Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789660 | A0A2K3LW02 | 52.206 | 136 | 51 | 3 | 28 | 150 | 38 | 172 | 1.31e-30 | 122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0789660 | 0.811806 | 5.822820e-51 | -8.615850e-47 |
| Msa0029910 | Msa0789660 | 0.814489 | 1.500848e-51 | -8.615850e-47 |
| Msa0110970 | Msa0789660 | 0.823066 | 1.691581e-53 | -8.615850e-47 |
| Msa0116770 | Msa0789660 | 0.800478 | 1.414718e-48 | -8.615850e-47 |
| Msa0657970 | Msa0789660 | 0.806172 | 9.357866e-50 | -8.615850e-47 |
| Msa0684500 | Msa0789660 | 0.807761 | 4.316973e-50 | -8.615850e-47 |
| Msa0689010 | Msa0789660 | 0.800654 | 1.302065e-48 | -8.615850e-47 |
| Msa0693380 | Msa0789660 | 0.805279 | 1.441244e-49 | -8.615850e-47 |
| Msa0715470 | Msa0789660 | 0.810196 | 1.300093e-50 | -8.615850e-47 |
| Msa0727710 | Msa0789660 | 0.800838 | 1.194440e-48 | -8.615850e-47 |
| Msa0789660 | Msa0824680 | 0.811904 | 5.545114e-51 | -8.615850e-47 |
| Msa0789660 | Msa0840750 | 0.812597 | 3.913921e-51 | -8.615850e-47 |
| Msa0789660 | Msa0850960 | 0.812023 | 5.222420e-51 | -8.615850e-47 |
| Msa0789660 | Msa0867890 | 0.804589 | 2.009149e-49 | -8.615850e-47 |
| Msa0789660 | Msa0880140 | 0.810253 | 1.263322e-50 | -8.615850e-47 |
| Msa0789660 | Msa0909120 | 0.806603 | 7.593451e-50 | -8.615850e-47 |
| Msa0789660 | Msa0936270 | 0.800750 | 1.244982e-48 | -8.615850e-47 |
| Msa0789660 | Msa0944030 | 0.801624 | 8.248951e-49 | -8.615850e-47 |
| Msa0789660 | Msa1027290 | 0.800284 | 1.548862e-48 | -8.615850e-47 |
| Msa0789660 | Msa1082500 | 0.849426 | 3.259284e-60 | -8.615850e-47 |
| Msa0789660 | Msa1199220 | 0.809273 | 2.052728e-50 | -8.615850e-47 |
| Msa0789660 | Msa1228210 | 0.804772 | 1.840035e-49 | -8.615850e-47 |
| Msa0789660 | Msa1271300 | 0.809823 | 1.563733e-50 | -8.615850e-47 |
| Msa0789660 | Msa1278840 | 0.806773 | 6.989672e-50 | -8.615850e-47 |
| Msa0789660 | Msa1283860 | 0.810086 | 1.372876e-50 | -8.615850e-47 |
| Msa0789660 | Msa1305870 | 0.971379 | 4.523813e-133 | -8.615850e-47 |
| Msa0789660 | Msa1308380 | 0.821583 | 3.738075e-53 | -8.615850e-47 |
| Msa0789660 | Msa1411020 | 0.801105 | 1.053336e-48 | -8.615850e-47 |
| Msa0789660 | Msa1439320 | 0.800274 | 1.556041e-48 | -8.615850e-47 |
| Msa0124340 | Msa0789660 | 0.820370 | 7.107992e-53 | -8.615850e-47 |
| Msa0157290 | Msa0789660 | 0.811374 | 7.228130e-51 | -8.615850e-47 |
| Msa0169920 | Msa0789660 | 0.810986 | 8.774070e-51 | -8.615850e-47 |
| Msa0212990 | Msa0789660 | 0.803883 | 2.818420e-49 | -8.615850e-47 |
| Msa0461720 | Msa0789660 | 0.802165 | 6.384318e-49 | -8.615850e-47 |
| Msa0238890 | Msa0789660 | 0.804135 | 2.497378e-49 | -8.615850e-47 |
| Msa0243710 | Msa0789660 | 0.812534 | 4.040307e-51 | -8.615850e-47 |
| Msa0287650 | Msa0789660 | 0.808797 | 2.595525e-50 | -8.615850e-47 |
| Msa0323610 | Msa0789660 | 0.825361 | 4.887660e-54 | -8.615850e-47 |
| Msa0330340 | Msa0789660 | 0.801415 | 9.100889e-49 | -8.615850e-47 |
| Msa0334040 | Msa0789660 | 0.808723 | 2.692608e-50 | -8.615850e-47 |
| Msa0484780 | Msa0789660 | 0.836431 | 9.394385e-57 | -8.615850e-47 |
| Msa0562440 | Msa0789660 | 0.805805 | 1.117700e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789660 | MtrunA17_Chr7g0246491 | 39.597 | 149 | 74 | 3 | 15 | 150 | 23 | 168 | 3.98e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789660 | AT4G00231.1 | 31.690 | 142 | 83 | 4 | 21 | 150 | 21 | 160 | 6.50e-13 | 67.8 |
Find 41 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACTTCCAAGTCTGATTC+TGG | 0.226508 | 5_3:+41335 | Msa0789660:CDS |
| GATGTTGCATTGTTTGTTTA+TGG | 0.273918 | 5_3:+42026 | Msa0789660:CDS |
| GTCATGGAAACAAAAGGTTT+TGG | 0.287707 | 5_3:+42768 | Msa0789660:CDS |
| GAGAGGAAAGTCTGGTCTTC+CGG | 0.301455 | 5_3:+42088 | Msa0789660:CDS |
| AATTTATTTCTTGAGCTTGA+TGG | 0.304112 | 5_3:+41500 | Msa0789660:CDS |
| AGGTTGGTTCTGATCACATT+AGG | 0.310156 | 5_3:+41561 | Msa0789660:CDS |
| CAAGCTCAAGAAATAAATTC+TGG | 0.355436 | 5_3:-41496 | None:intergenic |
| GGTTGGTTCTGATCACATTA+GGG | 0.398790 | 5_3:+41562 | Msa0789660:CDS |
| ATTTACAAGCATTGCGTGCC+TGG | 0.405672 | 5_3:-42608 | None:intergenic |
| AGCATTGCGTGCCTGGTTCT+CGG | 0.406257 | 5_3:-42601 | None:intergenic |
| AGACCAAGTACAGAAATTTC+AGG | 0.407898 | 5_3:-42562 | None:intergenic |
| GTGCCTGAAATTTCTGTACT+TGG | 0.416850 | 5_3:+42559 | Msa0789660:CDS |
| AGAGGAAAGTCTGGTCTTCC+GGG | 0.430672 | 5_3:+42089 | Msa0789660:CDS |
| GATTCTGGATGTTCTAACCT+TGG | 0.434064 | 5_3:+41350 | Msa0789660:CDS |
| CTGATCACATTAGGGTTCAC+TGG | 0.435286 | 5_3:+41570 | Msa0789660:CDS |
| GGAATATTCAATAAATCCAT+TGG | 0.457488 | 5_3:+42047 | Msa0789660:CDS |
| CTCCTCAGAAACTTGTGTGC+TGG | 0.465813 | 5_3:+41461 | Msa0789660:CDS |
| CATGCAGTGAGAGGAAAGTC+TGG | 0.488208 | 5_3:+42080 | Msa0789660:CDS |
| CGGAAGTTGATCCGAGAACC+AGG | 0.501779 | 5_3:+42590 | Msa0789660:CDS |
| TGATTGTCTCGACAGAATCA+AGG | 0.502244 | 5_3:+42746 | Msa0789660:intron |
| AGTGTCGGTGCTACAAGCTC+AGG | 0.512689 | 5_3:+41291 | Msa0789660:CDS |
| ATCAAGGTCATGGAAACAAA+AGG | 0.517751 | 5_3:+42762 | Msa0789660:CDS |
| TGTTGCTGAGTTAAAGCTGC+AGG | 0.521628 | 5_3:+42525 | Msa0789660:CDS |
| AATATAATGATCTAAAGTAA+AGG | 0.534822 | 5_3:-41420 | None:intergenic |
| TCTCGACAGAATCAAGGTCA+TGG | 0.547258 | 5_3:+42752 | Msa0789660:intron |
| TCTTGGAAGACTTGGTACAA+AGG | 0.566523 | 5_3:+41643 | Msa0789660:CDS |
| TAGGGTTCACTGGGAAGCAG+AGG | 0.574106 | 5_3:+41580 | Msa0789660:CDS |
| CTCCAGCACACAAGTTTCTG+AGG | 0.575676 | 5_3:-41463 | None:intergenic |
| GTAATCACATGTGTTGGTGT+TGG | 0.576023 | 5_3:+41234 | None:intergenic |
| TGCATGCTCAAGAACTCCAA+TGG | 0.581796 | 5_3:-42063 | None:intergenic |
| TTGAAAGTAATCACATGTGT+TGG | 0.583921 | 5_3:+41228 | None:intergenic |
| TGATCACATTAGGGTTCACT+GGG | 0.589870 | 5_3:+41571 | Msa0789660:CDS |
| TGAGAAGTGTTATTTCCACC+TGG | 0.591111 | 5_3:+41609 | Msa0789660:CDS |
| GTTCTTGAGCATGCAGTGAG+AGG | 0.593467 | 5_3:+42071 | Msa0789660:CDS |
| TAAATTACCACCATACACAA+TGG | 0.620589 | 5_3:-41677 | None:intergenic |
| AGGGTTCACTGGGAAGCAGA+GGG | 0.629310 | 5_3:+41581 | Msa0789660:CDS |
| AGAACATCCAGAATCAGACT+TGG | 0.631308 | 5_3:-41342 | None:intergenic |
| TTCTGTACTTGGTCTTCGAG+CGG | 0.631603 | 5_3:+42570 | Msa0789660:CDS |
| AACAAGACTTCAATAAGTGT+CGG | 0.647526 | 5_3:+41276 | Msa0789660:CDS |
| ACATGTGTTGGTGTTGGACA+CGG | 0.650053 | 5_3:+41240 | None:intergenic |
| TTTGCGAGTGAAGTATACTG+AGG | 0.729154 | 5_3:-41397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATGATCTAAAGTAA+AGG | - | chr5_3:41423-41442 | None:intergenic | 15.0% |
| !!! | AATATAATGATCTAAAGTAA+AGG | - | chr5_3:41423-41442 | None:intergenic | 15.0% |
| !!! | ATCAGTTTTCATCTAAATTA+CGG | + | chr5_3:41922-41941 | Msa0789660:intron | 20.0% |
| !! | GTTTCTTCTTAAAATCATAT+TGG | + | chr5_3:41962-41981 | Msa0789660:intron | 20.0% |
| !!! | ATCATATTGGAAATTTTGAA+CGG | + | chr5_3:41975-41994 | Msa0789660:intron | 20.0% |
| !!! | ATCAGTTTTCATCTAAATTA+CGG | + | chr5_3:41922-41941 | Msa0789660:intron | 20.0% |
| !! | GTTTCTTCTTAAAATCATAT+TGG | + | chr5_3:41962-41981 | Msa0789660:intron | 20.0% |
| !!! | ATCATATTGGAAATTTTGAA+CGG | + | chr5_3:41975-41994 | Msa0789660:intron | 20.0% |
| !! | AATTTATTTCTTGAGCTTGA+TGG | + | chr5_3:41500-41519 | Msa0789660:CDS | 25.0% |
| !! | TCATATTGGAAATTTTGAAC+GGG | + | chr5_3:41976-41995 | Msa0789660:intron | 25.0% |
| ! | GGAATATTCAATAAATCCAT+TGG | + | chr5_3:42047-42066 | Msa0789660:CDS | 25.0% |
| ! | ATTCATTTCCTGATTATTGT+CGG | - | chr5_3:42287-42306 | None:intergenic | 25.0% |
| ! | AAACAATCTGATAATCAAGA+CGG | + | chr5_3:42308-42327 | Msa0789660:intron | 25.0% |
| ! | AAGTTATAGGATTATTTCGT+GGG | - | chr5_3:42636-42655 | None:intergenic | 25.0% |
| ! | ATACATTACAACCAAGTTAT+AGG | - | chr5_3:42649-42668 | None:intergenic | 25.0% |
| ! | TCTAGTCTAGTAAAAGATAA+AGG | + | chr5_3:42709-42728 | Msa0789660:intron | 25.0% |
| !! | AATTTATTTCTTGAGCTTGA+TGG | + | chr5_3:41500-41519 | Msa0789660:CDS | 25.0% |
| !! | TCATATTGGAAATTTTGAAC+GGG | + | chr5_3:41976-41995 | Msa0789660:intron | 25.0% |
| ! | GGAATATTCAATAAATCCAT+TGG | + | chr5_3:42047-42066 | Msa0789660:CDS | 25.0% |
| ! | ATTCATTTCCTGATTATTGT+CGG | - | chr5_3:42287-42306 | None:intergenic | 25.0% |
| ! | AAACAATCTGATAATCAAGA+CGG | + | chr5_3:42308-42327 | Msa0789660:intron | 25.0% |
| ! | AAGTTATAGGATTATTTCGT+GGG | - | chr5_3:42636-42655 | None:intergenic | 25.0% |
| ! | ATACATTACAACCAAGTTAT+AGG | - | chr5_3:42649-42668 | None:intergenic | 25.0% |
| ! | TCTAGTCTAGTAAAAGATAA+AGG | + | chr5_3:42709-42728 | Msa0789660:intron | 25.0% |
| AACAAGACTTCAATAAGTGT+CGG | + | chr5_3:41276-41295 | Msa0789660:CDS | 30.0% | |
| !!! | TGAAAACTCTTTTGAAACCA+AGG | - | chr5_3:41370-41389 | None:intergenic | 30.0% |
| CAAGCTCAAGAAATAAATTC+TGG | - | chr5_3:41499-41518 | None:intergenic | 30.0% | |
| !! | TGTTTTTGATCCATTGTGTA+TGG | + | chr5_3:41667-41686 | Msa0789660:CDS | 30.0% |
| TAAATTACCACCATACACAA+TGG | - | chr5_3:41680-41699 | None:intergenic | 30.0% | |
| AAATCTCACCAAATCATTCA+GGG | - | chr5_3:41721-41740 | None:intergenic | 30.0% | |
| TAAATCTCACCAAATCATTC+AGG | - | chr5_3:41722-41741 | None:intergenic | 30.0% | |
| ! | CGGTATTGTTTTCTAGATTA+CGG | + | chr5_3:41856-41875 | Msa0789660:intron | 30.0% |
| ! | GTTTTCTAGATTACGGTTTA+TGG | + | chr5_3:41863-41882 | Msa0789660:intron | 30.0% |
| GATGTTGCATTGTTTGTTTA+TGG | + | chr5_3:42026-42045 | Msa0789660:CDS | 30.0% | |
| CTACTCGCTTATTATATTGA+AGG | + | chr5_3:42144-42163 | Msa0789660:intron | 30.0% | |
| ATAAATTCCTTGTAAGGTCA+TGG | - | chr5_3:42353-42372 | None:intergenic | 30.0% | |
| TCTCTCATAAATTCCTTGTA+AGG | - | chr5_3:42359-42378 | None:intergenic | 30.0% | |
| CAAGTTATAGGATTATTTCG+TGG | - | chr5_3:42637-42656 | None:intergenic | 30.0% | |
| CACGAAATAATCCTATAACT+TGG | + | chr5_3:42635-42654 | Msa0789660:intron | 30.0% | |
| ! | TCATGGAAACAAAAGGTTTT+GGG | + | chr5_3:42769-42788 | Msa0789660:CDS | 30.0% |
| AACAAGACTTCAATAAGTGT+CGG | + | chr5_3:41276-41295 | Msa0789660:CDS | 30.0% | |
| !!! | TGAAAACTCTTTTGAAACCA+AGG | - | chr5_3:41370-41389 | None:intergenic | 30.0% |
| CAAGCTCAAGAAATAAATTC+TGG | - | chr5_3:41499-41518 | None:intergenic | 30.0% | |
| !! | TGTTTTTGATCCATTGTGTA+TGG | + | chr5_3:41667-41686 | Msa0789660:CDS | 30.0% |
| TAAATTACCACCATACACAA+TGG | - | chr5_3:41680-41699 | None:intergenic | 30.0% | |
| AAATCTCACCAAATCATTCA+GGG | - | chr5_3:41721-41740 | None:intergenic | 30.0% | |
| TAAATCTCACCAAATCATTC+AGG | - | chr5_3:41722-41741 | None:intergenic | 30.0% | |
| ! | CGGTATTGTTTTCTAGATTA+CGG | + | chr5_3:41856-41875 | Msa0789660:intron | 30.0% |
| ! | GTTTTCTAGATTACGGTTTA+TGG | + | chr5_3:41863-41882 | Msa0789660:intron | 30.0% |
| GATGTTGCATTGTTTGTTTA+TGG | + | chr5_3:42026-42045 | Msa0789660:CDS | 30.0% | |
| CTACTCGCTTATTATATTGA+AGG | + | chr5_3:42144-42163 | Msa0789660:intron | 30.0% | |
| ATAAATTCCTTGTAAGGTCA+TGG | - | chr5_3:42353-42372 | None:intergenic | 30.0% | |
| TCTCTCATAAATTCCTTGTA+AGG | - | chr5_3:42359-42378 | None:intergenic | 30.0% | |
| CAAGTTATAGGATTATTTCG+TGG | - | chr5_3:42637-42656 | None:intergenic | 30.0% | |
| CACGAAATAATCCTATAACT+TGG | + | chr5_3:42635-42654 | Msa0789660:intron | 30.0% | |
| ! | TCATGGAAACAAAAGGTTTT+GGG | + | chr5_3:42769-42788 | Msa0789660:CDS | 30.0% |
| !! | GTTAGAGTATTTTGAGTCAG+AGG | + | chr5_3:41541-41560 | Msa0789660:CDS | 35.0% |
| AAGAGACAAAAAAAACCAGG+TGG | - | chr5_3:41627-41646 | None:intergenic | 35.0% | |
| !!! | ACCTGGTTTTTTTTGTCTCT+TGG | + | chr5_3:41626-41645 | Msa0789660:CDS | 35.0% |
| TCCAAGAGACAAAAAAAACC+AGG | - | chr5_3:41630-41649 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTCTTGGAAGACT+TGG | + | chr5_3:41635-41654 | Msa0789660:CDS | 35.0% |
| ! | TTTTGATCCATTGTGTATGG+TGG | + | chr5_3:41670-41689 | Msa0789660:CDS | 35.0% |
| GTAATTTACACATGCTGTGA+TGG | + | chr5_3:41692-41711 | Msa0789660:intron | 35.0% | |
| GGTGAGATTTATAGTCTCAA+TGG | + | chr5_3:41731-41750 | Msa0789660:intron | 35.0% | |
| !! | TGAGAACTTCTTGCTAGTTT+TGG | + | chr5_3:41777-41796 | Msa0789660:intron | 35.0% |
| !!! | TTGCTAGTTTTGGTGAGTAT+TGG | + | chr5_3:41787-41806 | Msa0789660:intron | 35.0% |
| ! | CCTTGAAGAATCGTGATTTT+CGG | + | chr5_3:41836-41855 | Msa0789660:intron | 35.0% |
| ! | GAAATTTTGAACGGGTGAAT+CGG | + | chr5_3:41984-42003 | Msa0789660:intron | 35.0% |
| TGATTATTGTCGGAGGTTTA+AGG | - | chr5_3:42277-42296 | None:intergenic | 35.0% | |
| TTAAACCTCCGACAATAATC+AGG | + | chr5_3:42276-42295 | Msa0789660:intron | 35.0% | |
| AGAGACATAGTTGCACTTAT+TGG | + | chr5_3:42374-42393 | Msa0789660:intron | 35.0% | |
| TTGGCAGTTGTGTTTATAGA+AGG | + | chr5_3:42393-42412 | Msa0789660:intron | 35.0% | |
| AGACCAAGTACAGAAATTTC+AGG | - | chr5_3:42565-42584 | None:intergenic | 35.0% | |
| ATCAAGGTCATGGAAACAAA+AGG | + | chr5_3:42762-42781 | Msa0789660:CDS | 35.0% | |
| ! | GTCATGGAAACAAAAGGTTT+TGG | + | chr5_3:42768-42787 | Msa0789660:CDS | 35.0% |
| ! | CATGGAAACAAAAGGTTTTG+GGG | + | chr5_3:42770-42789 | Msa0789660:CDS | 35.0% |
| !! | GTTAGAGTATTTTGAGTCAG+AGG | + | chr5_3:41541-41560 | Msa0789660:CDS | 35.0% |
| AAGAGACAAAAAAAACCAGG+TGG | - | chr5_3:41627-41646 | None:intergenic | 35.0% | |
| !!! | ACCTGGTTTTTTTTGTCTCT+TGG | + | chr5_3:41626-41645 | Msa0789660:CDS | 35.0% |
| TCCAAGAGACAAAAAAAACC+AGG | - | chr5_3:41630-41649 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTCTTGGAAGACT+TGG | + | chr5_3:41635-41654 | Msa0789660:CDS | 35.0% |
| ! | TTTTGATCCATTGTGTATGG+TGG | + | chr5_3:41670-41689 | Msa0789660:CDS | 35.0% |
| GTAATTTACACATGCTGTGA+TGG | + | chr5_3:41692-41711 | Msa0789660:intron | 35.0% | |
| GGTGAGATTTATAGTCTCAA+TGG | + | chr5_3:41731-41750 | Msa0789660:intron | 35.0% | |
| !! | TGAGAACTTCTTGCTAGTTT+TGG | + | chr5_3:41777-41796 | Msa0789660:intron | 35.0% |
| !!! | TTGCTAGTTTTGGTGAGTAT+TGG | + | chr5_3:41787-41806 | Msa0789660:intron | 35.0% |
| ! | CCTTGAAGAATCGTGATTTT+CGG | + | chr5_3:41836-41855 | Msa0789660:intron | 35.0% |
| ! | GAAATTTTGAACGGGTGAAT+CGG | + | chr5_3:41984-42003 | Msa0789660:intron | 35.0% |
| TGATTATTGTCGGAGGTTTA+AGG | - | chr5_3:42277-42296 | None:intergenic | 35.0% | |
| TTAAACCTCCGACAATAATC+AGG | + | chr5_3:42276-42295 | Msa0789660:intron | 35.0% | |
| AGAGACATAGTTGCACTTAT+TGG | + | chr5_3:42374-42393 | Msa0789660:intron | 35.0% | |
| TTGGCAGTTGTGTTTATAGA+AGG | + | chr5_3:42393-42412 | Msa0789660:intron | 35.0% | |
| AGACCAAGTACAGAAATTTC+AGG | - | chr5_3:42565-42584 | None:intergenic | 35.0% | |
| ATCAAGGTCATGGAAACAAA+AGG | + | chr5_3:42762-42781 | Msa0789660:CDS | 35.0% | |
| ! | GTCATGGAAACAAAAGGTTT+TGG | + | chr5_3:42768-42787 | Msa0789660:CDS | 35.0% |
| ! | CATGGAAACAAAAGGTTTTG+GGG | + | chr5_3:42770-42789 | Msa0789660:CDS | 35.0% |
| AGAACATCCAGAATCAGACT+TGG | - | chr5_3:41345-41364 | None:intergenic | 40.0% | |
| GATTCTGGATGTTCTAACCT+TGG | + | chr5_3:41350-41369 | Msa0789660:CDS | 40.0% | |
| TTTGCGAGTGAAGTATACTG+AGG | - | chr5_3:41400-41419 | None:intergenic | 40.0% | |
| !! | GAGTATTTTGAGTCAGAGGT+TGG | + | chr5_3:41545-41564 | Msa0789660:CDS | 40.0% |
| !! | AGGTTGGTTCTGATCACATT+AGG | + | chr5_3:41561-41580 | Msa0789660:CDS | 40.0% |
| !! | GGTTGGTTCTGATCACATTA+GGG | + | chr5_3:41562-41581 | Msa0789660:CDS | 40.0% |
| TGATCACATTAGGGTTCACT+GGG | + | chr5_3:41571-41590 | Msa0789660:CDS | 40.0% | |
| !! | TGAGAAGTGTTATTTCCACC+TGG | + | chr5_3:41609-41628 | Msa0789660:CDS | 40.0% |
| ! | TCTTGGAAGACTTGGTACAA+AGG | + | chr5_3:41643-41662 | Msa0789660:CDS | 40.0% |
| GATGGAAACCCTGAATGATT+TGG | + | chr5_3:41710-41729 | Msa0789660:intron | 40.0% | |
| !! | CTCACTATTTCTACCACTAC+AGG | - | chr5_3:41761-41780 | None:intergenic | 40.0% |
| CCGAAAATCACGATTCTTCA+AGG | - | chr5_3:41839-41858 | None:intergenic | 40.0% | |
| CGGTTTATGGATATTCTCGA+TGG | + | chr5_3:41876-41895 | Msa0789660:intron | 40.0% | |
| GTGAATCTACTGCAATGCAA+TGG | + | chr5_3:42111-42130 | Msa0789660:intron | 40.0% | |
| TGCAATGCAATGGATGTTCT+TGG | + | chr5_3:42121-42140 | Msa0789660:intron | 40.0% | |
| CATTTCCTGATTATTGTCGG+AGG | - | chr5_3:42284-42303 | None:intergenic | 40.0% | |
| ACGCACAAGATGAAATCATG+AGG | + | chr5_3:42420-42439 | Msa0789660:intron | 40.0% | |
| CACAAGATGAAATCATGAGG+AGG | + | chr5_3:42423-42442 | Msa0789660:intron | 40.0% | |
| GATGAAATCATGAGGAGGAA+TGG | + | chr5_3:42428-42447 | Msa0789660:intron | 40.0% | |
| GTGCCTGAAATTTCTGTACT+TGG | + | chr5_3:42559-42578 | Msa0789660:CDS | 40.0% | |
| CTAGACTAGAGACATTGTAC+TGG | - | chr5_3:42699-42718 | None:intergenic | 40.0% | |
| TGATTGTCTCGACAGAATCA+AGG | + | chr5_3:42746-42765 | Msa0789660:intron | 40.0% | |
| !!! | ACAAAAGGTTTTGGGGATTG+AGG | + | chr5_3:42777-42796 | Msa0789660:CDS | 40.0% |
| AGAACATCCAGAATCAGACT+TGG | - | chr5_3:41345-41364 | None:intergenic | 40.0% | |
| GATTCTGGATGTTCTAACCT+TGG | + | chr5_3:41350-41369 | Msa0789660:CDS | 40.0% | |
| TTTGCGAGTGAAGTATACTG+AGG | - | chr5_3:41400-41419 | None:intergenic | 40.0% | |
| !! | GAGTATTTTGAGTCAGAGGT+TGG | + | chr5_3:41545-41564 | Msa0789660:CDS | 40.0% |
| !! | AGGTTGGTTCTGATCACATT+AGG | + | chr5_3:41561-41580 | Msa0789660:CDS | 40.0% |
| !! | GGTTGGTTCTGATCACATTA+GGG | + | chr5_3:41562-41581 | Msa0789660:CDS | 40.0% |
| TGATCACATTAGGGTTCACT+GGG | + | chr5_3:41571-41590 | Msa0789660:CDS | 40.0% | |
| !! | TGAGAAGTGTTATTTCCACC+TGG | + | chr5_3:41609-41628 | Msa0789660:CDS | 40.0% |
| ! | TCTTGGAAGACTTGGTACAA+AGG | + | chr5_3:41643-41662 | Msa0789660:CDS | 40.0% |
| GATGGAAACCCTGAATGATT+TGG | + | chr5_3:41710-41729 | Msa0789660:intron | 40.0% | |
| !! | CTCACTATTTCTACCACTAC+AGG | - | chr5_3:41761-41780 | None:intergenic | 40.0% |
| CCGAAAATCACGATTCTTCA+AGG | - | chr5_3:41839-41858 | None:intergenic | 40.0% | |
| CGGTTTATGGATATTCTCGA+TGG | + | chr5_3:41876-41895 | Msa0789660:intron | 40.0% | |
| GTGAATCTACTGCAATGCAA+TGG | + | chr5_3:42111-42130 | Msa0789660:intron | 40.0% | |
| TGCAATGCAATGGATGTTCT+TGG | + | chr5_3:42121-42140 | Msa0789660:intron | 40.0% | |
| CATTTCCTGATTATTGTCGG+AGG | - | chr5_3:42284-42303 | None:intergenic | 40.0% | |
| ACGCACAAGATGAAATCATG+AGG | + | chr5_3:42420-42439 | Msa0789660:intron | 40.0% | |
| CACAAGATGAAATCATGAGG+AGG | + | chr5_3:42423-42442 | Msa0789660:intron | 40.0% | |
| GATGAAATCATGAGGAGGAA+TGG | + | chr5_3:42428-42447 | Msa0789660:intron | 40.0% | |
| GTGCCTGAAATTTCTGTACT+TGG | + | chr5_3:42559-42578 | Msa0789660:CDS | 40.0% | |
| CTAGACTAGAGACATTGTAC+TGG | - | chr5_3:42699-42718 | None:intergenic | 40.0% | |
| TGATTGTCTCGACAGAATCA+AGG | + | chr5_3:42746-42765 | Msa0789660:intron | 40.0% | |
| !!! | ACAAAAGGTTTTGGGGATTG+AGG | + | chr5_3:42777-42796 | Msa0789660:CDS | 40.0% |
| CTCACTTCCAAGTCTGATTC+TGG | + | chr5_3:41335-41354 | Msa0789660:CDS | 45.0% | |
| CTGATCACATTAGGGTTCAC+TGG | + | chr5_3:41570-41589 | Msa0789660:CDS | 45.0% | |
| ! | TCTCAATGGTTTGCCTGTAG+TGG | + | chr5_3:41745-41764 | Msa0789660:intron | 45.0% |
| ! | ATTTTGAACGGGTGAATCGG+AGG | + | chr5_3:41987-42006 | Msa0789660:intron | 45.0% |
| TGCATGCTCAAGAACTCCAA+TGG | - | chr5_3:42066-42085 | None:intergenic | 45.0% | |
| TGCATTGCAGTAGATTCACC+CGG | - | chr5_3:42110-42129 | None:intergenic | 45.0% | |
| ! | TGTGCTCATGATAGTGTGAG+AGG | + | chr5_3:42172-42191 | Msa0789660:intron | 45.0% |
| !!! | GCTGCTTTTGATTCTGCTTG+TGG | + | chr5_3:42250-42269 | Msa0789660:intron | 45.0% |
| CTTGTAAGGTCATGGTTTCG+AGG | - | chr5_3:42345-42364 | None:intergenic | 45.0% | |
| CTCGAAACCATGACCTTACA+AGG | + | chr5_3:42343-42362 | Msa0789660:intron | 45.0% | |
| TGTTGCTGAGTTAAAGCTGC+AGG | + | chr5_3:42525-42544 | Msa0789660:CDS | 45.0% | |
| ! | TTCTGTACTTGGTCTTCGAG+CGG | + | chr5_3:42570-42589 | Msa0789660:CDS | 45.0% |
| ! | ATTTACAAGCATTGCGTGCC+TGG | - | chr5_3:42611-42630 | None:intergenic | 45.0% |
| TCTCGACAGAATCAAGGTCA+TGG | + | chr5_3:42752-42771 | Msa0789660:intron | 45.0% | |
| CTCACTTCCAAGTCTGATTC+TGG | + | chr5_3:41335-41354 | Msa0789660:CDS | 45.0% | |
| CTGATCACATTAGGGTTCAC+TGG | + | chr5_3:41570-41589 | Msa0789660:CDS | 45.0% | |
| ! | TCTCAATGGTTTGCCTGTAG+TGG | + | chr5_3:41745-41764 | Msa0789660:intron | 45.0% |
| ! | ATTTTGAACGGGTGAATCGG+AGG | + | chr5_3:41987-42006 | Msa0789660:intron | 45.0% |
| TGCATGCTCAAGAACTCCAA+TGG | - | chr5_3:42066-42085 | None:intergenic | 45.0% | |
| TGCATTGCAGTAGATTCACC+CGG | - | chr5_3:42110-42129 | None:intergenic | 45.0% | |
| ! | TGTGCTCATGATAGTGTGAG+AGG | + | chr5_3:42172-42191 | Msa0789660:intron | 45.0% |
| !!! | GCTGCTTTTGATTCTGCTTG+TGG | + | chr5_3:42250-42269 | Msa0789660:intron | 45.0% |
| CTTGTAAGGTCATGGTTTCG+AGG | - | chr5_3:42345-42364 | None:intergenic | 45.0% | |
| CTCGAAACCATGACCTTACA+AGG | + | chr5_3:42343-42362 | Msa0789660:intron | 45.0% | |
| TGTTGCTGAGTTAAAGCTGC+AGG | + | chr5_3:42525-42544 | Msa0789660:CDS | 45.0% | |
| ! | TTCTGTACTTGGTCTTCGAG+CGG | + | chr5_3:42570-42589 | Msa0789660:CDS | 45.0% |
| ! | ATTTACAAGCATTGCGTGCC+TGG | - | chr5_3:42611-42630 | None:intergenic | 45.0% |
| TCTCGACAGAATCAAGGTCA+TGG | + | chr5_3:42752-42771 | Msa0789660:intron | 45.0% | |
| CTCCTCAGAAACTTGTGTGC+TGG | + | chr5_3:41461-41480 | Msa0789660:CDS | 50.0% | |
| CTCCAGCACACAAGTTTCTG+AGG | - | chr5_3:41466-41485 | None:intergenic | 50.0% | |
| GTTCTTGAGCATGCAGTGAG+AGG | + | chr5_3:42071-42090 | Msa0789660:CDS | 50.0% | |
| CATGCAGTGAGAGGAAAGTC+TGG | + | chr5_3:42080-42099 | Msa0789660:CDS | 50.0% | |
| ! | GAGAGGAAAGTCTGGTCTTC+CGG | + | chr5_3:42088-42107 | Msa0789660:CDS | 50.0% |
| ! | AGAGGAAAGTCTGGTCTTCC+GGG | + | chr5_3:42089-42108 | Msa0789660:CDS | 50.0% |
| TAGTGTGAGAGGCAACACAG+AGG | + | chr5_3:42183-42202 | Msa0789660:intron | 50.0% | |
| CTCCTCAGAAACTTGTGTGC+TGG | + | chr5_3:41461-41480 | Msa0789660:CDS | 50.0% | |
| CTCCAGCACACAAGTTTCTG+AGG | - | chr5_3:41466-41485 | None:intergenic | 50.0% | |
| GTTCTTGAGCATGCAGTGAG+AGG | + | chr5_3:42071-42090 | Msa0789660:CDS | 50.0% | |
| CATGCAGTGAGAGGAAAGTC+TGG | + | chr5_3:42080-42099 | Msa0789660:CDS | 50.0% | |
| ! | GAGAGGAAAGTCTGGTCTTC+CGG | + | chr5_3:42088-42107 | Msa0789660:CDS | 50.0% |
| ! | AGAGGAAAGTCTGGTCTTCC+GGG | + | chr5_3:42089-42108 | Msa0789660:CDS | 50.0% |
| TAGTGTGAGAGGCAACACAG+AGG | + | chr5_3:42183-42202 | Msa0789660:intron | 50.0% | |
| !! | AGTGTCGGTGCTACAAGCTC+AGG | + | chr5_3:41291-41310 | Msa0789660:CDS | 55.0% |
| TAGGGTTCACTGGGAAGCAG+AGG | + | chr5_3:41580-41599 | Msa0789660:CDS | 55.0% | |
| AGGGTTCACTGGGAAGCAGA+GGG | + | chr5_3:41581-41600 | Msa0789660:CDS | 55.0% | |
| !! | CGGAGGTGTCACTGTTTCGA+AGG | + | chr5_3:42004-42023 | Msa0789660:intron | 55.0% |
| ! | CGGAAGTTGATCCGAGAACC+AGG | + | chr5_3:42590-42609 | Msa0789660:CDS | 55.0% |
| ! | AGCATTGCGTGCCTGGTTCT+CGG | - | chr5_3:42604-42623 | None:intergenic | 55.0% |
| !! | AGTGTCGGTGCTACAAGCTC+AGG | + | chr5_3:41291-41310 | Msa0789660:CDS | 55.0% |
| TAGGGTTCACTGGGAAGCAG+AGG | + | chr5_3:41580-41599 | Msa0789660:CDS | 55.0% | |
| AGGGTTCACTGGGAAGCAGA+GGG | + | chr5_3:41581-41600 | Msa0789660:CDS | 55.0% | |
| !! | CGGAGGTGTCACTGTTTCGA+AGG | + | chr5_3:42004-42023 | Msa0789660:intron | 55.0% |
| ! | CGGAAGTTGATCCGAGAACC+AGG | + | chr5_3:42590-42609 | Msa0789660:CDS | 55.0% |
| ! | AGCATTGCGTGCCTGGTTCT+CGG | - | chr5_3:42604-42623 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 41242 | 42802 | 41242 | ID=Msa0789660;Name=Msa0789660 |
| chr5_3 | mRNA | 41242 | 42802 | 41242 | ID=Msa0789660-mRNA-1;Parent=Msa0789660;Name=Msa0789660-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0|0|0.75|1|1|4|0|229 |
| chr5_3 | exon | 41242 | 41691 | 41242 | ID=Msa0789660-mRNA-1:exon:5;Parent=Msa0789660-mRNA-1 |
| chr5_3 | exon | 42026 | 42110 | 42026 | ID=Msa0789660-mRNA-1:exon:6;Parent=Msa0789660-mRNA-1 |
| chr5_3 | exon | 42512 | 42624 | 42512 | ID=Msa0789660-mRNA-1:exon:7;Parent=Msa0789660-mRNA-1 |
| chr5_3 | exon | 42761 | 42802 | 42761 | ID=Msa0789660-mRNA-1:exon:8;Parent=Msa0789660-mRNA-1 |
| chr5_3 | CDS | 41242 | 41691 | 41242 | ID=Msa0789660-mRNA-1:cds;Parent=Msa0789660-mRNA-1 |
| chr5_3 | CDS | 42026 | 42110 | 42026 | ID=Msa0789660-mRNA-1:cds;Parent=Msa0789660-mRNA-1 |
| chr5_3 | CDS | 42512 | 42624 | 42512 | ID=Msa0789660-mRNA-1:cds;Parent=Msa0789660-mRNA-1 |
| chr5_3 | CDS | 42761 | 42802 | 42761 | ID=Msa0789660-mRNA-1:cds;Parent=Msa0789660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
