0381180:five_prime_UTR 50.0%
TCTTCTTCCTCCTTCACTCC+TGG - chr3_1:83174422-83174441 None:intergenic 50.0%
GAAGAAGACGACGACGACTT+TGG + chr3_1:83174437-83174456 Msa0381180:five_prime_UTR 50.0%
GAACTCGTTTCCCCTCACAA+AGG + chr3_1:83174671-83174690 Msa0381180:CDS 50.0%
GTGAACGTCGTAAACCGCTA+CGG - chr3_1:83174765-83174784 None:intergenic 50.0%
TAGCGGTTTACGACGTTCAC+CGG + chr3_1:83174765-83174784 Msa0381180:CDS 50.0%
TTGGGACACTAACACCACTC+AGG + chr3_1:83174952-83174971 Msa0381180:CDS 50.0%
GCTTATTGCTGCTGGAACTG+AGG + chr3_1:83175380-83175399 Msa0381180:CDS 50.0%
! AGCATTGGATGTTGGCACAG+TGG - chr3_1:83175924-83175943 None:intergenic 50.0%
TGTCAAGCTCCACCACTGAT+AGG + chr3_1:83176009-83176028 Msa0381180:intron 50.0%
GAATGGGTCTTGATTACCGG+GGG + chr3_1:83176194-83176213 Msa0381180:CDS 50.0%
AATGGGTCTTGATTACCGGG+GGG + chr3_1:83176195-83176214 Msa0381180:CDS 50.0%
!!! TTTTGGGACATAAGGCGTGC+TGG + chr3_1:83176236-83176255 Msa0381180:CDS 50.0%
CGGAACGTTTGAGTAGAGGT+GGG - chr3_1:83176307-83176326 None:intergenic 50.0%
ACGGAACGTTTGAGTAGAGG+TGG - chr3_1:83176308-83176327 None:intergenic 50.0%
AGCACGGAACGTTTGAGTAG+AGG - chr3_1:83176311-83176330 None:intergenic 50.0%
! ATGTCCACTGCCACTTCCAT+TGG - chr3_1:83176508-83176527 None:intergenic 50.0%
!! GCTCATTATGGTGCTGTGAC+AGG + chr3_1:83176612-83176631 Msa0381180:CDS 50.0%
ACAAACACCGGACATGACAC+CGG - chr3_1:83177157-83177176 None:intergenic 50.0%
! GCACTGGCATACACAAACAC+CGG - chr3_1:83177169-83177188 None:intergenic 50.0%
!! CTGAAGGCACTATGAAGCAC+TGG - chr3_1:83177185-83177204 None:intergenic 50.0%
CAGTGCTTCATAGTGCCTTC+AGG + chr3_1:83177183-83177202 Msa0381180:intron 50.0%
ATCAGGGTGAGGTAGAGAAG+TGG + chr3_1:83177548-83177567 Msa0381180:intron 50.0%
GCACTCAATGGAACTGGCTA+AGG + chr3_1:83177670-83177689 Msa0381180:intron 50.0%
! TTTTGACGGGACTGCAACAG+AGG + chr3_1:83178016-83178035 Msa0381180:intron 50.0%
TTTGACGGGACTGCAACAGA+GGG + chr3_1:83178017-83178036 Msa0381180:intron 50.0%
AACGCACGTACGATACTACG+TGG + chr3_1:83178878-83178897 Msa0381180:CDS 50.0%
CGGACCACTTATAACAGAGC+AGG - chr3_1:83178984-83179003 None:intergenic 50.0%
!! GTCTGGCTGTTTGGTTTGTC+AGG + chr3_1:83179033-83179052 Msa0381180:intron 50.0%
!! GCTGTTTGGTTTGTCAGGTC+CGG + chr3_1:83179038-83179057 Msa0381180:intron 50.0%
!! CTGTTTGGTTTGTCAGGTCC+GGG + chr3_1:83179039-83179058 Msa0381180:intron 50.0%
TTGCCACAGGAGTTGTACAC+AGG + chr3_1:83179948-83179967 Msa0381180:intron 50.0%
TCATCGGCAATTGACCTTGC+AGG - chr3_1:83180005-83180024 None:intergenic 50.0%
TCGCCCTGCAGTTTATCACA+AGG - chr3_1:83180104-83180123 None:intergenic 50.0%
TGTGATAAACTGCAGGGCGA+AGG + chr3_1:83180104-83180123 Msa0381180:intron 50.0%
CTCAGTTACTCCAGCTATCC+TGG - chr3_1:83180142-83180161 None:intergenic 50.0%
GACGACGACGACTTTGGTTG+TGG + chr3_1:83174443-83174462 Msa0381180:five_prime_UTR 55.0%
TGCGTCAGATGCATCCGTAG+CGG + chr3_1:83174748-83174767 Msa0381180:CDS 55.0%
CCATCTCCGTCGAAATCGCT+CGG - chr3_1:83174791-83174810 None:intergenic 55.0%
! TTGATTACCGGGGGGTGTGA+TGG + chr3_1:83176203-83176222 Msa0381180:CDS 55.0%
TATTGCACCATCACACCCCC+CGG - chr3_1:83176213-83176232 None:intergenic 55.0%
GTTGCCAATGGAAGTGGCAG+TGG + chr3_1:83176501-83176520 Msa0381180:CDS 55.0%
! ATTGATTCCTGACGGGGGGA+AGG + chr3_1:83177798-83177817 Msa0381180:intron 55.0%
TTGATTCCTGACGGGGGGAA+GGG + chr3_1:83177799-83177818 Msa0381180:intron 55.0%
! AAGAGGCAGCGAGCTTTGAC+TGG + chr3_1:83178136-83178155 Msa0381180:intron 55.0%
AGCGGTTGAGGGGTGGAATT+GGG - chr3_1:83178778-83178797 None:intergenic 55.0%
TAGCGGTTGAGGGGTGGAAT+TGG - chr3_1:83178779-83178798 None:intergenic 55.0%
GTTACTTAGCGGTTGAGGGG+TGG - chr3_1:83178785-83178804 None:intergenic 55.0%
GGTTGTCAGGTCTGGCTGTT+TGG + chr3_1:83179024-83179043 Msa0381180:intron 55.0%
TAGGTTGTTGTGGCGGTGGT+GGG - chr3_1:83179468-83179487 None:intergenic 55.0%
TCAGTAGGTTGTTGTGGCGG+TGG - chr3_1:83179472-83179491 None:intergenic 55.0%
CCACCTGTGTACAACTCCTG+TGG - chr3_1:83179954-83179973 None:intergenic 55.0%
CCACAGGAGTTGTACACAGG+TGG + chr3_1:83179951-83179970 Msa0381180:intron 55.0%
ACTCCAGCTATCCTGGTCGT+CGG - chr3_1:83180135-83180154 None:intergenic 55.0%
CCGAGCGATTTCGACGGAGA+TGG + chr3_1:83174788-83174807 Msa0381180:CDS 60.0%
GGCATGCACCCCCAGTTCTA+AGG - chr3_1:83175673-83175692 None:intergenic 60.0%
GGCAGTGGACATCTGCCAAC+TGG + chr3_1:83176516-83176535 Msa0381180:CDS 60.0%
GTGGACATCTGCCAACTGGC+AGG + chr3_1:83176520-83176539 Msa0381180:CDS 60.0%
AGGTTGTTGTGGCGGTGGTG+GGG - chr3_1:83179467-83179486 None:intergenic 60.0%
GTAGGTTGTTGTGGCGGTGG+TGG - chr3_1:83179469-83179488 None:intergenic 60.0%
ATCCCGACGACCAGGATAGC+TGG + chr3_1:83180129-83180148 Msa0381180:CDS 60.0%
CTCCAGCTATCCTGGTCGTC+GGG - chr3_1:83180134-83180153 None:intergenic 60.0%
CACCGGCCGAGCGATTTCGA+CGG + chr3_1:83174782-83174801 Msa0381180:CDS 65.0%
CTCCGTCGAAATCGCTCGGC+CGG - chr3_1:83174787-83174806 None:intergenic 65.0%
CTTCAACCCTTCCCCCCGTC+AGG - chr3_1:83177808-83177827 None:intergenic 65.0%
CGAAGGAGATCCCGACGACC+AGG + chr3_1:83180121-83180140 Msa0381180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83174360 83180558 83174360 ID=Msa0381180;Name=Msa0381180
chr3_1 mRNA 83174360 83180558 83174360 ID=Msa0381180-mRNA-1;Parent=Msa0381180;Name=Msa0381180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=197|1|1|1|1|1|8|398|441
chr3_1 exon 83174360 83174973 83174360 ID=Msa0381180-mRNA-1:exon:21314;Parent=Msa0381180-mRNA-1
chr3_1 exon 83175309 83175468 83175309 ID=Msa0381180-mRNA-1:exon:21315;Parent=Msa0381180-mRNA-1
chr3_1 exon 83176159 83176337 83176159 ID=Msa0381180-mRNA-1:exon:21316;Parent=Msa0381180-mRNA-1
chr3_1 exon 83176465 83176675 83176465 ID=Msa0381180-mRNA-1:exon:21317;Parent=Msa0381180-mRNA-1
chr3_1 exon 83178462 83178616 83178462 ID=Msa0381180-mRNA-1:exon:21318;Parent=Msa0381180-mRNA-1
chr3_1 exon 83178857 83178946 83178857 ID=Msa0381180-mRNA-1:exon:21319;Parent=Msa0381180-mRNA-1
chr3_1 exon 83179957 83180028 83179957 ID=Msa0381180-mRNA-1:exon:21320;Parent=Msa0381180-mRNA-1
chr3_1 exon 83180119 83180558 83180119 ID=Msa0381180-mRNA-1:exon:21321;Parent=Msa0381180-mRNA-1
chr3_1 five_prime_UTR 83174360 83174556 83174360 ID=Msa0381180-mRNA-1:five_prime_utr;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83174557 83174973 83174557 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83175309 83175468 83175309 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83176159 83176337 83176159 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83176465 83176675 83176465 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83178462 83178616 83178462 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83178857 83178946 83178857 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83179957 83180028 83179957 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 CDS 83180119 83180160 83180119 ID=Msa0381180-mRNA-1:cds;Parent=Msa0381180-mRNA-1
chr3_1 three_prime_UTR 83180161 83180558 83180161 ID=Msa0381180-mRNA-1:three_prime_utr;Parent=Msa0381180-mRNA-1
Gene Sequence

>Msa0381180

ATGGATACGTGGAAGAACATCAAAGACAGAGAATCCGGAAAATTGCGTCCAAATTCCTTCGCTAATCGCATAAAATCAAATCGAATTTCACAACTCGAGTTATCAAATCACAAAGAACTCGTTTCCCCTCACAAAGGCGCAATTAATTCCCTTCAAATTGATTTAACAGAAGGAAGATATCTGTTATCTGCTGCGTCAGATGCATCCGTAGCGGTTTACGACGTTCACCGGCCGAGCGATTTCGACGGAGATGGTTTGATAACGAAACACAATTGTTTATTTGTTGTTGATAAGCAACACCAATTAGCTCATAAATATGCTGTATCTTCAGCTATTTGGTATCCCATTGATACTGGTTTATTCATCACTGGTTCTTATGATCATCATGTTAATGTTTGGGACACTAACACCACTCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTGTATAAGACTGCAATGTCTACATTGTCAACATCTCATACGCTTATTGCTGCTGGAACTGAGGATGTACAAGTTCGTCTTTGTGATATTGCTTCTGGTGCATTTGCTCATACTTTGTCTGGTCATCGTGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACCGGGGGGTGTGATGGTGCAATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCAGACGCAGCTTGGACGACGCCCACCTCTACTCAAACGTTCCGTGCTAACTAAGGAATCAAATACAAAAATGCGTCCTGGACAGAAGAAAGTTGCCAATGGAAGTGGCAGTGGACATCTGCCAACTGGCAGGCTATCATCTAAGGGTCCAATGAAGCAGAAATTACATCCAGGAATGATTTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGATTGAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGGTCTGATTCAAGATTGAGATTGTGGGATGTTGAGTCAGGCTGCGACACACTTGTGAACTTCGAAACAGTCCGCTTGCAAACAAGCAAACCTATTCAATTAGCTACAACTCAAGACTCGACCGTCGTTTTTGTTCCATGCATGAGGGTTGTGAAAGCATTTGATATGTGGTCTGGGAACGCACGTACGATACTACGTGGACACTATGAATCTATAAACTCCTGCTGGTTTAATCAACAAGATCAGGAGTTGTACACAGGTGGAAACGATAGACAAATTCTTGTATGGTCACCTGCAAGGTCAATTGCCGATGAAATGGGCGAAGGAGATCCCGACGACCAGGATAGCTGGAGTAACTGA
Protein sequence

>Msa0381180

MDTWKNIKDRESGKLRPNSFANRIKSNRISQLELSNHKELVSPHKGAINSLQIDLTEGRYLLSAASDASVAVYDVHRPSDFDGDGLITKHNCLFVVDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHHVNVWDTNTTQVVVNFKMPGKVYKTAMSTLSTSHTLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSQTQLGRRPPLLKRSVLTKESNTKMRPGQKKVANGSGSGHLPTGRLSSKGPMKQKLHPGMISTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQTSKPIQLATTQDSTVVFVPCMRVVKAFDMWSGNARTILRGHYESINSCWFNQQDQELYTGGNDRQILVWSPARSIADEMGEGDPDDQDSWSN*