Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837420 | XP_003611972.1 | 91.954 | 522 | 7 | 1 | 1 | 522 | 1 | 487 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837420 | sp|O23215|PBRP1_ARATH | 79.032 | 372 | 36 | 4 | 1 | 369 | 1 | 333 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837420 | G7KC98 | 91.954 | 522 | 7 | 1 | 1 | 522 | 1 | 487 | 0.0 | 905 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052350 | Msa0837420 | 0.809872 | 1.526198e-50 | -8.615850e-47 |
| Msa0112300 | Msa0837420 | 0.811705 | 6.125526e-51 | -8.615850e-47 |
| Msa0648240 | Msa0837420 | 0.801976 | 6.984342e-49 | -8.615850e-47 |
| Msa0669720 | Msa0837420 | -0.802150 | 6.430299e-49 | -8.615850e-47 |
| Msa0683600 | Msa0837420 | -0.812777 | 3.574707e-51 | -8.615850e-47 |
| Msa0716420 | Msa0837420 | 0.891577 | 3.498225e-74 | -8.615850e-47 |
| Msa0799010 | Msa0837420 | 0.887620 | 1.216036e-72 | -8.615850e-47 |
| Msa0837420 | Msa0860900 | 0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0837420 | Msa0943270 | -0.804269 | 2.342512e-49 | -8.615850e-47 |
| Msa0837420 | Msa1002600 | 0.896325 | 4.110039e-76 | -8.615850e-47 |
| Msa0837420 | Msa1029080 | 0.806576 | 7.691073e-50 | -8.615850e-47 |
| Msa0837420 | Msa1076810 | 0.803227 | 3.854124e-49 | -8.615850e-47 |
| Msa0837420 | Msa1100530 | 0.805307 | 1.422092e-49 | -8.615850e-47 |
| Msa0837420 | Msa1103660 | 0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0837420 | Msa1125790 | 0.807190 | 5.705695e-50 | -8.615850e-47 |
| Msa0837420 | Msa1156170 | 0.802705 | 4.942550e-49 | -8.615850e-47 |
| Msa0837420 | Msa1178370 | -0.801197 | 1.008615e-48 | -8.615850e-47 |
| Msa0837420 | Msa1188600 | 0.809216 | 2.111209e-50 | -8.615850e-47 |
| Msa0837420 | Msa1226610 | -0.806314 | 8.734940e-50 | -8.615850e-47 |
| Msa0837420 | Msa1256270 | 0.830239 | 3.284576e-55 | -8.615850e-47 |
| Msa0837420 | Msa1293480 | 0.814372 | 1.592923e-51 | -8.615850e-47 |
| Msa0837420 | Msa1296460 | 0.829264 | 5.672752e-55 | -8.615850e-47 |
| Msa0837420 | Msa1417810 | 0.826074 | 3.311622e-54 | -8.615850e-47 |
| Msa0837420 | Msa1418960 | 0.818799 | 1.622923e-52 | -8.615850e-47 |
| Msa0837420 | Msa1445400 | 0.826821 | 2.198180e-54 | -8.615850e-47 |
| Msa0837420 | Msa1449350 | 0.824463 | 7.962142e-54 | -8.615850e-47 |
| Msa0837420 | Msa1465610 | 0.801711 | 7.914765e-49 | -8.615850e-47 |
| Msa0140510 | Msa0837420 | 0.827002 | 1.989370e-54 | -8.615850e-47 |
| Msa0140520 | Msa0837420 | 0.807554 | 4.776758e-50 | -8.615850e-47 |
| Msa0175290 | Msa0837420 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
| Msa0219250 | Msa0837420 | 0.804848 | 1.773536e-49 | -8.615850e-47 |
| Msa0370160 | Msa0837420 | 0.823380 | 1.428975e-53 | -8.615850e-47 |
| Msa0437690 | Msa0837420 | 0.811400 | 7.134859e-51 | -8.615850e-47 |
| Msa0443430 | Msa0837420 | -0.822846 | 1.903757e-53 | -8.615850e-47 |
| Msa0258880 | Msa0837420 | 0.808573 | 2.898792e-50 | -8.615850e-47 |
| Msa0271890 | Msa0837420 | -0.804814 | 1.802786e-49 | -8.615850e-47 |
| Msa0295000 | Msa0837420 | 0.806288 | 8.847176e-50 | -8.615850e-47 |
| Msa0296980 | Msa0837420 | 0.802690 | 4.978172e-49 | -8.615850e-47 |
| Msa0310860 | Msa0837420 | -0.805680 | 1.187804e-49 | -8.615850e-47 |
| Msa0509950 | Msa0837420 | 0.810539 | 1.096391e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837420 | MtrunA17_Chr5g0403861 | 91.954 | 522 | 7 | 1 | 1 | 522 | 1 | 487 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837420 | AT4G36650.1 | 79.032 | 372 | 36 | 4 | 1 | 369 | 1 | 333 | 0.0 | 569 |
| Msa0837420 | AT4G36650.2 | 67.317 | 410 | 79 | 7 | 1 | 398 | 1 | 367 | 9.48e-177 | 502 |
Find 152 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATTCATTTCAGTATTC+TGG | 0.159062 | 5_4:-11398073 | None:intergenic |
| GATTGCAAGTGTCGAATATT+TGG | 0.233569 | 5_4:-11398028 | None:intergenic |
| TGCCATTTGGCTTGTTTCTT+AGG | 0.236466 | 5_4:+11398172 | Msa0837420:three_prime_UTR |
| CTCAGCTGCCGCCATATATT+TGG | 0.241130 | 5_4:+11397436 | Msa0837420:CDS |
| CCCACAACCTTAATTGCTTC+TGG | 0.251621 | 5_4:+11397620 | Msa0837420:CDS |
| ACCAGTTACTTTGCAAATTT+CGG | 0.256850 | 5_4:-11397492 | None:intergenic |
| AATATAACCTGAAGGGTTCT+AGG | 0.270602 | 5_4:-11395120 | None:intergenic |
| TATAGAGGTTACTTCTTCTT+TGG | 0.274158 | 5_4:+11397670 | Msa0837420:CDS |
| GATATAGAATTGCTGTTAAT+AGG | 0.275872 | 5_4:-11396868 | None:intergenic |
| GTCTTCTTCTTCGTTGGTTT+CGG | 0.282449 | 5_4:-11394755 | None:intergenic |
| TGCTACTGCTGCTCTTGTTC+AGG | 0.283370 | 5_4:+11395077 | Msa0837420:CDS |
| CCTTGCGCCGCTGAACAGTA+TGG | 0.285793 | 5_4:-11394559 | None:intergenic |
| GTAATTCTTTATACACTTTA+CGG | 0.287548 | 5_4:-11397532 | None:intergenic |
| GTGTTGTTGTTGATAATCTT+AGG | 0.297419 | 5_4:+11394926 | Msa0837420:CDS |
| AGAACGTCCAGAAGCAATTA+AGG | 0.300940 | 5_4:-11397627 | None:intergenic |
| CGGGAAATACATCAAGATAC+TGG | 0.318001 | 5_4:+11396822 | Msa0837420:CDS |
| GCGGCAGCTGAGATGCTAAT+TGG | 0.320894 | 5_4:-11397425 | None:intergenic |
| CTGCTACTTGTTTGAGAAAT+CGG | 0.322311 | 5_4:+11395040 | Msa0837420:CDS |
| CTCTGTTATGAGGTCGCTTT+CGG | 0.324574 | 5_4:+11397985 | Msa0837420:CDS |
| ATAAAGAATTACTGGAGAAT+TGG | 0.329959 | 5_4:+11397543 | Msa0837420:CDS |
| GTGACCTCTACCATGGGTTC+AGG | 0.330609 | 5_4:-11397893 | None:intergenic |
| GTAAAGCGGGCTGGGCTCTA+AGG | 0.334203 | 5_4:-11394821 | None:intergenic |
| TTCTCTGTACTTGTGTTCAA+TGG | 0.341981 | 5_4:-11394513 | None:intergenic |
| TAAAGTGTATAAAGAATTAC+TGG | 0.348175 | 5_4:+11397535 | Msa0837420:CDS |
| TGAAATGAGTAGGTTTCTTA+AGG | 0.355749 | 5_4:+11398124 | Msa0837420:three_prime_UTR |
| GGTTTGTTTGGTTTAAATTC+CGG | 0.356896 | 5_4:-11397707 | None:intergenic |
| TTGGTTTGGTTGAGAGTGGG+GGG | 0.359289 | 5_4:-11394730 | None:intergenic |
| CTACCATGGGTTCAGGTTGT+TGG | 0.366695 | 5_4:-11397886 | None:intergenic |
| TTCTTCGTTGGTTTCGGTGT+TGG | 0.368521 | 5_4:-11394749 | None:intergenic |
| CTATTCAGCAGTCAACGTTT+TGG | 0.370077 | 5_4:+11397777 | Msa0837420:CDS |
| GCCCGCTCCGGAGGAACAGC+TGG | 0.371273 | 5_4:-11397593 | None:intergenic |
| TAAAGAATTACTGGAGAATT+GGG | 0.376158 | 5_4:+11397544 | Msa0837420:CDS |
| TCGGCCTCATTAGGTTTGTT+TGG | 0.386243 | 5_4:-11397719 | None:intergenic |
| TCCATTGAATCTAAAACATT+CGG | 0.388238 | 5_4:-11397839 | None:intergenic |
| TTTGGATTCAGAAAATTTGC+CGG | 0.392454 | 5_4:+11397688 | Msa0837420:CDS |
| CGTTGGTTTCGGTGTTGGTT+TGG | 0.400396 | 5_4:-11394744 | None:intergenic |
| GTGTTGGTTTGGTTGAGAGT+GGG | 0.400909 | 5_4:-11394733 | None:intergenic |
| GCCGAAATTTGCAAAGTAAC+TGG | 0.401723 | 5_4:+11397491 | Msa0837420:CDS |
| TTTGGGTCGCACTGGGAAGT+TGG | 0.408622 | 5_4:-11397805 | None:intergenic |
| TCAAGAACCTAGAACCCTTC+AGG | 0.414329 | 5_4:+11395113 | Msa0837420:CDS |
| AATGTGGCACAAAAGGAAAT+CGG | 0.414393 | 5_4:+11396802 | Msa0837420:CDS |
| TGCCGCCAATGTGGCACAAA+AGG | 0.415436 | 5_4:+11396795 | Msa0837420:CDS |
| TTGGGTCGCACTGGGAAGTT+GGG | 0.415514 | 5_4:-11397804 | None:intergenic |
| TTAGATTCAATGGATATTGA+TGG | 0.416703 | 5_4:+11397848 | Msa0837420:CDS |
| GAATGGGTCTTCTTCTTCGT+TGG | 0.417262 | 5_4:-11394761 | None:intergenic |
| TATATATGTATTGTGCCATT+TGG | 0.417274 | 5_4:+11398159 | Msa0837420:three_prime_UTR |
| AACAGCTGGGGTGTAATTAG+AGG | 0.420498 | 5_4:-11397579 | None:intergenic |
| ATAGATGTTTCGTCGATACT+TGG | 0.424209 | 5_4:+11394964 | Msa0837420:CDS |
| ATGAAGCCCGTGGGCTCGAA+TGG | 0.428456 | 5_4:-11394778 | None:intergenic |
| TACTTTGCAAATTTCGGCCT+GGG | 0.429283 | 5_4:-11397486 | None:intergenic |
| TGAAGAAGGGTGCAAAATCT+TGG | 0.434378 | 5_4:-11396901 | None:intergenic |
| TGTTGTTGTTGATAATCTTA+GGG | 0.437061 | 5_4:+11394927 | Msa0837420:CDS |
| TCAACCAAAGGGTTGTGTAA+TGG | 0.437946 | 5_4:+11397177 | Msa0837420:CDS |
| CAGATTTATTGAGCTGAAGA+AGG | 0.440283 | 5_4:-11396915 | None:intergenic |
| ATCAGTTAGACCTGGCTGGC+TGG | 0.441531 | 5_4:+11397203 | Msa0837420:CDS |
| TAGTTGGCAAGCCAAATATA+TGG | 0.445296 | 5_4:-11397447 | None:intergenic |
| GGTGTTGGTTTGGTTGAGAG+TGG | 0.447403 | 5_4:-11394734 | None:intergenic |
| CGAGACATAGGGGATTATCT+TGG | 0.451200 | 5_4:-11394690 | None:intergenic |
| TGTTGGTTTGGTTGAGAGTG+GGG | 0.456506 | 5_4:-11394732 | None:intergenic |
| TGTTTCGTCGATACTTGGAT+TGG | 0.463509 | 5_4:+11394969 | Msa0837420:CDS |
| CCCAGCTGTTCCTCCGGAGC+GGG | 0.465744 | 5_4:+11397592 | Msa0837420:CDS |
| GTTGGTTTGGTTGAGAGTGG+GGG | 0.466278 | 5_4:-11394731 | None:intergenic |
| CACTACCACAAAGTGATCAT+TGG | 0.466967 | 5_4:-11397230 | None:intergenic |
| AGATTGAAGGTAAAGCGGGC+TGG | 0.467976 | 5_4:-11394830 | None:intergenic |
| TCCAGAAGCAATTAAGGTTG+TGG | 0.468811 | 5_4:-11397621 | None:intergenic |
| TAACTTGTTTCATATTGCAT+TGG | 0.471151 | 5_4:+11398233 | Msa0837420:three_prime_UTR |
| GATTGAAGGTAAAGCGGGCT+GGG | 0.472239 | 5_4:-11394829 | None:intergenic |
| CCAGAAGCAATTAAGGTTGT+GGG | 0.478234 | 5_4:-11397620 | None:intergenic |
| CGGTGGTTGTTGTTGTGCAA+CGG | 0.480438 | 5_4:-11394582 | None:intergenic |
| TTGTCCATTACACAACCCTT+TGG | 0.482073 | 5_4:-11397181 | None:intergenic |
| GAGACATAGGGGATTATCTT+GGG | 0.484053 | 5_4:-11394689 | None:intergenic |
| CATTGGACATCCAGCCAGCC+AGG | 0.484576 | 5_4:-11397213 | None:intergenic |
| TTACTTTGCAAATTTCGGCC+TGG | 0.486938 | 5_4:-11397487 | None:intergenic |
| AAGCAGGAGGACTGTAAAGT+TGG | 0.489113 | 5_4:-11397952 | None:intergenic |
| CCATGGGTTCAGGTTGTTGG+TGG | 0.491351 | 5_4:-11397883 | None:intergenic |
| TAGATTCAATGGATATTGAT+GGG | 0.494603 | 5_4:+11397849 | Msa0837420:CDS |
| TTACACCCCAGCTGTTCCTC+CGG | 0.495785 | 5_4:+11397586 | Msa0837420:CDS |
| CAATCGTCTAAGACAATGCC+TGG | 0.497496 | 5_4:+11398046 | Msa0837420:CDS |
| ACTGCTGAATAGCCGTGGAT+TGG | 0.500054 | 5_4:-11397766 | None:intergenic |
| AACCAAGGTTGATGCTATAG+AGG | 0.500976 | 5_4:+11397655 | Msa0837420:CDS |
| ATGTGGCACAAAAGGAAATC+GGG | 0.502560 | 5_4:+11396803 | Msa0837420:CDS |
| CTTGCGCCGCTGAACAGTAT+GGG | 0.505019 | 5_4:-11394558 | None:intergenic |
| TGAAGCCCGTGGGCTCGAAT+GGG | 0.505489 | 5_4:-11394777 | None:intergenic |
| TTCCGCAAGGTATCCCGAAA+AGG | 0.505591 | 5_4:-11394860 | None:intergenic |
| CAAGTTCAAGCTCTGTTATG+AGG | 0.516513 | 5_4:+11397975 | Msa0837420:CDS |
| TCAGCTCAATAAATCTGCTC+AGG | 0.517419 | 5_4:+11396921 | Msa0837420:CDS |
| GATTATCTTGGGCGCGCAGG+TGG | 0.519878 | 5_4:-11394678 | None:intergenic |
| GGTGGAAGATGTGGTGAGGA+TGG | 0.522042 | 5_4:-11394660 | None:intergenic |
| CACCTAAGAAACAAGCCAAA+TGG | 0.526886 | 5_4:-11398174 | None:intergenic |
| GGGGATTATCTTGGGCGCGC+AGG | 0.527359 | 5_4:-11394681 | None:intergenic |
| GATCTGGTGTGACGAGACAT+AGG | 0.527875 | 5_4:-11394702 | None:intergenic |
| GTGGAAGATGTGGTGAGGAT+GGG | 0.528792 | 5_4:-11394659 | None:intergenic |
| CCCGCTCCGGAGGAACAGCT+GGG | 0.534028 | 5_4:-11397592 | None:intergenic |
| AAAAGGAGAGGGAAGATTGA+AGG | 0.535379 | 5_4:-11394843 | None:intergenic |
| GTCACAAATGGTGCTGCTAT+CGG | 0.536044 | 5_4:+11397911 | Msa0837420:CDS |
| TCATAACCGCTTTCTCAACA+TGG | 0.537661 | 5_4:+11394797 | Msa0837420:CDS |
| ACAAATGCTTCTGCACTCGC+AGG | 0.542085 | 5_4:+11397399 | Msa0837420:CDS |
| TAAACCAAACAAACCTAATG+AGG | 0.542847 | 5_4:+11397715 | Msa0837420:CDS |
| CCATACTGTTCAGCGGCGCA+AGG | 0.542989 | 5_4:+11394559 | Msa0837420:CDS |
| GACAATCAGTTAGACCTGGC+TGG | 0.544709 | 5_4:+11397199 | Msa0837420:CDS |
| GTGGGAAATGCCCGCTCCGG+AGG | 0.547290 | 5_4:-11397602 | None:intergenic |
| TTTCAGTATTCTGGAAAACC+AGG | 0.547759 | 5_4:-11398064 | None:intergenic |
| GTTGTGGGAAATGCCCGCTC+CGG | 0.551336 | 5_4:-11397605 | None:intergenic |
| GGATTTCATTATTCAACTCA+AGG | 0.554136 | 5_4:+11398254 | Msa0837420:three_prime_UTR |
| CCCATGGTAGAGGTCACAAA+TGG | 0.556010 | 5_4:+11397899 | Msa0837420:CDS |
| ATCTGGTGTGACGAGACATA+GGG | 0.559207 | 5_4:-11394701 | None:intergenic |
| AGAAGACCCATTCGAGCCCA+CGG | 0.559374 | 5_4:+11394771 | Msa0837420:CDS |
| TGCAAGTGTCGAATATTTGG+AGG | 0.560033 | 5_4:-11398025 | None:intergenic |
| ACCATTTGTGACCTCTACCA+TGG | 0.561783 | 5_4:-11397900 | None:intergenic |
| ACAGAGCTTGAACTTGAAGC+AGG | 0.565561 | 5_4:-11397968 | None:intergenic |
| GGGAAGATTGAAGGTAAAGC+GGG | 0.566199 | 5_4:-11394834 | None:intergenic |
| CCCCAGCTGTTCCTCCGGAG+CGG | 0.571837 | 5_4:+11397591 | Msa0837420:CDS |
| ATATTTGGAGGAGCAGATGA+AGG | 0.572074 | 5_4:-11398013 | None:intergenic |
| AGATTTATTGAGCTGAAGAA+GGG | 0.572226 | 5_4:-11396914 | None:intergenic |
| CAGGAACTGGCTACTCACAT+AGG | 0.573292 | 5_4:+11397362 | Msa0837420:intron |
| TGCTCGTGCAAGCCAATCCA+CGG | 0.577093 | 5_4:+11397754 | Msa0837420:CDS |
| AGGAGGACTGTAAAGTTGGT+TGG | 0.579622 | 5_4:-11397948 | None:intergenic |
| ACAACCTGAACCCATGGTAG+AGG | 0.579624 | 5_4:+11397889 | Msa0837420:CDS |
| GGGAAATACATCAAGATACT+GGG | 0.584566 | 5_4:+11396823 | Msa0837420:CDS |
| CGTTGCACAACAACAACCAC+CGG | 0.589945 | 5_4:+11394583 | Msa0837420:CDS |
| AACCTCTATAGCATCAACCT+TGG | 0.590765 | 5_4:-11397657 | None:intergenic |
| CCACCAACAACCTGAACCCA+TGG | 0.593498 | 5_4:+11397883 | Msa0837420:CDS |
| GATGTCCAATGATCACTTTG+TGG | 0.593682 | 5_4:+11397225 | Msa0837420:CDS |
| CCATTTGTGACCTCTACCAT+GGG | 0.594086 | 5_4:-11397899 | None:intergenic |
| TGGACGTTCTTCAACAACCA+AGG | 0.599068 | 5_4:+11397640 | Msa0837420:CDS |
| GGGCGCGCAGGTGGAAGATG+TGG | 0.601302 | 5_4:-11394669 | None:intergenic |
| GAAGACCCATTCGAGCCCAC+GGG | 0.610171 | 5_4:+11394772 | Msa0837420:CDS |
| ACAGCTGGGGTGTAATTAGA+GGG | 0.610212 | 5_4:-11397578 | None:intergenic |
| CGTTGACTGCTGAATAGCCG+TGG | 0.614955 | 5_4:-11397771 | None:intergenic |
| CAAGGTATCCCGAAAAGGAG+AGG | 0.615007 | 5_4:-11394855 | None:intergenic |
| CTCAGATAAATGAAATGAGT+AGG | 0.617919 | 5_4:+11398114 | Msa0837420:three_prime_UTR |
| AAGGTATCCCGAAAAGGAGA+GGG | 0.619065 | 5_4:-11394854 | None:intergenic |
| ATCACAGAATGCACATCATG+CGG | 0.620104 | 5_4:+11394613 | Msa0837420:CDS |
| AGGTTAGAATATAACCTGAA+GGG | 0.624033 | 5_4:-11395127 | None:intergenic |
| AGAAGACAAACGCAAAACCC+AGG | 0.626006 | 5_4:+11397469 | Msa0837420:CDS |
| TAAGGACCATGTTGAGAAAG+CGG | 0.635021 | 5_4:-11394803 | None:intergenic |
| AGGGAAGATTGAAGGTAAAG+CGG | 0.636882 | 5_4:-11394835 | None:intergenic |
| GAGCTTGAACTTGAAGCAGG+AGG | 0.641001 | 5_4:-11397965 | None:intergenic |
| CGCAGGTGGAAGATGTGGTG+AGG | 0.641116 | 5_4:-11394664 | None:intergenic |
| AATTTCAATTGCCGCCAATG+TGG | 0.648364 | 5_4:+11396786 | Msa0837420:CDS |
| AGTGATGTTAGTAACATACA+AGG | 0.652580 | 5_4:-11398093 | None:intergenic |
| TTTGGAGGAGCAGATGAAGG+AGG | 0.658376 | 5_4:-11398010 | None:intergenic |
| CCGCTCCGGAGGAACAGCTG+GGG | 0.661546 | 5_4:-11397591 | None:intergenic |
| AAAGCGGTTATGAAGCCCGT+GGG | 0.662090 | 5_4:-11394787 | None:intergenic |
| AACAAACCTAATGAGGCCGA+AGG | 0.665876 | 5_4:+11397722 | Msa0837420:CDS |
| GAGTACGTTCAAGTTCCGCA+AGG | 0.674170 | 5_4:-11394873 | None:intergenic |
| TCTGGTGTGACGAGACATAG+GGG | 0.679597 | 5_4:-11394700 | None:intergenic |
| GAAAGCGGTTATGAAGCCCG+TGG | 0.684756 | 5_4:-11394788 | None:intergenic |
| AATGGACAATCAGTTAGACC+TGG | 0.692074 | 5_4:+11397195 | Msa0837420:CDS |
| GAAGTGCCCATACTGTTCAG+CGG | 0.702862 | 5_4:+11394552 | Msa0837420:CDS |
| TTGGCAAGCCAAATATATGG+CGG | 0.712362 | 5_4:-11397444 | None:intergenic |
| ATTGTCTTTCTTCTACGACG+CGG | 0.797371 | 5_4:-11394636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATGTTTTTTTTTTTTTTA+AGG | + | chr5_4:11398293-11398312 | Msa0837420:three_prime_UTR | 10.0% |
| !!! | TAATTTTTTTTTTGACAAAG+AGG | + | chr5_4:11395628-11395647 | Msa0837420:intron | 15.0% |
| !!! | CTTTTGTATTTGTAATATAA+AGG | - | chr5_4:11397315-11397334 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTAAAAGCTGAAT+TGG | + | chr5_4:11395543-11395562 | Msa0837420:intron | 20.0% |
| !! | TAATAGTCTAATATTGCAAA+TGG | + | chr5_4:11395840-11395859 | Msa0837420:intron | 20.0% |
| !!! | GTTAATATTGGACAATTTTT+CGG | + | chr5_4:11395988-11396007 | Msa0837420:intron | 20.0% |
| !!! | AAATAAGCTTTTTAGTAACT+GGG | - | chr5_4:11396063-11396082 | None:intergenic | 20.0% |
| !!! | AAAATAAGCTTTTTAGTAAC+TGG | - | chr5_4:11396064-11396083 | None:intergenic | 20.0% |
| !! | ATAAATAATAGAGGAAATGA+AGG | - | chr5_4:11396506-11396525 | None:intergenic | 20.0% |
| !! | ATGCTGAATATAAATAATAG+AGG | - | chr5_4:11396515-11396534 | None:intergenic | 20.0% |
| !!! | TATTTCATATAGCAGATTTT+TGG | + | chr5_4:11396608-11396627 | Msa0837420:intron | 20.0% |
| !!! | ATTTGCTATTGATAATACTT+TGG | + | chr5_4:11396650-11396669 | Msa0837420:intron | 20.0% |
| !!! | CAAGATTTTCAAACAAAATA+AGG | - | chr5_4:11396985-11397004 | None:intergenic | 20.0% |
| !! | TTTGTTTGAAAATCTTGAAA+CGG | + | chr5_4:11396988-11397007 | Msa0837420:intron | 20.0% |
| !! | ATCTATTACTAATTGTATCA+TGG | - | chr5_4:11397057-11397076 | None:intergenic | 20.0% |
| !!! | TTCTCTATGATTTTTCTATT+GGG | + | chr5_4:11397090-11397109 | Msa0837420:intron | 20.0% |
| !! | GTAATTCTTTATACACTTTA+CGG | - | chr5_4:11397535-11397554 | None:intergenic | 20.0% |
| !! | TAAAGTGTATAAAGAATTAC+TGG | + | chr5_4:11397535-11397554 | Msa0837420:CDS | 20.0% |
| !!! | TGTTGTTGTTGATAATCTTA+GGG | + | chr5_4:11394927-11394946 | Msa0837420:CDS | 25.0% |
| ! | AATTGAAAGGAGGAAAAAAA+AGG | - | chr5_4:11395150-11395169 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCTCCTTTCAAT+TGG | + | chr5_4:11395149-11395168 | Msa0837420:intron | 25.0% |
| ! | CAATCACATTTATCATCTTT+AGG | - | chr5_4:11395355-11395374 | None:intergenic | 25.0% |
| ! | GTTTAAAGATAAGTTCAATG+TGG | - | chr5_4:11395505-11395524 | None:intergenic | 25.0% |
| ! | TGAACTTATCTTTAAACATC+AGG | + | chr5_4:11395508-11395527 | Msa0837420:intron | 25.0% |
| ! | GATACCTATAATAAGTATCA+GGG | + | chr5_4:11395565-11395584 | Msa0837420:intron | 25.0% |
| ! | ATTTGATATGATGTAAGCAT+TGG | + | chr5_4:11395656-11395675 | Msa0837420:intron | 25.0% |
| ! | AAAATACCATTACCATATCA+TGG | + | chr5_4:11395809-11395828 | Msa0837420:intron | 25.0% |
| !!! | CTTATTTTTGTCGATGAAAA+TGG | + | chr5_4:11396076-11396095 | Msa0837420:intron | 25.0% |
| ! | TTGAATGAATGCTCATAATT+GGG | - | chr5_4:11396111-11396130 | None:intergenic | 25.0% |
| ! | ACTGAAATTCAAAATCCTTA+AGG | - | chr5_4:11396375-11396394 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTATGCACATGTA+TGG | + | chr5_4:11396429-11396448 | Msa0837420:intron | 25.0% |
| ! | GCATAGGTTATATAAATCAT+TGG | - | chr5_4:11396479-11396498 | None:intergenic | 25.0% |
| ! | GTATTATCAATAGCAAATTG+TGG | - | chr5_4:11396648-11396667 | None:intergenic | 25.0% |
| !! | TCAATATCGAGATTTTACTT+GGG | - | chr5_4:11396732-11396751 | None:intergenic | 25.0% |
| ! | TTTCACAAGAGTTACAAATA+CGG | - | chr5_4:11396758-11396777 | None:intergenic | 25.0% |
| !! | GATATAGAATTGCTGTTAAT+AGG | - | chr5_4:11396871-11396890 | None:intergenic | 25.0% |
| !!! | CAGATTCTGTTTTTACTTTA+TGG | - | chr5_4:11397025-11397044 | None:intergenic | 25.0% |
| !! | CTTCTCTATGATTTTTCTAT+TGG | + | chr5_4:11397089-11397108 | Msa0837420:intron | 25.0% |
| !! | TCTCTATGATTTTTCTATTG+GGG | + | chr5_4:11397091-11397110 | Msa0837420:intron | 25.0% |
| !! | TCCCTAAAATAACTTTTCTT+AGG | + | chr5_4:11397269-11397288 | Msa0837420:intron | 25.0% |
| !!! | CCCTAAGAAAAGTTATTTTA+GGG | - | chr5_4:11397273-11397292 | None:intergenic | 25.0% |
| !! | CCCTAAAATAACTTTTCTTA+GGG | + | chr5_4:11397270-11397289 | Msa0837420:intron | 25.0% |
| !!! | ACCCTAAGAAAAGTTATTTT+AGG | - | chr5_4:11397274-11397293 | None:intergenic | 25.0% |
| ! | ATAAAGAATTACTGGAGAAT+TGG | + | chr5_4:11397543-11397562 | Msa0837420:CDS | 25.0% |
| ! | TAAAGAATTACTGGAGAATT+GGG | + | chr5_4:11397544-11397563 | Msa0837420:CDS | 25.0% |
| !!! | ATTCGGATTTTGATGATTTT+GGG | - | chr5_4:11397825-11397844 | None:intergenic | 25.0% |
| !! | TCCATTGAATCTAAAACATT+CGG | - | chr5_4:11397842-11397861 | None:intergenic | 25.0% |
| ! | TTAGATTCAATGGATATTGA+TGG | + | chr5_4:11397848-11397867 | Msa0837420:CDS | 25.0% |
| ! | TAGATTCAATGGATATTGAT+GGG | + | chr5_4:11397849-11397868 | Msa0837420:CDS | 25.0% |
| !! | TATATATGTATTGTGCCATT+TGG | + | chr5_4:11398159-11398178 | Msa0837420:three_prime_UTR | 25.0% |
| !!! | TAACTTGTTTCATATTGCAT+TGG | + | chr5_4:11398233-11398252 | Msa0837420:three_prime_UTR | 25.0% |
| !! | GTGTTGTTGTTGATAATCTT+AGG | + | chr5_4:11394926-11394945 | Msa0837420:CDS | 30.0% |
| ! | ATCATGCTTTTCAGTTGTTT+AGG | + | chr5_4:11395007-11395026 | Msa0837420:CDS | 30.0% |
| ! | TCATGCTTTTCAGTTGTTTA+GGG | + | chr5_4:11395008-11395027 | Msa0837420:CDS | 30.0% |
| AGGTTAGAATATAACCTGAA+GGG | - | chr5_4:11395130-11395149 | None:intergenic | 30.0% | |
| AAGGTTAGAATATAACCTGA+AGG | - | chr5_4:11395131-11395150 | None:intergenic | 30.0% | |
| AAGTTTAACCAATTGAAAGG+AGG | - | chr5_4:11395160-11395179 | None:intergenic | 30.0% | |
| CCTAAGTTTAACCAATTGAA+AGG | - | chr5_4:11395163-11395182 | None:intergenic | 30.0% | |
| CCTTTCAATTGGTTAAACTT+AGG | + | chr5_4:11395160-11395179 | Msa0837420:intron | 30.0% | |
| CACATACTAGCTAATATGTT+CGG | - | chr5_4:11395279-11395298 | None:intergenic | 30.0% | |
| TTATCTTTAAACATCAGGAC+TGG | + | chr5_4:11395513-11395532 | Msa0837420:intron | 30.0% | |
| TATCTTTAAACATCAGGACT+GGG | + | chr5_4:11395514-11395533 | Msa0837420:intron | 30.0% | |
| GGATACCTATAATAAGTATC+AGG | + | chr5_4:11395564-11395583 | Msa0837420:intron | 30.0% | |
| ATTAGAAACGATCCATGATA+TGG | - | chr5_4:11395824-11395843 | None:intergenic | 30.0% | |
| ! | AGTCTTGTAAGTGATTTAGT+TGG | + | chr5_4:11395941-11395960 | Msa0837420:intron | 30.0% |
| GTTGAATGAATGCTCATAAT+TGG | - | chr5_4:11396112-11396131 | None:intergenic | 30.0% | |
| CGATAAATAGGCAAATAGAA+AGG | - | chr5_4:11396278-11396297 | None:intergenic | 30.0% | |
| AAAACTAAGCAGCGATAAAT+AGG | - | chr5_4:11396290-11396309 | None:intergenic | 30.0% | |
| !! | GTCTTATTTCAATTGCTATG+TGG | + | chr5_4:11396555-11396574 | Msa0837420:intron | 30.0% |
| CTATATGAAATAGCAGATAG+TGG | - | chr5_4:11396600-11396619 | None:intergenic | 30.0% | |
| TGGATCTTACAATTCATGTT+AGG | + | chr5_4:11396670-11396689 | Msa0837420:intron | 30.0% | |
| ! | GAGAAAAGCCTGTAAATTTT+GGG | - | chr5_4:11396698-11396717 | None:intergenic | 30.0% |
| ! | ATTTTACTTGGGATCACAAA+GGG | - | chr5_4:11396721-11396740 | None:intergenic | 30.0% |
| ! | GTCAATATCGAGATTTTACT+TGG | - | chr5_4:11396733-11396752 | None:intergenic | 30.0% |
| AGATTTATTGAGCTGAAGAA+GGG | - | chr5_4:11396917-11396936 | None:intergenic | 30.0% | |
| !! | TAACTCTAGAAGTCACATTT+TGG | - | chr5_4:11396961-11396980 | None:intergenic | 30.0% |
| ! | TTTGTTCTTTTCTCAACCAA+AGG | + | chr5_4:11397165-11397184 | Msa0837420:CDS | 30.0% |
| ! | TTGTTCTTTTCTCAACCAAA+GGG | + | chr5_4:11397166-11397185 | Msa0837420:CDS | 30.0% |
| CAAATACAAAAGTCTGAGAA+TGG | + | chr5_4:11397323-11397342 | Msa0837420:intron | 30.0% | |
| ! | ACCAGTTACTTTGCAAATTT+CGG | - | chr5_4:11397495-11397514 | None:intergenic | 30.0% |
| TATAGAGGTTACTTCTTCTT+TGG | + | chr5_4:11397670-11397689 | Msa0837420:CDS | 30.0% | |
| TTTGGATTCAGAAAATTTGC+CGG | + | chr5_4:11397688-11397707 | Msa0837420:CDS | 30.0% | |
| ! | GGTTTGTTTGGTTTAAATTC+CGG | - | chr5_4:11397710-11397729 | None:intergenic | 30.0% |
| TAAACCAAACAAACCTAATG+AGG | + | chr5_4:11397715-11397734 | Msa0837420:CDS | 30.0% | |
| !! | CATTCGGATTTTGATGATTT+TGG | - | chr5_4:11397826-11397845 | None:intergenic | 30.0% |
| !! | TCCGAATGTTTTAGATTCAA+TGG | + | chr5_4:11397838-11397857 | Msa0837420:CDS | 30.0% |
| AGGAATTCATTTCAGTATTC+TGG | - | chr5_4:11398076-11398095 | None:intergenic | 30.0% | |
| AGTGATGTTAGTAACATACA+AGG | - | chr5_4:11398096-11398115 | None:intergenic | 30.0% | |
| CTCAGATAAATGAAATGAGT+AGG | + | chr5_4:11398114-11398133 | Msa0837420:three_prime_UTR | 30.0% | |
| TGAAATGAGTAGGTTTCTTA+AGG | + | chr5_4:11398124-11398143 | Msa0837420:three_prime_UTR | 30.0% | |
| GGATTTCATTATTCAACTCA+AGG | + | chr5_4:11398254-11398273 | Msa0837420:three_prime_UTR | 30.0% | |
| TTCTCTGTACTTGTGTTCAA+TGG | - | chr5_4:11394516-11394535 | None:intergenic | 35.0% | |
| !! | GCATTCTGTGATTGATTTTC+CGG | - | chr5_4:11394605-11394624 | None:intergenic | 35.0% |
| ATAGATGTTTCGTCGATACT+TGG | + | chr5_4:11394964-11394983 | Msa0837420:CDS | 35.0% | |
| ! | CTGCTACTTGTTTGAGAAAT+CGG | + | chr5_4:11395040-11395059 | Msa0837420:CDS | 35.0% |
| AATATAACCTGAAGGGTTCT+AGG | - | chr5_4:11395123-11395142 | None:intergenic | 35.0% | |
| CTTAATTCTACAAGCTAGAC+AGG | - | chr5_4:11395256-11395275 | None:intergenic | 35.0% | |
| ! | GCTAGTATGTGATTTTCGTT+AGG | + | chr5_4:11395288-11395307 | Msa0837420:intron | 35.0% |
| ! | ACTTTTATCTCTCAAGCCAA+AGG | + | chr5_4:11395445-11395464 | Msa0837420:intron | 35.0% |
| ACACTACTCTTTGAATCCTT+TGG | - | chr5_4:11395464-11395483 | None:intergenic | 35.0% | |
| GAGTAGTGTGTTTAGATCTT+AGG | + | chr5_4:11395475-11395494 | Msa0837420:intron | 35.0% | |
| GCTTCCCTGATACTTATTAT+AGG | - | chr5_4:11395572-11395591 | None:intergenic | 35.0% | |
| AATGTGAACTCATTCTTCTG+TGG | + | chr5_4:11395693-11395712 | Msa0837420:intron | 35.0% | |
| ACTTCATAAATCCCTAGAAG+TGG | - | chr5_4:11395720-11395739 | None:intergenic | 35.0% | |
| AACGATCCATGATATGGTAA+TGG | - | chr5_4:11395818-11395837 | None:intergenic | 35.0% | |
| TCACTTACAAGACTGTGATA+TGG | - | chr5_4:11395935-11395954 | None:intergenic | 35.0% | |
| GCACGTAGAATCGTTAATAT+TGG | + | chr5_4:11395976-11395995 | Msa0837420:intron | 35.0% | |
| !! | ACAATTTTTCGGCAATCCTA+GGG | + | chr5_4:11395999-11396018 | Msa0837420:intron | 35.0% |
| ACAGCAAGGAGAAATATGTT+TGG | - | chr5_4:11396134-11396153 | None:intergenic | 35.0% | |
| ATGAGTTGTGTATGACCTTA+AGG | + | chr5_4:11396357-11396376 | Msa0837420:intron | 35.0% | |
| !!! | TGCTGAAGTGTTTTTTGTGA+TGG | + | chr5_4:11396396-11396415 | Msa0837420:intron | 35.0% |
| GTTAGGATCCCAAAATTTAC+AGG | + | chr5_4:11396687-11396706 | Msa0837420:intron | 35.0% | |
| ! | GGAGAAAAGCCTGTAAATTT+TGG | - | chr5_4:11396699-11396718 | None:intergenic | 35.0% |
| ! | TTTTACTTGGGATCACAAAG+GGG | - | chr5_4:11396720-11396739 | None:intergenic | 35.0% |
| ! | GATTTTACTTGGGATCACAA+AGG | - | chr5_4:11396722-11396741 | None:intergenic | 35.0% |
| TGTAACTCTTGTGAAATGAC+AGG | + | chr5_4:11396762-11396781 | Msa0837420:intron | 35.0% | |
| AATGTGGCACAAAAGGAAAT+CGG | + | chr5_4:11396802-11396821 | Msa0837420:CDS | 35.0% | |
| GGGAAATACATCAAGATACT+GGG | + | chr5_4:11396823-11396842 | Msa0837420:CDS | 35.0% | |
| CAGATTTATTGAGCTGAAGA+AGG | - | chr5_4:11396918-11396937 | None:intergenic | 35.0% | |
| !! | ATATCTGCTCTGCTTTTACA+AGG | + | chr5_4:11397120-11397139 | Msa0837420:intron | 35.0% |
| TAGTTGGCAAGCCAAATATA+TGG | - | chr5_4:11397450-11397469 | None:intergenic | 35.0% | |
| ! | TTTTGCGTTTGTCTTCTAGT+TGG | - | chr5_4:11397466-11397485 | None:intergenic | 35.0% |
| !! | ACGAGCATTACTTTTACCTT+CGG | - | chr5_4:11397741-11397760 | None:intergenic | 35.0% |
| !! | GATTGCAAGTGTCGAATATT+TGG | - | chr5_4:11398031-11398050 | None:intergenic | 35.0% |
| ! | TTTCAGTATTCTGGAAAACC+AGG | - | chr5_4:11398067-11398086 | None:intergenic | 35.0% |
| !! | TTCTGTGATTGATTTTCCGG+TGG | - | chr5_4:11394602-11394621 | None:intergenic | 40.0% |
| ATCACAGAATGCACATCATG+CGG | + | chr5_4:11394613-11394632 | Msa0837420:CDS | 40.0% | |
| ATTGTCTTTCTTCTACGACG+CGG | - | chr5_4:11394639-11394658 | None:intergenic | 40.0% | |
| GAGACATAGGGGATTATCTT+GGG | - | chr5_4:11394692-11394711 | None:intergenic | 40.0% | |
| !! | GTCTTCTTCTTCGTTGGTTT+CGG | - | chr5_4:11394758-11394777 | None:intergenic | 40.0% |
| TCATAACCGCTTTCTCAACA+TGG | + | chr5_4:11394797-11394816 | Msa0837420:CDS | 40.0% | |
| TAAGGACCATGTTGAGAAAG+CGG | - | chr5_4:11394806-11394825 | None:intergenic | 40.0% | |
| AGGGAAGATTGAAGGTAAAG+CGG | - | chr5_4:11394838-11394857 | None:intergenic | 40.0% | |
| AAAAGGAGAGGGAAGATTGA+AGG | - | chr5_4:11394846-11394865 | None:intergenic | 40.0% | |
| ! | TCAATCTTCCCTCTCCTTTT+CGG | + | chr5_4:11394846-11394865 | Msa0837420:CDS | 40.0% |
| TGTTTCGTCGATACTTGGAT+TGG | + | chr5_4:11394969-11394988 | Msa0837420:CDS | 40.0% | |
| CGTATCTAATGCCGATACTT+TGG | - | chr5_4:11395597-11395616 | None:intergenic | 40.0% | |
| !! | AAGTATCGGCATTAGATACG+AGG | + | chr5_4:11395597-11395616 | Msa0837420:intron | 40.0% |
| ! | ACTGTGATATGGATTGCAAG+GGG | - | chr5_4:11395924-11395943 | None:intergenic | 40.0% |
| ! | GACTGTGATATGGATTGCAA+GGG | - | chr5_4:11395925-11395944 | None:intergenic | 40.0% |
| ! | AGACTGTGATATGGATTGCA+AGG | - | chr5_4:11395926-11395945 | None:intergenic | 40.0% |
| !! | GACAATTTTTCGGCAATCCT+AGG | + | chr5_4:11395998-11396017 | Msa0837420:intron | 40.0% |
| ACCACTCGTATTCTTGGATT+AGG | + | chr5_4:11396029-11396048 | Msa0837420:intron | 40.0% | |
| ACCTAATCCAAGAATACGAG+TGG | - | chr5_4:11396033-11396052 | None:intergenic | 40.0% | |
| GAATGCTCATAATTGGGCAA+GGG | - | chr5_4:11396105-11396124 | None:intergenic | 40.0% | |
| TGAATGCTCATAATTGGGCA+AGG | - | chr5_4:11396106-11396125 | None:intergenic | 40.0% | |
| AAGAGAGAGATGCATGAGAA+GGG | - | chr5_4:11396159-11396178 | None:intergenic | 40.0% | |
| ! | AGGGAGAGTGTGTAAGATAA+AGG | - | chr5_4:11396212-11396231 | None:intergenic | 40.0% |
| CCAAGTAGGAGAAGAGAAAA+GGG | - | chr5_4:11396231-11396250 | None:intergenic | 40.0% | |
| ACCAAGTAGGAGAAGAGAAA+AGG | - | chr5_4:11396232-11396251 | None:intergenic | 40.0% | |
| ! | TGAAATAGCAGATAGTGGTG+CGG | - | chr5_4:11396595-11396614 | None:intergenic | 40.0% |
| AATTTCAATTGCCGCCAATG+TGG | + | chr5_4:11396786-11396805 | Msa0837420:CDS | 40.0% | |
| ! | GATTTCCTTTTGTGCCACAT+TGG | - | chr5_4:11396803-11396822 | None:intergenic | 40.0% |
| ATGTGGCACAAAAGGAAATC+GGG | + | chr5_4:11396803-11396822 | Msa0837420:CDS | 40.0% | |
| CGGGAAATACATCAAGATAC+TGG | + | chr5_4:11396822-11396841 | Msa0837420:CDS | 40.0% | |
| ! | TGAAGAAGGGTGCAAAATCT+TGG | - | chr5_4:11396904-11396923 | None:intergenic | 40.0% |
| TCAGCTCAATAAATCTGCTC+AGG | + | chr5_4:11396921-11396940 | Msa0837420:CDS | 40.0% | |
| AATAAATCTGCTCAGGTACC+TGG | + | chr5_4:11396928-11396947 | Msa0837420:intron | 40.0% | |
| !! | TCACATTTTGGTGCAATTCC+AGG | - | chr5_4:11396949-11396968 | None:intergenic | 40.0% |
| GTAAAAGCAGAGCAGATATG+CGG | - | chr5_4:11397119-11397138 | None:intergenic | 40.0% | |
| TCAACCAAAGGGTTGTGTAA+TGG | + | chr5_4:11397177-11397196 | Msa0837420:CDS | 40.0% | |
| TTGTCCATTACACAACCCTT+TGG | - | chr5_4:11397184-11397203 | None:intergenic | 40.0% | |
| AATGGACAATCAGTTAGACC+TGG | + | chr5_4:11397195-11397214 | Msa0837420:CDS | 40.0% | |
| GATGTCCAATGATCACTTTG+TGG | + | chr5_4:11397225-11397244 | Msa0837420:CDS | 40.0% | |
| CACTACCACAAAGTGATCAT+TGG | - | chr5_4:11397233-11397252 | None:intergenic | 40.0% | |
| CAGTTCCTGAAATGCAATGT+AGG | - | chr5_4:11397351-11397370 | None:intergenic | 40.0% | |
| CTACATTGCATTTCAGGAAC+TGG | + | chr5_4:11397349-11397368 | Msa0837420:intron | 40.0% | |
| TTGGCAAGCCAAATATATGG+CGG | - | chr5_4:11397447-11397466 | None:intergenic | 40.0% | |
| TACTTTGCAAATTTCGGCCT+GGG | - | chr5_4:11397489-11397508 | None:intergenic | 40.0% | |
| TTACTTTGCAAATTTCGGCC+TGG | - | chr5_4:11397490-11397509 | None:intergenic | 40.0% | |
| GCCGAAATTTGCAAAGTAAC+TGG | + | chr5_4:11397491-11397510 | Msa0837420:CDS | 40.0% | |
| CCAGAAGCAATTAAGGTTGT+GGG | - | chr5_4:11397623-11397642 | None:intergenic | 40.0% | |
| TCCAGAAGCAATTAAGGTTG+TGG | - | chr5_4:11397624-11397643 | None:intergenic | 40.0% | |
| AGAACGTCCAGAAGCAATTA+AGG | - | chr5_4:11397630-11397649 | None:intergenic | 40.0% | |
| !! | AACCAAGGTTGATGCTATAG+AGG | + | chr5_4:11397655-11397674 | Msa0837420:CDS | 40.0% |
| AACCTCTATAGCATCAACCT+TGG | - | chr5_4:11397660-11397679 | None:intergenic | 40.0% | |
| ! | CTATTCAGCAGTCAACGTTT+TGG | + | chr5_4:11397777-11397796 | Msa0837420:CDS | 40.0% |
| CAAGTTCAAGCTCTGTTATG+AGG | + | chr5_4:11397975-11397994 | Msa0837420:CDS | 40.0% | |
| ATATTTGGAGGAGCAGATGA+AGG | - | chr5_4:11398016-11398035 | None:intergenic | 40.0% | |
| !! | TGCAAGTGTCGAATATTTGG+AGG | - | chr5_4:11398028-11398047 | None:intergenic | 40.0% |
| !! | TGCCATTTGGCTTGTTTCTT+AGG | + | chr5_4:11398172-11398191 | Msa0837420:three_prime_UTR | 40.0% |
| CACCTAAGAAACAAGCCAAA+TGG | - | chr5_4:11398177-11398196 | None:intergenic | 40.0% | |
| !! | GTGTGAATTTTGTTGACTGC+TGG | + | chr5_4:11398194-11398213 | Msa0837420:three_prime_UTR | 40.0% |
| CGAGACATAGGGGATTATCT+TGG | - | chr5_4:11394693-11394712 | None:intergenic | 45.0% | |
| ATCTGGTGTGACGAGACATA+GGG | - | chr5_4:11394704-11394723 | None:intergenic | 45.0% | |
| !! | TGTTGGTTTGGTTGAGAGTG+GGG | - | chr5_4:11394735-11394754 | None:intergenic | 45.0% |
| !! | GTGTTGGTTTGGTTGAGAGT+GGG | - | chr5_4:11394736-11394755 | None:intergenic | 45.0% |
| !! | TTCTTCGTTGGTTTCGGTGT+TGG | - | chr5_4:11394752-11394771 | None:intergenic | 45.0% |
| GAATGGGTCTTCTTCTTCGT+TGG | - | chr5_4:11394764-11394783 | None:intergenic | 45.0% | |
| GGGAAGATTGAAGGTAAAGC+GGG | - | chr5_4:11394837-11394856 | None:intergenic | 45.0% | |
| ! | CAATCTTCCCTCTCCTTTTC+GGG | + | chr5_4:11394847-11394866 | Msa0837420:CDS | 45.0% |
| ! | AAGGTATCCCGAAAAGGAGA+GGG | - | chr5_4:11394857-11394876 | None:intergenic | 45.0% |
| TCAAGAACCTAGAACCCTTC+AGG | + | chr5_4:11395113-11395132 | Msa0837420:CDS | 45.0% | |
| !! | CAGGGAAGCATCCAAAGTAT+CGG | + | chr5_4:11395583-11395602 | Msa0837420:intron | 45.0% |
| TTCTTCTGTGGTCCACTTCT+AGG | + | chr5_4:11395705-11395724 | Msa0837420:intron | 45.0% | |
| TCTTCTGTGGTCCACTTCTA+GGG | + | chr5_4:11395706-11395725 | Msa0837420:intron | 45.0% | |
| TGCTGCTCGTCTACATAGTT+GGG | - | chr5_4:11395752-11395771 | None:intergenic | 45.0% | |
| ATGCTGCTCGTCTACATAGT+TGG | - | chr5_4:11395753-11395772 | None:intergenic | 45.0% | |
| TCGATCACCACTCGTATTCT+TGG | + | chr5_4:11396023-11396042 | Msa0837420:intron | 45.0% | |
| CAAGAGAGAGATGCATGAGA+AGG | - | chr5_4:11396160-11396179 | None:intergenic | 45.0% | |
| AAAGGAAATGCGTGCAAGAG+AGG | - | chr5_4:11396194-11396213 | None:intergenic | 45.0% | |
| ! | CCCTTTTCTCTTCTCCTACT+TGG | + | chr5_4:11396228-11396247 | Msa0837420:intron | 45.0% |
| TGTCAGAGAGAACACCAAGT+AGG | - | chr5_4:11396245-11396264 | None:intergenic | 45.0% | |
| AGGAAATGAAGGCAGAGCAT+AGG | - | chr5_4:11396495-11396514 | None:intergenic | 45.0% | |
| ! | GAAATAGCAGATAGTGGTGC+GGG | - | chr5_4:11396594-11396613 | None:intergenic | 45.0% |
| ! | TTCCTTTTGTGCCACATTGG+CGG | - | chr5_4:11396800-11396819 | None:intergenic | 45.0% |
| TGGCTCCTACATTGCATTTC+AGG | + | chr5_4:11397343-11397362 | Msa0837420:intron | 45.0% | |
| AGAAGACAAACGCAAAACCC+AGG | + | chr5_4:11397469-11397488 | Msa0837420:CDS | 45.0% | |
| ACAGCTGGGGTGTAATTAGA+GGG | - | chr5_4:11397581-11397600 | None:intergenic | 45.0% | |
| AACAGCTGGGGTGTAATTAG+AGG | - | chr5_4:11397582-11397601 | None:intergenic | 45.0% | |
| CCCACAACCTTAATTGCTTC+TGG | + | chr5_4:11397620-11397639 | Msa0837420:CDS | 45.0% | |
| TGGACGTTCTTCAACAACCA+AGG | + | chr5_4:11397640-11397659 | Msa0837420:CDS | 45.0% | |
| ! | TCGGCCTCATTAGGTTTGTT+TGG | - | chr5_4:11397722-11397741 | None:intergenic | 45.0% |
| AACAAACCTAATGAGGCCGA+AGG | + | chr5_4:11397722-11397741 | Msa0837420:CDS | 45.0% | |
| ! | CTTTTACCTTCGGCCTCATT+AGG | - | chr5_4:11397731-11397750 | None:intergenic | 45.0% |
| !! | TGATGATTTTGGGTCGCACT+GGG | - | chr5_4:11397815-11397834 | None:intergenic | 45.0% |
| !! | TTGATGATTTTGGGTCGCAC+TGG | - | chr5_4:11397816-11397835 | None:intergenic | 45.0% |
| CCATTTGTGACCTCTACCAT+GGG | - | chr5_4:11397902-11397921 | None:intergenic | 45.0% | |
| ACCATTTGTGACCTCTACCA+TGG | - | chr5_4:11397903-11397922 | None:intergenic | 45.0% | |
| !! | GTCACAAATGGTGCTGCTAT+CGG | + | chr5_4:11397911-11397930 | Msa0837420:CDS | 45.0% |
| ! | AGGAGGACTGTAAAGTTGGT+TGG | - | chr5_4:11397951-11397970 | None:intergenic | 45.0% |
| AAGCAGGAGGACTGTAAAGT+TGG | - | chr5_4:11397955-11397974 | None:intergenic | 45.0% | |
| ACAGAGCTTGAACTTGAAGC+AGG | - | chr5_4:11397971-11397990 | None:intergenic | 45.0% | |
| ! | CTCTGTTATGAGGTCGCTTT+CGG | + | chr5_4:11397985-11398004 | Msa0837420:CDS | 45.0% |
| ! | CAATCGTCTAAGACAATGCC+TGG | + | chr5_4:11398046-11398065 | Msa0837420:CDS | 45.0% |
| ! | GAAGTGCCCATACTGTTCAG+CGG | + | chr5_4:11394552-11394571 | Msa0837420:CDS | 50.0% |
| ! | CGGTGGTTGTTGTTGTGCAA+CGG | - | chr5_4:11394585-11394604 | None:intergenic | 50.0% |
| CGTTGCACAACAACAACCAC+CGG | + | chr5_4:11394583-11394602 | Msa0837420:CDS | 50.0% | |
| GTGGAAGATGTGGTGAGGAT+GGG | - | chr5_4:11394662-11394681 | None:intergenic | 50.0% | |
| TCTGGTGTGACGAGACATAG+GGG | - | chr5_4:11394703-11394722 | None:intergenic | 50.0% | |
| GATCTGGTGTGACGAGACAT+AGG | - | chr5_4:11394705-11394724 | None:intergenic | 50.0% | |
| !! | TTGGTTTGGTTGAGAGTGGG+GGG | - | chr5_4:11394733-11394752 | None:intergenic | 50.0% |
| !! | GTTGGTTTGGTTGAGAGTGG+GGG | - | chr5_4:11394734-11394753 | None:intergenic | 50.0% |
| !! | GGTGTTGGTTTGGTTGAGAG+TGG | - | chr5_4:11394737-11394756 | None:intergenic | 50.0% |
| !! | CGTTGGTTTCGGTGTTGGTT+TGG | - | chr5_4:11394747-11394766 | None:intergenic | 50.0% |
| AAAGCGGTTATGAAGCCCGT+GGG | - | chr5_4:11394790-11394809 | None:intergenic | 50.0% | |
| ! | GATTGAAGGTAAAGCGGGCT+GGG | - | chr5_4:11394832-11394851 | None:intergenic | 50.0% |
| AGATTGAAGGTAAAGCGGGC+TGG | - | chr5_4:11394833-11394852 | None:intergenic | 50.0% | |
| ! | CAAGGTATCCCGAAAAGGAG+AGG | - | chr5_4:11394858-11394877 | None:intergenic | 50.0% |
| !! | CTCCTTTTCGGGATACCTTG+CGG | + | chr5_4:11394858-11394877 | Msa0837420:CDS | 50.0% |
| ! | TTCCGCAAGGTATCCCGAAA+AGG | - | chr5_4:11394863-11394882 | None:intergenic | 50.0% |
| ! | GAGTACGTTCAAGTTCCGCA+AGG | - | chr5_4:11394876-11394895 | None:intergenic | 50.0% |
| TGCTACTGCTGCTCTTGTTC+AGG | + | chr5_4:11395077-11395096 | Msa0837420:CDS | 50.0% | |
| GCTGCTCGTCTACATAGTTG+GGG | - | chr5_4:11395751-11395770 | None:intergenic | 50.0% | |
| GACAATCAGTTAGACCTGGC+TGG | + | chr5_4:11397199-11397218 | Msa0837420:CDS | 50.0% | |
| CAGGAACTGGCTACTCACAT+AGG | + | chr5_4:11397362-11397381 | Msa0837420:intron | 50.0% | |
| ACAAATGCTTCTGCACTCGC+AGG | + | chr5_4:11397399-11397418 | Msa0837420:CDS | 50.0% | |
| CTCAGCTGCCGCCATATATT+TGG | + | chr5_4:11397436-11397455 | Msa0837420:CDS | 50.0% | |
| ACTGCTGAATAGCCGTGGAT+TGG | - | chr5_4:11397769-11397788 | None:intergenic | 50.0% | |
| !! | CTACCATGGGTTCAGGTTGT+TGG | - | chr5_4:11397889-11397908 | None:intergenic | 50.0% |
| ACAACCTGAACCCATGGTAG+AGG | + | chr5_4:11397889-11397908 | Msa0837420:CDS | 50.0% | |
| CCCATGGTAGAGGTCACAAA+TGG | + | chr5_4:11397899-11397918 | Msa0837420:CDS | 50.0% | |
| GAGCTTGAACTTGAAGCAGG+AGG | - | chr5_4:11397968-11397987 | None:intergenic | 50.0% | |
| TTTGGAGGAGCAGATGAAGG+AGG | - | chr5_4:11398013-11398032 | None:intergenic | 50.0% | |
| CTTGCGCCGCTGAACAGTAT+GGG | - | chr5_4:11394561-11394580 | None:intergenic | 55.0% | |
| GGTGGAAGATGTGGTGAGGA+TGG | - | chr5_4:11394663-11394682 | None:intergenic | 55.0% | |
| TTTGGTTGAGAGTGGGGGGA+GGG | - | chr5_4:11394729-11394748 | None:intergenic | 55.0% | |
| AGAAGACCCATTCGAGCCCA+CGG | + | chr5_4:11394771-11394790 | Msa0837420:CDS | 55.0% | |
| GAAAGCGGTTATGAAGCCCG+TGG | - | chr5_4:11394791-11394810 | None:intergenic | 55.0% | |
| GCATGAGAAGGGAGACAGCA+AGG | - | chr5_4:11396148-11396167 | None:intergenic | 55.0% | |
| GGAAATGCGTGCAAGAGAGG+AGG | - | chr5_4:11396191-11396210 | None:intergenic | 55.0% | |
| TGCCGCCAATGTGGCACAAA+AGG | + | chr5_4:11396795-11396814 | Msa0837420:CDS | 55.0% | |
| ATCAGTTAGACCTGGCTGGC+TGG | + | chr5_4:11397203-11397222 | Msa0837420:CDS | 55.0% | |
| GCGGCAGCTGAGATGCTAAT+TGG | - | chr5_4:11397428-11397447 | None:intergenic | 55.0% | |
| TTACACCCCAGCTGTTCCTC+CGG | + | chr5_4:11397586-11397605 | Msa0837420:CDS | 55.0% | |
| TGCTCGTGCAAGCCAATCCA+CGG | + | chr5_4:11397754-11397773 | Msa0837420:CDS | 55.0% | |
| ! | CGTTGACTGCTGAATAGCCG+TGG | - | chr5_4:11397774-11397793 | None:intergenic | 55.0% |
| TTGGGTCGCACTGGGAAGTT+GGG | - | chr5_4:11397807-11397826 | None:intergenic | 55.0% | |
| TTTGGGTCGCACTGGGAAGT+TGG | - | chr5_4:11397808-11397827 | None:intergenic | 55.0% | |
| !! | CCATGGGTTCAGGTTGTTGG+TGG | - | chr5_4:11397886-11397905 | None:intergenic | 55.0% |
| CCACCAACAACCTGAACCCA+TGG | + | chr5_4:11397883-11397902 | Msa0837420:CDS | 55.0% | |
| GTGACCTCTACCATGGGTTC+AGG | - | chr5_4:11397896-11397915 | None:intergenic | 55.0% | |
| CCTTGCGCCGCTGAACAGTA+TGG | - | chr5_4:11394562-11394581 | None:intergenic | 60.0% | |
| CCATACTGTTCAGCGGCGCA+AGG | + | chr5_4:11394559-11394578 | Msa0837420:CDS | 60.0% | |
| CGCAGGTGGAAGATGTGGTG+AGG | - | chr5_4:11394667-11394686 | None:intergenic | 60.0% | |
| GATTATCTTGGGCGCGCAGG+TGG | - | chr5_4:11394681-11394700 | None:intergenic | 60.0% | |
| GTTTGGTTGAGAGTGGGGGG+AGG | - | chr5_4:11394730-11394749 | None:intergenic | 60.0% | |
| GAAGACCCATTCGAGCCCAC+GGG | + | chr5_4:11394772-11394791 | Msa0837420:CDS | 60.0% | |
| TGAAGCCCGTGGGCTCGAAT+GGG | - | chr5_4:11394780-11394799 | None:intergenic | 60.0% | |
| ATGAAGCCCGTGGGCTCGAA+TGG | - | chr5_4:11394781-11394800 | None:intergenic | 60.0% | |
| !! | GTAAAGCGGGCTGGGCTCTA+AGG | - | chr5_4:11394824-11394843 | None:intergenic | 60.0% |
| ACGAGTGGTGATCGAGCCCT+AGG | - | chr5_4:11396018-11396037 | None:intergenic | 60.0% | |
| CATTGGACATCCAGCCAGCC+AGG | - | chr5_4:11397216-11397235 | None:intergenic | 60.0% | |
| GTTGTGGGAAATGCCCGCTC+CGG | - | chr5_4:11397608-11397627 | None:intergenic | 60.0% | |
| GGGGATTATCTTGGGCGCGC+AGG | - | chr5_4:11394684-11394703 | None:intergenic | 65.0% | |
| AGAGTGGGGGGAGGGAGATC+TGG | - | chr5_4:11394721-11394740 | None:intergenic | 65.0% | |
| GGGCGCGCAGGTGGAAGATG+TGG | - | chr5_4:11394672-11394691 | None:intergenic | 70.0% | |
| CCGCTCCGGAGGAACAGCTG+GGG | - | chr5_4:11397594-11397613 | None:intergenic | 70.0% | |
| CCCCAGCTGTTCCTCCGGAG+CGG | + | chr5_4:11397591-11397610 | Msa0837420:CDS | 70.0% | |
| CCCGCTCCGGAGGAACAGCT+GGG | - | chr5_4:11397595-11397614 | None:intergenic | 70.0% | |
| CCCAGCTGTTCCTCCGGAGC+GGG | + | chr5_4:11397592-11397611 | Msa0837420:CDS | 70.0% | |
| GTGGGAAATGCCCGCTCCGG+AGG | - | chr5_4:11397605-11397624 | None:intergenic | 70.0% | |
| GCCCGCTCCGGAGGAACAGC+TGG | - | chr5_4:11397596-11397615 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11394496 | 11398318 | 11394496 | ID=Msa0837420;Name=Msa0837420 |
| chr5_4 | mRNA | 11394496 | 11398318 | 11394496 | ID=Msa0837420-mRNA-1;Parent=Msa0837420;Name=Msa0837420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=54|0.33|0.75|0.75|1|1|4|234|522 |
| chr5_4 | exon | 11394496 | 11395134 | 11394496 | ID=Msa0837420-mRNA-1:exon:4958;Parent=Msa0837420-mRNA-1 |
| chr5_4 | exon | 11396784 | 11396942 | 11396784 | ID=Msa0837420-mRNA-1:exon:4959;Parent=Msa0837420-mRNA-1 |
| chr5_4 | exon | 11397142 | 11397246 | 11397142 | ID=Msa0837420-mRNA-1:exon:4960;Parent=Msa0837420-mRNA-1 |
| chr5_4 | exon | 11397365 | 11398318 | 11397365 | ID=Msa0837420-mRNA-1:exon:4961;Parent=Msa0837420-mRNA-1 |
| chr5_4 | five_prime_UTR | 11394496 | 11394549 | 11394496 | ID=Msa0837420-mRNA-1:five_prime_utr;Parent=Msa0837420-mRNA-1 |
| chr5_4 | CDS | 11394550 | 11395134 | 11394550 | ID=Msa0837420-mRNA-1:cds;Parent=Msa0837420-mRNA-1 |
| chr5_4 | CDS | 11396784 | 11396942 | 11396784 | ID=Msa0837420-mRNA-1:cds;Parent=Msa0837420-mRNA-1 |
| chr5_4 | CDS | 11397142 | 11397246 | 11397142 | ID=Msa0837420-mRNA-1:cds;Parent=Msa0837420-mRNA-1 |
| chr5_4 | CDS | 11397365 | 11398084 | 11397365 | ID=Msa0837420-mRNA-1:cds;Parent=Msa0837420-mRNA-1 |
| chr5_4 | three_prime_UTR | 11398085 | 11398318 | 11398085 | ID=Msa0837420-mRNA-1:three_prime_utr;Parent=Msa0837420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
