AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648240 MtrunA17_Chr4g0040281 89.286 56 6 0 1 56 1 56 6.55e-30 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648240 AT1G65032.1 63.095 84 31 0 3 86 2 85 3.70e-34 112

Find 78 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAGATCAAATAAAATTT+TGG 0.085895 4_3:-54692013 None:intergenic
CCTAATTTCAAATTCTAATT+AGG 0.130089 4_3:-54692866 None:intergenic
CACACGTGTAGAACTAATTT+TGG 0.145357 4_3:+54693149 Msa0648240:three_prime_UTR
CTCCAAAGTAGAACTGATTT+TGG 0.177698 4_3:+54693180 Msa0648240:three_prime_UTR
CCTAATTAGAATTTGAAATT+AGG 0.182424 4_3:+54692866 Msa0648240:three_prime_UTR
AAACACCAACCTTGAATTCT+AGG 0.234776 4_3:-54693040 None:intergenic
GGTCGGGACCGAGAAGAATT+AGG 0.244026 4_3:-54692053 None:intergenic
TAAATGAAAGTTTAACTTAA+GGG 0.280559 4_3:+54692917 Msa0648240:three_prime_UTR
GTTGTTTATATGTAAGAAAA+AGG 0.301202 4_3:+54692729 Msa0648240:three_prime_UTR
AAGGCATACGGTATTCAAAA+TGG 0.318968 4_3:+54692748 Msa0648240:three_prime_UTR
CTGAGGTACGTGCAATGTTT+TGG 0.338129 4_3:+54692529 Msa0648240:CDS
AGTATTCAGCAGTATCAATT+AGG 0.338566 4_3:-54692590 None:intergenic
GAATGGGAAAGGGTTTGATA+TGG 0.351995 4_3:+54692385 Msa0648240:intron
GCTTCAAGTAGAATCAATTA+TGG 0.363240 4_3:-54693205 None:intergenic
CCACCGGAGAGGGGTGGCGG+CGG 0.375973 4_3:-54692140 None:intergenic
CTATTGACTCGGTGTATGTT+TGG 0.378230 4_3:+54693096 Msa0648240:three_prime_UTR
GGACCACCGGAGAGGGGTGG+CGG 0.379277 4_3:-54692143 None:intergenic
ATAAATGAAAGTTTAACTTA+AGG 0.387854 4_3:+54692916 Msa0648240:three_prime_UTR
CTAAATTGCGACGAGGGAAA+TGG 0.406059 4_3:-54692673 None:intergenic
CTCATTATAAGCATACAATA+AGG 0.424983 4_3:-54692836 None:intergenic
AACATACTCTACATTGGATT+CGG 0.431126 4_3:-54692799 None:intergenic
CAAAATCAGTTCTACTTTGG+AGG 0.436395 4_3:-54693179 None:intergenic
TGCGTGGGTGTGGCGGTGTA+CGG 0.436481 4_3:-54692167 None:intergenic
CAGAGGATCTGCATAGGAAT+AGG 0.437557 4_3:+54692415 Msa0648240:CDS
ACTGACATTCGCTGCAAGAC+TGG 0.449305 4_3:+54692497 Msa0648240:CDS
GTCGGGACCGAGAAGAATTA+GGG 0.450997 4_3:-54692052 None:intergenic
AGAAAATCCCTAATTCTTCT+CGG 0.457564 4_3:+54692045 Msa0648240:five_prime_UTR
AGGGTGTATTGTTCATAACT+TGG 0.458629 4_3:+54692936 Msa0648240:three_prime_UTR
GAAAGAAAACGGTGTGCAAC+TGG 0.460829 4_3:-54692074 None:intergenic
TGAACATGGCCTAGAATTCA+AGG 0.461392 4_3:+54693031 Msa0648240:three_prime_UTR
CCCACGCAGTTCACCTGTCC+AGG 0.467045 4_3:+54692182 Msa0648240:five_prime_UTR
AGCCAAAATCAGTTCTACTT+TGG 0.467535 4_3:-54693182 None:intergenic
CACCGGAGAGGGGTGGCGGC+GGG 0.473404 4_3:-54692139 None:intergenic
AAGCTGACTTCTTCCTCGAC+AGG 0.474724 4_3:-54692972 None:intergenic
GTTACAAATATACCATTTGA+AGG 0.482028 4_3:+54691945 Msa0648240:five_prime_UTR
GGAAATGGAAGGTGTTGATC+AGG 0.482869 4_3:-54692658 None:intergenic
AAAACGGTGTGCAACTGGTC+GGG 0.487432 4_3:-54692069 None:intergenic
AACCCGCCGCCACCCCTCTC+CGG 0.490910 4_3:+54692137 Msa0648240:five_prime_UTR
TTCTTCCTCGACAGGAAGTC+CGG 0.494399 4_3:-54692964 None:intergenic
ACAGGTGAACTGCGTGGGTG+TGG 0.504800 4_3:-54692177 None:intergenic
GGTGTGTTGCAGAATGGGAA+AGG 0.507863 4_3:+54692374 Msa0648240:intron
AAGCTTAACATACTCTACAT+TGG 0.508834 4_3:-54692805 None:intergenic
AATGGGAAAGGGTTTGATAT+GGG 0.518936 4_3:+54692386 Msa0648240:intron
TGTTCATAACTTGGTATGGC+CGG 0.519381 4_3:+54692945 Msa0648240:three_prime_UTR
TTTGATATGGGCGACGGCAG+AGG 0.527398 4_3:+54692398 Msa0648240:CDS
GTATTGTTCATAACTTGGTA+TGG 0.536066 4_3:+54692941 Msa0648240:three_prime_UTR
GTGTGTTGCAGAATGGGAAA+GGG 0.536633 4_3:+54692375 Msa0648240:intron
AATAGGAGACAAACCTGGAC+AGG 0.559482 4_3:-54692195 None:intergenic
TTCATACTAAATTGCGACGA+GGG 0.560118 4_3:-54692679 None:intergenic
GGCGGTGTACGGAGGACCAC+CGG 0.575849 4_3:-54692156 None:intergenic
AACAAGGATGAAGCTGACAT+TGG 0.578116 4_3:-54692999 None:intergenic
GTACGGAGGACCACCGGAGA+GGG 0.582473 4_3:-54692150 None:intergenic
CAAAATTAGTTCTACACGTG+TGG 0.592526 4_3:-54693148 None:intergenic
GCGAATGTCAGTGGCAACGA+AGG 0.598642 4_3:-54692486 None:intergenic
TTTGGGTGGGTTCTGATGAA+CGG 0.599950 4_3:+54692547 Msa0648240:CDS
TACGGAGGACCACCGGAGAG+GGG 0.608279 4_3:-54692149 None:intergenic
CCGCCGCCACCCCTCTCCGG+TGG 0.612146 4_3:+54692140 Msa0648240:five_prime_UTR
GAAAACGGTGTGCAACTGGT+CGG 0.615203 4_3:-54692070 None:intergenic
GGTGAACTGCGTGGGTGTGG+CGG 0.621354 4_3:-54692174 None:intergenic
CGACGGCAGAGGATCTGCAT+AGG 0.624223 4_3:+54692409 Msa0648240:CDS
CTACATTGGATTCGGCTCGT+AGG 0.624831 4_3:-54692791 None:intergenic
GGAGGACCACCGGAGAGGGG+TGG 0.625187 4_3:-54692146 None:intergenic
CATGGCCTAGAATTCAAGGT+TGG 0.625791 4_3:+54693035 Msa0648240:three_prime_UTR
AAAGGGTTTGATATGGGCGA+CGG 0.633143 4_3:+54692392 Msa0648240:CDS
AGTCTTGCAGCGAATGTCAG+TGG 0.636620 4_3:-54692495 None:intergenic
GTTTATTGAAGCTATTGACT+CGG 0.637325 4_3:+54693085 Msa0648240:three_prime_UTR
GTGGGTGTGGCGGTGTACGG+AGG 0.650747 4_3:-54692164 None:intergenic
TTGTTGTAATGTTATGAACA+TGG 0.656274 4_3:+54693017 Msa0648240:three_prime_UTR
TATGGCCGGACTTCCTGTCG+AGG 0.663064 4_3:+54692959 Msa0648240:three_prime_UTR
TGTACGGAGGACCACCGGAG+AGG 0.664857 4_3:-54692151 None:intergenic
CCTGGACAGGTGAACTGCGT+GGG 0.679204 4_3:-54692182 None:intergenic
ACCTGGACAGGTGAACTGCG+TGG 0.687436 4_3:-54692183 None:intergenic
ATTGCGACGAGGGAAATGGA+AGG 0.698583 4_3:-54692669 None:intergenic
AAGACTGGCGAAGAAAGCTG+AGG 0.702682 4_3:+54692512 Msa0648240:CDS
GTTCATACTAAATTGCGACG+AGG 0.703043 4_3:-54692680 None:intergenic
GATCAGGTAATGTGACGAGG+AGG 0.706235 4_3:-54692642 None:intergenic
GTTGATCAGGTAATGTGACG+AGG 0.712528 4_3:-54692645 None:intergenic
ATGTTCATAACATTACAACA+AGG 0.726701 4_3:-54693015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAACAAAAATATAAATAAA+AGG + chr4_3:54691914-54691933 Msa0648240:five_prime_UTR 10.0%
!!! TATTTTTATTGTTTTTTACA+TGG - chr4_3:54691972-54691991 None:intergenic 10.0%
!!! AATAGATCAAATAAAATTTT+GGG - chr4_3:54692015-54692034 None:intergenic 10.0%
!! GAAACAAAAATATAAATAAA+AGG + chr4_3:54691914-54691933 Msa0648240:five_prime_UTR 10.0%
!!! TATTTTTATTGTTTTTTACA+TGG - chr4_3:54691972-54691991 None:intergenic 10.0%
!!! AATAGATCAAATAAAATTTT+GGG - chr4_3:54692015-54692034 None:intergenic 10.0%
!!! TTTTATGTTTGTAATTGTTT+GGG - chr4_3:54691884-54691903 None:intergenic 15.0%
!!! TTTTTATGTTTGTAATTGTT+TGG - chr4_3:54691885-54691904 None:intergenic 15.0%
!!! ATAAAATTTTGGGATAAAAA+TGG - chr4_3:54692005-54692024 None:intergenic 15.0%
!!! CAATAGATCAAATAAAATTT+TGG - chr4_3:54692016-54692035 None:intergenic 15.0%
!!! ATAAATGAAAGTTTAACTTA+AGG + chr4_3:54692916-54692935 Msa0648240:three_prime_UTR 15.0%
!!! TAAATGAAAGTTTAACTTAA+GGG + chr4_3:54692917-54692936 Msa0648240:three_prime_UTR 15.0%
!!! TTTTATGTTTGTAATTGTTT+GGG - chr4_3:54691884-54691903 None:intergenic 15.0%
!!! TTTTTATGTTTGTAATTGTT+TGG - chr4_3:54691885-54691904 None:intergenic 15.0%
!!! ATAAAATTTTGGGATAAAAA+TGG - chr4_3:54692005-54692024 None:intergenic 15.0%
!!! CAATAGATCAAATAAAATTT+TGG - chr4_3:54692016-54692035 None:intergenic 15.0%
!!! ATAAATGAAAGTTTAACTTA+AGG + chr4_3:54692916-54692935 Msa0648240:three_prime_UTR 15.0%
!!! TAAATGAAAGTTTAACTTAA+GGG + chr4_3:54692917-54692936 Msa0648240:three_prime_UTR 15.0%
!! CAAATTTCATAGAAAATAAC+TGG - chr4_3:54692232-54692251 None:intergenic 20.0%
!!! CAGTTATTTTCTATGAAATT+TGG + chr4_3:54692230-54692249 Msa0648240:intron 20.0%
!!! CTTAAATGCATTTTCTTATT+AGG + chr4_3:54692268-54692287 Msa0648240:intron 20.0%
!! TTTCTGTTTAAACTAAAGTT+TGG + chr4_3:54692353-54692372 Msa0648240:intron 20.0%
!!! TGCAAATCATGATATTTTTT+TGG + chr4_3:54692707-54692726 Msa0648240:three_prime_UTR 20.0%
!! GTTGTTTATATGTAAGAAAA+AGG + chr4_3:54692729-54692748 Msa0648240:three_prime_UTR 20.0%
!! CCTAATTTCAAATTCTAATT+AGG - chr4_3:54692869-54692888 None:intergenic 20.0%
!!! CCTAATTAGAATTTGAAATT+AGG + chr4_3:54692866-54692885 Msa0648240:three_prime_UTR 20.0%
!! CAAATTTCATAGAAAATAAC+TGG - chr4_3:54692232-54692251 None:intergenic 20.0%
!!! CAGTTATTTTCTATGAAATT+TGG + chr4_3:54692230-54692249 Msa0648240:intron 20.0%
!!! CTTAAATGCATTTTCTTATT+AGG + chr4_3:54692268-54692287 Msa0648240:intron 20.0%
!! TTTCTGTTTAAACTAAAGTT+TGG + chr4_3:54692353-54692372 Msa0648240:intron 20.0%
!!! TGCAAATCATGATATTTTTT+TGG + chr4_3:54692707-54692726 Msa0648240:three_prime_UTR 20.0%
!! GTTGTTTATATGTAAGAAAA+AGG + chr4_3:54692729-54692748 Msa0648240:three_prime_UTR 20.0%
!! CCTAATTTCAAATTCTAATT+AGG - chr4_3:54692869-54692888 None:intergenic 20.0%
!!! CCTAATTAGAATTTGAAATT+AGG + chr4_3:54692866-54692885 Msa0648240:three_prime_UTR 20.0%
! GTTACAAATATACCATTTGA+AGG + chr4_3:54691945-54691964 Msa0648240:five_prime_UTR 25.0%
! AATGCATACATCAAGTTAAT+AGG - chr4_3:54692328-54692347 None:intergenic 25.0%
!! ATATGTAAGAAAAAGGCATA+CGG + chr4_3:54692736-54692755 Msa0648240:three_prime_UTR 25.0%
! CTCATTATAAGCATACAATA+AGG - chr4_3:54692839-54692858 None:intergenic 25.0%
! ATGTTCATAACATTACAACA+AGG - chr4_3:54693018-54693037 None:intergenic 25.0%
! TTGTTGTAATGTTATGAACA+TGG + chr4_3:54693017-54693036 Msa0648240:three_prime_UTR 25.0%
! GTTACAAATATACCATTTGA+AGG + chr4_3:54691945-54691964 Msa0648240:five_prime_UTR 25.0%
! AATGCATACATCAAGTTAAT+AGG - chr4_3:54692328-54692347 None:intergenic 25.0%
!! ATATGTAAGAAAAAGGCATA+CGG + chr4_3:54692736-54692755 Msa0648240:three_prime_UTR 25.0%
! CTCATTATAAGCATACAATA+AGG - chr4_3:54692839-54692858 None:intergenic 25.0%
! ATGTTCATAACATTACAACA+AGG - chr4_3:54693018-54693037 None:intergenic 25.0%
! TTGTTGTAATGTTATGAACA+TGG + chr4_3:54693017-54693036 Msa0648240:three_prime_UTR 25.0%
! TTTTTACATGGTCCTTCAAA+TGG - chr4_3:54691960-54691979 None:intergenic 30.0%
AGAAAATCCCTAATTCTTCT+CGG + chr4_3:54692045-54692064 Msa0648240:five_prime_UTR 30.0%
! CTGTTTTGTGAGAAAGAAAA+CGG - chr4_3:54692088-54692107 None:intergenic 30.0%
TTCATAGAAAATAACTGGAC+AGG - chr4_3:54692227-54692246 None:intergenic 30.0%
!! TTTTCTATGAAATTTGGAGC+TGG + chr4_3:54692236-54692255 Msa0648240:intron 30.0%
AGTATTCAGCAGTATCAATT+AGG - chr4_3:54692593-54692612 None:intergenic 30.0%
! TCTCTATCTTTTCTCAAGAA+AGG + chr4_3:54692612-54692631 Msa0648240:CDS 30.0%
AACATACTCTACATTGGATT+CGG - chr4_3:54692802-54692821 None:intergenic 30.0%
AAGCTTAACATACTCTACAT+TGG - chr4_3:54692808-54692827 None:intergenic 30.0%
GTATTGTTCATAACTTGGTA+TGG + chr4_3:54692941-54692960 Msa0648240:three_prime_UTR 30.0%
! GTTTATTGAAGCTATTGACT+CGG + chr4_3:54693085-54693104 Msa0648240:three_prime_UTR 30.0%
!! AATTTTGACGGATCTATAAG+TGG - chr4_3:54693124-54693143 None:intergenic 30.0%
GCTTCAAGTAGAATCAATTA+TGG - chr4_3:54693208-54693227 None:intergenic 30.0%
! TTTTTACATGGTCCTTCAAA+TGG - chr4_3:54691960-54691979 None:intergenic 30.0%
AGAAAATCCCTAATTCTTCT+CGG + chr4_3:54692045-54692064 Msa0648240:five_prime_UTR 30.0%
! CTGTTTTGTGAGAAAGAAAA+CGG - chr4_3:54692088-54692107 None:intergenic 30.0%
TTCATAGAAAATAACTGGAC+AGG - chr4_3:54692227-54692246 None:intergenic 30.0%
!! TTTTCTATGAAATTTGGAGC+TGG + chr4_3:54692236-54692255 Msa0648240:intron 30.0%
AGTATTCAGCAGTATCAATT+AGG - chr4_3:54692593-54692612 None:intergenic 30.0%
! TCTCTATCTTTTCTCAAGAA+AGG + chr4_3:54692612-54692631 Msa0648240:CDS 30.0%
AACATACTCTACATTGGATT+CGG - chr4_3:54692802-54692821 None:intergenic 30.0%
AAGCTTAACATACTCTACAT+TGG - chr4_3:54692808-54692827 None:intergenic 30.0%
GTATTGTTCATAACTTGGTA+TGG + chr4_3:54692941-54692960 Msa0648240:three_prime_UTR 30.0%
! GTTTATTGAAGCTATTGACT+CGG + chr4_3:54693085-54693104 Msa0648240:three_prime_UTR 30.0%
!! AATTTTGACGGATCTATAAG+TGG - chr4_3:54693124-54693143 None:intergenic 30.0%
GCTTCAAGTAGAATCAATTA+TGG - chr4_3:54693208-54693227 None:intergenic 30.0%
AATGGGAAAGGGTTTGATAT+GGG + chr4_3:54692386-54692405 Msa0648240:intron 35.0%
TTCATACTAAATTGCGACGA+GGG - chr4_3:54692682-54692701 None:intergenic 35.0%
AAGGCATACGGTATTCAAAA+TGG + chr4_3:54692748-54692767 Msa0648240:three_prime_UTR 35.0%
AGGGTGTATTGTTCATAACT+TGG + chr4_3:54692936-54692955 Msa0648240:three_prime_UTR 35.0%
AAACACCAACCTTGAATTCT+AGG - chr4_3:54693043-54693062 None:intergenic 35.0%
!!! TCAAGGTTGGTGTTTTAGTT+TGG + chr4_3:54693048-54693067 Msa0648240:three_prime_UTR 35.0%
!!! CAAGGTTGGTGTTTTAGTTT+GGG + chr4_3:54693049-54693068 Msa0648240:three_prime_UTR 35.0%
! ACGTGTGGAATCAATTTTGA+CGG - chr4_3:54693136-54693155 None:intergenic 35.0%
!! CAAAATTAGTTCTACACGTG+TGG - chr4_3:54693151-54693170 None:intergenic 35.0%
! CACACGTGTAGAACTAATTT+TGG + chr4_3:54693149-54693168 Msa0648240:three_prime_UTR 35.0%
CAAAATCAGTTCTACTTTGG+AGG - chr4_3:54693182-54693201 None:intergenic 35.0%
!! CTCCAAAGTAGAACTGATTT+TGG + chr4_3:54693180-54693199 Msa0648240:three_prime_UTR 35.0%
AGCCAAAATCAGTTCTACTT+TGG - chr4_3:54693185-54693204 None:intergenic 35.0%
AATGGGAAAGGGTTTGATAT+GGG + chr4_3:54692386-54692405 Msa0648240:intron 35.0%
TTCATACTAAATTGCGACGA+GGG - chr4_3:54692682-54692701 None:intergenic 35.0%
AAGGCATACGGTATTCAAAA+TGG + chr4_3:54692748-54692767 Msa0648240:three_prime_UTR 35.0%
AGGGTGTATTGTTCATAACT+TGG + chr4_3:54692936-54692955 Msa0648240:three_prime_UTR 35.0%
AAACACCAACCTTGAATTCT+AGG - chr4_3:54693043-54693062 None:intergenic 35.0%
!!! TCAAGGTTGGTGTTTTAGTT+TGG + chr4_3:54693048-54693067 Msa0648240:three_prime_UTR 35.0%
!!! CAAGGTTGGTGTTTTAGTTT+GGG + chr4_3:54693049-54693068 Msa0648240:three_prime_UTR 35.0%
! ACGTGTGGAATCAATTTTGA+CGG - chr4_3:54693136-54693155 None:intergenic 35.0%
!! CAAAATTAGTTCTACACGTG+TGG - chr4_3:54693151-54693170 None:intergenic 35.0%
! CACACGTGTAGAACTAATTT+TGG + chr4_3:54693149-54693168 Msa0648240:three_prime_UTR 35.0%
CAAAATCAGTTCTACTTTGG+AGG - chr4_3:54693182-54693201 None:intergenic 35.0%
!! CTCCAAAGTAGAACTGATTT+TGG + chr4_3:54693180-54693199 Msa0648240:three_prime_UTR 35.0%
AGCCAAAATCAGTTCTACTT+TGG - chr4_3:54693185-54693204 None:intergenic 35.0%
GAAGAAATAGGAGACAAACC+TGG - chr4_3:54692203-54692222 None:intergenic 40.0%
AACTGGACAGGTGAAGAAAT+AGG - chr4_3:54692215-54692234 None:intergenic 40.0%
!! AAGTTTGGTGTGTTGCAGAA+TGG + chr4_3:54692368-54692387 Msa0648240:intron 40.0%
!! AGTTTGGTGTGTTGCAGAAT+GGG + chr4_3:54692369-54692388 Msa0648240:intron 40.0%
GAATGGGAAAGGGTTTGATA+TGG + chr4_3:54692385-54692404 Msa0648240:intron 40.0%
! TGAGGTACGTGCAATGTTTT+GGG + chr4_3:54692530-54692549 Msa0648240:CDS 40.0%
GTTCATACTAAATTGCGACG+AGG - chr4_3:54692683-54692702 None:intergenic 40.0%
TGTTCATAACTTGGTATGGC+CGG + chr4_3:54692945-54692964 Msa0648240:three_prime_UTR 40.0%
AACAAGGATGAAGCTGACAT+TGG - chr4_3:54693002-54693021 None:intergenic 40.0%
TGAACATGGCCTAGAATTCA+AGG + chr4_3:54693031-54693050 Msa0648240:three_prime_UTR 40.0%
!! CTATTGACTCGGTGTATGTT+TGG + chr4_3:54693096-54693115 Msa0648240:three_prime_UTR 40.0%
GAAGAAATAGGAGACAAACC+TGG - chr4_3:54692203-54692222 None:intergenic 40.0%
AACTGGACAGGTGAAGAAAT+AGG - chr4_3:54692215-54692234 None:intergenic 40.0%
!! AAGTTTGGTGTGTTGCAGAA+TGG + chr4_3:54692368-54692387 Msa0648240:intron 40.0%
!! AGTTTGGTGTGTTGCAGAAT+GGG + chr4_3:54692369-54692388 Msa0648240:intron 40.0%
GAATGGGAAAGGGTTTGATA+TGG + chr4_3:54692385-54692404 Msa0648240:intron 40.0%
! TGAGGTACGTGCAATGTTTT+GGG + chr4_3:54692530-54692549 Msa0648240:CDS 40.0%
GTTCATACTAAATTGCGACG+AGG - chr4_3:54692683-54692702 None:intergenic 40.0%
TGTTCATAACTTGGTATGGC+CGG + chr4_3:54692945-54692964 Msa0648240:three_prime_UTR 40.0%
AACAAGGATGAAGCTGACAT+TGG - chr4_3:54693002-54693021 None:intergenic 40.0%
TGAACATGGCCTAGAATTCA+AGG + chr4_3:54693031-54693050 Msa0648240:three_prime_UTR 40.0%
!! CTATTGACTCGGTGTATGTT+TGG + chr4_3:54693096-54693115 Msa0648240:three_prime_UTR 40.0%
GAAAGAAAACGGTGTGCAAC+TGG - chr4_3:54692077-54692096 None:intergenic 45.0%
AATAGGAGACAAACCTGGAC+AGG - chr4_3:54692198-54692217 None:intergenic 45.0%
GTGTGTTGCAGAATGGGAAA+GGG + chr4_3:54692375-54692394 Msa0648240:intron 45.0%
AAAGGGTTTGATATGGGCGA+CGG + chr4_3:54692392-54692411 Msa0648240:CDS 45.0%
CAGAGGATCTGCATAGGAAT+AGG + chr4_3:54692415-54692434 Msa0648240:CDS 45.0%
! CTGAGGTACGTGCAATGTTT+TGG + chr4_3:54692529-54692548 Msa0648240:CDS 45.0%
!! GTACGTGCAATGTTTTGGGT+GGG + chr4_3:54692534-54692553 Msa0648240:CDS 45.0%
! TTTGGGTGGGTTCTGATGAA+CGG + chr4_3:54692547-54692566 Msa0648240:CDS 45.0%
GTTGATCAGGTAATGTGACG+AGG - chr4_3:54692648-54692667 None:intergenic 45.0%
!! GGAAATGGAAGGTGTTGATC+AGG - chr4_3:54692661-54692680 None:intergenic 45.0%
CTAAATTGCGACGAGGGAAA+TGG - chr4_3:54692676-54692695 None:intergenic 45.0%
CATGGCCTAGAATTCAAGGT+TGG + chr4_3:54693035-54693054 Msa0648240:three_prime_UTR 45.0%
GAAAGAAAACGGTGTGCAAC+TGG - chr4_3:54692077-54692096 None:intergenic 45.0%
AATAGGAGACAAACCTGGAC+AGG - chr4_3:54692198-54692217 None:intergenic 45.0%
GTGTGTTGCAGAATGGGAAA+GGG + chr4_3:54692375-54692394 Msa0648240:intron 45.0%
AAAGGGTTTGATATGGGCGA+CGG + chr4_3:54692392-54692411 Msa0648240:CDS 45.0%
CAGAGGATCTGCATAGGAAT+AGG + chr4_3:54692415-54692434 Msa0648240:CDS 45.0%
! CTGAGGTACGTGCAATGTTT+TGG + chr4_3:54692529-54692548 Msa0648240:CDS 45.0%
!! GTACGTGCAATGTTTTGGGT+GGG + chr4_3:54692534-54692553 Msa0648240:CDS 45.0%
! TTTGGGTGGGTTCTGATGAA+CGG + chr4_3:54692547-54692566 Msa0648240:CDS 45.0%
GTTGATCAGGTAATGTGACG+AGG - chr4_3:54692648-54692667 None:intergenic 45.0%
!! GGAAATGGAAGGTGTTGATC+AGG - chr4_3:54692661-54692680 None:intergenic 45.0%
CTAAATTGCGACGAGGGAAA+TGG - chr4_3:54692676-54692695 None:intergenic 45.0%
CATGGCCTAGAATTCAAGGT+TGG + chr4_3:54693035-54693054 Msa0648240:three_prime_UTR 45.0%
GTCGGGACCGAGAAGAATTA+GGG - chr4_3:54692055-54692074 None:intergenic 50.0%
AAAACGGTGTGCAACTGGTC+GGG - chr4_3:54692072-54692091 None:intergenic 50.0%
GAAAACGGTGTGCAACTGGT+CGG - chr4_3:54692073-54692092 None:intergenic 50.0%
GGTGTGTTGCAGAATGGGAA+AGG + chr4_3:54692374-54692393 Msa0648240:intron 50.0%
AGTCTTGCAGCGAATGTCAG+TGG - chr4_3:54692498-54692517 None:intergenic 50.0%
ACTGACATTCGCTGCAAGAC+TGG + chr4_3:54692497-54692516 Msa0648240:CDS 50.0%
AAGACTGGCGAAGAAAGCTG+AGG + chr4_3:54692512-54692531 Msa0648240:CDS 50.0%
!! GGTACGTGCAATGTTTTGGG+TGG + chr4_3:54692533-54692552 Msa0648240:CDS 50.0%
GATCAGGTAATGTGACGAGG+AGG - chr4_3:54692645-54692664 None:intergenic 50.0%
ATTGCGACGAGGGAAATGGA+AGG - chr4_3:54692672-54692691 None:intergenic 50.0%
! CTACATTGGATTCGGCTCGT+AGG - chr4_3:54692794-54692813 None:intergenic 50.0%
TTCTTCCTCGACAGGAAGTC+CGG - chr4_3:54692967-54692986 None:intergenic 50.0%
! AAGCTGACTTCTTCCTCGAC+AGG - chr4_3:54692975-54692994 None:intergenic 50.0%
GTCGGGACCGAGAAGAATTA+GGG - chr4_3:54692055-54692074 None:intergenic 50.0%
AAAACGGTGTGCAACTGGTC+GGG - chr4_3:54692072-54692091 None:intergenic 50.0%
GAAAACGGTGTGCAACTGGT+CGG - chr4_3:54692073-54692092 None:intergenic 50.0%
GGTGTGTTGCAGAATGGGAA+AGG + chr4_3:54692374-54692393 Msa0648240:intron 50.0%
AGTCTTGCAGCGAATGTCAG+TGG - chr4_3:54692498-54692517 None:intergenic 50.0%
ACTGACATTCGCTGCAAGAC+TGG + chr4_3:54692497-54692516 Msa0648240:CDS 50.0%
AAGACTGGCGAAGAAAGCTG+AGG + chr4_3:54692512-54692531 Msa0648240:CDS 50.0%
!! GGTACGTGCAATGTTTTGGG+TGG + chr4_3:54692533-54692552 Msa0648240:CDS 50.0%
GATCAGGTAATGTGACGAGG+AGG - chr4_3:54692645-54692664 None:intergenic 50.0%
ATTGCGACGAGGGAAATGGA+AGG - chr4_3:54692672-54692691 None:intergenic 50.0%
! CTACATTGGATTCGGCTCGT+AGG - chr4_3:54692794-54692813 None:intergenic 50.0%
TTCTTCCTCGACAGGAAGTC+CGG - chr4_3:54692967-54692986 None:intergenic 50.0%
! AAGCTGACTTCTTCCTCGAC+AGG - chr4_3:54692975-54692994 None:intergenic 50.0%
GGTCGGGACCGAGAAGAATT+AGG - chr4_3:54692056-54692075 None:intergenic 55.0%
TTTGATATGGGCGACGGCAG+AGG + chr4_3:54692398-54692417 Msa0648240:CDS 55.0%
GCGAATGTCAGTGGCAACGA+AGG - chr4_3:54692489-54692508 None:intergenic 55.0%
GGTCGGGACCGAGAAGAATT+AGG - chr4_3:54692056-54692075 None:intergenic 55.0%
TTTGATATGGGCGACGGCAG+AGG + chr4_3:54692398-54692417 Msa0648240:CDS 55.0%
GCGAATGTCAGTGGCAACGA+AGG - chr4_3:54692489-54692508 None:intergenic 55.0%
ACAGGTGAACTGCGTGGGTG+TGG - chr4_3:54692180-54692199 None:intergenic 60.0%
CCTGGACAGGTGAACTGCGT+GGG - chr4_3:54692185-54692204 None:intergenic 60.0%
ACCTGGACAGGTGAACTGCG+TGG - chr4_3:54692186-54692205 None:intergenic 60.0%
CGACGGCAGAGGATCTGCAT+AGG + chr4_3:54692409-54692428 Msa0648240:CDS 60.0%
TATGGCCGGACTTCCTGTCG+AGG + chr4_3:54692959-54692978 Msa0648240:three_prime_UTR 60.0%
ACAGGTGAACTGCGTGGGTG+TGG - chr4_3:54692180-54692199 None:intergenic 60.0%
CCTGGACAGGTGAACTGCGT+GGG - chr4_3:54692185-54692204 None:intergenic 60.0%
ACCTGGACAGGTGAACTGCG+TGG - chr4_3:54692186-54692205 None:intergenic 60.0%
CGACGGCAGAGGATCTGCAT+AGG + chr4_3:54692409-54692428 Msa0648240:CDS 60.0%
TATGGCCGGACTTCCTGTCG+AGG + chr4_3:54692959-54692978 Msa0648240:three_prime_UTR 60.0%
TACGGAGGACCACCGGAGAG+GGG - chr4_3:54692152-54692171 None:intergenic 65.0%
GTACGGAGGACCACCGGAGA+GGG - chr4_3:54692153-54692172 None:intergenic 65.0%
TGTACGGAGGACCACCGGAG+AGG - chr4_3:54692154-54692173 None:intergenic 65.0%
TGCGTGGGTGTGGCGGTGTA+CGG - chr4_3:54692170-54692189 None:intergenic 65.0%
GGTGAACTGCGTGGGTGTGG+CGG - chr4_3:54692177-54692196 None:intergenic 65.0%
CCCACGCAGTTCACCTGTCC+AGG + chr4_3:54692182-54692201 Msa0648240:five_prime_UTR 65.0%
TACGGAGGACCACCGGAGAG+GGG - chr4_3:54692152-54692171 None:intergenic 65.0%
GTACGGAGGACCACCGGAGA+GGG - chr4_3:54692153-54692172 None:intergenic 65.0%
TGTACGGAGGACCACCGGAG+AGG - chr4_3:54692154-54692173 None:intergenic 65.0%
TGCGTGGGTGTGGCGGTGTA+CGG - chr4_3:54692170-54692189 None:intergenic 65.0%
GGTGAACTGCGTGGGTGTGG+CGG - chr4_3:54692177-54692196 None:intergenic 65.0%
CCCACGCAGTTCACCTGTCC+AGG + chr4_3:54692182-54692201 Msa0648240:five_prime_UTR 65.0%
GGCGGTGTACGGAGGACCAC+CGG - chr4_3:54692159-54692178 None:intergenic 70.0%
GTGGGTGTGGCGGTGTACGG+AGG - chr4_3:54692167-54692186 None:intergenic 70.0%
GGCGGTGTACGGAGGACCAC+CGG - chr4_3:54692159-54692178 None:intergenic 70.0%
GTGGGTGTGGCGGTGTACGG+AGG - chr4_3:54692167-54692186 None:intergenic 70.0%
AACCCGCCGCCACCCCTCTC+CGG + chr4_3:54692137-54692156 Msa0648240:five_prime_UTR 75.0%
GGACCACCGGAGAGGGGTGG+CGG - chr4_3:54692146-54692165 None:intergenic 75.0%
GGAGGACCACCGGAGAGGGG+TGG - chr4_3:54692149-54692168 None:intergenic 75.0%
AACCCGCCGCCACCCCTCTC+CGG + chr4_3:54692137-54692156 Msa0648240:five_prime_UTR 75.0%
GGACCACCGGAGAGGGGTGG+CGG - chr4_3:54692146-54692165 None:intergenic 75.0%
GGAGGACCACCGGAGAGGGG+TGG - chr4_3:54692149-54692168 None:intergenic 75.0%
!! CACCGGAGAGGGGTGGCGGC+GGG - chr4_3:54692142-54692161 None:intergenic 80.0%
!! CCACCGGAGAGGGGTGGCGG+CGG - chr4_3:54692143-54692162 None:intergenic 80.0%
!! CACCGGAGAGGGGTGGCGGC+GGG - chr4_3:54692142-54692161 None:intergenic 80.0%
!! CCACCGGAGAGGGGTGGCGG+CGG - chr4_3:54692143-54692162 None:intergenic 80.0%
! CCGCCGCCACCCCTCTCCGG+TGG + chr4_3:54692140-54692159 Msa0648240:five_prime_UTR 85.0%
! CCGCCGCCACCCCTCTCCGG+TGG + chr4_3:54692140-54692159 Msa0648240:five_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54691868 54693281 54691868 ID=Msa0648240;Name=Msa0648240
chr4_3 mRNA 54691868 54693281 54691868 ID=Msa0648240-mRNA-1;Parent=Msa0648240;Name=Msa0648240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=336|0|0.5|1|0|0.5|2|619|91
chr4_3 exon 54691868 54692203 54691868 ID=Msa0648240-mRNA-1:exon:13863;Parent=Msa0648240-mRNA-1
chr4_3 exon 54692387 54693281 54692387 ID=Msa0648240-mRNA-1:exon:13864;Parent=Msa0648240-mRNA-1
chr4_3 five_prime_UTR 54691868 54692203 54691868 ID=Msa0648240-mRNA-1:five_prime_utr;Parent=Msa0648240-mRNA-1
chr4_3 CDS 54692387 54692662 54692387 ID=Msa0648240-mRNA-1:cds;Parent=Msa0648240-mRNA-1
chr4_3 three_prime_UTR 54692663 54693281 54692663 ID=Msa0648240-mRNA-1:three_prime_utr;Parent=Msa0648240-mRNA-1
Gene Sequence

>Msa0648240

ATGGGAAAGGGTTTGATATGGGCGACGGCAGAGGATCTGCATAGGAATAGGAGTCGAGTTCTGTCGCTATATCGTCACATACTGCGAAGCTTGAATTCTCCTTCGTTGCCACTGACATTCGCTGCAAGACTGGCGAAGAAAGCTGAGGTACGTGCAATGTTTTGGGTGGGTTCTGATGAACGGTCTTTGCATAACATTGCTGACCTAATTGATACTGCTGAATACTCTCTATCTTTTCTCAAGAAAGGTCAATTTCCTCCTCGTCACATTACCTGA

Protein sequence

>Msa0648240

MGKGLIWATAEDLHRNRSRVLSLYRHILRSLNSPSLPLTFAARLAKKAEVRAMFWVGSDERSLHNIADLIDTAEYSLSFLKKGQFPPRHIT*