Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305870 | PNX82722.1 | 52.206 | 136 | 51 | 3 | 28 | 150 | 38 | 172 | 2.95e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305870 | A0A2K3LW02 | 52.206 | 136 | 51 | 3 | 28 | 150 | 38 | 172 | 1.41e-30 | 122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1305870 | 0.802040 | 6.774479e-49 | -8.615850e-47 |
| Msa0029910 | Msa1305870 | 0.806219 | 9.147518e-50 | -8.615850e-47 |
| Msa0110970 | Msa1305870 | 0.814099 | 1.830532e-51 | -8.615850e-47 |
| Msa0116770 | Msa1305870 | 0.806117 | 9.613637e-50 | -8.615850e-47 |
| Msa0638280 | Msa1305870 | 0.802538 | 5.349041e-49 | -8.615850e-47 |
| Msa0657970 | Msa1305870 | 0.806596 | 7.617734e-50 | -8.615850e-47 |
| Msa0684500 | Msa1305870 | 0.802220 | 6.219774e-49 | -8.615850e-47 |
| Msa0689010 | Msa1305870 | 0.807632 | 4.598451e-50 | -8.615850e-47 |
| Msa0693380 | Msa1305870 | 0.815031 | 1.138636e-51 | -8.615850e-47 |
| Msa0715470 | Msa1305870 | 0.823765 | 1.161534e-53 | -8.615850e-47 |
| Msa0727710 | Msa1305870 | 0.810981 | 8.796240e-51 | -8.615850e-47 |
| Msa0789660 | Msa1305870 | 0.971379 | 4.523813e-133 | -8.615850e-47 |
| Msa0790660 | Msa1305870 | -0.802453 | 5.571580e-49 | -8.615850e-47 |
| Msa0824680 | Msa1305870 | 0.819600 | 1.066700e-52 | -8.615850e-47 |
| Msa0840750 | Msa1305870 | 0.827547 | 1.473198e-54 | -8.615850e-47 |
| Msa0124340 | Msa1305870 | 0.816500 | 5.355822e-52 | -8.615850e-47 |
| Msa0157290 | Msa1305870 | 0.801716 | 7.897812e-49 | -8.615850e-47 |
| Msa0165210 | Msa1305870 | 0.805094 | 1.575873e-49 | -8.615850e-47 |
| Msa0165220 | Msa1305870 | 0.800550 | 1.367591e-48 | -8.615850e-47 |
| Msa0169920 | Msa1305870 | 0.807679 | 4.492710e-50 | -8.615850e-47 |
| Msa0212990 | Msa1305870 | 0.805885 | 1.075381e-49 | -8.615850e-47 |
| Msa1271300 | Msa1305870 | 0.800939 | 1.139151e-48 | -8.615850e-47 |
| Msa1278840 | Msa1305870 | 0.808289 | 3.331742e-50 | -8.615850e-47 |
| Msa1305870 | Msa1308380 | 0.811885 | 5.595894e-51 | -8.615850e-47 |
| Msa1305870 | Msa1384350 | 0.801779 | 7.663844e-49 | -8.615850e-47 |
| Msa1305870 | Msa1411020 | 0.806909 | 6.541263e-50 | -8.615850e-47 |
| Msa1305870 | Msa1424290 | 0.800588 | 1.343123e-48 | -8.615850e-47 |
| Msa1305870 | Msa1434350 | 0.801884 | 7.293264e-49 | -8.615850e-47 |
| Msa1305870 | Msa1439320 | 0.808472 | 3.045107e-50 | -8.615850e-47 |
| Msa0389340 | Msa1305870 | 0.801870 | 7.343753e-49 | -8.615850e-47 |
| Msa1027290 | Msa1305870 | 0.804664 | 1.937570e-49 | -8.615850e-47 |
| Msa1082500 | Msa1305870 | 0.861723 | 8.395122e-64 | -8.615850e-47 |
| Msa0243710 | Msa1305870 | 0.826601 | 2.480169e-54 | -8.615850e-47 |
| Msa0287650 | Msa1305870 | 0.811383 | 7.195396e-51 | -8.615850e-47 |
| Msa0323610 | Msa1305870 | 0.817828 | 2.693496e-52 | -8.615850e-47 |
| Msa0330340 | Msa1305870 | 0.804048 | 2.604748e-49 | -8.615850e-47 |
| Msa0334040 | Msa1305870 | 0.805022 | 1.631070e-49 | -8.615850e-47 |
| Msa1193290 | Msa1305870 | 0.803031 | 4.231988e-49 | -8.615850e-47 |
| Msa1197590 | Msa1305870 | 0.800470 | 1.419919e-48 | -8.615850e-47 |
| Msa1199220 | Msa1305870 | 0.802135 | 6.475940e-49 | -8.615850e-47 |
| Msa0484780 | Msa1305870 | 0.844487 | 7.335718e-59 | -8.615850e-47 |
| Msa0547760 | Msa1305870 | 0.807303 | 5.398962e-50 | -8.615850e-47 |
| Msa0562440 | Msa1305870 | 0.805268 | 1.449197e-49 | -8.615850e-47 |
| Msa0850960 | Msa1305870 | 0.808184 | 3.508263e-50 | -8.615850e-47 |
| Msa0880140 | Msa1305870 | 0.800203 | 1.608995e-48 | -8.615850e-47 |
| Msa0954550 | Msa1305870 | 0.806495 | 8.000753e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305870 | MtrunA17_Chr7g0246491 | 39.597 | 149 | 74 | 3 | 15 | 150 | 23 | 168 | 7.21e-21 | 90.5 |
| Msa1305870 | MtrunA17_Chr7g0246491 | 68.085 | 47 | 15 | 0 | 176 | 222 | 445 | 491 | 1.22e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305870 | AT4G00231.1 | 31.690 | 142 | 83 | 4 | 21 | 150 | 21 | 160 | 5.38e-13 | 67.8 |
Find 41 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACTTCCAAGTCTGATTC+TGG | 0.226508 | 8_4:-207502 | Msa1305870:CDS |
| ATACATTACAACCAAGTTAT+AGG | 0.254896 | 8_4:+206177 | None:intergenic |
| GATGTTGCATTGTTTGTTTA+TGG | 0.273918 | 8_4:-206797 | Msa1305870:CDS |
| GAGAGGAAAGTCTGGTCTTC+CGG | 0.301455 | 8_4:-206735 | Msa1305870:CDS |
| AATTTATTTCTTGAGCTTGA+TGG | 0.304112 | 8_4:-207337 | Msa1305870:CDS |
| AGGTTGGTTCTGATCACATT+AGG | 0.310156 | 8_4:-207276 | Msa1305870:CDS |
| CAAGCTCAAGAAATAAATTC+TGG | 0.355436 | 8_4:+207341 | None:intergenic |
| GGTTGGTTCTGATCACATTA+GGG | 0.398790 | 8_4:-207275 | Msa1305870:CDS |
| ATTTACAAGCATTGCGTGCC+TGG | 0.405672 | 8_4:+206215 | None:intergenic |
| AGCATTGCGTGCCTGGTTCT+CGG | 0.406257 | 8_4:+206222 | None:intergenic |
| AGACCAAGTACAGAAATTTC+AGG | 0.407898 | 8_4:+206261 | None:intergenic |
| GTGCCTGAAATTTCTGTACT+TGG | 0.416850 | 8_4:-206264 | Msa1305870:CDS |
| AGAGGAAAGTCTGGTCTTCC+GGG | 0.430672 | 8_4:-206734 | Msa1305870:intron |
| GATTCTGGATGTTCTAACCT+TGG | 0.434064 | 8_4:-207487 | Msa1305870:CDS |
| CTGATCACATTAGGGTTCAC+TGG | 0.435286 | 8_4:-207267 | Msa1305870:CDS |
| GGAATATTCAATAAATCCAT+TGG | 0.457488 | 8_4:-206776 | Msa1305870:CDS |
| CTCCTCAGAAACTTGTGTGC+TGG | 0.465813 | 8_4:-207376 | Msa1305870:CDS |
| CATGCAGTGAGAGGAAAGTC+TGG | 0.488208 | 8_4:-206743 | Msa1305870:CDS |
| AAGTTATAGGATTATTTCGT+GGG | 0.499396 | 8_4:+206190 | None:intergenic |
| CACGAAATAATCCTATAACT+TGG | 0.501095 | 8_4:-206188 | Msa1305870:CDS |
| CGGAAGTTGATCCGAGAACC+AGG | 0.501779 | 8_4:-206233 | Msa1305870:CDS |
| AGTGTCGGTGCTACAAGCTC+AGG | 0.512689 | 8_4:-207546 | Msa1305870:CDS |
| TGTTGCTGAGTTAAAGCTGC+AGG | 0.521628 | 8_4:-206298 | Msa1305870:CDS |
| CAAGTTATAGGATTATTTCG+TGG | 0.529133 | 8_4:+206189 | None:intergenic |
| AATATAATGATCTAAAGTAA+AGG | 0.534822 | 8_4:+207417 | None:intergenic |
| TCTTGGAAGACTTGGTACAA+AGG | 0.566523 | 8_4:-207194 | Msa1305870:CDS |
| TAGGGTTCACTGGGAAGCAG+AGG | 0.574106 | 8_4:-207257 | Msa1305870:CDS |
| CTCCAGCACACAAGTTTCTG+AGG | 0.575676 | 8_4:+207374 | None:intergenic |
| GTAATCACATGTGTTGGTGT+TGG | 0.576023 | 8_4:-207603 | None:intergenic |
| TGCATGCTCAAGAACTCCAA+TGG | 0.581796 | 8_4:+206760 | None:intergenic |
| TTGAAAGTAATCACATGTGT+TGG | 0.583921 | 8_4:-207609 | None:intergenic |
| TGATCACATTAGGGTTCACT+GGG | 0.589870 | 8_4:-207266 | Msa1305870:CDS |
| TGAGAAGTGTTATTTCCACC+TGG | 0.591111 | 8_4:-207228 | Msa1305870:CDS |
| GTTCTTGAGCATGCAGTGAG+AGG | 0.593467 | 8_4:-206752 | Msa1305870:CDS |
| TAAATTACCACCATACACAA+TGG | 0.620589 | 8_4:+207160 | None:intergenic |
| AGGGTTCACTGGGAAGCAGA+GGG | 0.629310 | 8_4:-207256 | Msa1305870:CDS |
| AGAACATCCAGAATCAGACT+TGG | 0.631308 | 8_4:+207495 | None:intergenic |
| TTCTGTACTTGGTCTTCGAG+CGG | 0.631603 | 8_4:-206253 | Msa1305870:CDS |
| AACAAGACTTCAATAAGTGT+CGG | 0.647526 | 8_4:-207561 | Msa1305870:CDS |
| ACATGTGTTGGTGTTGGACA+CGG | 0.650053 | 8_4:-207597 | Msa1305870:CDS |
| TTTGCGAGTGAAGTATACTG+AGG | 0.729154 | 8_4:+207440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATGATCTAAAGTAA+AGG | + | chr8_4:206363-206382 | None:intergenic | 15.0% |
| !!! | AATATAATGATCTAAAGTAA+AGG | + | chr8_4:206363-206382 | None:intergenic | 15.0% |
| !!! | ATCAGTTTTCATCTAAATTA+CGG | - | chr8_4:206876-206895 | Msa1305870:intron | 20.0% |
| !! | GTTTCTTCTTAAAATCATAT+TGG | - | chr8_4:206916-206935 | Msa1305870:intron | 20.0% |
| !!! | ATCATATTGGAAATTTTGAA+CGG | - | chr8_4:206929-206948 | Msa1305870:intron | 20.0% |
| !!! | ATCAGTTTTCATCTAAATTA+CGG | - | chr8_4:206876-206895 | Msa1305870:intron | 20.0% |
| !! | GTTTCTTCTTAAAATCATAT+TGG | - | chr8_4:206916-206935 | Msa1305870:intron | 20.0% |
| !!! | ATCATATTGGAAATTTTGAA+CGG | - | chr8_4:206929-206948 | Msa1305870:intron | 20.0% |
| !! | AATTTATTTCTTGAGCTTGA+TGG | - | chr8_4:206440-206459 | Msa1305870:intron | 25.0% |
| !! | TCATATTGGAAATTTTGAAC+GGG | - | chr8_4:206930-206949 | Msa1305870:intron | 25.0% |
| ! | GGAATATTCAATAAATCCAT+TGG | - | chr8_4:207001-207020 | Msa1305870:intron | 25.0% |
| ! | ATTCATTTCCTGATTATTGT+CGG | + | chr8_4:207241-207260 | None:intergenic | 25.0% |
| ! | AAACAATCTGATAATCAAGA+CGG | - | chr8_4:207262-207281 | Msa1305870:CDS | 25.0% |
| ! | AAGTTATAGGATTATTTCGT+GGG | + | chr8_4:207590-207609 | None:intergenic | 25.0% |
| !! | AATTTATTTCTTGAGCTTGA+TGG | - | chr8_4:206440-206459 | Msa1305870:intron | 25.0% |
| !! | TCATATTGGAAATTTTGAAC+GGG | - | chr8_4:206930-206949 | Msa1305870:intron | 25.0% |
| ! | GGAATATTCAATAAATCCAT+TGG | - | chr8_4:207001-207020 | Msa1305870:intron | 25.0% |
| ! | ATTCATTTCCTGATTATTGT+CGG | + | chr8_4:207241-207260 | None:intergenic | 25.0% |
| ! | AAACAATCTGATAATCAAGA+CGG | - | chr8_4:207262-207281 | Msa1305870:CDS | 25.0% |
| ! | AAGTTATAGGATTATTTCGT+GGG | + | chr8_4:207590-207609 | None:intergenic | 25.0% |
| AACAAGACTTCAATAAGTGT+CGG | - | chr8_4:206216-206235 | Msa1305870:CDS | 30.0% | |
| !!! | TGAAAACTCTTTTGAAACCA+AGG | + | chr8_4:206310-206329 | None:intergenic | 30.0% |
| CAAGCTCAAGAAATAAATTC+TGG | + | chr8_4:206439-206458 | None:intergenic | 30.0% | |
| !! | TGTTTTTGATCCATTGTGTA+TGG | - | chr8_4:206607-206626 | Msa1305870:intron | 30.0% |
| TAAATTACCACCATACACAA+TGG | + | chr8_4:206620-206639 | None:intergenic | 30.0% | |
| ! | CGGTATTGTTTTCTAGATTA+CGG | - | chr8_4:206810-206829 | Msa1305870:intron | 30.0% |
| ! | GTTTTCTAGATTACGGTTTA+TGG | - | chr8_4:206817-206836 | Msa1305870:intron | 30.0% |
| GATGTTGCATTGTTTGTTTA+TGG | - | chr8_4:206980-206999 | Msa1305870:intron | 30.0% | |
| CTACTCGCTTATTATATTGA+AGG | - | chr8_4:207098-207117 | Msa1305870:intron | 30.0% | |
| ATAAATTCCTTGTAAGGTCA+TGG | + | chr8_4:207307-207326 | None:intergenic | 30.0% | |
| TCTCTCATAAATTCCTTGTA+AGG | + | chr8_4:207313-207332 | None:intergenic | 30.0% | |
| CAAGTTATAGGATTATTTCG+TGG | + | chr8_4:207591-207610 | None:intergenic | 30.0% | |
| CACGAAATAATCCTATAACT+TGG | - | chr8_4:207589-207608 | Msa1305870:CDS | 30.0% | |
| AACAAGACTTCAATAAGTGT+CGG | - | chr8_4:206216-206235 | Msa1305870:CDS | 30.0% | |
| !!! | TGAAAACTCTTTTGAAACCA+AGG | + | chr8_4:206310-206329 | None:intergenic | 30.0% |
| CAAGCTCAAGAAATAAATTC+TGG | + | chr8_4:206439-206458 | None:intergenic | 30.0% | |
| !! | TGTTTTTGATCCATTGTGTA+TGG | - | chr8_4:206607-206626 | Msa1305870:intron | 30.0% |
| TAAATTACCACCATACACAA+TGG | + | chr8_4:206620-206639 | None:intergenic | 30.0% | |
| ! | CGGTATTGTTTTCTAGATTA+CGG | - | chr8_4:206810-206829 | Msa1305870:intron | 30.0% |
| ! | GTTTTCTAGATTACGGTTTA+TGG | - | chr8_4:206817-206836 | Msa1305870:intron | 30.0% |
| GATGTTGCATTGTTTGTTTA+TGG | - | chr8_4:206980-206999 | Msa1305870:intron | 30.0% | |
| CTACTCGCTTATTATATTGA+AGG | - | chr8_4:207098-207117 | Msa1305870:intron | 30.0% | |
| ATAAATTCCTTGTAAGGTCA+TGG | + | chr8_4:207307-207326 | None:intergenic | 30.0% | |
| TCTCTCATAAATTCCTTGTA+AGG | + | chr8_4:207313-207332 | None:intergenic | 30.0% | |
| CAAGTTATAGGATTATTTCG+TGG | + | chr8_4:207591-207610 | None:intergenic | 30.0% | |
| CACGAAATAATCCTATAACT+TGG | - | chr8_4:207589-207608 | Msa1305870:CDS | 30.0% | |
| !! | GTTAGAGTATTTTGAGTCAG+AGG | - | chr8_4:206481-206500 | Msa1305870:intron | 35.0% |
| AAGAGACAAAAAAAACCAGG+TGG | + | chr8_4:206567-206586 | None:intergenic | 35.0% | |
| !!! | ACCTGGTTTTTTTTGTCTCT+TGG | - | chr8_4:206566-206585 | Msa1305870:intron | 35.0% |
| TCCAAGAGACAAAAAAAACC+AGG | + | chr8_4:206570-206589 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTCTTGGAAGACT+TGG | - | chr8_4:206575-206594 | Msa1305870:intron | 35.0% |
| ! | TTTTGATCCATTGTGTATGG+TGG | - | chr8_4:206610-206629 | Msa1305870:intron | 35.0% |
| GTAATTTACACATGCTGTGA+TGG | - | chr8_4:206632-206651 | Msa1305870:intron | 35.0% | |
| AAAGCTCACCAAATCATTCA+GGG | + | chr8_4:206661-206680 | None:intergenic | 35.0% | |
| TAAAGCTCACCAAATCATTC+AGG | + | chr8_4:206662-206681 | None:intergenic | 35.0% | |
| ! | TGAGCTTTATAGTCTCTCAA+TGG | - | chr8_4:206673-206692 | Msa1305870:intron | 35.0% |
| !!! | CTCACTATTTTTACCACTAC+AGG | + | chr8_4:206703-206722 | None:intergenic | 35.0% |
| !! | ACTTCTTCTTCTGCTAGTTT+TGG | - | chr8_4:206724-206743 | Msa1305870:intron | 35.0% |
| ! | CCTTGAAGAATCGTGATTTT+CGG | - | chr8_4:206790-206809 | Msa1305870:CDS | 35.0% |
| ! | GAAATTTTGAACGGGTGAAT+CGG | - | chr8_4:206938-206957 | Msa1305870:intron | 35.0% |
| TGATTATTGTCGGAGGTTTA+AGG | + | chr8_4:207231-207250 | None:intergenic | 35.0% | |
| TTAAACCTCCGACAATAATC+AGG | - | chr8_4:207230-207249 | Msa1305870:CDS | 35.0% | |
| AGAGACATAGTTGCACTTAT+TGG | - | chr8_4:207328-207347 | Msa1305870:CDS | 35.0% | |
| TTGGCAGTTGTGTTTATAGA+AGG | - | chr8_4:207347-207366 | Msa1305870:CDS | 35.0% | |
| AGACCAAGTACAGAAATTTC+AGG | + | chr8_4:207519-207538 | None:intergenic | 35.0% | |
| !! | GTTAGAGTATTTTGAGTCAG+AGG | - | chr8_4:206481-206500 | Msa1305870:intron | 35.0% |
| AAGAGACAAAAAAAACCAGG+TGG | + | chr8_4:206567-206586 | None:intergenic | 35.0% | |
| !!! | ACCTGGTTTTTTTTGTCTCT+TGG | - | chr8_4:206566-206585 | Msa1305870:intron | 35.0% |
| TCCAAGAGACAAAAAAAACC+AGG | + | chr8_4:206570-206589 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTCTTGGAAGACT+TGG | - | chr8_4:206575-206594 | Msa1305870:intron | 35.0% |
| ! | TTTTGATCCATTGTGTATGG+TGG | - | chr8_4:206610-206629 | Msa1305870:intron | 35.0% |
| GTAATTTACACATGCTGTGA+TGG | - | chr8_4:206632-206651 | Msa1305870:intron | 35.0% | |
| AAAGCTCACCAAATCATTCA+GGG | + | chr8_4:206661-206680 | None:intergenic | 35.0% | |
| TAAAGCTCACCAAATCATTC+AGG | + | chr8_4:206662-206681 | None:intergenic | 35.0% | |
| ! | TGAGCTTTATAGTCTCTCAA+TGG | - | chr8_4:206673-206692 | Msa1305870:intron | 35.0% |
| !!! | CTCACTATTTTTACCACTAC+AGG | + | chr8_4:206703-206722 | None:intergenic | 35.0% |
| !! | ACTTCTTCTTCTGCTAGTTT+TGG | - | chr8_4:206724-206743 | Msa1305870:intron | 35.0% |
| ! | CCTTGAAGAATCGTGATTTT+CGG | - | chr8_4:206790-206809 | Msa1305870:CDS | 35.0% |
| ! | GAAATTTTGAACGGGTGAAT+CGG | - | chr8_4:206938-206957 | Msa1305870:intron | 35.0% |
| TGATTATTGTCGGAGGTTTA+AGG | + | chr8_4:207231-207250 | None:intergenic | 35.0% | |
| TTAAACCTCCGACAATAATC+AGG | - | chr8_4:207230-207249 | Msa1305870:CDS | 35.0% | |
| AGAGACATAGTTGCACTTAT+TGG | - | chr8_4:207328-207347 | Msa1305870:CDS | 35.0% | |
| TTGGCAGTTGTGTTTATAGA+AGG | - | chr8_4:207347-207366 | Msa1305870:CDS | 35.0% | |
| AGACCAAGTACAGAAATTTC+AGG | + | chr8_4:207519-207538 | None:intergenic | 35.0% | |
| AGAACATCCAGAATCAGACT+TGG | + | chr8_4:206285-206304 | None:intergenic | 40.0% | |
| GATTCTGGATGTTCTAACCT+TGG | - | chr8_4:206290-206309 | Msa1305870:CDS | 40.0% | |
| TTTGCGAGTGAAGTATACTG+AGG | + | chr8_4:206340-206359 | None:intergenic | 40.0% | |
| !! | GAGTATTTTGAGTCAGAGGT+TGG | - | chr8_4:206485-206504 | Msa1305870:intron | 40.0% |
| !! | AGGTTGGTTCTGATCACATT+AGG | - | chr8_4:206501-206520 | Msa1305870:intron | 40.0% |
| !! | GGTTGGTTCTGATCACATTA+GGG | - | chr8_4:206502-206521 | Msa1305870:intron | 40.0% |
| TGATCACATTAGGGTTCACT+GGG | - | chr8_4:206511-206530 | Msa1305870:intron | 40.0% | |
| !! | TGAGAAGTGTTATTTCCACC+TGG | - | chr8_4:206549-206568 | Msa1305870:intron | 40.0% |
| ! | TCTTGGAAGACTTGGTACAA+AGG | - | chr8_4:206583-206602 | Msa1305870:intron | 40.0% |
| GATGGAAACCCTGAATGATT+TGG | - | chr8_4:206650-206669 | Msa1305870:intron | 40.0% | |
| CCGAAAATCACGATTCTTCA+AGG | + | chr8_4:206793-206812 | None:intergenic | 40.0% | |
| CGGTTTATGGATATTCTCGA+TGG | - | chr8_4:206830-206849 | Msa1305870:intron | 40.0% | |
| GTGAATCTACTGCAATGCAA+TGG | - | chr8_4:207065-207084 | Msa1305870:intron | 40.0% | |
| TGCAATGCAATGGATGTTCT+TGG | - | chr8_4:207075-207094 | Msa1305870:intron | 40.0% | |
| CATTTCCTGATTATTGTCGG+AGG | + | chr8_4:207238-207257 | None:intergenic | 40.0% | |
| ACGCACAAGATGAAATCATG+AGG | - | chr8_4:207374-207393 | Msa1305870:CDS | 40.0% | |
| CACAAGATGAAATCATGAGG+AGG | - | chr8_4:207377-207396 | Msa1305870:CDS | 40.0% | |
| GATGAAATCATGAGGAGGAA+TGG | - | chr8_4:207382-207401 | Msa1305870:CDS | 40.0% | |
| GTGCCTGAAATTTCTGTACT+TGG | - | chr8_4:207513-207532 | Msa1305870:CDS | 40.0% | |
| AGAACATCCAGAATCAGACT+TGG | + | chr8_4:206285-206304 | None:intergenic | 40.0% | |
| GATTCTGGATGTTCTAACCT+TGG | - | chr8_4:206290-206309 | Msa1305870:CDS | 40.0% | |
| TTTGCGAGTGAAGTATACTG+AGG | + | chr8_4:206340-206359 | None:intergenic | 40.0% | |
| !! | GAGTATTTTGAGTCAGAGGT+TGG | - | chr8_4:206485-206504 | Msa1305870:intron | 40.0% |
| !! | AGGTTGGTTCTGATCACATT+AGG | - | chr8_4:206501-206520 | Msa1305870:intron | 40.0% |
| !! | GGTTGGTTCTGATCACATTA+GGG | - | chr8_4:206502-206521 | Msa1305870:intron | 40.0% |
| TGATCACATTAGGGTTCACT+GGG | - | chr8_4:206511-206530 | Msa1305870:intron | 40.0% | |
| !! | TGAGAAGTGTTATTTCCACC+TGG | - | chr8_4:206549-206568 | Msa1305870:intron | 40.0% |
| ! | TCTTGGAAGACTTGGTACAA+AGG | - | chr8_4:206583-206602 | Msa1305870:intron | 40.0% |
| GATGGAAACCCTGAATGATT+TGG | - | chr8_4:206650-206669 | Msa1305870:intron | 40.0% | |
| CCGAAAATCACGATTCTTCA+AGG | + | chr8_4:206793-206812 | None:intergenic | 40.0% | |
| CGGTTTATGGATATTCTCGA+TGG | - | chr8_4:206830-206849 | Msa1305870:intron | 40.0% | |
| GTGAATCTACTGCAATGCAA+TGG | - | chr8_4:207065-207084 | Msa1305870:intron | 40.0% | |
| TGCAATGCAATGGATGTTCT+TGG | - | chr8_4:207075-207094 | Msa1305870:intron | 40.0% | |
| CATTTCCTGATTATTGTCGG+AGG | + | chr8_4:207238-207257 | None:intergenic | 40.0% | |
| ACGCACAAGATGAAATCATG+AGG | - | chr8_4:207374-207393 | Msa1305870:CDS | 40.0% | |
| CACAAGATGAAATCATGAGG+AGG | - | chr8_4:207377-207396 | Msa1305870:CDS | 40.0% | |
| GATGAAATCATGAGGAGGAA+TGG | - | chr8_4:207382-207401 | Msa1305870:CDS | 40.0% | |
| GTGCCTGAAATTTCTGTACT+TGG | - | chr8_4:207513-207532 | Msa1305870:CDS | 40.0% | |
| CTCACTTCCAAGTCTGATTC+TGG | - | chr8_4:206275-206294 | Msa1305870:CDS | 45.0% | |
| CTGATCACATTAGGGTTCAC+TGG | - | chr8_4:206510-206529 | Msa1305870:intron | 45.0% | |
| ! | TCTCAATGGTTTGCCTGTAG+TGG | - | chr8_4:206687-206706 | Msa1305870:intron | 45.0% |
| !!! | CTGCTAGTTTTGGTGAGTCT+TGG | - | chr8_4:206734-206753 | Msa1305870:intron | 45.0% |
| ! | ATTTTGAACGGGTGAATCGG+AGG | - | chr8_4:206941-206960 | Msa1305870:intron | 45.0% |
| TGCATGCTCAAGAACTCCAA+TGG | + | chr8_4:207020-207039 | None:intergenic | 45.0% | |
| TGCATTGCAGTAGATTCACC+CGG | + | chr8_4:207064-207083 | None:intergenic | 45.0% | |
| ! | TGTGCTCATGATAGTGTGAG+AGG | - | chr8_4:207126-207145 | Msa1305870:intron | 45.0% |
| !!! | GCTGCTTTTGATTCTGCTTG+TGG | - | chr8_4:207204-207223 | Msa1305870:CDS | 45.0% |
| CTTGTAAGGTCATGGTTTCG+AGG | + | chr8_4:207299-207318 | None:intergenic | 45.0% | |
| CTCGAAACCATGACCTTACA+AGG | - | chr8_4:207297-207316 | Msa1305870:CDS | 45.0% | |
| TGTTGCTGAGTTAAAGCTGC+AGG | - | chr8_4:207479-207498 | Msa1305870:CDS | 45.0% | |
| ! | TTCTGTACTTGGTCTTCGAG+CGG | - | chr8_4:207524-207543 | Msa1305870:CDS | 45.0% |
| ! | ATTTACAAGCATTGCGTGCC+TGG | + | chr8_4:207565-207584 | None:intergenic | 45.0% |
| CTCACTTCCAAGTCTGATTC+TGG | - | chr8_4:206275-206294 | Msa1305870:CDS | 45.0% | |
| CTGATCACATTAGGGTTCAC+TGG | - | chr8_4:206510-206529 | Msa1305870:intron | 45.0% | |
| ! | TCTCAATGGTTTGCCTGTAG+TGG | - | chr8_4:206687-206706 | Msa1305870:intron | 45.0% |
| !!! | CTGCTAGTTTTGGTGAGTCT+TGG | - | chr8_4:206734-206753 | Msa1305870:intron | 45.0% |
| ! | ATTTTGAACGGGTGAATCGG+AGG | - | chr8_4:206941-206960 | Msa1305870:intron | 45.0% |
| TGCATGCTCAAGAACTCCAA+TGG | + | chr8_4:207020-207039 | None:intergenic | 45.0% | |
| TGCATTGCAGTAGATTCACC+CGG | + | chr8_4:207064-207083 | None:intergenic | 45.0% | |
| ! | TGTGCTCATGATAGTGTGAG+AGG | - | chr8_4:207126-207145 | Msa1305870:intron | 45.0% |
| !!! | GCTGCTTTTGATTCTGCTTG+TGG | - | chr8_4:207204-207223 | Msa1305870:CDS | 45.0% |
| CTTGTAAGGTCATGGTTTCG+AGG | + | chr8_4:207299-207318 | None:intergenic | 45.0% | |
| CTCGAAACCATGACCTTACA+AGG | - | chr8_4:207297-207316 | Msa1305870:CDS | 45.0% | |
| TGTTGCTGAGTTAAAGCTGC+AGG | - | chr8_4:207479-207498 | Msa1305870:CDS | 45.0% | |
| ! | TTCTGTACTTGGTCTTCGAG+CGG | - | chr8_4:207524-207543 | Msa1305870:CDS | 45.0% |
| ! | ATTTACAAGCATTGCGTGCC+TGG | + | chr8_4:207565-207584 | None:intergenic | 45.0% |
| CTCCTCAGAAACTTGTGTGC+TGG | - | chr8_4:206401-206420 | Msa1305870:intron | 50.0% | |
| CTCCAGCACACAAGTTTCTG+AGG | + | chr8_4:206406-206425 | None:intergenic | 50.0% | |
| GTTCTTGAGCATGCAGTGAG+AGG | - | chr8_4:207025-207044 | Msa1305870:intron | 50.0% | |
| CATGCAGTGAGAGGAAAGTC+TGG | - | chr8_4:207034-207053 | Msa1305870:intron | 50.0% | |
| ! | GAGAGGAAAGTCTGGTCTTC+CGG | - | chr8_4:207042-207061 | Msa1305870:intron | 50.0% |
| ! | AGAGGAAAGTCTGGTCTTCC+GGG | - | chr8_4:207043-207062 | Msa1305870:intron | 50.0% |
| TAGTGTGAGAGGCAACACAG+AGG | - | chr8_4:207137-207156 | Msa1305870:intron | 50.0% | |
| CTCCTCAGAAACTTGTGTGC+TGG | - | chr8_4:206401-206420 | Msa1305870:intron | 50.0% | |
| CTCCAGCACACAAGTTTCTG+AGG | + | chr8_4:206406-206425 | None:intergenic | 50.0% | |
| GTTCTTGAGCATGCAGTGAG+AGG | - | chr8_4:207025-207044 | Msa1305870:intron | 50.0% | |
| CATGCAGTGAGAGGAAAGTC+TGG | - | chr8_4:207034-207053 | Msa1305870:intron | 50.0% | |
| ! | GAGAGGAAAGTCTGGTCTTC+CGG | - | chr8_4:207042-207061 | Msa1305870:intron | 50.0% |
| ! | AGAGGAAAGTCTGGTCTTCC+GGG | - | chr8_4:207043-207062 | Msa1305870:intron | 50.0% |
| TAGTGTGAGAGGCAACACAG+AGG | - | chr8_4:207137-207156 | Msa1305870:intron | 50.0% | |
| !! | AGTGTCGGTGCTACAAGCTC+AGG | - | chr8_4:206231-206250 | Msa1305870:CDS | 55.0% |
| TAGGGTTCACTGGGAAGCAG+AGG | - | chr8_4:206520-206539 | Msa1305870:intron | 55.0% | |
| AGGGTTCACTGGGAAGCAGA+GGG | - | chr8_4:206521-206540 | Msa1305870:intron | 55.0% | |
| !! | CGGAGGTGTCACTGTTTCGA+AGG | - | chr8_4:206958-206977 | Msa1305870:intron | 55.0% |
| ! | CGGAAGTTGATCCGAGAACC+AGG | - | chr8_4:207544-207563 | Msa1305870:CDS | 55.0% |
| ! | AGCATTGCGTGCCTGGTTCT+CGG | + | chr8_4:207558-207577 | None:intergenic | 55.0% |
| !! | AGTGTCGGTGCTACAAGCTC+AGG | - | chr8_4:206231-206250 | Msa1305870:CDS | 55.0% |
| TAGGGTTCACTGGGAAGCAG+AGG | - | chr8_4:206520-206539 | Msa1305870:intron | 55.0% | |
| AGGGTTCACTGGGAAGCAGA+GGG | - | chr8_4:206521-206540 | Msa1305870:intron | 55.0% | |
| !! | CGGAGGTGTCACTGTTTCGA+AGG | - | chr8_4:206958-206977 | Msa1305870:intron | 55.0% |
| ! | CGGAAGTTGATCCGAGAACC+AGG | - | chr8_4:207544-207563 | Msa1305870:CDS | 55.0% |
| ! | AGCATTGCGTGCCTGGTTCT+CGG | + | chr8_4:207558-207577 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 206182 | 207617 | 206182 | ID=Msa1305870;Name=Msa1305870 |
| chr8_4 | mRNA | 206182 | 207617 | 206182 | ID=Msa1305870-mRNA-1;Parent=Msa1305870;Name=Msa1305870-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|228 |
| chr8_4 | exon | 207168 | 207617 | 207168 | ID=Msa1305870-mRNA-1:exon:34;Parent=Msa1305870-mRNA-1 |
| chr8_4 | exon | 206735 | 206819 | 206735 | ID=Msa1305870-mRNA-1:exon:33;Parent=Msa1305870-mRNA-1 |
| chr8_4 | exon | 206182 | 206333 | 206182 | ID=Msa1305870-mRNA-1:exon:32;Parent=Msa1305870-mRNA-1 |
| chr8_4 | CDS | 207168 | 207617 | 207168 | ID=Msa1305870-mRNA-1:cds;Parent=Msa1305870-mRNA-1 |
| chr8_4 | CDS | 206735 | 206819 | 206735 | ID=Msa1305870-mRNA-1:cds;Parent=Msa1305870-mRNA-1 |
| chr8_4 | CDS | 206182 | 206333 | 206182 | ID=Msa1305870-mRNA-1:cds;Parent=Msa1305870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
