AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465610 MtrunA17_Chr1g0204781 96.154 234 9 0 1 234 1 234 4.82e-170 471
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465610 AT4G14713.3 40.000 250 102 5 10 238 9 231 2.94e-47 157
Msa1465610 AT4G14713.2 40.161 249 101 5 10 237 9 230 3.53e-47 157
Msa1465610 AT4G14713.1 39.759 249 102 5 10 237 9 230 1.08e-46 157
Msa1465610 AT4G14720.1 40.625 256 102 7 1 234 1 228 1.77e-45 154
Msa1465610 AT4G14720.2 40.625 256 102 7 1 234 1 228 2.66e-45 154
Msa1465610 AT4G14713.5 45.050 202 77 5 10 190 9 197 2.27e-43 146
Msa1465610 AT4G14713.4 45.050 202 77 5 10 190 9 197 2.27e-43 146

Find 142 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAGTGATTTATGTATT+TGG 0.147039 tig0045347:+4465 Msa1465610:three_prime_UTR
AAAACAAAGGCCCGCTTAAT+TGG 0.216208 tig0045347:-3969 Msa1465610:intergenic
CCGTTCATCGTTTCCGATTC+CGG 0.231819 tig0045347:-438 Msa1465610:intergenic
CAGGGATGCGCAGGCCTTCC+TGG 0.302807 tig0045347:+845 Msa1465610:intron
TGGAATACCCTCTGCATTAC+AGG 0.304356 tig0045347:+3767 Msa1465610:CDS
TGATAGTGATTTATGTATTT+GGG 0.326636 tig0045347:+4466 Msa1465610:three_prime_UTR
TCAACCTCCGCCGAAGGCTT+TGG 0.326869 tig0045347:+999 Msa1465610:CDS
AAGAAGACTTCTTTATCAAT+AGG 0.330075 tig0045347:-2652 Msa1465610:intergenic
CACTAGATAGGATAGGAAAC+AGG 0.337409 tig0045347:-4104 Msa1465610:intergenic
CGCAGATTCCTCAAAGATAA+AGG 0.351475 tig0045347:+552 Msa1465610:CDS
GAGGTTGAGGAGGGTGGTGG+TGG 0.353896 tig0045347:-984 Msa1465610:intergenic
TGCACACCTAGTGGGTCATT+TGG 0.371549 tig0045347:+2376 Msa1465610:CDS
GAGGAGGGTGGTGGTGGTGA+TGG 0.372920 tig0045347:-978 Msa1465610:intergenic
GATCGCCTGTGATTTGTTCC+AGG 0.376842 tig0045347:-863 Msa1465610:intergenic
TCCGTGGGTCTTTCAGAAAC+AGG 0.382345 tig0045347:-1063 Msa1465610:intergenic
CACAACACGGGTACGAGTAC+TGG 0.385806 tig0045347:-4446 Msa1465610:intergenic
GTTAACGACGTTGGCATCAT+TGG 0.389061 tig0045347:-1088 Msa1465610:intergenic
GCACACCTAGTGGGTCATTT+GGG 0.393611 tig0045347:+2377 Msa1465610:CDS
GTGGTGGTGATGGCGGTGAA+TGG 0.397278 tig0045347:-968 Msa1465610:intergenic
GATCCCGAAGATACTGCTTT+GGG 0.399067 tig0045347:+1021 Msa1465610:CDS
CTATCAACAAATTATCTACT+TGG 0.403507 tig0045347:-3921 Msa1465610:intergenic
GAGGTATGGAAGCTTGATAC+AGG 0.403759 tig0045347:-4788 Msa1465610:intergenic
TACCTGTTTGAGCGACTTGA+AGG 0.408154 tig0045347:-2693 Msa1465610:intergenic
TCCCACTTACCCTCTGTTGC+CGG 0.413304 tig0045347:+419 Msa1465610:five_prime_UTR
GGATCCCGAAGATACTGCTT+TGG 0.413616 tig0045347:+1020 Msa1465610:CDS
GCGGAGGTTGAGGAGGGTGG+TGG 0.414332 tig0045347:-987 Msa1465610:intergenic
TTACCCTCTGTTGCCGGAAT+CGG 0.415730 tig0045347:+425 Msa1465610:five_prime_UTR
AATAAATATTACCGATACTT+AGG 0.419397 tig0045347:-4823 Msa1465610:intergenic
AAGTCCCAAAGCAGTATCTT+CGG 0.424966 tig0045347:-1025 Msa1465610:intergenic
ACATCTTTACCTACCTTATC+CGG 0.425799 tig0045347:-2451 Msa1465610:intergenic
TATAAAAGATGTAGAGGGTC+AGG 0.427753 tig0045347:+4832 Msa1465610:three_prime_UTR
CTATAGCAGTAGTGTATAAG+AGG 0.429037 tig0045347:+4587 Msa1465610:three_prime_UTR
TGATGGAGTTTCGCCGGATA+AGG 0.433029 tig0045347:+2438 Msa1465610:CDS
GGAAGCACAGCTCGTGATGC+TGG 0.446112 tig0045347:+3796 Msa1465610:CDS
ATCCTTCAAGTCGCTCAAAC+AGG 0.448349 tig0045347:+2691 Msa1465610:CDS
GAAATATGAAGAAATCTTGT+GGG 0.450737 tig0045347:+4549 Msa1465610:three_prime_UTR
AGTTGTTACCTTTATCTTTG+AGG 0.457102 tig0045347:-560 Msa1465610:intergenic
ACATAAATCACTATCAATCT+CGG 0.457458 tig0045347:-4478 Msa1465610:intergenic
GATAGGAAACAGGGATCAAA+TGG 0.459786 tig0045347:-4094 Msa1465610:intergenic
AAAGCCTTCGGCGGAGGTTG+AGG 0.462001 tig0045347:-997 Msa1465610:intergenic
AATTTAATACATACATCAAA+AGG 0.462272 tig0045347:-4632 Msa1465610:intergenic
TTTGGATGTCATCCCCACTT+TGG 0.465237 tig0045347:+4180 Msa1465610:three_prime_UTR
ACTTAGGTTCTCATAATTTG+AGG 0.465386 tig0045347:-4807 Msa1465610:intergenic
GAGGGTGGTGGTGGTGATGG+CGG 0.465413 tig0045347:-975 Msa1465610:intergenic
TTGGTGTAGTGAGGGAGTGA+TGG 0.465840 tig0045347:-325 Msa1465610:intergenic
TGAAGGATTGTTGTGTCAGT+AGG 0.473687 tig0045347:-2676 Msa1465610:intergenic
GCCAACGTCGTTAACCCTCC+CGG 0.474511 tig0045347:+1096 Msa1465610:CDS
TTTATTTGAAGGATTATCCT+GGG 0.483950 tig0045347:-2596 Msa1465610:intergenic
GGTTCTCATAATTTGAGGTA+TGG 0.484547 tig0045347:-4802 Msa1465610:intergenic
GGATCCAAAGCCTTCGGCGG+AGG 0.495977 tig0045347:-1003 Msa1465610:intergenic
GCCTTCGGCGGAGGTTGAGG+AGG 0.498126 tig0045347:-994 Msa1465610:intergenic
GGTGTAGTGTAGTGTAGTGT+TGG 0.502052 tig0045347:-344 Msa1465610:intergenic
CTTTGAGAGAAATCACCTGC+TGG 0.508162 tig0045347:-885 Msa1465610:intergenic
TTCCGGCAACAGAGGGTAAG+TGG 0.509404 tig0045347:-421 Msa1465610:intergenic
AGTGTAGTGTTGGTGTAGTG+AGG 0.513491 tig0045347:-334 Msa1465610:intergenic
CCCTCCTCAACCTCCGCCGA+AGG 0.515746 tig0045347:+993 Msa1465610:CDS
AAATGTCATCTTCAGTGAGT+TGG 0.516724 tig0045347:-506 Msa1465610:intergenic
GGGTAAGTGGGACCATGTAC+AGG 0.520861 tig0045347:-408 Msa1465610:intergenic
AGTCCCAAAGCAGTATCTTC+GGG 0.521983 tig0045347:-1024 Msa1465610:intergenic
AAGATCACAATAGCATGACT+TGG 0.522103 tig0045347:-4004 Msa1465610:intergenic
GTGATGGCGGTGAATGGCGG+AGG 0.524011 tig0045347:-962 Msa1465610:intergenic
CATAAATCACTATCAATCTC+GGG 0.524346 tig0045347:-4477 Msa1465610:intergenic
CACAGCTCGTGATGCTGGTA+GGG 0.524753 tig0045347:+3801 Msa1465610:CDS
TCTTCAGTGAGTTGGTTAAG+AGG 0.524819 tig0045347:-498 Msa1465610:intergenic
TGGTGTAGTGAGGGAGTGAT+GGG 0.526094 tig0045347:-324 Msa1465610:intergenic
TGAAATATGAAGAAATCTTG+TGG 0.526157 tig0045347:+4548 Msa1465610:three_prime_UTR
GTGCTACTATTCAGCAGTTA+CGG 0.526511 tig0045347:+4348 Msa1465610:three_prime_UTR
ACACCAACGCCGACGGTAGC+CGG 0.528495 tig0045347:-937 Msa1465610:intergenic
TCGGCGGAGGTTGAGGAGGG+TGG 0.532423 tig0045347:-990 Msa1465610:intergenic
CCTCTGCATTACAGGGAGAA+AGG 0.534355 tig0045347:+3775 Msa1465610:CDS
TCTTCGGGATCCAAAGCCTT+CGG 0.534680 tig0045347:-1009 Msa1465610:intergenic
GTGGTGATGGCGGTGAATGG+CGG 0.537319 tig0045347:-965 Msa1465610:intergenic
CTTTCTCCCTGTAATGCAGA+GGG 0.537471 tig0045347:-3793 Msa1465610:intergenic
TTTCCGATTCCGGCAACAGA+GGG 0.537833 tig0045347:-428 Msa1465610:intergenic
GGGGATGACATCCAAAACTA+AGG 0.539631 tig0045347:-4192 Msa1465610:intergenic
TTGGCATCATTGGTTTCCGT+GGG 0.540559 tig0045347:-1078 Msa1465610:intergenic
GTTGGCATCATTGGTTTCCG+TGG 0.541169 tig0045347:-1079 Msa1465610:intergenic
GAAGGATTGTTGTGTCAGTA+GGG 0.541726 tig0045347:-2675 Msa1465610:intergenic
ACAGATGATTCCAATTAAGC+GGG 0.546163 tig0045347:+3940 Msa1465610:three_prime_UTR
GCACAGCTCGTGATGCTGGT+AGG 0.547166 tig0045347:+3800 Msa1465610:CDS
GTTAAGAGGTCTGTCGAGGA+TGG 0.553244 tig0045347:-484 Msa1465610:intergenic
TGAAGGATTATCCTGGGGAA+AGG 0.554218 tig0045347:-2590 Msa1465610:intergenic
CAAATCACAGGCGATCCAGC+AGG 0.554699 tig0045347:+870 Msa1465610:CDS
TACAGATGATTCCAATTAAG+CGG 0.560224 tig0045347:+3939 Msa1465610:three_prime_UTR
ATGTCCGTCCTCCTTTCCCC+AGG 0.560265 tig0045347:+2579 Msa1465610:CDS
GAGGTCTGTCGAGGATGGAT+CGG 0.562371 tig0045347:-479 Msa1465610:intergenic
AATTGATCATGTGTCAGTAC+CGG 0.563397 tig0045347:+4326 Msa1465610:three_prime_UTR
GTGTAGTGTTGGTGTAGTGA+GGG 0.564606 tig0045347:-333 Msa1465610:intergenic
CCTTTCTCCCTGTAATGCAG+AGG 0.565241 tig0045347:-3794 Msa1465610:intergenic
GCCTGTGATTTGTTCCAGGA+AGG 0.565338 tig0045347:-859 Msa1465610:intergenic
TGTCTATGATGGAGTTTCGC+CGG 0.565522 tig0045347:+2432 Msa1465610:CDS
TCATACCACCATGTCAGTGC+AGG 0.565592 tig0045347:-4700 Msa1465610:intergenic
ACACCGGCTACCGTCGGCGT+TGG 0.567567 tig0045347:+934 Msa1465610:CDS
GCCTTCCTGGAACAAATCAC+AGG 0.567775 tig0045347:+858 Msa1465610:CDS
CCTTCGGCGGAGGTTGAGGA+GGG 0.574219 tig0045347:-993 Msa1465610:intergenic
ACCTGTTTCTGAAAGACCCA+CGG 0.575091 tig0045347:+1062 Msa1465610:CDS
GAGGATGGATCGGAAGGAAA+CGG 0.575789 tig0045347:-469 Msa1465610:intergenic
CCAACGTCGTTAACCCTCCC+GGG 0.580189 tig0045347:+1097 Msa1465610:CDS
ATGTGCACCCGTATATTACC+TGG 0.585106 tig0045347:+4493 Msa1465610:three_prime_UTR
GTGTTCGTACAGGGATGCGC+AGG 0.586574 tig0045347:+836 Msa1465610:intron
TGATGGGTCAAGAAGTGTGA+AGG 0.587661 tig0045347:-308 Msa1465610:intergenic
CTGTTTCCTATCCTATCTAG+TGG 0.588583 tig0045347:+4086 Msa1465610:three_prime_UTR
GTTTCCGATTCCGGCAACAG+AGG 0.591253 tig0045347:-429 Msa1465610:intergenic
GGTAAGGTGAATGTCTATGA+TGG 0.592087 tig0045347:+2421 Msa1465610:CDS
TTACTGGAAGACATGCATGA+TGG 0.592200 tig0045347:-4249 Msa1465610:intergenic
CACAGAGGGTGCACACCTAG+TGG 0.593532 tig0045347:+2367 Msa1465610:intron
GGAATACCCTCTGCATTACA+GGG 0.598431 tig0045347:+3768 Msa1465610:CDS
AGATCACAATAGCATGACTT+GGG 0.601852 tig0045347:-4003 Msa1465610:intergenic
TTATCCTGGGGAAAGGAGGA+CGG 0.604225 tig0045347:-2583 Msa1465610:intergenic
AATTATGAGAACCTAAGTAT+CGG 0.605828 tig0045347:+4793 Msa1465610:three_prime_UTR
AGGTATGGAAGCTTGATACA+GGG 0.607107 tig0045347:-4787 Msa1465610:intergenic
AGGATTATCCTGGGGAAAGG+AGG 0.608359 tig0045347:-2587 Msa1465610:intergenic
ATGCTTAACCTGCACTGACA+TGG 0.609819 tig0045347:+4673 Msa1465610:three_prime_UTR
TCCGGCAACAGAGGGTAAGT+GGG 0.613361 tig0045347:-420 Msa1465610:intergenic
TTATCAATAGGTAAGTTGCA+AGG 0.614238 tig0045347:-2640 Msa1465610:intergenic
TCTGTCGAGGATGGATCGGA+AGG 0.617863 tig0045347:-475 Msa1465610:intergenic
ACCTACTGACGATGATACAC+CGG 0.620314 tig0045347:+918 Msa1465610:CDS
AAGCTCGTGAATTCCAAAGT+GGG 0.622194 tig0045347:-4212 Msa1465610:intergenic
ATTGACATATATTGCAACAG+AGG 0.623367 tig0045347:-4313 Msa1465610:intergenic
GAAGCTCGTGAATTCCAAAG+TGG 0.624647 tig0045347:-4213 Msa1465610:intergenic
CCGGAATCGGAAACGATGAA+CGG 0.630536 tig0045347:+438 Msa1465610:exon
GCGATATCTTGAAAAGCGAA+AGG 0.632146 tig0045347:+4877 Msa1465610:three_prime_UTR
GGAGGAGACACCAACGCCGA+CGG 0.632850 tig0045347:-944 Msa1465610:intergenic
ATAAATTCTATACCTGTACA+TGG 0.634167 tig0045347:+396 Msa1465610:five_prime_UTR
AATGGAGAACAGACCCGGGA+GGG 0.635558 tig0045347:-1110 Msa1465610:intergenic
CCCGGGAGGGTTAACGACGT+TGG 0.636104 tig0045347:-1097 Msa1465610:intergenic
AGCAGTAACTTTATAACACA+AGG 0.639761 tig0045347:-4160 Msa1465610:intergenic
GATGATACACCGGCTACCGT+CGG 0.644121 tig0045347:+928 Msa1465610:CDS
ATCTTGAAAAGCGAAAGGAC+AGG 0.644523 tig0045347:+4882 Msa1465610:three_prime_UTR
TAACTGCTGAATAGTAGCAC+CGG 0.645520 tig0045347:-4364 Msa1465610:intergenic
ACAGAGGGTGCACACCTAGT+GGG 0.649773 tig0045347:+2368 Msa1465610:intron
TCGGGATCCAAAGCCTTCGG+CGG 0.652180 tig0045347:-1006 Msa1465610:intergenic
ATTTGCCCAAATGACCCACT+AGG 0.656723 tig0045347:-2382 Msa1465610:intergenic
ACTAGATAGGATAGGAAACA+GGG 0.659191 tig0045347:-4103 Msa1465610:intergenic
TTATTTGAAGGATTATCCTG+GGG 0.659271 tig0045347:-2595 Msa1465610:intergenic
GATGGGTCAAGAAGTGTGAA+GGG 0.659785 tig0045347:-307 Msa1465610:intergenic
CTTAACCTGCACTGACATGG+TGG 0.661916 tig0045347:+4676 Msa1465610:three_prime_UTR
GCCGGTGTATCATCGTCAGT+AGG 0.662569 tig0045347:-919 Msa1465610:intergenic
AGCTCGTGAATTCCAAAGTG+GGG 0.663321 tig0045347:-4211 Msa1465610:intergenic
GTTGGTTAAGAGGTCTGTCG+AGG 0.685077 tig0045347:-488 Msa1465610:intergenic
AAATGGAGAACAGACCCGGG+AGG 0.721352 tig0045347:-1111 Msa1465610:intergenic
GAATCGGAAACGATGAACGG+CGG 0.745087 tig0045347:+441 Msa1465610:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAAAAATGAAATGA+TGG + tig0045347:1279-1298 Msa1465610:intron 10.0%
!!! TTATTTATTTGTTTAGAATT+AGG + tig0045347:1434-1453 Msa1465610:intron 10.0%
!!! TTTAATATCATCTATATTTT+GGG + tig0045347:1670-1689 Msa1465610:intron 10.0%
!!! TATCTAAAGTAATAATTAAA+TGG - tig0045347:1807-1826 Msa1465610:intergenic 10.0%
!! AAAAAAACATGAAAGAAAAA+TGG - tig0045347:1131-1150 Msa1465610:intergenic 15.0%
!!! GTTTAATTATTTTTTTGTGT+TGG + tig0045347:1160-1179 Msa1465610:intron 15.0%
!!! CTTTAATATCATCTATATTT+TGG + tig0045347:1669-1688 Msa1465610:intron 15.0%
!!! TCATATTTAATTGTTGTTTA+CGG + tig0045347:1713-1732 Msa1465610:intron 15.0%
!! TAACCTAAAATAATCATTTA+GGG - tig0045347:1874-1893 Msa1465610:intergenic 15.0%
!! TTAACCTAAAATAATCATTT+AGG - tig0045347:1875-1894 Msa1465610:intergenic 15.0%
!!! ATGATCATTTTGTATATTAA+AGG + tig0045347:1897-1916 Msa1465610:intron 15.0%
!! ATAATTAACAAAACTAACAT+TGG - tig0045347:2307-2326 Msa1465610:intergenic 15.0%
!!! ATAGCTTTAATTCAAAAAAT+CGG - tig0045347:3337-3356 Msa1465610:intergenic 15.0%
!! AATTTAATACATACATCAAA+AGG - tig0045347:4616-4635 Msa1465610:intergenic 15.0%
!!! TTTTGATGTATGTATTAAAT+TGG + tig0045347:4615-4634 Msa1465610:three_prime_UTR 15.0%
!! ATTGGAGTACAAAAATTAAA+TGG - tig0045347:707-726 Msa1465610:intergenic 20.0%
!!! TTTGTTATCTTTTGTTTCTT+GGG + tig0045347:1204-1223 Msa1465610:intron 20.0%
!!! TTATTTGTTTAGAATTAGGT+TGG + tig0045347:1438-1457 Msa1465610:intron 20.0%
!!! TATTTGTTTAGAATTAGGTT+GGG + tig0045347:1439-1458 Msa1465610:intron 20.0%
!!! AAACCCTAAATGATTATTTT+AGG + tig0045347:1868-1887 Msa1465610:intron 20.0%
!! TACAAGTATGGTTAATTATT+GGG - tig0045347:2523-2542 Msa1465610:intergenic 20.0%
!! ATACAAGTATGGTTAATTAT+TGG - tig0045347:2524-2543 Msa1465610:intergenic 20.0%
!! TAATTCAAAAAATCGGTATT+CGG - tig0045347:3330-3349 Msa1465610:intergenic 20.0%
!! TGAATTAATGCAAAAATCAT+TGG + tig0045347:3447-3466 Msa1465610:intron 20.0%
!!! CTTTTACTTGTTTAAAATCA+TGG + tig0045347:3570-3589 Msa1465610:intron 20.0%
!!! TTTTTACTCGTTTAAAATCA+TGG + tig0045347:3673-3692 Msa1465610:intron 20.0%
!!! AAGATGTTTAACTTCATAAT+TGG + tig0045347:3713-3732 Msa1465610:intron 20.0%
!! TTTATCTGTAAAACCAAATT+TGG - tig0045347:3743-3762 Msa1465610:intergenic 20.0%
!!! ATTTGGTTTTACAGATAAAA+TGG + tig0045347:3744-3763 Msa1465610:intron 20.0%
!!! TTGATAGTGATTTATGTATT+TGG + tig0045347:4465-4484 Msa1465610:three_prime_UTR 20.0%
!!! TGATAGTGATTTATGTATTT+GGG + tig0045347:4466-4485 Msa1465610:three_prime_UTR 20.0%
!! AATAAATATTACCGATACTT+AGG - tig0045347:4807-4826 Msa1465610:intergenic 20.0%
!!! TTGTTTTATAAAAGATGTAG+AGG + tig0045347:4826-4845 Msa1465610:three_prime_UTR 20.0%
!!! TGTTTTATAAAAGATGTAGA+GGG + tig0045347:4827-4846 Msa1465610:three_prime_UTR 20.0%
!!! TTACCACTTTTTTAGTTTTA+AGG + tig0045347:4959-4978 Msa1465610:three_prime_UTR 20.0%
!! ATTCCTTAAAACTAAAAAAG+TGG - tig0045347:4965-4984 Msa1465610:intergenic 20.0%
! ATAAATTCTATACCTGTACA+TGG + tig0045347:396-415 Msa1465610:five_prime_UTR 25.0%
!! ATATAGAAAGTATGAAGCAT+TGG - tig0045347:725-744 Msa1465610:intergenic 25.0%
!!! GTTTGTTATCTTTTGTTTCT+TGG + tig0045347:1203-1222 Msa1465610:intron 25.0%
!! GAGTTGATTATAGCATAATT+TGG + tig0045347:1382-1401 Msa1465610:intron 25.0%
!!! TTTTATAGCTTTATGTGAAG+TGG + tig0045347:1476-1495 Msa1465610:intron 25.0%
!!! TTTATAGCTTTATGTGAAGT+GGG + tig0045347:1477-1496 Msa1465610:intron 25.0%
!!! TCTAGATATTTGATAATGAC+AGG - tig0045347:1640-1659 Msa1465610:intergenic 25.0%
! TTTAGATATCATGTTTGAAG+TGG + tig0045347:1819-1838 Msa1465610:intron 25.0%
!! TTAGATATCATGTTTGAAGT+GGG + tig0045347:1820-1839 Msa1465610:intron 25.0%
! AAATTCCACATTAACAAAAC+TGG - tig0045347:2017-2036 Msa1465610:intergenic 25.0%
! TGACTATTATTACTACCAAT+TGG - tig0045347:2049-2068 Msa1465610:intergenic 25.0%
!!! AAGTGCAGTTTTTAGTTTAA+TGG - tig0045347:2131-2150 Msa1465610:intergenic 25.0%
! TTTGTGTAAAATATGACTGA+AGG + tig0045347:2277-2296 Msa1465610:intron 25.0%
! GGTGAAATTTAATTGATGTA+TGG - tig0045347:2499-2518 Msa1465610:intergenic 25.0%
! TTTATTTGAAGGATTATCCT+GGG - tig0045347:2599-2618 Msa1465610:intergenic 25.0%
!!! TTTTATTTGAAGGATTATCC+TGG - tig0045347:2600-2619 Msa1465610:intergenic 25.0%
! AAATAAAAATGCAGCAGTTT+GGG + tig0045347:2612-2631 Msa1465610:CDS 25.0%
! AAGAAGACTTCTTTATCAAT+AGG - tig0045347:2655-2674 Msa1465610:intergenic 25.0%
!!! TTTTTTCATGCATACTTTTC+TGG + tig0045347:2788-2807 Msa1465610:intron 25.0%
! TTATTGAAAATAGGTGTTCT+AGG - tig0045347:3154-3173 Msa1465610:intergenic 25.0%
! GTTCAAGTCAAATATTAGAT+CGG - tig0045347:3219-3238 Msa1465610:intergenic 25.0%
!!! CAATGACTTGTTTAAAATCA+TGG + tig0045347:3394-3413 Msa1465610:intron 25.0%
!! TTTTATCTTGTGTTCTCTTT+TGG + tig0045347:3862-3881 Msa1465610:three_prime_UTR 25.0%
! CTATCAACAAATTATCTACT+TGG - tig0045347:3905-3924 Msa1465610:intergenic 25.0%
!!! CTATTTTTCTACCTTAGTTT+TGG + tig0045347:4162-4181 Msa1465610:three_prime_UTR 25.0%
!! TCTAATAGTAGCAATTTTAC+TGG - tig0045347:4249-4268 Msa1465610:intergenic 25.0%
! ACATAAATCACTATCAATCT+CGG - tig0045347:4462-4481 Msa1465610:intergenic 25.0%
! TGAAATATGAAGAAATCTTG+TGG + tig0045347:4548-4567 Msa1465610:three_prime_UTR 25.0%
! GAAATATGAAGAAATCTTGT+GGG + tig0045347:4549-4568 Msa1465610:three_prime_UTR 25.0%
! AATTATGAGAACCTAAGTAT+CGG + tig0045347:4793-4812 Msa1465610:three_prime_UTR 25.0%
AGTTGTTACCTTTATCTTTG+AGG - tig0045347:563-582 Msa1465610:intergenic 30.0%
ATTAAATGGAAGTTGTTCTC+AGG - tig0045347:693-712 Msa1465610:intergenic 30.0%
TAATGTTTAGTGAGAGTGAA+AGG + tig0045347:1347-1366 Msa1465610:intron 30.0%
!! TTAGAATTAGGTTGGGAAAT+TGG + tig0045347:1446-1465 Msa1465610:intron 30.0%
! GATGAATGTGTGTTGATATA+TGG + tig0045347:1518-1537 Msa1465610:intron 30.0%
! AATGTGTGTTGATATATGGA+AGG + tig0045347:1522-1541 Msa1465610:intron 30.0%
GAGTGGATGGAAAATATTTA+GGG + tig0045347:1559-1578 Msa1465610:intron 30.0%
! TTTGAGCTTTTCTTTGTTAC+TGG + tig0045347:1586-1605 Msa1465610:intron 30.0%
! TTGAGCTTTTCTTTGTTACT+GGG + tig0045347:1587-1606 Msa1465610:intron 30.0%
CATGACTTCAACAATGAATA+TGG + tig0045347:1981-2000 Msa1465610:intron 30.0%
!!! AATTGCCAGTTTTGTTAATG+TGG + tig0045347:2009-2028 Msa1465610:intron 30.0%
GAATTTCTTTCAGTTCCAAT+TGG + tig0045347:2031-2050 Msa1465610:intron 30.0%
ATGGAATCAAGAGATGTTAA+AGG - tig0045347:2112-2131 Msa1465610:intergenic 30.0%
! TCCATTCAAGTTCTTAACAT+TGG + tig0045347:2326-2345 Msa1465610:intron 30.0%
ACCAATGTTAAGAACTTGAA+TGG - tig0045347:2330-2349 Msa1465610:intergenic 30.0%
! CAAATGACAATTTTCTACTG+TGG + tig0045347:2400-2419 Msa1465610:CDS 30.0%
AAGTATGGTTAATTATTGGG+AGG - tig0045347:2520-2539 Msa1465610:intergenic 30.0%
TTAACCATACTTGTATTTGC+AGG + tig0045347:2528-2547 Msa1465610:intron 30.0%
TTATTTGAAGGATTATCCTG+GGG - tig0045347:2598-2617 Msa1465610:intergenic 30.0%
!! ACTGCTGCATTTTTATTTGA+AGG - tig0045347:2610-2629 Msa1465610:intergenic 30.0%
CAAATAAAAATGCAGCAGTT+TGG + tig0045347:2611-2630 Msa1465610:CDS 30.0%
TTATCAATAGGTAAGTTGCA+AGG - tig0045347:2643-2662 Msa1465610:intergenic 30.0%
! AAACAGGTAGTTAGCAATTT+TGG + tig0045347:2707-2726 Msa1465610:intron 30.0%
! AACAGGTAGTTAGCAATTTT+GGG + tig0045347:2708-2727 Msa1465610:intron 30.0%
AATTATCACAATCCAACACA+TGG + tig0045347:3117-3136 Msa1465610:intron 30.0%
! ACCTATTTTCAATAACCACA+CGG + tig0045347:3159-3178 Msa1465610:intron 30.0%
ATGCTATCAAACTATCAAAC+TGG - tig0045347:3194-3213 Msa1465610:intergenic 30.0%
! AGTTTGATAGTTTGATAGCA+TGG + tig0045347:3193-3212 Msa1465610:intron 30.0%
CATGGTAACATTTGTAAGTT+AGG + tig0045347:3412-3431 Msa1465610:intron 30.0%
! CATAATTGGTGTTCCAAATT+TGG + tig0045347:3727-3746 Msa1465610:intron 30.0%
!! TGGTTTTACAGATAAAATGG+TGG + tig0045347:3747-3766 Msa1465610:intron 30.0%
TACAGATGATTCCAATTAAG+CGG + tig0045347:3939-3958 Msa1465610:three_prime_UTR 30.0%
!! AAAAGCTTTTTCCACTAGAT+AGG - tig0045347:4100-4119 Msa1465610:intergenic 30.0%
AGCAGTAACTTTATAACACA+AGG - tig0045347:4144-4163 Msa1465610:intergenic 30.0%
ATTGACATATATTGCAACAG+AGG - tig0045347:4297-4316 Msa1465610:intergenic 30.0%
CATAAATCACTATCAATCTC+GGG - tig0045347:4461-4480 Msa1465610:intergenic 30.0%
! TCTTTTAGCCAGGTAATATA+CGG - tig0045347:4504-4523 Msa1465610:intergenic 30.0%
ACTTAGGTTCTCATAATTTG+AGG - tig0045347:4791-4810 Msa1465610:intergenic 30.0%
AAATGTCATCTTCAGTGAGT+TGG - tig0045347:509-528 Msa1465610:intergenic 35.0%
GAAGAAGAAAGAGAAAGAGA+AGG - tig0045347:588-607 Msa1465610:intergenic 35.0%
! GTGAAGTGGGAGATAATTTT+TGG + tig0045347:1490-1509 Msa1465610:intron 35.0%
GGAGTGGATGGAAAATATTT+AGG + tig0045347:1558-1577 Msa1465610:intron 35.0%
TGAGATTGTCAGTACTTTGA+TGG - tig0045347:1765-1784 Msa1465610:intergenic 35.0%
!! CTGAAAAAAGTGTTGCGTTA+GGG + tig0045347:2076-2095 Msa1465610:intron 35.0%
TTATGCCATTCTTTGTTGGA+AGG + tig0045347:2149-2168 Msa1465610:intron 35.0%
! GACAATTTTCTACTGTGGTA+AGG + tig0045347:2405-2424 Msa1465610:CDS 35.0%
ACATCTTTACCTACCTTATC+CGG - tig0045347:2454-2473 Msa1465610:intergenic 35.0%
TGTGACTATGTCATAGTCAA+TGG - tig0045347:2903-2922 Msa1465610:intergenic 35.0%
! CCTATTTTCAATAACCACAC+GGG + tig0045347:3160-3179 Msa1465610:intron 35.0%
CATCCCAGTGATTTAAAAAC+CGG - tig0045347:3279-3298 Msa1465610:intergenic 35.0%
! GTTGAGCTTGTTCATCTTAT+AGG - tig0045347:3372-3391 Msa1465610:intergenic 35.0%
TAAAATCATGGCATCTAGTC+AGG + tig0045347:3685-3704 Msa1465610:intron 35.0%
ACAGATGATTCCAATTAAGC+GGG + tig0045347:3940-3959 Msa1465610:three_prime_UTR 35.0%
GGATGCCAAGAAAAAAACAA+AGG - tig0045347:3966-3985 Msa1465610:intergenic 35.0%
AGATCACAATAGCATGACTT+GGG - tig0045347:3987-4006 Msa1465610:intergenic 35.0%
AAGATCACAATAGCATGACT+TGG - tig0045347:3988-4007 Msa1465610:intergenic 35.0%
ACTAGATAGGATAGGAAACA+GGG - tig0045347:4087-4106 Msa1465610:intergenic 35.0%
! CTTTTTCCACTAGATAGGAT+AGG - tig0045347:4095-4114 Msa1465610:intergenic 35.0%
AATTGATCATGTGTCAGTAC+CGG + tig0045347:4326-4345 Msa1465610:three_prime_UTR 35.0%
! CATGCATGGAATCTTTTGAA+GGG - tig0045347:4382-4401 Msa1465610:intergenic 35.0%
! ACATGCATGGAATCTTTTGA+AGG - tig0045347:4383-4402 Msa1465610:intergenic 35.0%
! ACGCATATTTTGTACATGCA+TGG - tig0045347:4396-4415 Msa1465610:intergenic 35.0%
! CTTTTAGCCAGGTAATATAC+GGG - tig0045347:4503-4522 Msa1465610:intergenic 35.0%
! ATGTACAAGTTCTTTTAGCC+AGG - tig0045347:4514-4533 Msa1465610:intergenic 35.0%
CTATAGCAGTAGTGTATAAG+AGG + tig0045347:4587-4606 Msa1465610:three_prime_UTR 35.0%
! GGTTCTCATAATTTGAGGTA+TGG - tig0045347:4786-4805 Msa1465610:intergenic 35.0%
TATAAAAGATGTAGAGGGTC+AGG + tig0045347:4832-4851 Msa1465610:three_prime_UTR 35.0%
CTAAAAAAGTGGTAACACGA+GGG - tig0045347:4954-4973 Msa1465610:intergenic 35.0%
ACTAAAAAAGTGGTAACACG+AGG - tig0045347:4955-4974 Msa1465610:intergenic 35.0%
GATATAGAGAGAGAGAGAGA+GGG - tig0045347:368-387 Msa0052260:intergenic 40.0%
TGATATAGAGAGAGAGAGAG+AGG - tig0045347:369-388 Msa0052260:intergenic 40.0%
!! TCTTCAGTGAGTTGGTTAAG+AGG - tig0045347:501-520 Msa1465610:intergenic 40.0%
CGCAGATTCCTCAAAGATAA+AGG + tig0045347:552-571 Msa1465610:CDS 40.0%
TGGAGCATGAGAGGATAAAA+TGG - tig0045347:658-677 Msa1465610:intergenic 40.0%
! TTTTATCCTCTCATGCTCCA+TGG + tig0045347:658-677 Msa1465610:intron 40.0%
AAGTCCCAAAGCAGTATCTT+CGG - tig0045347:1028-1047 Msa1465610:intergenic 40.0%
AGAAAAATGGAGAACAGACC+CGG - tig0045347:1118-1137 Msa1465610:intergenic 40.0%
TGACTGTGTCAGTATCATTC+CGG - tig0045347:1252-1271 Msa1465610:intergenic 40.0%
ATGGAAGGTGAATCTGTTTG+TGG + tig0045347:1537-1556 Msa1465610:intron 40.0%
ACTGGGATGTATGTATTCTG+TGG + tig0045347:1604-1623 Msa1465610:intron 40.0%
! TTACGGTTTTCTCTTCATGC+TGG + tig0045347:1730-1749 Msa1465610:intron 40.0%
! TACGGTTTTCTCTTCATGCT+GGG + tig0045347:1731-1750 Msa1465610:intron 40.0%
GCTAGATATCAACTGAGAGA+AGG + tig0045347:1844-1863 Msa1465610:intron 40.0%
! AAATATACCAAGCGCTGTGT+TGG + tig0045347:1942-1961 Msa1465610:intron 40.0%
!!! CCTAACGCAACACTTTTTTC+AGG - tig0045347:2078-2097 Msa1465610:intergenic 40.0%
!! CCTGAAAAAAGTGTTGCGTT+AGG + tig0045347:2075-2094 Msa1465610:intron 40.0%
GCACTTATGCCATTCTTTGT+TGG + tig0045347:2145-2164 Msa1465610:intron 40.0%
AGACTCCTTCCAACAAAGAA+TGG - tig0045347:2157-2176 Msa1465610:intergenic 40.0%
ATTCTTTGTTGGAAGGAGTC+TGG + tig0045347:2156-2175 Msa1465610:intron 40.0%
TTCTTTGTTGGAAGGAGTCT+GGG + tig0045347:2157-2176 Msa1465610:intron 40.0%
TAAATTTGATGCGAGCACAG+AGG + tig0045347:2352-2371 Msa1465610:intron 40.0%
AAATTTGATGCGAGCACAGA+GGG + tig0045347:2353-2372 Msa1465610:intron 40.0%
GGTAAGGTGAATGTCTATGA+TGG + tig0045347:2421-2440 Msa1465610:CDS 40.0%
TGGCAAGATATTCATGCAAG+AGG - tig0045347:2479-2498 Msa1465610:intergenic 40.0%
GAAGGATTGTTGTGTCAGTA+GGG - tig0045347:2678-2697 Msa1465610:intergenic 40.0%
TGAAGGATTGTTGTGTCAGT+AGG - tig0045347:2679-2698 Msa1465610:intergenic 40.0%
GTATGATAAGCACTTGCAGA+AGG + tig0045347:2832-2851 Msa1465610:intron 40.0%
! CAATCCAACACATGGTTTGT+TGG + tig0045347:3125-3144 Msa1465610:intron 40.0%
CCCGTGTGGTTATTGAAAAT+AGG - tig0045347:3163-3182 Msa1465610:intergenic 40.0%
! ATTTTCAATAACCACACGGG+AGG + tig0045347:3163-3182 Msa1465610:intron 40.0%
ACTTGAACCGATTATCCCTT+CGG + tig0045347:3231-3250 Msa1465610:intron 40.0%
CAGTGATTTAAAAACCGGCT+CGG - tig0045347:3274-3293 Msa1465610:intergenic 40.0%
!! GAGCCGGTTTTTAAATCACT+GGG + tig0045347:3273-3292 Msa1465610:intron 40.0%
ATCGGTATTCGGAGTGAATT+TGG - tig0045347:3319-3338 Msa1465610:intergenic 40.0%
CATGGCAACATCTACAAGTT+AGG + tig0045347:3588-3607 Msa1465610:intron 40.0%
TTGTTCATCTACGAGATGCA+TGG - tig0045347:3645-3664 Msa1465610:intergenic 40.0%
AAAACAAAGGCCCGCTTAAT+TGG - tig0045347:3953-3972 Msa1465610:intergenic 40.0%
GATAGGAAACAGGGATCAAA+TGG - tig0045347:4078-4097 Msa1465610:intergenic 40.0%
CACTAGATAGGATAGGAAAC+AGG - tig0045347:4088-4107 Msa1465610:intergenic 40.0%
CTGTTTCCTATCCTATCTAG+TGG + tig0045347:4086-4105 Msa1465610:three_prime_UTR 40.0%
AAGCTCGTGAATTCCAAAGT+GGG - tig0045347:4196-4215 Msa1465610:intergenic 40.0%
TTACTGGAAGACATGCATGA+TGG - tig0045347:4233-4252 Msa1465610:intergenic 40.0%
TAACTGCTGAATAGTAGCAC+CGG - tig0045347:4348-4367 Msa1465610:intergenic 40.0%
! GTGCTACTATTCAGCAGTTA+CGG + tig0045347:4348-4367 Msa1465610:three_prime_UTR 40.0%
TCGGGTGAAAAAACACAACA+CGG - tig0045347:4443-4462 Msa1465610:intergenic 40.0%
AGGTATGGAAGCTTGATACA+GGG - tig0045347:4771-4790 Msa1465610:intergenic 40.0%
GCGATATCTTGAAAAGCGAA+AGG + tig0045347:4877-4896 Msa1465610:three_prime_UTR 40.0%
ATCTTGAAAAGCGAAAGGAC+AGG + tig0045347:4882-4901 Msa1465610:three_prime_UTR 40.0%
! GATGGGTCAAGAAGTGTGAA+GGG - tig0045347:310-329 Msa0052260:intergenic 45.0%
! TGATGGGTCAAGAAGTGTGA+AGG - tig0045347:311-330 Msa0052260:intergenic 45.0%
!! GTGTAGTGTTGGTGTAGTGA+GGG - tig0045347:336-355 Msa0052260:intergenic 45.0%
!! AGTGTAGTGTTGGTGTAGTG+AGG - tig0045347:337-356 Msa0052260:intergenic 45.0%
GGTGTAGTGTAGTGTAGTGT+TGG - tig0045347:347-366 Msa0052260:intergenic 45.0%
! CTTTGAGAGAAATCACCTGC+TGG - tig0045347:888-907 Msa1465610:intergenic 45.0%
ACCTACTGACGATGATACAC+CGG + tig0045347:918-937 Msa1465610:CDS 45.0%
GATCCCGAAGATACTGCTTT+GGG + tig0045347:1021-1040 Msa1465610:CDS 45.0%
AGTCCCAAAGCAGTATCTTC+GGG - tig0045347:1027-1046 Msa1465610:intergenic 45.0%
!! ACCTGTTTCTGAAAGACCCA+CGG + tig0045347:1062-1081 Msa1465610:CDS 45.0%
!! TTGGCATCATTGGTTTCCGT+GGG - tig0045347:1081-1100 Msa1465610:intergenic 45.0%
GTTAACGACGTTGGCATCAT+TGG - tig0045347:1091-1110 Msa1465610:intergenic 45.0%
GAAAAATGGAGAACAGACCC+GGG - tig0045347:1117-1136 Msa1465610:intergenic 45.0%
TGTCAGTATCATTCCGGTGT+CGG - tig0045347:1246-1265 Msa1465610:intergenic 45.0%
AGGTGAATCTGTTTGTGGAG+TGG + tig0045347:1542-1561 Msa1465610:intron 45.0%
GAATCTGTTTGTGGAGTGGA+TGG + tig0045347:1546-1565 Msa1465610:intron 45.0%
CATTAAACCAACACAGCGCT+TGG - tig0045347:1952-1971 Msa1465610:intergenic 45.0%
ATTTGCCCAAATGACCCACT+AGG - tig0045347:2385-2404 Msa1465610:intergenic 45.0%
! TGTCTATGATGGAGTTTCGC+CGG + tig0045347:2432-2451 Msa1465610:CDS 45.0%
CGTGCCTGCAAATACAAGTA+TGG - tig0045347:2535-2554 Msa1465610:intergenic 45.0%
TGAAGGATTATCCTGGGGAA+AGG - tig0045347:2593-2612 Msa1465610:intergenic 45.0%
ATCCTTCAAGTCGCTCAAAC+AGG + tig0045347:2691-2710 Msa1465610:CDS 45.0%
TACCTGTTTGAGCGACTTGA+AGG - tig0045347:2696-2715 Msa1465610:intergenic 45.0%
GTCACCAACAAACCATGTGT+TGG - tig0045347:3132-3151 Msa1465610:intergenic 45.0%
!! ATTTAAAAACCGGCTCGGAC+CGG - tig0045347:3269-3288 Msa1465610:intergenic 45.0%
!! CGAGCCGGTTTTTAAATCAC+TGG + tig0045347:3272-3291 Msa1465610:intron 45.0%
TGGAATACCCTCTGCATTAC+AGG + tig0045347:3767-3786 Msa1465610:CDS 45.0%
GGAATACCCTCTGCATTACA+GGG + tig0045347:3768-3787 Msa1465610:CDS 45.0%
CTTTCTCCCTGTAATGCAGA+GGG - tig0045347:3777-3796 Msa1465610:intergenic 45.0%
!!! GCGGGCCTTTGTTTTTTTCT+TGG + tig0045347:3958-3977 Msa1465610:three_prime_UTR 45.0%
GGGGATGACATCCAAAACTA+AGG - tig0045347:4176-4195 Msa1465610:intergenic 45.0%
TTTGGATGTCATCCCCACTT+TGG + tig0045347:4180-4199 Msa1465610:three_prime_UTR 45.0%
AGCTCGTGAATTCCAAAGTG+GGG - tig0045347:4195-4214 Msa1465610:intergenic 45.0%
GAAGCTCGTGAATTCCAAAG+TGG - tig0045347:4197-4216 Msa1465610:intergenic 45.0%
CGGGTGAAAAAACACAACAC+GGG - tig0045347:4442-4461 Msa1465610:intergenic 45.0%
ATGTGCACCCGTATATTACC+TGG + tig0045347:4493-4512 Msa1465610:three_prime_UTR 45.0%
! ATGCTTAACCTGCACTGACA+TGG + tig0045347:4673-4692 Msa1465610:three_prime_UTR 45.0%
GAGGTATGGAAGCTTGATAC+AGG - tig0045347:4772-4791 Msa1465610:intergenic 45.0%
!! ATTTAATGTAATTAATTAAT+TGG + tig0045347:754-773 Msa1465610:intron 5.0%
!! TTTAATGTAATTAATTAATT+GGG + tig0045347:755-774 Msa1465610:intron 5.0%
!!! AAAAAAAAGTAAAATTTTAA+TGG + tig0045347:1323-1342 Msa1465610:intron 5.0%
!! TTTATTGAATTTAAATTATT+TGG - tig0045347:2257-2276 Msa1465610:intergenic 5.0%
TGGTGTAGTGAGGGAGTGAT+GGG - tig0045347:327-346 Msa0052260:intergenic 50.0%
TTGGTGTAGTGAGGGAGTGA+TGG - tig0045347:328-347 Msa0052260:intergenic 50.0%
TTACCCTCTGTTGCCGGAAT+CGG + tig0045347:425-444 Msa1465610:five_prime_UTR 50.0%
TTTCCGATTCCGGCAACAGA+GGG - tig0045347:431-450 Msa1465610:intergenic 50.0%
CCGTTCATCGTTTCCGATTC+CGG - tig0045347:441-460 Msa1465610:intergenic 50.0%
CCGGAATCGGAAACGATGAA+CGG + tig0045347:438-457 Msa1465610:exon 50.0%
GAATCGGAAACGATGAACGG+CGG + tig0045347:441-460 Msa1465610:exon 50.0%
GAGGATGGATCGGAAGGAAA+CGG - tig0045347:472-491 Msa1465610:intergenic 50.0%
GTTAAGAGGTCTGTCGAGGA+TGG - tig0045347:487-506 Msa1465610:intergenic 50.0%
GTTGGTTAAGAGGTCTGTCG+AGG - tig0045347:491-510 Msa1465610:intergenic 50.0%
CTCTCATGCTCCATGGTTTC+CGG + tig0045347:665-684 Msa1465610:intron 50.0%
TGGAAGTTGTTCTCAGGAGC+CGG - tig0045347:687-706 Msa1465610:intergenic 50.0%
AAGACGACACGTGTTCGTAC+AGG + tig0045347:826-845 Msa1465610:intron 50.0%
AGACGACACGTGTTCGTACA+GGG + tig0045347:827-846 Msa1465610:intron 50.0%
GCCTTCCTGGAACAAATCAC+AGG + tig0045347:858-877 Msa1465610:CDS 50.0%
!! GCCTGTGATTTGTTCCAGGA+AGG - tig0045347:862-881 Msa1465610:intergenic 50.0%
!! GATCGCCTGTGATTTGTTCC+AGG - tig0045347:866-885 Msa1465610:intergenic 50.0%
TCTTCGGGATCCAAAGCCTT+CGG - tig0045347:1012-1031 Msa1465610:intergenic 50.0%
GGATCCCGAAGATACTGCTT+TGG + tig0045347:1020-1039 Msa1465610:CDS 50.0%
TCCGTGGGTCTTTCAGAAAC+AGG - tig0045347:1066-1085 Msa1465610:intergenic 50.0%
!! GTTGGCATCATTGGTTTCCG+TGG - tig0045347:1082-1101 Msa1465610:intergenic 50.0%
! TCATTCCGGTGTCGGAGTTA+GGG - tig0045347:1238-1257 Msa1465610:intergenic 50.0%
! ATCATTCCGGTGTCGGAGTT+AGG - tig0045347:1239-1258 Msa1465610:intergenic 50.0%
! TTGGAAGGAGTCTGGGTTAG+TGG + tig0045347:2164-2183 Msa1465610:intron 50.0%
! TGCACACCTAGTGGGTCATT+TGG + tig0045347:2376-2395 Msa1465610:CDS 50.0%
! GCACACCTAGTGGGTCATTT+GGG + tig0045347:2377-2396 Msa1465610:CDS 50.0%
TGATGGAGTTTCGCCGGATA+AGG + tig0045347:2438-2457 Msa1465610:CDS 50.0%
TTATCCTGGGGAAAGGAGGA+CGG - tig0045347:2586-2605 Msa1465610:intergenic 50.0%
AGGATTATCCTGGGGAAAGG+AGG - tig0045347:2590-2609 Msa1465610:intergenic 50.0%
CCAGGAACCGAAGGGATAAT+CGG - tig0045347:3241-3260 Msa1465610:intergenic 50.0%
CCTTTCTCCCTGTAATGCAG+AGG - tig0045347:3778-3797 Msa1465610:intergenic 50.0%
CCTCTGCATTACAGGGAGAA+AGG + tig0045347:3775-3794 Msa1465610:CDS 50.0%
! CTTAACCTGCACTGACATGG+TGG + tig0045347:4676-4695 Msa1465610:three_prime_UTR 50.0%
TCATACCACCATGTCAGTGC+AGG - tig0045347:4684-4703 Msa1465610:intergenic 50.0%
GGGTAAGTGGGACCATGTAC+AGG - tig0045347:411-430 Msa1465610:intergenic 55.0%
TCCCACTTACCCTCTGTTGC+CGG + tig0045347:419-438 Msa1465610:five_prime_UTR 55.0%
TCCGGCAACAGAGGGTAAGT+GGG - tig0045347:423-442 Msa1465610:intergenic 55.0%
TTCCGGCAACAGAGGGTAAG+TGG - tig0045347:424-443 Msa1465610:intergenic 55.0%
GTTTCCGATTCCGGCAACAG+AGG - tig0045347:432-451 Msa1465610:intergenic 55.0%
TCTGTCGAGGATGGATCGGA+AGG - tig0045347:478-497 Msa1465610:intergenic 55.0%
GAGGTCTGTCGAGGATGGAT+CGG - tig0045347:482-501 Msa1465610:intergenic 55.0%
CGGAAACCATGGAGCATGAG+AGG - tig0045347:667-686 Msa1465610:intergenic 55.0%
TTCTCAGGAGCCGGAAACCA+TGG - tig0045347:678-697 Msa1465610:intergenic 55.0%
CAAATCACAGGCGATCCAGC+AGG + tig0045347:870-889 Msa1465610:CDS 55.0%
GCCGGTGTATCATCGTCAGT+AGG - tig0045347:922-941 Msa1465610:intergenic 55.0%
! GATGATACACCGGCTACCGT+CGG + tig0045347:928-947 Msa1465610:CDS 55.0%
AATGGAGAACAGACCCGGGA+GGG - tig0045347:1113-1132 Msa1465610:intergenic 55.0%
AAATGGAGAACAGACCCGGG+AGG - tig0045347:1114-1133 Msa1465610:intergenic 55.0%
CGAAACCCTAACTCCGACAC+CGG + tig0045347:1230-1249 Msa1465610:intron 55.0%
! ACAGAGGGTGCACACCTAGT+GGG + tig0045347:2368-2387 Msa1465610:intron 55.0%
GGAGTTTCGCCGGATAAGGT+AGG + tig0045347:2442-2461 Msa1465610:intron 55.0%
CCGATTATCCCTTCGGTTCC+TGG + tig0045347:3238-3257 Msa1465610:intron 55.0%
CGGTTGAACCAGGAACCGAA+GGG - tig0045347:3249-3268 Msa1465610:intergenic 55.0%
CCTTCGGTTCCTGGTTCAAC+CGG + tig0045347:3247-3266 Msa1465610:intron 55.0%
CACAGCTCGTGATGCTGGTA+GGG + tig0045347:3801-3820 Msa1465610:CDS 55.0%
CACAACACGGGTACGAGTAC+TGG - tig0045347:4430-4449 Msa1465610:intergenic 55.0%
GTGTTCGTACAGGGATGCGC+AGG + tig0045347:836-855 Msa1465610:intron 60.0%
!! GTGGTGATGGCGGTGAATGG+CGG - tig0045347:968-987 Msa1465610:intergenic 60.0%
!! GTGGTGGTGATGGCGGTGAA+TGG - tig0045347:971-990 Msa1465610:intergenic 60.0%
AAAGCCTTCGGCGGAGGTTG+AGG - tig0045347:1000-1019 Msa1465610:intergenic 60.0%
TCAACCTCCGCCGAAGGCTT+TGG + tig0045347:999-1018 Msa1465610:CDS 60.0%
TCGGGATCCAAAGCCTTCGG+CGG - tig0045347:1009-1028 Msa1465610:intergenic 60.0%
GCCAACGTCGTTAACCCTCC+CGG + tig0045347:1096-1115 Msa1465610:CDS 60.0%
CCAACGTCGTTAACCCTCCC+GGG + tig0045347:1097-1116 Msa1465610:CDS 60.0%
! CACAGAGGGTGCACACCTAG+TGG + tig0045347:2367-2386 Msa1465610:intron 60.0%
ATGTCCGTCCTCCTTTCCCC+AGG + tig0045347:2579-2598 Msa1465610:CDS 60.0%
CCGGTTGAACCAGGAACCGA+AGG - tig0045347:3250-3269 Msa1465610:intergenic 60.0%
! GGAAGCACAGCTCGTGATGC+TGG + tig0045347:3796-3815 Msa1465610:CDS 60.0%
GCACAGCTCGTGATGCTGGT+AGG + tig0045347:3800-3819 Msa1465610:CDS 60.0%
ACACCAACGCCGACGGTAGC+CGG - tig0045347:940-959 Msa1465610:intergenic 65.0%
GGAGGAGACACCAACGCCGA+CGG - tig0045347:947-966 Msa1465610:intergenic 65.0%
!! GTGATGGCGGTGAATGGCGG+AGG - tig0045347:965-984 Msa1465610:intergenic 65.0%
!! GAGGGTGGTGGTGGTGATGG+CGG - tig0045347:978-997 Msa1465610:intergenic 65.0%
!! GAGGAGGGTGGTGGTGGTGA+TGG - tig0045347:981-1000 Msa1465610:intergenic 65.0%
! GAGGTTGAGGAGGGTGGTGG+TGG - tig0045347:987-1006 Msa1465610:intergenic 65.0%
CCTTCGGCGGAGGTTGAGGA+GGG - tig0045347:996-1015 Msa1465610:intergenic 65.0%
GGATCCAAAGCCTTCGGCGG+AGG - tig0045347:1006-1025 Msa1465610:intergenic 65.0%
CCCGGGAGGGTTAACGACGT+TGG - tig0045347:1100-1119 Msa1465610:intergenic 65.0%
AACTGGCGTGACCTCCCGTG+TGG - tig0045347:3177-3196 Msa1465610:intergenic 65.0%
CTGGTTCAACCGGTCCGAGC+CGG + tig0045347:3257-3276 Msa1465610:intron 65.0%
CAGGGATGCGCAGGCCTTCC+TGG + tig0045347:845-864 Msa1465610:intron 70.0%
! ACACCGGCTACCGTCGGCGT+TGG + tig0045347:934-953 Msa1465610:CDS 70.0%
GCGGAGGTTGAGGAGGGTGG+TGG - tig0045347:990-1009 Msa1465610:intergenic 70.0%
TCGGCGGAGGTTGAGGAGGG+TGG - tig0045347:993-1012 Msa1465610:intergenic 70.0%
CCCTCCTCAACCTCCGCCGA+AGG + tig0045347:993-1012 Msa1465610:CDS 70.0%
GCCTTCGGCGGAGGTTGAGG+AGG - tig0045347:997-1016 Msa1465610:intergenic 70.0%
! CGGCTCGGACCGGTTGAACC+AGG - tig0045347:3259-3278 Msa1465610:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0045347 gene 274 5000 274 ID=Msa1465610;Name=Msa1465610
tig0045347 mRNA 274 5000 274 ID=Msa1465610-mRNA-1;Parent=Msa1465610;Name=Msa1465610-mRNA-1;_AED=0.12;_eAED=0.12;_QI=159|1|1|1|0.8|0.66|6|1169|238
tig0045347 exon 274 354 274 ID=Msa1465610-mRNA-1:exon:24828;Parent=Msa1465610-mRNA-1
tig0045347 exon 375 573 375 ID=Msa1465610-mRNA-1:exon:24829;Parent=Msa1465610-mRNA-1
tig0045347 exon 848 1118 848 ID=Msa1465610-mRNA-1:exon:24830;Parent=Msa1465610-mRNA-1
tig0045347 exon 2372 2459 2372 ID=Msa1465610-mRNA-1:exon:24831;Parent=Msa1465610-mRNA-1
tig0045347 exon 2550 2712 2550 ID=Msa1465610-mRNA-1:exon:24832;Parent=Msa1465610-mRNA-1
tig0045347 exon 3758 5000 3758 ID=Msa1465610-mRNA-1:exon:24833;Parent=Msa1465610-mRNA-1
tig0045347 five_prime_UTR 274 354 274 ID=Msa1465610-mRNA-1:five_prime_utr;Parent=Msa1465610-mRNA-1
tig0045347 five_prime_UTR 375 452 375 ID=Msa1465610-mRNA-1:five_prime_utr;Parent=Msa1465610-mRNA-1
tig0045347 CDS 453 573 453 ID=Msa1465610-mRNA-1:cds;Parent=Msa1465610-mRNA-1
tig0045347 CDS 848 1118 848 ID=Msa1465610-mRNA-1:cds;Parent=Msa1465610-mRNA-1
tig0045347 CDS 2372 2459 2372 ID=Msa1465610-mRNA-1:cds;Parent=Msa1465610-mRNA-1
tig0045347 CDS 2550 2712 2550 ID=Msa1465610-mRNA-1:cds;Parent=Msa1465610-mRNA-1
tig0045347 CDS 3758 3831 3758 ID=Msa1465610-mRNA-1:cds;Parent=Msa1465610-mRNA-1
tig0045347 three_prime_UTR 3832 5000 3832 ID=Msa1465610-mRNA-1:three_prime_utr;Parent=Msa1465610-mRNA-1
Gene Sequence

>Msa1465610

ATGAACGGCGGAAGCACCGTTTCCTTCCGATCCATCCTCGACAGACCTCTTAACCAACTCACTGAAGATGACATTTCTCAACTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGATAAAGGGATGCGCAGGCCTTCCTGGAACAAATCACAGGCGATCCAGCAGGTGATTTCTCTCAAAGCGCTTCTAGAACCTACTGACGATGATACACCGGCTACCGTCGGCGTTGGTGTCTCCTCCGCCATTCACCGCCATCACCACCACCACCCTCCTCAACCTCCGCCGAAGGCTTTGGATCCCGAAGATACTGCTTTGGGACTTCAGAAATCTACTTCACCTGTTTCTGAAAGACCCACGGAAACCAATGATGCCAACGTCGTTAACCCTCCCGGAGGGTGCACACCTAGTGGGTCATTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTTTCGCCGGATAAGGCACGATCAATCATGCAGCTTGCTGCTGCATGTCCGTCCTCCTTTCCCCAGGATAATCCTTCAAATAAAAATGCAGCAGTTTGGGCTTCTCCTTGCAACTTACCTATTGATAAAGAAGTCTTCTTCCCTACTGACACAACAATCCTTCAAGTCGCTCAAACAGATAAAATGGTGGAATACCCTCTGCATTACAGGGAGAAAGGAAGCACAGCTCGTGATGCTGGTAGGGACAATTAA

Protein sequence

>Msa1465610

MNGGSTVSFRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDTPATVGVGVSSAIHRHHHHHPPQPPPKALDPEDTALGLQKSTSPVSERPTETNDANVVNPPGGCTPSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLAAACPSSFPQDNPSNKNAAVWASPCNLPIDKEVFFPTDTTILQVAQTDKMVEYPLHYREKGSTARDAGRDN*