Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716420 | XP_003611972.1 | 91.379 | 522 | 10 | 1 | 1 | 522 | 1 | 487 | 0.0 | 900 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716420 | sp|O23215|PBRP1_ARATH | 78.763 | 372 | 37 | 4 | 1 | 369 | 1 | 333 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716420 | G7KC98 | 91.379 | 522 | 10 | 1 | 1 | 522 | 1 | 487 | 0.0 | 900 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0716420 | -0.811947 | 5.425581e-51 | -8.615850e-47 |
| Msa0112300 | Msa0716420 | 0.820729 | 5.881143e-53 | -8.615850e-47 |
| Msa0618200 | Msa0716420 | 0.817170 | 3.789466e-52 | -8.615850e-47 |
| Msa0643320 | Msa0716420 | -0.813151 | 2.959740e-51 | -8.615850e-47 |
| Msa0648240 | Msa0716420 | 0.827080 | 1.905621e-54 | -8.615850e-47 |
| Msa0669720 | Msa0716420 | -0.814955 | 1.183269e-51 | -8.615850e-47 |
| Msa0683140 | Msa0716420 | -0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0683600 | Msa0716420 | -0.817051 | 4.028911e-52 | -8.615850e-47 |
| Msa0716420 | Msa0758230 | -0.804980 | 1.664477e-49 | -8.615850e-47 |
| Msa0716420 | Msa0790170 | 0.808904 | 2.462740e-50 | -8.615850e-47 |
| Msa0716420 | Msa0790820 | 0.810982 | 8.791583e-51 | -8.615850e-47 |
| Msa0716420 | Msa0798810 | 0.835823 | 1.340366e-56 | -8.615850e-47 |
| Msa0716420 | Msa0799010 | 0.976971 | 7.405973e-143 | -8.615850e-47 |
| Msa0716420 | Msa0814630 | 0.830119 | 3.513082e-55 | -8.615850e-47 |
| Msa0716420 | Msa0833190 | 0.809461 | 1.871207e-50 | -8.615850e-47 |
| Msa0716420 | Msa0837420 | 0.891577 | 3.498225e-74 | -8.615850e-47 |
| Msa0716420 | Msa0855160 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0716420 | Msa0860900 | 0.813490 | 2.493657e-51 | -8.615850e-47 |
| Msa0716420 | Msa0879860 | -0.805251 | 1.460613e-49 | -8.615850e-47 |
| Msa0716420 | Msa0924150 | 0.806220 | 9.143891e-50 | -8.615850e-47 |
| Msa0716420 | Msa0943270 | -0.810598 | 1.064599e-50 | -8.615850e-47 |
| Msa0716420 | Msa0963090 | 0.800226 | 1.591647e-48 | -8.615850e-47 |
| Msa0716420 | Msa1000930 | -0.809824 | 1.562939e-50 | -8.615850e-47 |
| Msa0716420 | Msa1002600 | 0.964483 | 2.199616e-123 | -8.615850e-47 |
| Msa0716420 | Msa1029080 | 0.813478 | 2.508008e-51 | -8.615850e-47 |
| Msa0716420 | Msa1084500 | 0.819291 | 1.254799e-52 | -8.615850e-47 |
| Msa0716420 | Msa1088250 | 0.800644 | 1.308181e-48 | -8.615850e-47 |
| Msa0716420 | Msa1098720 | 0.805599 | 1.234991e-49 | -8.615850e-47 |
| Msa0716420 | Msa1125790 | 0.850563 | 1.566257e-60 | -8.615850e-47 |
| Msa0716420 | Msa1125960 | 0.800768 | 1.234486e-48 | -8.615850e-47 |
| Msa0716420 | Msa1126120 | 0.804832 | 1.787560e-49 | -8.615850e-47 |
| Msa0716420 | Msa1130670 | 0.807167 | 5.769124e-50 | -8.615850e-47 |
| Msa0716420 | Msa1135800 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0716420 | Msa1135810 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0716420 | Msa1156170 | 0.809869 | 1.529058e-50 | -8.615850e-47 |
| Msa0716420 | Msa1172130 | 0.834684 | 2.600047e-56 | -8.615850e-47 |
| Msa0716420 | Msa1173900 | -0.819615 | 1.058239e-52 | -8.615850e-47 |
| Msa0716420 | Msa1188600 | 0.830918 | 2.240388e-55 | -8.615850e-47 |
| Msa0716420 | Msa1204100 | 0.811891 | 5.579205e-51 | -8.615850e-47 |
| Msa0716420 | Msa1210660 | 0.800677 | 1.288216e-48 | -8.615850e-47 |
| Msa0716420 | Msa1211050 | 0.800074 | 1.709388e-48 | -8.615850e-47 |
| Msa0716420 | Msa1226610 | -0.809089 | 2.247555e-50 | -8.615850e-47 |
| Msa0716420 | Msa1242920 | 0.805309 | 1.420366e-49 | -8.615850e-47 |
| Msa0716420 | Msa1253810 | -0.817051 | 4.030525e-52 | -8.615850e-47 |
| Msa0716420 | Msa1256270 | 0.828160 | 1.049249e-54 | -8.615850e-47 |
| Msa0716420 | Msa1293480 | 0.816837 | 4.500519e-52 | -8.615850e-47 |
| Msa0716420 | Msa1296460 | 0.845354 | 4.280008e-59 | -8.615850e-47 |
| Msa0716420 | Msa1298550 | 0.807239 | 5.570619e-50 | -8.615850e-47 |
| Msa0716420 | Msa1329050 | 0.821706 | 3.500572e-53 | -8.615850e-47 |
| Msa0716420 | Msa1330890 | 0.813653 | 2.295191e-51 | -8.615850e-47 |
| Msa0716420 | Msa1359270 | -0.800570 | 1.354866e-48 | -8.615850e-47 |
| Msa0716420 | Msa1395600 | 0.804308 | 2.299073e-49 | -8.615850e-47 |
| Msa0716420 | Msa1417810 | 0.824273 | 8.825774e-54 | -8.615850e-47 |
| Msa0716420 | Msa1418960 | 0.806551 | 7.785789e-50 | -8.615850e-47 |
| Msa0716420 | Msa1445400 | 0.825532 | 4.452112e-54 | -8.615850e-47 |
| Msa0716420 | Msa1449350 | 0.822512 | 2.276492e-53 | -8.615850e-47 |
| Msa0716420 | Msa1454950 | -0.812167 | 4.858662e-51 | -8.615850e-47 |
| Msa0140510 | Msa0716420 | 0.827190 | 1.793947e-54 | -8.615850e-47 |
| Msa0140520 | Msa0716420 | 0.804054 | 2.597187e-49 | -8.615850e-47 |
| Msa0175290 | Msa0716420 | 0.823592 | 1.275098e-53 | -8.615850e-47 |
| Msa0212750 | Msa0716420 | 0.814196 | 1.742411e-51 | -8.615850e-47 |
| Msa0219250 | Msa0716420 | 0.822773 | 1.979801e-53 | -8.615850e-47 |
| Msa0233380 | Msa0716420 | -0.801895 | 7.256978e-49 | -8.615850e-47 |
| Msa0370160 | Msa0716420 | 0.809429 | 1.900553e-50 | -8.615850e-47 |
| Msa0436190 | Msa0716420 | -0.807585 | 4.703806e-50 | -8.615850e-47 |
| Msa0467260 | Msa0716420 | 0.807612 | 4.643379e-50 | -8.615850e-47 |
| Msa0258880 | Msa0716420 | 0.824972 | 6.040991e-54 | -8.615850e-47 |
| Msa0295000 | Msa0716420 | 0.828570 | 8.352576e-55 | -8.615850e-47 |
| Msa0296980 | Msa0716420 | 0.847965 | 8.282329e-60 | -8.615850e-47 |
| Msa0511770 | Msa0716420 | -0.807037 | 6.146435e-50 | -8.615850e-47 |
| Msa0524590 | Msa0716420 | -0.806086 | 9.755213e-50 | -8.615850e-47 |
| Msa0524600 | Msa0716420 | -0.803916 | 2.773595e-49 | -8.615850e-47 |
| Msa0554380 | Msa0716420 | 0.816821 | 4.538751e-52 | -8.615850e-47 |
| Msa0586520 | Msa0716420 | 0.806523 | 7.891307e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716420 | MtrunA17_Chr5g0403861 | 91.379 | 522 | 10 | 1 | 1 | 522 | 1 | 487 | 0.0 | 900 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716420 | AT4G36650.1 | 78.763 | 372 | 37 | 4 | 1 | 369 | 1 | 333 | 0.0 | 566 |
| Msa0716420 | AT4G36650.2 | 67.073 | 410 | 80 | 7 | 1 | 398 | 1 | 367 | 5.03e-176 | 500 |
Find 150 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATTCATTTCAGTATTC+TGG | 0.159062 | 5_1:-9872125 | None:intergenic |
| TGTCATTTGGCTTGTTTCTT+AGG | 0.206105 | 5_1:+9872224 | Msa0716420:three_prime_UTR |
| GATTGCAAGTGTCGAATATT+TGG | 0.233569 | 5_1:-9872080 | None:intergenic |
| CTCAGCTGCCGCCATATATT+TGG | 0.241130 | 5_1:+9871488 | Msa0716420:CDS |
| CCCACAACCTTAATTGCTTC+TGG | 0.251621 | 5_1:+9871672 | Msa0716420:CDS |
| ACCAGTTACTTTGCAAATTT+CGG | 0.256850 | 5_1:-9871544 | None:intergenic |
| AATATAACCTGAAGGGTTCT+AGG | 0.270602 | 5_1:-9869172 | None:intergenic |
| TATAGAGGTTACTTCTTCTT+TGG | 0.274158 | 5_1:+9871722 | Msa0716420:CDS |
| GATATAGAATTGCTGTTAAT+AGG | 0.275872 | 5_1:-9870920 | None:intergenic |
| GTCTTCTTCTTCGTTGGTTT+CGG | 0.282449 | 5_1:-9868807 | None:intergenic |
| TGCTACTGCTGCTCTTGTTC+AGG | 0.283370 | 5_1:+9869129 | Msa0716420:CDS |
| CCTTGCGCCGCTGAACAGTA+TGG | 0.285793 | 5_1:-9868611 | None:intergenic |
| GTAATTCTTTATACACTTTA+CGG | 0.287548 | 5_1:-9871584 | None:intergenic |
| GTGTTGTTGTTGATAATCTT+AGG | 0.297419 | 5_1:+9868978 | Msa0716420:CDS |
| AGAACGTCCAGAAGCAATTA+AGG | 0.300940 | 5_1:-9871679 | None:intergenic |
| CGGGAAATACATCAAGATAC+TGG | 0.318001 | 5_1:+9870874 | Msa0716420:CDS |
| GCGGCAGCTGAGATGCTAAT+TGG | 0.320894 | 5_1:-9871477 | None:intergenic |
| CTGCTACTTGTTTGAGAAAT+CGG | 0.322311 | 5_1:+9869092 | Msa0716420:CDS |
| CTCTGTTATGAGGTCGCTTT+CGG | 0.324574 | 5_1:+9872037 | Msa0716420:CDS |
| ATAAAGAATTACTGGAGAAT+TGG | 0.329959 | 5_1:+9871595 | Msa0716420:CDS |
| GTGACCTCTACCATGGGTTC+AGG | 0.330609 | 5_1:-9871945 | None:intergenic |
| GTAAAGCGGGCTGGGCTCTA+AGG | 0.334203 | 5_1:-9868873 | None:intergenic |
| TTCTCTGTACTTGTGTTCAA+TGG | 0.341981 | 5_1:-9868565 | None:intergenic |
| TAAAGTGTATAAAGAATTAC+TGG | 0.348175 | 5_1:+9871587 | Msa0716420:CDS |
| TGAAATCAGTAGGTTTCTTA+AGG | 0.353249 | 5_1:+9872176 | Msa0716420:three_prime_UTR |
| GGTTTGTTTGGTTTAAATTC+CGG | 0.356896 | 5_1:-9871759 | None:intergenic |
| CTATTCAGCAGTCAACGTTT+TGG | 0.357039 | 5_1:+9871829 | Msa0716420:CDS |
| TTGGTTTGGTTGAGAGTGGG+GGG | 0.359289 | 5_1:-9868782 | None:intergenic |
| CTACCATGGGTTCAGGTTGT+TGG | 0.366695 | 5_1:-9871938 | None:intergenic |
| TTCTTCGTTGGTTTCGGTGT+TGG | 0.368521 | 5_1:-9868801 | None:intergenic |
| GCCCGCTCCGGAGGAACAGC+TGG | 0.371273 | 5_1:-9871645 | None:intergenic |
| TAAAGAATTACTGGAGAATT+GGG | 0.376158 | 5_1:+9871596 | Msa0716420:CDS |
| TCGGCCTCATTAGGTTTGTT+TGG | 0.386243 | 5_1:-9871771 | None:intergenic |
| TCCATTGAATCTAAAACATT+CGG | 0.388238 | 5_1:-9871891 | None:intergenic |
| TTTGGATTCAGAAAATTTGC+CGG | 0.392454 | 5_1:+9871740 | Msa0716420:CDS |
| TATATATGTATTGTGTCATT+TGG | 0.397456 | 5_1:+9872211 | Msa0716420:three_prime_UTR |
| CGTTGGTTTCGGTGTTGGTT+TGG | 0.400396 | 5_1:-9868796 | None:intergenic |
| GTGTTGGTTTGGTTGAGAGT+GGG | 0.400909 | 5_1:-9868785 | None:intergenic |
| GCCGAAATTTGCAAAGTAAC+TGG | 0.401723 | 5_1:+9871543 | Msa0716420:CDS |
| TTTGGGTCGCACTGGGAAGT+TGG | 0.408622 | 5_1:-9871857 | None:intergenic |
| TCAAGAACCTAGAACCCTTC+AGG | 0.414329 | 5_1:+9869165 | Msa0716420:CDS |
| AATGTGGCACAAAAGGAAAT+CGG | 0.414393 | 5_1:+9870854 | Msa0716420:CDS |
| ACAGATGTTTCGTCGATACT+TGG | 0.414888 | 5_1:+9869016 | Msa0716420:CDS |
| TGCCGCCAATGTGGCACAAA+AGG | 0.415436 | 5_1:+9870847 | Msa0716420:CDS |
| TTGGGTCGCACTGGGAAGTT+GGG | 0.415514 | 5_1:-9871856 | None:intergenic |
| TTAGATTCAATGGATATTGA+TGG | 0.416703 | 5_1:+9871900 | Msa0716420:CDS |
| GAATGGGTCTTCTTCTTCGT+TGG | 0.417262 | 5_1:-9868813 | None:intergenic |
| AACAGCTGGGGTGTAATTAG+AGG | 0.420498 | 5_1:-9871631 | None:intergenic |
| ATGAAGCCCGTGGGCTCGAA+TGG | 0.428456 | 5_1:-9868830 | None:intergenic |
| TACTTTGCAAATTTCGGCCT+GGG | 0.429283 | 5_1:-9871538 | None:intergenic |
| TGGACGTTCTTCAACAACTA+AGG | 0.433325 | 5_1:+9871692 | Msa0716420:CDS |
| TGAAGAAGGGTGCAAAATCT+TGG | 0.434378 | 5_1:-9870953 | None:intergenic |
| TGTTGTTGTTGATAATCTTA+GGG | 0.437061 | 5_1:+9868979 | Msa0716420:CDS |
| TCAACCAAAGGGTTGTGTAA+TGG | 0.437946 | 5_1:+9871229 | Msa0716420:CDS |
| CAGATTTATTGAGCTGAAGA+AGG | 0.440283 | 5_1:-9870967 | None:intergenic |
| ATCAGTTAGACCTGGCTGGC+TGG | 0.441531 | 5_1:+9871255 | Msa0716420:CDS |
| TAGTTGGCAAGCCAAATATA+TGG | 0.445296 | 5_1:-9871499 | None:intergenic |
| GGTGTTGGTTTGGTTGAGAG+TGG | 0.447403 | 5_1:-9868786 | None:intergenic |
| ACTGCTGAATAGCCGATGAT+TGG | 0.448535 | 5_1:-9871818 | None:intergenic |
| CGAGACATAGGGGATTATCT+TGG | 0.451200 | 5_1:-9868742 | None:intergenic |
| TGTTGGTTTGGTTGAGAGTG+GGG | 0.456506 | 5_1:-9868784 | None:intergenic |
| TGTTTCGTCGATACTTGGAT+TGG | 0.463509 | 5_1:+9869021 | Msa0716420:CDS |
| CCCAGCTGTTCCTCCGGAGC+GGG | 0.465744 | 5_1:+9871644 | Msa0716420:CDS |
| GTTGGTTTGGTTGAGAGTGG+GGG | 0.466278 | 5_1:-9868783 | None:intergenic |
| CACTACCACAAAGTGATCAT+TGG | 0.466967 | 5_1:-9871282 | None:intergenic |
| AGATTGAAGGTAAAGCGGGC+TGG | 0.467976 | 5_1:-9868882 | None:intergenic |
| TCCAGAAGCAATTAAGGTTG+TGG | 0.468811 | 5_1:-9871673 | None:intergenic |
| TAACTTGTTTCATATTGCAT+TGG | 0.471151 | 5_1:+9872285 | Msa0716420:three_prime_UTR |
| GATTGAAGGTAAAGCGGGCT+GGG | 0.472239 | 5_1:-9868881 | None:intergenic |
| CCAGAAGCAATTAAGGTTGT+GGG | 0.478234 | 5_1:-9871672 | None:intergenic |
| CGGTGGTTGTTGTTGTGCAA+CGG | 0.480438 | 5_1:-9868634 | None:intergenic |
| TTGTCCATTACACAACCCTT+TGG | 0.482073 | 5_1:-9871233 | None:intergenic |
| GAGACATAGGGGATTATCTT+GGG | 0.484053 | 5_1:-9868741 | None:intergenic |
| CATTGGACATCCAGCCAGCC+AGG | 0.484576 | 5_1:-9871265 | None:intergenic |
| TTACTTTGCAAATTTCGGCC+TGG | 0.486938 | 5_1:-9871539 | None:intergenic |
| AAGCAGGAGGACTGTAAAGT+TGG | 0.489113 | 5_1:-9872004 | None:intergenic |
| AACTAAGGTTGATGCTATAG+AGG | 0.490167 | 5_1:+9871707 | Msa0716420:CDS |
| CCATGGGTTCAGGTTGTTGG+TGG | 0.491351 | 5_1:-9871935 | None:intergenic |
| TAGATTCAATGGATATTGAT+GGG | 0.494603 | 5_1:+9871901 | Msa0716420:CDS |
| TTACACCCCAGCTGTTCCTC+CGG | 0.495785 | 5_1:+9871638 | Msa0716420:CDS |
| CAATCGTCTAAGACAATGCC+TGG | 0.497496 | 5_1:+9872098 | Msa0716420:CDS |
| GTCACAAATGGTGCTGGTAT+CGG | 0.500308 | 5_1:+9871963 | Msa0716420:CDS |
| ATGTGGCACAAAAGGAAATC+GGG | 0.502560 | 5_1:+9870855 | Msa0716420:CDS |
| CTTGCGCCGCTGAACAGTAT+GGG | 0.505019 | 5_1:-9868610 | None:intergenic |
| TGAAGCCCGTGGGCTCGAAT+GGG | 0.505489 | 5_1:-9868829 | None:intergenic |
| TTCCGCAAGGTATCCCGAAA+AGG | 0.505591 | 5_1:-9868912 | None:intergenic |
| CAAGTTCAAGCTCTGTTATG+AGG | 0.516513 | 5_1:+9872027 | Msa0716420:CDS |
| TCAGCTCAATAAATCTGCTC+AGG | 0.517419 | 5_1:+9870973 | Msa0716420:CDS |
| GATTATCTTGGGCGCGCAGG+TGG | 0.519878 | 5_1:-9868730 | None:intergenic |
| GGTGGAAGATGTGGTGAGGA+TGG | 0.522042 | 5_1:-9868712 | None:intergenic |
| GGGGATTATCTTGGGCGCGC+AGG | 0.527359 | 5_1:-9868733 | None:intergenic |
| GATCTGGTGTGACGAGACAT+AGG | 0.527875 | 5_1:-9868754 | None:intergenic |
| GTGGAAGATGTGGTGAGGAT+GGG | 0.528792 | 5_1:-9868711 | None:intergenic |
| CCCGCTCCGGAGGAACAGCT+GGG | 0.534028 | 5_1:-9871644 | None:intergenic |
| AAAAGGAGAGGGAAGATTGA+AGG | 0.535379 | 5_1:-9868895 | None:intergenic |
| TCATAACCGCTTTCTCAACA+TGG | 0.537661 | 5_1:+9868849 | Msa0716420:CDS |
| ACAAATGCTTCTGCACTCGC+AGG | 0.542085 | 5_1:+9871451 | Msa0716420:CDS |
| TAAACCAAACAAACCTAATG+AGG | 0.542847 | 5_1:+9871767 | Msa0716420:CDS |
| CCATACTGTTCAGCGGCGCA+AGG | 0.542989 | 5_1:+9868611 | Msa0716420:CDS |
| GACAATCAGTTAGACCTGGC+TGG | 0.544709 | 5_1:+9871251 | Msa0716420:CDS |
| GTGGGAAATGCCCGCTCCGG+AGG | 0.547290 | 5_1:-9871654 | None:intergenic |
| TTTCAGTATTCTGGAAAACC+AGG | 0.547759 | 5_1:-9872116 | None:intergenic |
| GTTGTGGGAAATGCCCGCTC+CGG | 0.551336 | 5_1:-9871657 | None:intergenic |
| TGCTCGTGCAAGCCAATCAT+CGG | 0.551744 | 5_1:+9871806 | Msa0716420:CDS |
| GGATTTCATTATTCAACTCA+AGG | 0.554136 | 5_1:+9872306 | Msa0716420:three_prime_UTR |
| CCCATGGTAGAGGTCACAAA+TGG | 0.556010 | 5_1:+9871951 | Msa0716420:CDS |
| ATCTGGTGTGACGAGACATA+GGG | 0.559207 | 5_1:-9868753 | None:intergenic |
| AGAAGACCCATTCGAGCCCA+CGG | 0.559374 | 5_1:+9868823 | Msa0716420:CDS |
| TGCAAGTGTCGAATATTTGG+AGG | 0.560033 | 5_1:-9872077 | None:intergenic |
| ACCATTTGTGACCTCTACCA+TGG | 0.561783 | 5_1:-9871952 | None:intergenic |
| GTAGAGGTCACAAATGGTGC+TGG | 0.562911 | 5_1:+9871957 | Msa0716420:CDS |
| ACAGAGCTTGAACTTGAAGC+AGG | 0.565561 | 5_1:-9872020 | None:intergenic |
| GGGAAGATTGAAGGTAAAGC+GGG | 0.566199 | 5_1:-9868886 | None:intergenic |
| CCCCAGCTGTTCCTCCGGAG+CGG | 0.571837 | 5_1:+9871643 | Msa0716420:CDS |
| ATATTTGGAGGAGCAGATGA+AGG | 0.572074 | 5_1:-9872065 | None:intergenic |
| AGATTTATTGAGCTGAAGAA+GGG | 0.572226 | 5_1:-9870966 | None:intergenic |
| CAGGAACTGGCTACTCACAT+AGG | 0.573292 | 5_1:+9871414 | Msa0716420:intron |
| AGGAGGACTGTAAAGTTGGT+TGG | 0.579622 | 5_1:-9872000 | None:intergenic |
| ACAACCTGAACCCATGGTAG+AGG | 0.579624 | 5_1:+9871941 | Msa0716420:CDS |
| GGGAAATACATCAAGATACT+GGG | 0.584566 | 5_1:+9870875 | Msa0716420:CDS |
| CGTTGCACAACAACAACCAC+CGG | 0.589945 | 5_1:+9868635 | Msa0716420:CDS |
| CCACCAACAACCTGAACCCA+TGG | 0.593498 | 5_1:+9871935 | Msa0716420:CDS |
| GATGTCCAATGATCACTTTG+TGG | 0.593682 | 5_1:+9871277 | Msa0716420:CDS |
| CCATTTGTGACCTCTACCAT+GGG | 0.594086 | 5_1:-9871951 | None:intergenic |
| GGGCGCGCAGGTGGAAGATG+TGG | 0.601302 | 5_1:-9868721 | None:intergenic |
| GAAGACCCATTCGAGCCCAC+GGG | 0.610171 | 5_1:+9868824 | Msa0716420:CDS |
| ACAGCTGGGGTGTAATTAGA+GGG | 0.610212 | 5_1:-9871630 | None:intergenic |
| CAAGGTATCCCGAAAAGGAG+AGG | 0.615007 | 5_1:-9868907 | None:intergenic |
| CTCAGATAAATGAAATCAGT+AGG | 0.617919 | 5_1:+9872166 | Msa0716420:three_prime_UTR |
| AAGGTATCCCGAAAAGGAGA+GGG | 0.619065 | 5_1:-9868906 | None:intergenic |
| ATCACAGAATGCACATCATG+CGG | 0.620104 | 5_1:+9868665 | Msa0716420:CDS |
| AGGTTAGAATATAACCTGAA+GGG | 0.624033 | 5_1:-9869179 | None:intergenic |
| AGAAGACAAACGCAAAACCC+AGG | 0.626006 | 5_1:+9871521 | Msa0716420:CDS |
| TAAGGACCATGTTGAGAAAG+CGG | 0.635021 | 5_1:-9868855 | None:intergenic |
| AGGGAAGATTGAAGGTAAAG+CGG | 0.636882 | 5_1:-9868887 | None:intergenic |
| GAGCTTGAACTTGAAGCAGG+AGG | 0.641001 | 5_1:-9872017 | None:intergenic |
| CGCAGGTGGAAGATGTGGTG+AGG | 0.641116 | 5_1:-9868716 | None:intergenic |
| AATTTCAATTGCCGCCAATG+TGG | 0.648364 | 5_1:+9870838 | Msa0716420:CDS |
| AGTGATGTTAGTAACATACA+AGG | 0.652580 | 5_1:-9872145 | None:intergenic |
| TTTGGAGGAGCAGATGAAGG+AGG | 0.658376 | 5_1:-9872062 | None:intergenic |
| CCGCTCCGGAGGAACAGCTG+GGG | 0.661546 | 5_1:-9871643 | None:intergenic |
| AAAGCGGTTATGAAGCCCGT+GGG | 0.662090 | 5_1:-9868839 | None:intergenic |
| AACAAACCTAATGAGGCCGA+AGG | 0.665876 | 5_1:+9871774 | Msa0716420:CDS |
| GAGTACGTTCAAGTTCCGCA+AGG | 0.674170 | 5_1:-9868925 | None:intergenic |
| TCTGGTGTGACGAGACATAG+GGG | 0.679597 | 5_1:-9868752 | None:intergenic |
| GAAAGCGGTTATGAAGCCCG+TGG | 0.684756 | 5_1:-9868840 | None:intergenic |
| AATGGACAATCAGTTAGACC+TGG | 0.692074 | 5_1:+9871247 | Msa0716420:CDS |
| GAAGTGCCCATACTGTTCAG+CGG | 0.702862 | 5_1:+9868604 | Msa0716420:CDS |
| TTGGCAAGCCAAATATATGG+CGG | 0.712362 | 5_1:-9871496 | None:intergenic |
| ATTGTCTTTCTTCTACGACG+CGG | 0.797371 | 5_1:-9868688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTGACAAAG+AGG | + | chr5_1:9869677-9869696 | Msa0716420:intron | 15.0% |
| !!! | CTTTTGTATTTGTAATATAA+AGG | - | chr5_1:9871367-9871386 | None:intergenic | 15.0% |
| !!! | GAATGTACTTTTTTTTTTTA+AGG | + | chr5_1:9872345-9872364 | Msa0716420:three_prime_UTR | 15.0% |
| !!! | TTTTTTGTTAAAAGCTGAAT+TGG | + | chr5_1:9869593-9869612 | Msa0716420:intron | 20.0% |
| !! | TAATAGTCTAATATTGCAAA+TGG | + | chr5_1:9869889-9869908 | Msa0716420:intron | 20.0% |
| !!! | GTTAATATTGGACAATTTTT+CGG | + | chr5_1:9870037-9870056 | Msa0716420:intron | 20.0% |
| !!! | AAATAAGCTTTTTAGTAACT+GGG | - | chr5_1:9870112-9870131 | None:intergenic | 20.0% |
| !!! | AAAATAAGCTTTTTAGTAAC+TGG | - | chr5_1:9870113-9870132 | None:intergenic | 20.0% |
| !!! | CTTATTTTTGTCTATGAAAA+TGG | + | chr5_1:9870125-9870144 | Msa0716420:intron | 20.0% |
| !! | ATAAATAATAGAGGAAATGA+AGG | - | chr5_1:9870557-9870576 | None:intergenic | 20.0% |
| !! | ATGCTGAATATAAATAATAG+AGG | - | chr5_1:9870566-9870585 | None:intergenic | 20.0% |
| !!! | TATTTCATATAGCAGATTTT+TGG | + | chr5_1:9870660-9870679 | Msa0716420:intron | 20.0% |
| !!! | ATTTGCTATTGATAATACTT+TGG | + | chr5_1:9870702-9870721 | Msa0716420:intron | 20.0% |
| !!! | CAAGATTTTCAAACAAAATA+AGG | - | chr5_1:9871037-9871056 | None:intergenic | 20.0% |
| !! | TTTGTTTGAAAATCTTGAAA+CGG | + | chr5_1:9871040-9871059 | Msa0716420:intron | 20.0% |
| !! | ATCTATTACTAATTGTATCA+TGG | - | chr5_1:9871109-9871128 | None:intergenic | 20.0% |
| !!! | TTCTCTATGATTTTTCTATT+GGG | + | chr5_1:9871142-9871161 | Msa0716420:intron | 20.0% |
| !! | GTAATTCTTTATACACTTTA+CGG | - | chr5_1:9871587-9871606 | None:intergenic | 20.0% |
| !! | TAAAGTGTATAAAGAATTAC+TGG | + | chr5_1:9871587-9871606 | Msa0716420:CDS | 20.0% |
| !!! | TATATATGTATTGTGTCATT+TGG | + | chr5_1:9872211-9872230 | Msa0716420:three_prime_UTR | 20.0% |
| !!! | TGTTGTTGTTGATAATCTTA+GGG | + | chr5_1:9868979-9868998 | Msa0716420:CDS | 25.0% |
| ! | AATTGAAAGGAGGAAAAAAA+AGG | - | chr5_1:9869202-9869221 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCTCCTTTCAAT+TGG | + | chr5_1:9869201-9869220 | Msa0716420:intron | 25.0% |
| ! | CAATCACATTTATCATCTTT+AGG | - | chr5_1:9869406-9869425 | None:intergenic | 25.0% |
| ! | GTTTAAAGATAAGTTCAATG+TGG | - | chr5_1:9869556-9869575 | None:intergenic | 25.0% |
| ! | TGAACTTATCTTTAAACATC+AGG | + | chr5_1:9869559-9869578 | Msa0716420:intron | 25.0% |
| ! | GATACCTATAATAAGTATCA+GGG | + | chr5_1:9869615-9869634 | Msa0716420:intron | 25.0% |
| ! | ATTTGATATGATGTAAGCAT+TGG | + | chr5_1:9869705-9869724 | Msa0716420:intron | 25.0% |
| ! | AAAATACCATTACCATATCA+TGG | + | chr5_1:9869858-9869877 | Msa0716420:intron | 25.0% |
| ! | TTGAATGAATGCTCATAATT+CGG | - | chr5_1:9870160-9870179 | None:intergenic | 25.0% |
| ! | CGATAAATAGGTAAATAGAA+AGG | - | chr5_1:9870327-9870346 | None:intergenic | 25.0% |
| ! | ACTGAAATTCAAAATCCTTA+AGG | - | chr5_1:9870424-9870443 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTATGCACATGTA+TGG | + | chr5_1:9870480-9870499 | Msa0716420:intron | 25.0% |
| ! | GCATAGGTTATATAAATCAT+TGG | - | chr5_1:9870530-9870549 | None:intergenic | 25.0% |
| ! | GTATTATCAATAGCAAATTG+TGG | - | chr5_1:9870700-9870719 | None:intergenic | 25.0% |
| !! | TCAATATCGAGATTTTACTT+GGG | - | chr5_1:9870784-9870803 | None:intergenic | 25.0% |
| ! | TTTCACAAGAGTTACAAATA+CGG | - | chr5_1:9870810-9870829 | None:intergenic | 25.0% |
| !! | GATATAGAATTGCTGTTAAT+AGG | - | chr5_1:9870923-9870942 | None:intergenic | 25.0% |
| !!! | CAGATTCTGTTTTTACTTTA+TGG | - | chr5_1:9871077-9871096 | None:intergenic | 25.0% |
| !! | CTTCTCTATGATTTTTCTAT+TGG | + | chr5_1:9871141-9871160 | Msa0716420:intron | 25.0% |
| !! | TCTCTATGATTTTTCTATTG+GGG | + | chr5_1:9871143-9871162 | Msa0716420:intron | 25.0% |
| !! | TCCCTAAAATAACTTTTCTT+AGG | + | chr5_1:9871321-9871340 | Msa0716420:intron | 25.0% |
| !!! | CCCTAAGAAAAGTTATTTTA+GGG | - | chr5_1:9871325-9871344 | None:intergenic | 25.0% |
| !! | CCCTAAAATAACTTTTCTTA+GGG | + | chr5_1:9871322-9871341 | Msa0716420:intron | 25.0% |
| !!! | ACCCTAAGAAAAGTTATTTT+AGG | - | chr5_1:9871326-9871345 | None:intergenic | 25.0% |
| ! | ATAAAGAATTACTGGAGAAT+TGG | + | chr5_1:9871595-9871614 | Msa0716420:CDS | 25.0% |
| ! | TAAAGAATTACTGGAGAATT+GGG | + | chr5_1:9871596-9871615 | Msa0716420:CDS | 25.0% |
| !!! | ATTCGGATTTTGATGATTTT+GGG | - | chr5_1:9871877-9871896 | None:intergenic | 25.0% |
| !! | TCCATTGAATCTAAAACATT+CGG | - | chr5_1:9871894-9871913 | None:intergenic | 25.0% |
| ! | TTAGATTCAATGGATATTGA+TGG | + | chr5_1:9871900-9871919 | Msa0716420:CDS | 25.0% |
| ! | TAGATTCAATGGATATTGAT+GGG | + | chr5_1:9871901-9871920 | Msa0716420:CDS | 25.0% |
| !!! | TAACTTGTTTCATATTGCAT+TGG | + | chr5_1:9872285-9872304 | Msa0716420:three_prime_UTR | 25.0% |
| !! | GTGTTGTTGTTGATAATCTT+AGG | + | chr5_1:9868978-9868997 | Msa0716420:CDS | 30.0% |
| ! | ATCATGCTTTTCAGTTGTTT+AGG | + | chr5_1:9869059-9869078 | Msa0716420:CDS | 30.0% |
| ! | TCATGCTTTTCAGTTGTTTA+GGG | + | chr5_1:9869060-9869079 | Msa0716420:CDS | 30.0% |
| AGGTTAGAATATAACCTGAA+GGG | - | chr5_1:9869182-9869201 | None:intergenic | 30.0% | |
| AAGGTTAGAATATAACCTGA+AGG | - | chr5_1:9869183-9869202 | None:intergenic | 30.0% | |
| AAGTTTAACCAATTGAAAGG+AGG | - | chr5_1:9869212-9869231 | None:intergenic | 30.0% | |
| CCTAAGTTTAACCAATTGAA+AGG | - | chr5_1:9869215-9869234 | None:intergenic | 30.0% | |
| CCTTTCAATTGGTTAAACTT+AGG | + | chr5_1:9869212-9869231 | Msa0716420:intron | 30.0% | |
| ! | CTTAATTTTACAAGCTAGAC+AGG | - | chr5_1:9869307-9869326 | None:intergenic | 30.0% |
| CACATACTAGCTAATATGTT+CGG | - | chr5_1:9869330-9869349 | None:intergenic | 30.0% | |
| ! | TTAGGTTGTTTACATATTCG+TGG | - | chr5_1:9869388-9869407 | None:intergenic | 30.0% |
| TTATCTTTAAACATCAGGAC+TGG | + | chr5_1:9869564-9869583 | Msa0716420:intron | 30.0% | |
| TATCTTTAAACATCAGGACT+GGG | + | chr5_1:9869565-9869584 | Msa0716420:intron | 30.0% | |
| GGATACCTATAATAAGTATC+AGG | + | chr5_1:9869614-9869633 | Msa0716420:intron | 30.0% | |
| ATTAGAAACGATCCATGATA+TGG | - | chr5_1:9869873-9869892 | None:intergenic | 30.0% | |
| ! | AGTCTTGTAAGTGATTTAGT+TGG | + | chr5_1:9869990-9870009 | Msa0716420:intron | 30.0% |
| AAAACTAAGCAGCGATAAAT+AGG | - | chr5_1:9870339-9870358 | None:intergenic | 30.0% | |
| !! | GTCTTATTTCAATTGCTATG+CGG | + | chr5_1:9870607-9870626 | Msa0716420:intron | 30.0% |
| CTATATGAAATAGCAGATAG+TGG | - | chr5_1:9870652-9870671 | None:intergenic | 30.0% | |
| TGGATCTTACAATTCATGTT+AGG | + | chr5_1:9870722-9870741 | Msa0716420:intron | 30.0% | |
| ! | GAGAAAAGCCTGTAAATTTT+GGG | - | chr5_1:9870750-9870769 | None:intergenic | 30.0% |
| ! | ATTTTACTTGGGATCACAAA+GGG | - | chr5_1:9870773-9870792 | None:intergenic | 30.0% |
| ! | GTCAATATCGAGATTTTACT+TGG | - | chr5_1:9870785-9870804 | None:intergenic | 30.0% |
| AGATTTATTGAGCTGAAGAA+GGG | - | chr5_1:9870969-9870988 | None:intergenic | 30.0% | |
| !! | TAACTCTAGAAGTCACATTT+TGG | - | chr5_1:9871013-9871032 | None:intergenic | 30.0% |
| ! | TTTGTTCTTTTCTCAACCAA+AGG | + | chr5_1:9871217-9871236 | Msa0716420:CDS | 30.0% |
| ! | TTGTTCTTTTCTCAACCAAA+GGG | + | chr5_1:9871218-9871237 | Msa0716420:CDS | 30.0% |
| CAAATACAAAAGTCTGAGAA+TGG | + | chr5_1:9871375-9871394 | Msa0716420:intron | 30.0% | |
| ! | ACCAGTTACTTTGCAAATTT+CGG | - | chr5_1:9871547-9871566 | None:intergenic | 30.0% |
| TATAGAGGTTACTTCTTCTT+TGG | + | chr5_1:9871722-9871741 | Msa0716420:CDS | 30.0% | |
| TTTGGATTCAGAAAATTTGC+CGG | + | chr5_1:9871740-9871759 | Msa0716420:CDS | 30.0% | |
| ! | GGTTTGTTTGGTTTAAATTC+CGG | - | chr5_1:9871762-9871781 | None:intergenic | 30.0% |
| TAAACCAAACAAACCTAATG+AGG | + | chr5_1:9871767-9871786 | Msa0716420:CDS | 30.0% | |
| !! | CATTCGGATTTTGATGATTT+TGG | - | chr5_1:9871878-9871897 | None:intergenic | 30.0% |
| !! | TCCGAATGTTTTAGATTCAA+TGG | + | chr5_1:9871890-9871909 | Msa0716420:CDS | 30.0% |
| AGGAATTCATTTCAGTATTC+TGG | - | chr5_1:9872128-9872147 | None:intergenic | 30.0% | |
| AGTGATGTTAGTAACATACA+AGG | - | chr5_1:9872148-9872167 | None:intergenic | 30.0% | |
| CTCAGATAAATGAAATCAGT+AGG | + | chr5_1:9872166-9872185 | Msa0716420:three_prime_UTR | 30.0% | |
| TGAAATCAGTAGGTTTCTTA+AGG | + | chr5_1:9872176-9872195 | Msa0716420:three_prime_UTR | 30.0% | |
| GGATTTCATTATTCAACTCA+AGG | + | chr5_1:9872306-9872325 | Msa0716420:three_prime_UTR | 30.0% | |
| TTCTCTGTACTTGTGTTCAA+TGG | - | chr5_1:9868568-9868587 | None:intergenic | 35.0% | |
| !! | GCATTCTGTGATTGATTTTC+CGG | - | chr5_1:9868657-9868676 | None:intergenic | 35.0% |
| ! | CTGCTACTTGTTTGAGAAAT+CGG | + | chr5_1:9869092-9869111 | Msa0716420:CDS | 35.0% |
| AATATAACCTGAAGGGTTCT+AGG | - | chr5_1:9869175-9869194 | None:intergenic | 35.0% | |
| ! | GCTAGTATGTGATTTTCGTT+AGG | + | chr5_1:9869339-9869358 | Msa0716420:intron | 35.0% |
| ACACTACTCTTTGAATCCTT+TGG | - | chr5_1:9869515-9869534 | None:intergenic | 35.0% | |
| GAGTAGTGTGTTTAGATCTT+AGG | + | chr5_1:9869526-9869545 | Msa0716420:intron | 35.0% | |
| GCTTCCCTGATACTTATTAT+AGG | - | chr5_1:9869622-9869641 | None:intergenic | 35.0% | |
| AATGTGAACTCATTCTTCTG+TGG | + | chr5_1:9869742-9869761 | Msa0716420:intron | 35.0% | |
| ACTTCATAAATCCCTAGAAG+TGG | - | chr5_1:9869769-9869788 | None:intergenic | 35.0% | |
| AACGATCCATGATATGGTAA+TGG | - | chr5_1:9869867-9869886 | None:intergenic | 35.0% | |
| TCACTTACAAGACTGAGATA+TGG | - | chr5_1:9869984-9870003 | None:intergenic | 35.0% | |
| GCACGTAGAATCGTTAATAT+TGG | + | chr5_1:9870025-9870044 | Msa0716420:intron | 35.0% | |
| !! | ACAATTTTTCGGCAATCCTA+GGG | + | chr5_1:9870048-9870067 | Msa0716420:intron | 35.0% |
| ACAGCAAGGAGAAATATGTT+TGG | - | chr5_1:9870183-9870202 | None:intergenic | 35.0% | |
| ATGAGTTGTGTATGACCTTA+AGG | + | chr5_1:9870406-9870425 | Msa0716420:intron | 35.0% | |
| !!! | TGCTGAAGTGTTTTTTGTGA+TGG | + | chr5_1:9870445-9870464 | Msa0716420:intron | 35.0% |
| GTTAGGATCCCAAAATTTAC+AGG | + | chr5_1:9870739-9870758 | Msa0716420:intron | 35.0% | |
| ! | GGAGAAAAGCCTGTAAATTT+TGG | - | chr5_1:9870751-9870770 | None:intergenic | 35.0% |
| ! | TTTTACTTGGGATCACAAAG+GGG | - | chr5_1:9870772-9870791 | None:intergenic | 35.0% |
| ! | GATTTTACTTGGGATCACAA+AGG | - | chr5_1:9870774-9870793 | None:intergenic | 35.0% |
| TGTAACTCTTGTGAAATGAC+AGG | + | chr5_1:9870814-9870833 | Msa0716420:intron | 35.0% | |
| AATGTGGCACAAAAGGAAAT+CGG | + | chr5_1:9870854-9870873 | Msa0716420:CDS | 35.0% | |
| GGGAAATACATCAAGATACT+GGG | + | chr5_1:9870875-9870894 | Msa0716420:CDS | 35.0% | |
| CAGATTTATTGAGCTGAAGA+AGG | - | chr5_1:9870970-9870989 | None:intergenic | 35.0% | |
| !! | ATATCTGCTCTGCTTTTACA+AGG | + | chr5_1:9871172-9871191 | Msa0716420:intron | 35.0% |
| TAGTTGGCAAGCCAAATATA+TGG | - | chr5_1:9871502-9871521 | None:intergenic | 35.0% | |
| ! | TTTTGCGTTTGTCTTCTAGT+TGG | - | chr5_1:9871518-9871537 | None:intergenic | 35.0% |
| !! | AACTAAGGTTGATGCTATAG+AGG | + | chr5_1:9871707-9871726 | Msa0716420:CDS | 35.0% |
| !! | ACGAGCATTACTTTTACCTT+CGG | - | chr5_1:9871793-9871812 | None:intergenic | 35.0% |
| !! | GATTGCAAGTGTCGAATATT+TGG | - | chr5_1:9872083-9872102 | None:intergenic | 35.0% |
| ! | TTTCAGTATTCTGGAAAACC+AGG | - | chr5_1:9872119-9872138 | None:intergenic | 35.0% |
| !! | TGTCATTTGGCTTGTTTCTT+AGG | + | chr5_1:9872224-9872243 | Msa0716420:three_prime_UTR | 35.0% |
| !! | TTCTGTGATTGATTTTCCGG+TGG | - | chr5_1:9868654-9868673 | None:intergenic | 40.0% |
| ATCACAGAATGCACATCATG+CGG | + | chr5_1:9868665-9868684 | Msa0716420:CDS | 40.0% | |
| ATTGTCTTTCTTCTACGACG+CGG | - | chr5_1:9868691-9868710 | None:intergenic | 40.0% | |
| GAGACATAGGGGATTATCTT+GGG | - | chr5_1:9868744-9868763 | None:intergenic | 40.0% | |
| !! | GTCTTCTTCTTCGTTGGTTT+CGG | - | chr5_1:9868810-9868829 | None:intergenic | 40.0% |
| TCATAACCGCTTTCTCAACA+TGG | + | chr5_1:9868849-9868868 | Msa0716420:CDS | 40.0% | |
| TAAGGACCATGTTGAGAAAG+CGG | - | chr5_1:9868858-9868877 | None:intergenic | 40.0% | |
| AGGGAAGATTGAAGGTAAAG+CGG | - | chr5_1:9868890-9868909 | None:intergenic | 40.0% | |
| AAAAGGAGAGGGAAGATTGA+AGG | - | chr5_1:9868898-9868917 | None:intergenic | 40.0% | |
| ! | TCAATCTTCCCTCTCCTTTT+CGG | + | chr5_1:9868898-9868917 | Msa0716420:CDS | 40.0% |
| ACAGATGTTTCGTCGATACT+TGG | + | chr5_1:9869016-9869035 | Msa0716420:CDS | 40.0% | |
| TGTTTCGTCGATACTTGGAT+TGG | + | chr5_1:9869021-9869040 | Msa0716420:CDS | 40.0% | |
| ACTTGTAACTCTCAAGCCAA+AGG | + | chr5_1:9869496-9869515 | Msa0716420:intron | 40.0% | |
| CGTATCTAATGCCGATACTT+TGG | - | chr5_1:9869647-9869666 | None:intergenic | 40.0% | |
| !! | AAGTATCGGCATTAGATACG+AGG | + | chr5_1:9869647-9869666 | Msa0716420:intron | 40.0% |
| ! | ACTGAGATATGGATTGCAAG+GGG | - | chr5_1:9869973-9869992 | None:intergenic | 40.0% |
| ! | GACTGAGATATGGATTGCAA+GGG | - | chr5_1:9869974-9869993 | None:intergenic | 40.0% |
| ! | AGACTGAGATATGGATTGCA+AGG | - | chr5_1:9869975-9869994 | None:intergenic | 40.0% |
| !! | GACAATTTTTCGGCAATCCT+AGG | + | chr5_1:9870047-9870066 | Msa0716420:intron | 40.0% |
| GAATGCTCATAATTCGGCAA+GGG | - | chr5_1:9870154-9870173 | None:intergenic | 40.0% | |
| TGAATGCTCATAATTCGGCA+AGG | - | chr5_1:9870155-9870174 | None:intergenic | 40.0% | |
| AAGAGAGAGATGCATGAGAA+GGG | - | chr5_1:9870208-9870227 | None:intergenic | 40.0% | |
| ! | AGGGAGAGTGTGTAAGATAA+AGG | - | chr5_1:9870261-9870280 | None:intergenic | 40.0% |
| CCAAGTAGGAGAAGAGAAAA+GGG | - | chr5_1:9870280-9870299 | None:intergenic | 40.0% | |
| ACCAAGTAGGAGAAGAGAAA+AGG | - | chr5_1:9870281-9870300 | None:intergenic | 40.0% | |
| ! | TGAAATAGCAGATAGTGGTG+CGG | - | chr5_1:9870647-9870666 | None:intergenic | 40.0% |
| AATTTCAATTGCCGCCAATG+TGG | + | chr5_1:9870838-9870857 | Msa0716420:CDS | 40.0% | |
| ! | GATTTCCTTTTGTGCCACAT+TGG | - | chr5_1:9870855-9870874 | None:intergenic | 40.0% |
| ATGTGGCACAAAAGGAAATC+GGG | + | chr5_1:9870855-9870874 | Msa0716420:CDS | 40.0% | |
| CGGGAAATACATCAAGATAC+TGG | + | chr5_1:9870874-9870893 | Msa0716420:CDS | 40.0% | |
| ! | TGAAGAAGGGTGCAAAATCT+TGG | - | chr5_1:9870956-9870975 | None:intergenic | 40.0% |
| TCAGCTCAATAAATCTGCTC+AGG | + | chr5_1:9870973-9870992 | Msa0716420:CDS | 40.0% | |
| AATAAATCTGCTCAGGTACC+TGG | + | chr5_1:9870980-9870999 | Msa0716420:intron | 40.0% | |
| !! | TCACATTTTGGTGCAATTCC+AGG | - | chr5_1:9871001-9871020 | None:intergenic | 40.0% |
| GTAAAAGCAGAGCAGATATG+CGG | - | chr5_1:9871171-9871190 | None:intergenic | 40.0% | |
| TCAACCAAAGGGTTGTGTAA+TGG | + | chr5_1:9871229-9871248 | Msa0716420:CDS | 40.0% | |
| TTGTCCATTACACAACCCTT+TGG | - | chr5_1:9871236-9871255 | None:intergenic | 40.0% | |
| AATGGACAATCAGTTAGACC+TGG | + | chr5_1:9871247-9871266 | Msa0716420:CDS | 40.0% | |
| GATGTCCAATGATCACTTTG+TGG | + | chr5_1:9871277-9871296 | Msa0716420:CDS | 40.0% | |
| CACTACCACAAAGTGATCAT+TGG | - | chr5_1:9871285-9871304 | None:intergenic | 40.0% | |
| CAGTTCCTGAAATGCAATGT+AGG | - | chr5_1:9871403-9871422 | None:intergenic | 40.0% | |
| CTACATTGCATTTCAGGAAC+TGG | + | chr5_1:9871401-9871420 | Msa0716420:intron | 40.0% | |
| TTGGCAAGCCAAATATATGG+CGG | - | chr5_1:9871499-9871518 | None:intergenic | 40.0% | |
| TACTTTGCAAATTTCGGCCT+GGG | - | chr5_1:9871541-9871560 | None:intergenic | 40.0% | |
| TTACTTTGCAAATTTCGGCC+TGG | - | chr5_1:9871542-9871561 | None:intergenic | 40.0% | |
| GCCGAAATTTGCAAAGTAAC+TGG | + | chr5_1:9871543-9871562 | Msa0716420:CDS | 40.0% | |
| CCAGAAGCAATTAAGGTTGT+GGG | - | chr5_1:9871675-9871694 | None:intergenic | 40.0% | |
| TCCAGAAGCAATTAAGGTTG+TGG | - | chr5_1:9871676-9871695 | None:intergenic | 40.0% | |
| AGAACGTCCAGAAGCAATTA+AGG | - | chr5_1:9871682-9871701 | None:intergenic | 40.0% | |
| TGGACGTTCTTCAACAACTA+AGG | + | chr5_1:9871692-9871711 | Msa0716420:CDS | 40.0% | |
| ! | CTATTCAGCAGTCAACGTTT+TGG | + | chr5_1:9871829-9871848 | Msa0716420:CDS | 40.0% |
| CAAGTTCAAGCTCTGTTATG+AGG | + | chr5_1:9872027-9872046 | Msa0716420:CDS | 40.0% | |
| ATATTTGGAGGAGCAGATGA+AGG | - | chr5_1:9872068-9872087 | None:intergenic | 40.0% | |
| !! | TGCAAGTGTCGAATATTTGG+AGG | - | chr5_1:9872080-9872099 | None:intergenic | 40.0% |
| !! | GTGTGAATTTTGTTGACTGC+TGG | + | chr5_1:9872246-9872265 | Msa0716420:three_prime_UTR | 40.0% |
| CGAGACATAGGGGATTATCT+TGG | - | chr5_1:9868745-9868764 | None:intergenic | 45.0% | |
| ATCTGGTGTGACGAGACATA+GGG | - | chr5_1:9868756-9868775 | None:intergenic | 45.0% | |
| !! | TGTTGGTTTGGTTGAGAGTG+GGG | - | chr5_1:9868787-9868806 | None:intergenic | 45.0% |
| !! | GTGTTGGTTTGGTTGAGAGT+GGG | - | chr5_1:9868788-9868807 | None:intergenic | 45.0% |
| !! | TTCTTCGTTGGTTTCGGTGT+TGG | - | chr5_1:9868804-9868823 | None:intergenic | 45.0% |
| GAATGGGTCTTCTTCTTCGT+TGG | - | chr5_1:9868816-9868835 | None:intergenic | 45.0% | |
| GGGAAGATTGAAGGTAAAGC+GGG | - | chr5_1:9868889-9868908 | None:intergenic | 45.0% | |
| ! | CAATCTTCCCTCTCCTTTTC+GGG | + | chr5_1:9868899-9868918 | Msa0716420:CDS | 45.0% |
| ! | AAGGTATCCCGAAAAGGAGA+GGG | - | chr5_1:9868909-9868928 | None:intergenic | 45.0% |
| TCAAGAACCTAGAACCCTTC+AGG | + | chr5_1:9869165-9869184 | Msa0716420:CDS | 45.0% | |
| !! | CAGGGAAGCATCCAAAGTAT+CGG | + | chr5_1:9869633-9869652 | Msa0716420:intron | 45.0% |
| TTCTTCTGTGGTCCACTTCT+AGG | + | chr5_1:9869754-9869773 | Msa0716420:intron | 45.0% | |
| TCTTCTGTGGTCCACTTCTA+GGG | + | chr5_1:9869755-9869774 | Msa0716420:intron | 45.0% | |
| TGCTGCTCGTCTACATAGTT+GGG | - | chr5_1:9869801-9869820 | None:intergenic | 45.0% | |
| ATGCTGCTCGTCTACATAGT+TGG | - | chr5_1:9869802-9869821 | None:intergenic | 45.0% | |
| ACCACTCGGTTTCTTGGATT+AGG | + | chr5_1:9870078-9870097 | Msa0716420:intron | 45.0% | |
| ACCTAATCCAAGAAACCGAG+TGG | - | chr5_1:9870082-9870101 | None:intergenic | 45.0% | |
| CAAGAGAGAGATGCATGAGA+AGG | - | chr5_1:9870209-9870228 | None:intergenic | 45.0% | |
| AAAGGAAATGCGTGCAACAG+AGG | - | chr5_1:9870243-9870262 | None:intergenic | 45.0% | |
| ! | CCCTTTTCTCTTCTCCTACT+TGG | + | chr5_1:9870277-9870296 | Msa0716420:intron | 45.0% |
| TGTCAGAGAGAACACCAAGT+AGG | - | chr5_1:9870294-9870313 | None:intergenic | 45.0% | |
| AGGAAATGAAGGCAGAGCAT+AGG | - | chr5_1:9870546-9870565 | None:intergenic | 45.0% | |
| ! | GAAATAGCAGATAGTGGTGC+GGG | - | chr5_1:9870646-9870665 | None:intergenic | 45.0% |
| ! | TTCCTTTTGTGCCACATTGG+CGG | - | chr5_1:9870852-9870871 | None:intergenic | 45.0% |
| TGGCTCCTACATTGCATTTC+AGG | + | chr5_1:9871395-9871414 | Msa0716420:intron | 45.0% | |
| AGAAGACAAACGCAAAACCC+AGG | + | chr5_1:9871521-9871540 | Msa0716420:CDS | 45.0% | |
| ACAGCTGGGGTGTAATTAGA+GGG | - | chr5_1:9871633-9871652 | None:intergenic | 45.0% | |
| AACAGCTGGGGTGTAATTAG+AGG | - | chr5_1:9871634-9871653 | None:intergenic | 45.0% | |
| CCCACAACCTTAATTGCTTC+TGG | + | chr5_1:9871672-9871691 | Msa0716420:CDS | 45.0% | |
| ! | TCGGCCTCATTAGGTTTGTT+TGG | - | chr5_1:9871774-9871793 | None:intergenic | 45.0% |
| AACAAACCTAATGAGGCCGA+AGG | + | chr5_1:9871774-9871793 | Msa0716420:CDS | 45.0% | |
| ! | CTTTTACCTTCGGCCTCATT+AGG | - | chr5_1:9871783-9871802 | None:intergenic | 45.0% |
| ACTGCTGAATAGCCGATGAT+TGG | - | chr5_1:9871821-9871840 | None:intergenic | 45.0% | |
| !! | TGATGATTTTGGGTCGCACT+GGG | - | chr5_1:9871867-9871886 | None:intergenic | 45.0% |
| !! | TTGATGATTTTGGGTCGCAC+TGG | - | chr5_1:9871868-9871887 | None:intergenic | 45.0% |
| CCATTTGTGACCTCTACCAT+GGG | - | chr5_1:9871954-9871973 | None:intergenic | 45.0% | |
| ACCATTTGTGACCTCTACCA+TGG | - | chr5_1:9871955-9871974 | None:intergenic | 45.0% | |
| !! | GTCACAAATGGTGCTGGTAT+CGG | + | chr5_1:9871963-9871982 | Msa0716420:CDS | 45.0% |
| ! | AGGAGGACTGTAAAGTTGGT+TGG | - | chr5_1:9872003-9872022 | None:intergenic | 45.0% |
| AAGCAGGAGGACTGTAAAGT+TGG | - | chr5_1:9872007-9872026 | None:intergenic | 45.0% | |
| ACAGAGCTTGAACTTGAAGC+AGG | - | chr5_1:9872023-9872042 | None:intergenic | 45.0% | |
| ! | CTCTGTTATGAGGTCGCTTT+CGG | + | chr5_1:9872037-9872056 | Msa0716420:CDS | 45.0% |
| ! | CAATCGTCTAAGACAATGCC+TGG | + | chr5_1:9872098-9872117 | Msa0716420:CDS | 45.0% |
| ! | GAAGTGCCCATACTGTTCAG+CGG | + | chr5_1:9868604-9868623 | Msa0716420:CDS | 50.0% |
| ! | CGGTGGTTGTTGTTGTGCAA+CGG | - | chr5_1:9868637-9868656 | None:intergenic | 50.0% |
| CGTTGCACAACAACAACCAC+CGG | + | chr5_1:9868635-9868654 | Msa0716420:CDS | 50.0% | |
| GTGGAAGATGTGGTGAGGAT+GGG | - | chr5_1:9868714-9868733 | None:intergenic | 50.0% | |
| TCTGGTGTGACGAGACATAG+GGG | - | chr5_1:9868755-9868774 | None:intergenic | 50.0% | |
| GATCTGGTGTGACGAGACAT+AGG | - | chr5_1:9868757-9868776 | None:intergenic | 50.0% | |
| !! | TTGGTTTGGTTGAGAGTGGG+GGG | - | chr5_1:9868785-9868804 | None:intergenic | 50.0% |
| !! | GTTGGTTTGGTTGAGAGTGG+GGG | - | chr5_1:9868786-9868805 | None:intergenic | 50.0% |
| !! | GGTGTTGGTTTGGTTGAGAG+TGG | - | chr5_1:9868789-9868808 | None:intergenic | 50.0% |
| !! | CGTTGGTTTCGGTGTTGGTT+TGG | - | chr5_1:9868799-9868818 | None:intergenic | 50.0% |
| AAAGCGGTTATGAAGCCCGT+GGG | - | chr5_1:9868842-9868861 | None:intergenic | 50.0% | |
| ! | GATTGAAGGTAAAGCGGGCT+GGG | - | chr5_1:9868884-9868903 | None:intergenic | 50.0% |
| AGATTGAAGGTAAAGCGGGC+TGG | - | chr5_1:9868885-9868904 | None:intergenic | 50.0% | |
| ! | CAAGGTATCCCGAAAAGGAG+AGG | - | chr5_1:9868910-9868929 | None:intergenic | 50.0% |
| !! | CTCCTTTTCGGGATACCTTG+CGG | + | chr5_1:9868910-9868929 | Msa0716420:CDS | 50.0% |
| ! | TTCCGCAAGGTATCCCGAAA+AGG | - | chr5_1:9868915-9868934 | None:intergenic | 50.0% |
| ! | GAGTACGTTCAAGTTCCGCA+AGG | - | chr5_1:9868928-9868947 | None:intergenic | 50.0% |
| TGCTACTGCTGCTCTTGTTC+AGG | + | chr5_1:9869129-9869148 | Msa0716420:CDS | 50.0% | |
| GCTGCTCGTCTACATAGTTG+GGG | - | chr5_1:9869800-9869819 | None:intergenic | 50.0% | |
| TCGATCACCACTCGGTTTCT+TGG | + | chr5_1:9870072-9870091 | Msa0716420:intron | 50.0% | |
| GACAATCAGTTAGACCTGGC+TGG | + | chr5_1:9871251-9871270 | Msa0716420:CDS | 50.0% | |
| CAGGAACTGGCTACTCACAT+AGG | + | chr5_1:9871414-9871433 | Msa0716420:intron | 50.0% | |
| ACAAATGCTTCTGCACTCGC+AGG | + | chr5_1:9871451-9871470 | Msa0716420:CDS | 50.0% | |
| CTCAGCTGCCGCCATATATT+TGG | + | chr5_1:9871488-9871507 | Msa0716420:CDS | 50.0% | |
| TGCTCGTGCAAGCCAATCAT+CGG | + | chr5_1:9871806-9871825 | Msa0716420:CDS | 50.0% | |
| !! | CTACCATGGGTTCAGGTTGT+TGG | - | chr5_1:9871941-9871960 | None:intergenic | 50.0% |
| ACAACCTGAACCCATGGTAG+AGG | + | chr5_1:9871941-9871960 | Msa0716420:CDS | 50.0% | |
| CCCATGGTAGAGGTCACAAA+TGG | + | chr5_1:9871951-9871970 | Msa0716420:CDS | 50.0% | |
| GTAGAGGTCACAAATGGTGC+TGG | + | chr5_1:9871957-9871976 | Msa0716420:CDS | 50.0% | |
| GAGCTTGAACTTGAAGCAGG+AGG | - | chr5_1:9872020-9872039 | None:intergenic | 50.0% | |
| TTTGGAGGAGCAGATGAAGG+AGG | - | chr5_1:9872065-9872084 | None:intergenic | 50.0% | |
| CTTGCGCCGCTGAACAGTAT+GGG | - | chr5_1:9868613-9868632 | None:intergenic | 55.0% | |
| GGTGGAAGATGTGGTGAGGA+TGG | - | chr5_1:9868715-9868734 | None:intergenic | 55.0% | |
| TTTGGTTGAGAGTGGGGGGA+GGG | - | chr5_1:9868781-9868800 | None:intergenic | 55.0% | |
| AGAAGACCCATTCGAGCCCA+CGG | + | chr5_1:9868823-9868842 | Msa0716420:CDS | 55.0% | |
| GAAAGCGGTTATGAAGCCCG+TGG | - | chr5_1:9868843-9868862 | None:intergenic | 55.0% | |
| GCATGAGAAGGGAGACAGCA+AGG | - | chr5_1:9870197-9870216 | None:intergenic | 55.0% | |
| GGAAATGCGTGCAACAGAGG+AGG | - | chr5_1:9870240-9870259 | None:intergenic | 55.0% | |
| TGCCGCCAATGTGGCACAAA+AGG | + | chr5_1:9870847-9870866 | Msa0716420:CDS | 55.0% | |
| ATCAGTTAGACCTGGCTGGC+TGG | + | chr5_1:9871255-9871274 | Msa0716420:CDS | 55.0% | |
| GCGGCAGCTGAGATGCTAAT+TGG | - | chr5_1:9871480-9871499 | None:intergenic | 55.0% | |
| TTACACCCCAGCTGTTCCTC+CGG | + | chr5_1:9871638-9871657 | Msa0716420:CDS | 55.0% | |
| TTGGGTCGCACTGGGAAGTT+GGG | - | chr5_1:9871859-9871878 | None:intergenic | 55.0% | |
| TTTGGGTCGCACTGGGAAGT+TGG | - | chr5_1:9871860-9871879 | None:intergenic | 55.0% | |
| !! | CCATGGGTTCAGGTTGTTGG+TGG | - | chr5_1:9871938-9871957 | None:intergenic | 55.0% |
| CCACCAACAACCTGAACCCA+TGG | + | chr5_1:9871935-9871954 | Msa0716420:CDS | 55.0% | |
| GTGACCTCTACCATGGGTTC+AGG | - | chr5_1:9871948-9871967 | None:intergenic | 55.0% | |
| CCTTGCGCCGCTGAACAGTA+TGG | - | chr5_1:9868614-9868633 | None:intergenic | 60.0% | |
| CCATACTGTTCAGCGGCGCA+AGG | + | chr5_1:9868611-9868630 | Msa0716420:CDS | 60.0% | |
| CGCAGGTGGAAGATGTGGTG+AGG | - | chr5_1:9868719-9868738 | None:intergenic | 60.0% | |
| GATTATCTTGGGCGCGCAGG+TGG | - | chr5_1:9868733-9868752 | None:intergenic | 60.0% | |
| GTTTGGTTGAGAGTGGGGGG+AGG | - | chr5_1:9868782-9868801 | None:intergenic | 60.0% | |
| GAAGACCCATTCGAGCCCAC+GGG | + | chr5_1:9868824-9868843 | Msa0716420:CDS | 60.0% | |
| TGAAGCCCGTGGGCTCGAAT+GGG | - | chr5_1:9868832-9868851 | None:intergenic | 60.0% | |
| ATGAAGCCCGTGGGCTCGAA+TGG | - | chr5_1:9868833-9868852 | None:intergenic | 60.0% | |
| !! | GTAAAGCGGGCTGGGCTCTA+AGG | - | chr5_1:9868876-9868895 | None:intergenic | 60.0% |
| CCTAGGGCTCGATCACCACT+CGG | + | chr5_1:9870064-9870083 | Msa0716420:intron | 60.0% | |
| CATTGGACATCCAGCCAGCC+AGG | - | chr5_1:9871268-9871287 | None:intergenic | 60.0% | |
| GTTGTGGGAAATGCCCGCTC+CGG | - | chr5_1:9871660-9871679 | None:intergenic | 60.0% | |
| GGGGATTATCTTGGGCGCGC+AGG | - | chr5_1:9868736-9868755 | None:intergenic | 65.0% | |
| AGAGTGGGGGGAGGGAGATC+TGG | - | chr5_1:9868773-9868792 | None:intergenic | 65.0% | |
| CCGAGTGGTGATCGAGCCCT+AGG | - | chr5_1:9870067-9870086 | None:intergenic | 65.0% | |
| GGGCGCGCAGGTGGAAGATG+TGG | - | chr5_1:9868724-9868743 | None:intergenic | 70.0% | |
| CCGCTCCGGAGGAACAGCTG+GGG | - | chr5_1:9871646-9871665 | None:intergenic | 70.0% | |
| CCCCAGCTGTTCCTCCGGAG+CGG | + | chr5_1:9871643-9871662 | Msa0716420:CDS | 70.0% | |
| CCCGCTCCGGAGGAACAGCT+GGG | - | chr5_1:9871647-9871666 | None:intergenic | 70.0% | |
| CCCAGCTGTTCCTCCGGAGC+GGG | + | chr5_1:9871644-9871663 | Msa0716420:CDS | 70.0% | |
| GTGGGAAATGCCCGCTCCGG+AGG | - | chr5_1:9871657-9871676 | None:intergenic | 70.0% | |
| GCCCGCTCCGGAGGAACAGC+TGG | - | chr5_1:9871648-9871667 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9868548 | 9872370 | 9868548 | ID=Msa0716420;Name=Msa0716420 |
| chr5_1 | mRNA | 9868548 | 9872370 | 9868548 | ID=Msa0716420-mRNA-1;Parent=Msa0716420;Name=Msa0716420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=54|0.33|0.75|0.75|1|1|4|234|522 |
| chr5_1 | exon | 9868548 | 9869186 | 9868548 | ID=Msa0716420-mRNA-1:exon:3897;Parent=Msa0716420-mRNA-1 |
| chr5_1 | exon | 9870836 | 9870994 | 9870836 | ID=Msa0716420-mRNA-1:exon:3898;Parent=Msa0716420-mRNA-1 |
| chr5_1 | exon | 9871194 | 9871298 | 9871194 | ID=Msa0716420-mRNA-1:exon:3899;Parent=Msa0716420-mRNA-1 |
| chr5_1 | exon | 9871417 | 9872370 | 9871417 | ID=Msa0716420-mRNA-1:exon:3900;Parent=Msa0716420-mRNA-1 |
| chr5_1 | five_prime_UTR | 9868548 | 9868601 | 9868548 | ID=Msa0716420-mRNA-1:five_prime_utr;Parent=Msa0716420-mRNA-1 |
| chr5_1 | CDS | 9868602 | 9869186 | 9868602 | ID=Msa0716420-mRNA-1:cds;Parent=Msa0716420-mRNA-1 |
| chr5_1 | CDS | 9870836 | 9870994 | 9870836 | ID=Msa0716420-mRNA-1:cds;Parent=Msa0716420-mRNA-1 |
| chr5_1 | CDS | 9871194 | 9871298 | 9871194 | ID=Msa0716420-mRNA-1:cds;Parent=Msa0716420-mRNA-1 |
| chr5_1 | CDS | 9871417 | 9872136 | 9871417 | ID=Msa0716420-mRNA-1:cds;Parent=Msa0716420-mRNA-1 |
| chr5_1 | three_prime_UTR | 9872137 | 9872370 | 9872137 | ID=Msa0716420-mRNA-1:three_prime_utr;Parent=Msa0716420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
