AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140520 MtrunA17_Chr3g0135621 97.355 605 16 0 1 605 1 605 0.0 1132
Msa0140520 MtrunA17_Chr3g0135631 96.030 403 16 0 203 605 1 403 0.0 682
Msa0140520 MtrunA17_Chr1g0151761 61.252 671 150 19 1 605 1 627 0.0 598
Msa0140520 MtrunA17_Chr3g0135641 98.942 189 2 0 1 189 1 189 1.66e-131 383
Msa0140520 MtrunA17_Chr3g0135641 46.377 69 34 2 182 249 90 156 7.84e-13 67.8
Msa0140520 MtrunA17_Chr5g0396111 56.069 173 72 1 82 250 181 353 6.21e-58 199
Msa0140520 MtrunA17_Chr7g0217251 27.010 311 153 16 68 346 141 409 5.42e-12 68.9
Msa0140520 MtrunA17_Chr1g0197441 29.032 217 123 6 89 291 39 238 1.12e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140520 AT2G25970.1 53.546 564 181 21 26 553 66 584 6.23e-131 398
Msa0140520 AT1G33680.1 36.170 564 249 28 86 599 232 734 1.49e-55 201
Msa0140520 AT4G10070.1 44.961 258 124 7 82 328 172 422 3.21e-52 191
Msa0140520 AT5G04430.2 30.288 208 125 7 89 289 38 232 1.27e-13 72.8
Msa0140520 AT5G04430.1 31.548 168 102 4 89 253 38 195 2.67e-12 68.6

Find 265 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGCCATTTGCAGAATT+TGG 0.147696 1_3:+74773000 Msa0140520:three_prime_UTR
TCTAGCCAGGCCCCGCCTTC+TGG 0.193239 1_3:+74771623 Msa0140520:CDS
GGTAGGGTTGGTGTTCTTAT+TGG 0.218158 1_3:+74768175 Msa0140520:CDS
TTCTACCGGGGCACGAATTC+AGG 0.220193 1_3:+74769520 Msa0140520:CDS
GGAACTTCGCAGTTCATTTC+AGG 0.227165 1_3:-74772980 None:intergenic
GACTAGGATGGTTGAACTTA+TGG 0.236098 1_3:+74768288 Msa0140520:CDS
CATAGATGTTGCTATCAAAA+TGG 0.245666 1_3:-74771936 None:intergenic
CAGAATCGTCTCAGAAATTC+AGG 0.249484 1_3:+74770813 Msa0140520:intron
CAGTAGTGGGTTGGGAAGTT+TGG 0.252253 1_3:-74771382 None:intergenic
CTCCTCCTTTACCGATTATA+AGG 0.263800 1_3:-74769475 None:intergenic
TAGGCTGAAGCTGGGGCTTC+TGG 0.266896 1_3:+74769280 Msa0140520:intron
TAATGGTTATTATCGTCCTT+TGG 0.283838 1_3:+74771889 Msa0140520:three_prime_UTR
GGTTGGTAGCATAGCCTTGC+TGG 0.287848 1_3:-74771409 None:intergenic
ATTACTCCCACTGCCATAAC+TGG 0.291727 1_3:-74771309 None:intergenic
CTCCATAGGGTTTGTTTCAA+TGG 0.297537 1_3:+74767874 Msa0140520:exon
AGACGGATGGTTGCACAATC+TGG 0.309169 1_3:+74769313 Msa0140520:CDS
ACCATCCTAGTCTGAGAATT+AGG 0.309685 1_3:-74768277 None:intergenic
CTTTCTGTTGATGTATCACC+TGG 0.313635 1_3:-74769731 None:intergenic
TCTCCCCACACCTTATTGTT+TGG 0.320962 1_3:-74769361 None:intergenic
AGTAGTGGGTTGGGAAGTTT+GGG 0.330555 1_3:-74771381 None:intergenic
TCATATGGAAATAGTTCTTA+TGG 0.338429 1_3:+74771758 Msa0140520:CDS
GAAACTCCTCAACCAGGTTA+TGG 0.345359 1_3:+74771437 Msa0140520:CDS
CTTTAGGTTGGCCTTATAAT+CGG 0.348223 1_3:+74769464 Msa0140520:intron
GACTGACCATAGCCTCCTGC+TGG 0.350562 1_3:-74771590 None:intergenic
TATAATGCGCAACAACAATC+TGG 0.353841 1_3:+74771236 Msa0140520:CDS
CCGGTGGATATTCCGCCAAC+TGG 0.354362 1_3:+74771015 Msa0140520:CDS
AACCTCCTTCCTCTGGTTAT+AGG 0.356288 1_3:+74771174 Msa0140520:CDS
TTTGCTGTTGCTGGGGTTGT+TGG 0.358645 1_3:-74771100 None:intergenic
GTTATCGGACTTGGTTCGTT+TGG 0.360575 1_3:-74768053 None:intergenic
AACTTCTTGAGCTCGTTGTT+TGG 0.361408 1_3:-74767981 None:intergenic
GAAGCTGGGGCTTCTGGCGG+TGG 0.361827 1_3:+74769286 Msa0140520:CDS
AGTGCAAATCCACCTGCTTA+TGG 0.362303 1_3:+74771548 Msa0140520:CDS
TTTGCTGATTCAATTTGATC+AGG 0.363459 1_3:-74769776 None:intergenic
AATGGTTATTATCGTCCTTT+GGG 0.363624 1_3:+74771890 Msa0140520:three_prime_UTR
AGTTGGAAGTGTGCCCCTCT+TGG 0.365119 1_3:-74771337 None:intergenic
GATTCAAGTTACTCGTGATA+TGG 0.369842 1_3:+74768246 Msa0140520:CDS
GTGTGGGAAGGAGTTGGATT+AGG 0.370858 1_3:-74767831 None:intergenic
CCATAGGCCGCTTGGGAGGT+AGG 0.372582 1_3:-74771467 None:intergenic
TTTATTAACTAGGCTGAAGC+TGG 0.373039 1_3:+74769271 Msa0140520:intron
GAGGGGCACACTTCCAACTA+TGG 0.374400 1_3:+74771341 Msa0140520:CDS
CCTGCACAACAAGCTGGTTA+TGG 0.376085 1_3:+74770906 Msa0140520:CDS
GATGCAAATACCAAACAATA+AGG 0.377129 1_3:+74769351 Msa0140520:CDS
TTATCGGACTTGGTTCGTTT+GGG 0.378392 1_3:-74768052 None:intergenic
ACCGTGGAATAAATGTTAAA+AGG 0.380516 1_3:+74773027 Msa0140520:three_prime_UTR
TGGTTATAGGCAACCTGGAC+AGG 0.386233 1_3:+74771187 Msa0140520:CDS
GAGTTCGATGTCCGTGGCGG+TGG 0.387307 1_3:-74767945 None:intergenic
AAACTCCTCAACCAGGTTAT+GGG 0.389331 1_3:+74771438 Msa0140520:CDS
TGTTGCTGATCATATGTTTG+TGG 0.391746 1_3:-74771269 None:intergenic
GTTGGTGTTCTTATTGGTAA+AGG 0.399271 1_3:+74768181 Msa0140520:CDS
TGGAGCACCGTTATCGGACT+TGG 0.399369 1_3:-74768062 None:intergenic
CCTACCTCCCAAGCGGCCTA+TGG 0.399491 1_3:+74771467 Msa0140520:CDS
TTCCATATGACGGTGGAGTC+TGG 0.403625 1_3:-74771745 None:intergenic
CCCCAGCAACAGCAAAATCC+TGG 0.404109 1_3:+74771107 Msa0140520:CDS
AGTCAACCACAGTCTGGTTA+TGG 0.407882 1_3:+74771491 Msa0140520:CDS
GGCCAGACTCCACCGTCATA+TGG 0.410070 1_3:+74771743 Msa0140520:CDS
TATGATCAGCAACAAGGTTA+TGG 0.411167 1_3:+74771278 Msa0140520:CDS
AACTGCACAGGCTGTTCCAC+AGG 0.415355 1_3:+74771823 Msa0140520:CDS
AATCCCGACCACCGTCTAGC+TGG 0.415564 1_3:+74770868 Msa0140520:CDS
CATAGGCCGCTTGGGAGGTA+GGG 0.417451 1_3:-74771466 None:intergenic
CATATCCAGAAGGCGGGGCC+TGG 0.418708 1_3:-74771628 None:intergenic
ACTAGGATGGTTGAACTTAT+GGG 0.418819 1_3:+74768289 Msa0140520:CDS
GCTTGTTGTGCAGGAGCAGC+AGG 0.419616 1_3:-74770897 None:intergenic
TCTGGTTATGGACCTGGTTA+TGG 0.421938 1_3:+74771503 Msa0140520:CDS
CTGGTTGAGGAGTTTCTTGT+TGG 0.423458 1_3:-74771430 None:intergenic
TATGGCTCTGCTCCCAGTTA+TGG 0.425707 1_3:+74771296 Msa0140520:CDS
TTCACTTTCTTCCTCTCCAT+AGG 0.427389 1_3:+74767860 Msa0140520:five_prime_UTR
GGTCCTCCACAACCAGCTGA+TGG 0.427847 1_3:+74771131 Msa0140520:CDS
AGGCAACCTGGACAGGGTTA+TGG 0.428875 1_3:+74771194 Msa0140520:CDS
CCATAGCCTCCTGCTGGGCT+AGG 0.435681 1_3:-74771584 None:intergenic
CTGGGCAACAGTAGTGGGTT+GGG 0.439592 1_3:-74771390 None:intergenic
CAACAAGCTGGTTATGGCTA+TGG 0.440407 1_3:+74770912 Msa0140520:CDS
TATTATCGTCCTTTGGGATG+TGG 0.443967 1_3:+74771896 Msa0140520:three_prime_UTR
CGATTGTGGAGCACCGTTAT+CGG 0.444219 1_3:-74768068 None:intergenic
GACGGATGGTTGCACAATCT+GGG 0.446354 1_3:+74769314 Msa0140520:CDS
CGATAACGGTGCTCCACAAT+CGG 0.446619 1_3:+74768069 Msa0140520:CDS
TTTGATAGCAACATCTATGT+TGG 0.448394 1_3:+74771940 Msa0140520:three_prime_UTR
GAGTCTGGCCATAGCTAGGC+TGG 0.448899 1_3:-74771730 None:intergenic
ATAGATGTTGCTATCAAAAT+GGG 0.453719 1_3:-74771935 None:intergenic
GTTGACTTCCATAGGCCGCT+TGG 0.454305 1_3:-74771475 None:intergenic
AGCCCAGCTAGACGGTGGTC+GGG 0.454864 1_3:-74770871 None:intergenic
CCATAACCAGCTTGTTGTGC+AGG 0.455611 1_3:-74770906 None:intergenic
TTGACTTCCATAGGCCGCTT+GGG 0.461597 1_3:-74771474 None:intergenic
AGCTAGACGGTGGTCGGGAT+TGG 0.461750 1_3:-74770866 None:intergenic
AATTGAATCAGCAAAGCAAT+TGG 0.464801 1_3:+74769784 Msa0140520:CDS
AAGTATCTTCAGATGCAATC+TGG 0.464861 1_3:+74768217 Msa0140520:CDS
AGAACACCAACCCTACCATT+AGG 0.466222 1_3:-74768169 None:intergenic
AGAAGGCGGGGCCTGGCTAG+AGG 0.466470 1_3:-74771621 None:intergenic
TCCTGACCATAACCCTGTCC+AGG 0.466770 1_3:-74771200 None:intergenic
TACAGTCAACCTCCTTCCTC+TGG 0.467231 1_3:+74771167 Msa0140520:CDS
GATAACGGTGCTCCACAATC+GGG 0.467332 1_3:+74768070 Msa0140520:CDS
GTTGGAAGTGTGCCCCTCTT+GGG 0.469268 1_3:-74771336 None:intergenic
TCACTTTCTTCCTCTCCATA+GGG 0.472195 1_3:+74767861 Msa0140520:five_prime_UTR
TTGCTGATTCAATTTGATCA+GGG 0.472599 1_3:-74769775 None:intergenic
TCGCAGCAAGGTGGTAGTTA+TGG 0.474269 1_3:+74768124 Msa0140520:CDS
AAGAAGATTGAAATACCTAA+TGG 0.476293 1_3:+74768154 Msa0140520:CDS
GTCCTCCACAACCAGCTGAT+GGG 0.476711 1_3:+74771132 Msa0140520:CDS
GAAGTGTGCCCCTCTTGGGT+TGG 0.479594 1_3:-74771332 None:intergenic
TTATGGTGCTAGTTATGCTC+AGG 0.481239 1_3:+74771775 Msa0140520:CDS
GTTGCGCCAAATTCTGCAAA+TGG 0.484612 1_3:-74773006 None:intergenic
GAAGGCGGGGCCTGGCTAGA+GGG 0.486048 1_3:-74771620 None:intergenic
GGGTATGGTCCGCAATCATA+TGG 0.486408 1_3:+74771692 Msa0140520:CDS
GGTTATGGCTATGGGCAACC+TGG 0.488138 1_3:+74770921 Msa0140520:CDS
CCTAGCCCAGCAGGAGGCTA+TGG 0.490924 1_3:+74771584 Msa0140520:CDS
AAGAGTATGCAAGCTTCTAC+CGG 0.492893 1_3:+74769506 Msa0140520:CDS
CGCCATTGAAACAAACCCTA+TGG 0.493826 1_3:-74767876 None:intergenic
GCTGAGCATATCCAGAAGGC+GGG 0.493910 1_3:-74771634 None:intergenic
GCAGACCCATCAGCTGGTTG+TGG 0.495061 1_3:-74771137 None:intergenic
ACCTGGACAGGGTTATGGTC+AGG 0.497241 1_3:+74771199 Msa0140520:CDS
CTTCTGGCGGTGGCACTAGA+CGG 0.497957 1_3:+74769296 Msa0140520:CDS
GATGGACCAGAGTATGATCC+AGG 0.501151 1_3:-74770939 None:intergenic
TCACAGTCACCTAGCCCAGC+AGG 0.505105 1_3:+74771575 Msa0140520:CDS
TTCTGTTGATGTATCACCTG+GGG 0.507849 1_3:-74769729 None:intergenic
CCCAGCAACAGCAAAATCCT+GGG 0.508607 1_3:+74771108 Msa0140520:CDS
GTTGGTAGCATAGCCTTGCT+GGG 0.508853 1_3:-74771408 None:intergenic
CTGCTCCCAGTTATGGCAGT+GGG 0.512052 1_3:+74771303 Msa0140520:CDS
TTGAGGAGTTTCTTGTTGGT+TGG 0.513013 1_3:-74771426 None:intergenic
TATGGAAGTCAACCACAGTC+TGG 0.513429 1_3:+74771485 Msa0140520:CDS
TGCTGATTCAATTTGATCAG+GGG 0.517465 1_3:-74769774 None:intergenic
ATCTGCTTGTGATCCATAGT+TGG 0.518728 1_3:-74771354 None:intergenic
CTTGGTTCGTTTGGGATCGT+AGG 0.519590 1_3:-74768044 None:intergenic
GAAATACCTAATGGTAGGGT+TGG 0.520361 1_3:+74768163 Msa0140520:CDS
GTTGGCCTTATAATCGGTAA+AGG 0.521991 1_3:+74769470 Msa0140520:CDS
CCAGTTGGCGGAATATCCAC+CGG 0.522965 1_3:-74771015 None:intergenic
CAAGGTGGCCAGCCTAGCTA+TGG 0.524469 1_3:+74771722 Msa0140520:CDS
TCAGCAGAAGAAACAGCGTC+AGG 0.524572 1_3:-74768316 None:intergenic
ATAGGCCGCTTGGGAGGTAG+GGG 0.527994 1_3:-74771465 None:intergenic
GCCTTGCTGGGCAACAGTAG+TGG 0.528254 1_3:-74771396 None:intergenic
GCACCAGTGCAACCAGGGTA+TGG 0.529757 1_3:+74771677 Msa0140520:CDS
AGTTCGATGTCCGTGGCGGT+GGG 0.530955 1_3:-74767944 None:intergenic
ATCCCGACCACCGTCTAGCT+GGG 0.531596 1_3:+74770869 Msa0140520:CDS
AACAAGCTGGTTATGGCTAT+GGG 0.531625 1_3:+74770913 Msa0140520:CDS
GCTCTATGAGTGCCTAACTC+TGG 0.531849 1_3:-74771656 None:intergenic
AGTCGATTGGTCCCAGTTGG+CGG 0.531961 1_3:-74771027 None:intergenic
TATCCACCGGGTTGCTGAGG+AGG 0.532429 1_3:-74771002 None:intergenic
TCCTCTGGTTATAGGCAACC+TGG 0.532856 1_3:+74771182 Msa0140520:CDS
GTCAGCATATCCCTCTAGCC+AGG 0.533284 1_3:+74771610 Msa0140520:CDS
GAGCCCAGCTAGACGGTGGT+CGG 0.534258 1_3:-74770872 None:intergenic
GGTGGAGTCTGGCCATAGCT+AGG 0.535763 1_3:-74771734 None:intergenic
GGTGTTCTTATTGGTAAAGG+AGG 0.535918 1_3:+74768184 Msa0140520:CDS
GCTGAAGCTGGGGCTTCTGG+CGG 0.536744 1_3:+74769283 Msa0140520:CDS
GGATATGCTCAGCCAGAGTT+AGG 0.536855 1_3:+74771644 Msa0140520:CDS
GCAGGAGGAGCCCAGCTAGA+CGG 0.538714 1_3:-74770879 None:intergenic
TTATTAACTAGGCTGAAGCT+GGG 0.541792 1_3:+74769272 Msa0140520:intron
GCTGCTCCTGCACAACAAGC+TGG 0.542982 1_3:+74770900 Msa0140520:CDS
TCTGCTCCCAGTTATGGCAG+TGG 0.543356 1_3:+74771302 Msa0140520:CDS
CATAGAGCACCAGTGCAACC+AGG 0.543863 1_3:+74771671 Msa0140520:CDS
ATGCCTCAGCCACCATATGC+AGG 0.544233 1_3:+74770975 Msa0140520:CDS
AGAGTATGCAAGCTTCTACC+GGG 0.546430 1_3:+74769507 Msa0140520:CDS
GCTGGGCAACAGTAGTGGGT+TGG 0.546458 1_3:-74771391 None:intergenic
GACCCATCAGCTGGTTGTGG+AGG 0.546901 1_3:-74771134 None:intergenic
GCTCGTCTTCTCAGCGTCAC+CGG 0.548114 1_3:+74768007 Msa0140520:CDS
TTTCTGTTGATGTATCACCT+GGG 0.548846 1_3:-74769730 None:intergenic
CTGATCCTAATTCTCAGACT+AGG 0.549418 1_3:+74768272 Msa0140520:CDS
TGAGGAGGATAGCCTGCATA+TGG 0.549695 1_3:-74770987 None:intergenic
TAAGCAGGTGGATTTGCACT+TGG 0.550457 1_3:-74771545 None:intergenic
TAGCGATGGAGCAACTGCAC+AGG 0.553254 1_3:+74771811 Msa0140520:CDS
AACACGGTGTGGGAAGGAGT+TGG 0.553845 1_3:-74767837 None:intergenic
TAGCCTGCATATGGTGGCTG+AGG 0.553849 1_3:-74770978 None:intergenic
GGACCATACCCTGGTTGCAC+TGG 0.555058 1_3:-74771680 None:intergenic
GGCTATCCTCCTCAGCAACC+CGG 0.555442 1_3:+74770996 Msa0140520:CDS
AGTGGGTTGGGAAGTTTGGG+AGG 0.555622 1_3:-74771378 None:intergenic
AGATTGAAATACCTAATGGT+AGG 0.556097 1_3:+74768158 Msa0140520:CDS
AAACGAACCAAGTCCGATAA+CGG 0.556846 1_3:+74768055 Msa0140520:CDS
TTGGTTAATCAAATCCTCAC+TGG 0.558998 1_3:+74769803 Msa0140520:CDS
CCACAGTCTGGTTATGGACC+TGG 0.560474 1_3:+74771497 Msa0140520:CDS
GCGCAACAACAATCTGGGTA+TGG 0.561377 1_3:+74771242 Msa0140520:CDS
CGGTGGATATTCCGCCAACT+GGG 0.563001 1_3:+74771016 Msa0140520:CDS
GAGGGAGGAGCACCATAACC+AGG 0.563328 1_3:-74771515 None:intergenic
CTCAGAAATTCAGGGAACTC+AGG 0.566464 1_3:+74770822 Msa0140520:CDS
GCTCCATCGCTAGCATACGC+TGG 0.567046 1_3:-74771800 None:intergenic
CTTAACAGTACTGAGAGATA+CGG 0.570905 1_3:+74772917 Msa0140520:intron
CACTTGCATGAGTAGACTGC+TGG 0.572808 1_3:-74771061 None:intergenic
TAAGAATCAAACCCCGATTG+TGG 0.574402 1_3:-74768082 None:intergenic
TAGCTAGGCTGGCCACCTTG+AGG 0.574664 1_3:-74771719 None:intergenic
GTAGGAGAGTGGTGGAGCGC+CGG 0.574920 1_3:-74768026 None:intergenic
CCTTGCTGGGCAACAGTAGT+GGG 0.574987 1_3:-74771395 None:intergenic
AGAATCGTCTCAGAAATTCA+GGG 0.575702 1_3:+74770814 Msa0140520:intron
GGGAGTAATCCAACCCAAGA+GGG 0.576300 1_3:+74771323 Msa0140520:CDS
ACTGACCATAGCCTCCTGCT+GGG 0.577432 1_3:-74771589 None:intergenic
GGCTGAGCATATCCAGAAGG+CGG 0.579823 1_3:-74771635 None:intergenic
GCTCCAGCGTATGCTAGCGA+TGG 0.580238 1_3:+74771797 Msa0140520:CDS
GGCATGTTATACTGCGGTGA+TGG 0.581623 1_3:-74770957 None:intergenic
CAATCATATGGTGCTCCTCA+AGG 0.582124 1_3:+74771704 Msa0140520:CDS
GAATATCCACCGGGTTGCTG+AGG 0.583120 1_3:-74771005 None:intergenic
TGAGTAGACTGCTGGTGAGA+TGG 0.584276 1_3:-74771053 None:intergenic
GCTACCCCATAACCTGGTTG+AGG 0.585519 1_3:-74771443 None:intergenic
GATTGAAATACCTAATGGTA+GGG 0.585821 1_3:+74768159 Msa0140520:CDS
AGCAGTCGATTGGTCCCAGT+TGG 0.586343 1_3:-74771030 None:intergenic
CTGTATGCAGACCCATCAGC+TGG 0.587306 1_3:-74771143 None:intergenic
GGGCAACCTGGATCATACTC+TGG 0.588895 1_3:+74770933 Msa0140520:CDS
TGGCGGTGGCACTAGACGGA+TGG 0.589779 1_3:+74769300 Msa0140520:CDS
GCCAAATTCTGCAAATGGCA+TGG 0.590256 1_3:-74773001 None:intergenic
CCCACTACTGTTGCCCAGCA+AGG 0.593544 1_3:+74771395 Msa0140520:CDS
TGCAGAATTTGGCGCAACCG+TGG 0.594637 1_3:+74773011 Msa0140520:three_prime_UTR
GGTTATAGGCAACCTGGACA+GGG 0.595134 1_3:+74771188 Msa0140520:CDS
TTACTCCCACTGCCATAACT+GGG 0.595665 1_3:-74771308 None:intergenic
AACTCCTCAACCAGGTTATG+GGG 0.596098 1_3:+74771439 Msa0140520:CDS
ATAATGCGCAACAACAATCT+GGG 0.598425 1_3:+74771237 Msa0140520:CDS
CGTTTGGGATCGTAGGAGAG+TGG 0.599323 1_3:-74768037 None:intergenic
ACGGATGGTTGCACAATCTG+GGG 0.600123 1_3:+74769315 Msa0140520:CDS
AGTGAAAACACGGTGTGGGA+AGG 0.605750 1_3:-74767843 None:intergenic
TGTTGTGCAGGAGCAGCAGG+AGG 0.605854 1_3:-74770894 None:intergenic
GACTGTGATTGACCATAAGC+AGG 0.606917 1_3:-74771560 None:intergenic
GAAAACCTGAATTCGTGCCC+CGG 0.608473 1_3:-74769525 None:intergenic
TCCTAATTCTCAGACTAGGA+TGG 0.609354 1_3:+74768276 Msa0140520:CDS
CAGTTGGCGGAATATCCACC+GGG 0.609806 1_3:-74771014 None:intergenic
GGTGAGATGGAGCAGTCGAT+TGG 0.609946 1_3:-74771040 None:intergenic
CCACCTTGCTGCGAGTATTG+CGG 0.611213 1_3:-74768115 None:intergenic
GAGTATGCAAGCTTCTACCG+GGG 0.611864 1_3:+74769508 Msa0140520:CDS
CATAGGGTTTGTTTCAATGG+CGG 0.614613 1_3:+74767877 Msa0140520:exon
TAAGAACTATTTCCATATGA+CGG 0.615919 1_3:-74771755 None:intergenic
CATCAATGAAGTCCTTGCTG+AGG 0.616712 1_3:+74768345 Msa0140520:CDS
GGTTATGGTCAGGAAAGCTA+TGG 0.616846 1_3:+74771209 Msa0140520:CDS
TTGGGATCGTAGGAGAGTGG+TGG 0.618282 1_3:-74768034 None:intergenic
GTAGGGGCTACCCCATAACC+TGG 0.621045 1_3:-74771449 None:intergenic
AGAAAGTGAAAACACGGTGT+GGG 0.622964 1_3:-74767847 None:intergenic
CAGCAGTCTACTCATGCAAG+TGG 0.623206 1_3:+74771062 Msa0140520:CDS
GGAGGAGCCCAGCTAGACGG+TGG 0.623688 1_3:-74770876 None:intergenic
AGACTGTGGTTGACTTCCAT+AGG 0.624998 1_3:-74771483 None:intergenic
TAATCAAATCCTCACTGGTG+AGG 0.625790 1_3:+74769808 Msa0140520:CDS
TCTGTTGATGTATCACCTGG+GGG 0.627155 1_3:-74769728 None:intergenic
ACTTCCATAGGCCGCTTGGG+AGG 0.629551 1_3:-74771471 None:intergenic
GGAGGATAGCCTGCATATGG+TGG 0.632205 1_3:-74770984 None:intergenic
TATGATTGCGGACCATACCC+TGG 0.632611 1_3:-74771689 None:intergenic
GGCCTTATAATCGGTAAAGG+AGG 0.635849 1_3:+74769473 Msa0140520:CDS
GACTTCGAGTTCGATGTCCG+TGG 0.636506 1_3:-74767951 None:intergenic
TCAGGTGGTTATACTCAGCA+AGG 0.636998 1_3:+74770840 Msa0140520:CDS
CAACAAGAAACTCCTCAACC+AGG 0.638274 1_3:+74771431 Msa0140520:CDS
CAAACATATGATCAGCAACA+AGG 0.642194 1_3:+74771272 Msa0140520:CDS
TATTAACTAGGCTGAAGCTG+GGG 0.642830 1_3:+74769273 Msa0140520:intron
CGATGAACAACCCACCGCCA+CGG 0.645490 1_3:+74767934 Msa0140520:CDS
AAGAAAGTGAAAACACGGTG+TGG 0.646849 1_3:-74767848 None:intergenic
AAGCCGCAATACTCGCAGCA+AGG 0.647111 1_3:+74768112 Msa0140520:CDS
GATGTTGCTATCAAAATGGG+AGG 0.647415 1_3:-74771932 None:intergenic
GGTTGCCTATAACCAGAGGA+AGG 0.649293 1_3:-74771179 None:intergenic
ACTGCACAGGCTGTTCCACA+GGG 0.651647 1_3:+74771824 Msa0140520:CDS
CTGAGCATATCCAGAAGGCG+GGG 0.654248 1_3:-74771633 None:intergenic
TCCAGGTTGCCTATAACCAG+AGG 0.654374 1_3:-74771183 None:intergenic
TCTGGCTGAGCATATCCAGA+AGG 0.655491 1_3:-74771638 None:intergenic
AAATTAAAACCACATCCCAA+AGG 0.657609 1_3:-74771905 None:intergenic
TTGAAACAAACCCTATGGAG+AGG 0.659816 1_3:-74767871 None:intergenic
ATAGAGCACCAGTGCAACCA+GGG 0.660833 1_3:+74771672 Msa0140520:CDS
AGAAATTCAGGGAACTCAGG+TGG 0.665666 1_3:+74770825 Msa0140520:CDS
TGCCTATAACCAGAGGAAGG+AGG 0.666033 1_3:-74771176 None:intergenic
CGGATGGTTGCACAATCTGG+GGG 0.666739 1_3:+74769316 Msa0140520:CDS
CCAGCAACAGCAAAATCCTG+GGG 0.670269 1_3:+74771109 Msa0140520:CDS
TGAGGAGCACCATATGATTG+CGG 0.676376 1_3:-74771701 None:intergenic
TTCGAGTTCGATGTCCGTGG+CGG 0.677834 1_3:-74767948 None:intergenic
CAGTCACCTAGCCCAGCAGG+AGG 0.679822 1_3:+74771578 Msa0140520:CDS
TGGGAGTAATCCAACCCAAG+AGG 0.681350 1_3:+74771322 Msa0140520:CDS
ATAACGGTGCTCCACAATCG+GGG 0.686584 1_3:+74768071 Msa0140520:CDS
GGAGTAATCCAACCCAAGAG+GGG 0.687207 1_3:+74771324 Msa0140520:CDS
CCGCAATACTCGCAGCAAGG+TGG 0.697265 1_3:+74768115 Msa0140520:CDS
ACTTTAGCAACACTGCCCTG+TGG 0.699397 1_3:-74771839 None:intergenic
AGAGGAAGAAAGTGAAAACA+CGG 0.703419 1_3:-74767853 None:intergenic
TCATATGGTGCTCCTCAAGG+TGG 0.706407 1_3:+74771707 Msa0140520:CDS
GAACTATTTCCATATGACGG+TGG 0.711749 1_3:-74771752 None:intergenic
TGTGATTGACCATAAGCAGG+TGG 0.719303 1_3:-74771557 None:intergenic
TATCCTCCTCAGCAACCCGG+TGG 0.720805 1_3:+74770999 Msa0140520:CDS
GGTGACGCTGAGAAGACGAG+CGG 0.728767 1_3:-74768005 None:intergenic
CCAGGTCCATAACCAGACTG+TGG 0.734270 1_3:-74771497 None:intergenic
CAGCAACAGCAAAATCCTGG+GGG 0.736266 1_3:+74771110 Msa0140520:CDS
GGTAGCCCCTACCTCCCAAG+CGG 0.739424 1_3:+74771460 Msa0140520:CDS
GGCTGAGGCATGTTATACTG+CGG 0.750903 1_3:-74770963 None:intergenic
GATAACATACCTCACCAGTG+AGG 0.751081 1_3:-74769817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATGACTAATTTTTAT+TGG + chr1_3:74770665-74770684 Msa0140520:intron 10.0%
!!! TTTTTTTATACTCTTGTTTA+CGG + chr1_3:74768371-74768390 Msa0140520:intron 15.0%
!! ATATTGGTAAAAAGTTAAAA+CGG - chr1_3:74769675-74769694 None:intergenic 15.0%
!!! AATTTTAAACTTAAGAGATT+TGG - chr1_3:74769891-74769910 None:intergenic 15.0%
!!! ATCTCTTAAGTTTAAAATTA+TGG + chr1_3:74769892-74769911 Msa0140520:intron 15.0%
!!! TCTCTTAAGTTTAAAATTAT+GGG + chr1_3:74769893-74769912 Msa0140520:intron 15.0%
!!! TTATAATCATGTTTAGTTTT+AGG + chr1_3:74769917-74769936 Msa0140520:intron 15.0%
!! ACAATTACCTTATAAAATTA+TGG + chr1_3:74769962-74769981 Msa0140520:intron 15.0%
!!! AAATGAATAACAATTTTGTA+GGG - chr1_3:74770004-74770023 None:intergenic 15.0%
!!! AAAATGAATAACAATTTTGT+AGG - chr1_3:74770005-74770024 None:intergenic 15.0%
!! TTAAAATATTTCTTATCGTT+GGG + chr1_3:74770321-74770340 Msa0140520:intron 15.0%
!!! TTTTTTCAAGAAAAATATCA+AGG + chr1_3:74772472-74772491 Msa0140520:intron 15.0%
!! TAATCAATGATATTTCACTA+AGG - chr1_3:74768566-74768585 None:intergenic 20.0%
!!! TGAAATACATTTTTACTAAC+AGG - chr1_3:74769059-74769078 None:intergenic 20.0%
!! TATATTATAGTTACAGAATC+AGG - chr1_3:74769166-74769185 None:intergenic 20.0%
!! AAAGAACATTAAAAATCGAT+GGG + chr1_3:74769750-74769769 Msa0140520:CDS 20.0%
!!! ACACAATTTTTTGTTTTATC+TGG + chr1_3:74769841-74769860 Msa0140520:intron 20.0%
!!! AAAAGGTCCATAATTTTATA+AGG - chr1_3:74769972-74769991 None:intergenic 20.0%
!! CTTAAAATATTTCTTATCGT+TGG + chr1_3:74770320-74770339 Msa0140520:intron 20.0%
!!! AAAGTCACTTTCAATTATAA+TGG + chr1_3:74770444-74770463 Msa0140520:intron 20.0%
!!! CTTCGTATATTTTTATGTTT+TGG + chr1_3:74770746-74770765 Msa0140520:intron 20.0%
!!! AGTTGATTTTTCTTTTGTAA+TGG + chr1_3:74771872-74771891 Msa0140520:exon 20.0%
!! GGAGAAAAAGATTATATAAA+AGG + chr1_3:74772167-74772186 Msa0140520:intron 20.0%
!!! TGTGTTTTTAAAAATGAAAG+CGG + chr1_3:74772230-74772249 Msa0140520:intron 20.0%
!!! CATTTTTTCTACAATCTATA+TGG + chr1_3:74772868-74772887 Msa0140520:intron 20.0%
! AAGAAGATTGAAATACCTAA+TGG + chr1_3:74768154-74768173 Msa0140520:CDS 25.0%
! ATAAAAAAAAAACCTCAGCA+AGG - chr1_3:74768360-74768379 None:intergenic 25.0%
! GTGATTTCAAAACATGAATT+GGG - chr1_3:74768532-74768551 None:intergenic 25.0%
! TACTCAAATGATGTTCAAAT+TGG + chr1_3:74768677-74768696 Msa0140520:intron 25.0%
! TAAATATGCTCAAATGATGT+TGG + chr1_3:74769200-74769219 Msa0140520:intron 25.0%
!!! ATACGTGTTGTTTATTAACT+AGG + chr1_3:74769261-74769280 Msa0140520:intron 25.0%
!!! TGTTTTGTTTATTCTCGTTT+GGG + chr1_3:74769418-74769437 Msa0140520:intron 25.0%
! GAAAGAACATTAAAAATCGA+TGG + chr1_3:74769749-74769768 Msa0140520:CDS 25.0%
!!! TTTATCTGGCTTATCATTTT+TGG + chr1_3:74769855-74769874 Msa0140520:intron 25.0%
! TCAACAAGTCAAAATTCAAA+AGG - chr1_3:74770152-74770171 None:intergenic 25.0%
!!! ATTTCATAGTTTGTTTAAGC+TGG + chr1_3:74770495-74770514 Msa0140520:intron 25.0%
!! CTAATTTTTATTGGCATCAA+TGG + chr1_3:74770674-74770693 Msa0140520:intron 25.0%
! AATAGATGTACACATATAAC+GGG - chr1_3:74770725-74770744 None:intergenic 25.0%
! CAATAGATGTACACATATAA+CGG - chr1_3:74770726-74770745 None:intergenic 25.0%
!!! ATTTTTATGTTTTGGTACGT+TGG + chr1_3:74770754-74770773 Msa0140520:intron 25.0%
!!! TTTTTATGTTTTGGTACGTT+GGG + chr1_3:74770755-74770774 Msa0140520:intron 25.0%
! TAAGAACTATTTCCATATGA+CGG - chr1_3:74771758-74771777 None:intergenic 25.0%
! TCATATGGAAATAGTTCTTA+TGG + chr1_3:74771758-74771777 Msa0140520:CDS 25.0%
! CAAAAGAAAAATCAACTCTT+GGG - chr1_3:74771869-74771888 None:intergenic 25.0%
! ACAAAAGAAAAATCAACTCT+TGG - chr1_3:74771870-74771889 None:intergenic 25.0%
! ATAGATGTTGCTATCAAAAT+GGG - chr1_3:74771938-74771957 None:intergenic 25.0%
!!! TTATTTTCTACTGCTGTTTT+CGG + chr1_3:74771989-74772008 Msa0140520:three_prime_UTR 25.0%
!!! TCTGATTGTGTTTTTTCATT+TGG + chr1_3:74772296-74772315 Msa0140520:intron 25.0%
! TGCAACAAATCAAAAAAAGT+TGG + chr1_3:74772397-74772416 Msa0140520:intron 25.0%
! TTCATCTGATAAAACTTCAT+TGG - chr1_3:74772423-74772442 None:intergenic 25.0%
!!! AATGAAGTTTTATCAGATGA+AGG + chr1_3:74772422-74772441 Msa0140520:intron 25.0%
! TAATGATGTCTATTGTTCTT+AGG + chr1_3:74772636-74772655 Msa0140520:intron 25.0%
! TTGTAGAAAAAATGACCTAA+AGG - chr1_3:74772862-74772881 None:intergenic 25.0%
!!! TTCTTTTGAAATGAGAGATA+CGG - chr1_3:74772951-74772970 None:intergenic 25.0%
AGATTGAAATACCTAATGGT+AGG + chr1_3:74768158-74768177 Msa0140520:CDS 30.0%
GATTGAAATACCTAATGGTA+GGG + chr1_3:74768159-74768178 Msa0140520:CDS 30.0%
TACTGTAATTCTTACTAGTC+AGG + chr1_3:74768426-74768445 Msa0140520:intron 30.0%
ACTGTAATTCTTACTAGTCA+GGG + chr1_3:74768427-74768446 Msa0140520:intron 30.0%
GGTGATTTCAAAACATGAAT+TGG - chr1_3:74768533-74768552 None:intergenic 30.0%
TTTCACTAAGGTAACAGTTA+CGG - chr1_3:74768554-74768573 None:intergenic 30.0%
! CTGATTTGATAACTGTTGTA+TGG + chr1_3:74768599-74768618 Msa0140520:intron 30.0%
CTCAAATGATGTTTCAATGA+CGG + chr1_3:74768775-74768794 Msa0140520:intron 30.0%
TCTAATCTTGCACAATTTCA+TGG + chr1_3:74768893-74768912 Msa0140520:intron 30.0%
TTGGTGAAACATTCACTAAT+AGG + chr1_3:74768948-74768967 Msa0140520:intron 30.0%
GATGCAAATACCAAACAATA+AGG + chr1_3:74769351-74769370 Msa0140520:CDS 30.0%
AAATACCAAACAATAAGGTG+TGG + chr1_3:74769356-74769375 Msa0140520:intron 30.0%
AATACCAAACAATAAGGTGT+GGG + chr1_3:74769357-74769376 Msa0140520:intron 30.0%
!!! GTGTTTTGTTTATTCTCGTT+TGG + chr1_3:74769417-74769436 Msa0140520:intron 30.0%
GGTAAAAAGTTAAAACGGAT+AGG - chr1_3:74769670-74769689 None:intergenic 30.0%
CCTGAAAAAATTGACGATAT+TGG - chr1_3:74769691-74769710 None:intergenic 30.0%
!!! CCAATATCGTCAATTTTTTC+AGG + chr1_3:74769688-74769707 Msa0140520:intron 30.0%
!! TTGCTGATTCAATTTGATCA+GGG - chr1_3:74769778-74769797 None:intergenic 30.0%
!! TTTGCTGATTCAATTTGATC+AGG - chr1_3:74769779-74769798 None:intergenic 30.0%
AATTGAATCAGCAAAGCAAT+TGG + chr1_3:74769784-74769803 Msa0140520:CDS 30.0%
! CTCCACCTTTTGTAAAAATA+AGG + chr1_3:74770030-74770049 Msa0140520:intron 30.0%
!!! CACCTTATTTTTACAAAAGG+TGG - chr1_3:74770035-74770054 None:intergenic 30.0%
!!! GAGCACCTTATTTTTACAAA+AGG - chr1_3:74770038-74770057 None:intergenic 30.0%
TGAGTTATCATGGTTTCATT+TGG - chr1_3:74770089-74770108 None:intergenic 30.0%
!!! CAAAGTGCTGTCTAATTTTA+TGG - chr1_3:74770188-74770207 None:intergenic 30.0%
TCATATGCTCAACTTTCATT+CGG + chr1_3:74770344-74770363 Msa0140520:intron 30.0%
!!! ATTCGGTTTAGTTTTATCCT+TGG + chr1_3:74770361-74770380 Msa0140520:intron 30.0%
!!! TTCGGTTTAGTTTTATCCTT+GGG + chr1_3:74770362-74770381 Msa0140520:intron 30.0%
ATTGAAAGTGACTTTAACGT+AGG - chr1_3:74770439-74770458 None:intergenic 30.0%
AGGATTGTTTCAATGTACTT+GGG + chr1_3:74770548-74770567 Msa0140520:intron 30.0%
TAATGGTTATTATCGTCCTT+TGG + chr1_3:74771889-74771908 Msa0140520:three_prime_UTR 30.0%
AATGGTTATTATCGTCCTTT+GGG + chr1_3:74771890-74771909 Msa0140520:three_prime_UTR 30.0%
AAATTAAAACCACATCCCAA+AGG - chr1_3:74771908-74771927 None:intergenic 30.0%
CATAGATGTTGCTATCAAAA+TGG - chr1_3:74771939-74771958 None:intergenic 30.0%
! TTTGATAGCAACATCTATGT+TGG + chr1_3:74771940-74771959 Msa0140520:three_prime_UTR 30.0%
! CTCAACTTTAGTTCATGATT+GGG - chr1_3:74772366-74772385 None:intergenic 30.0%
! ACTCAACTTTAGTTCATGAT+TGG - chr1_3:74772367-74772386 None:intergenic 30.0%
!!! CTTTTTTTGATTTGTTGCAG+CGG - chr1_3:74772396-74772415 None:intergenic 30.0%
AAGAAAAATATCAAGGAGTG+TGG + chr1_3:74772479-74772498 Msa0140520:intron 30.0%
! AGAAAAATATCAAGGAGTGT+GGG + chr1_3:74772480-74772499 Msa0140520:intron 30.0%
ACAATAGACATCATTACCTA+GGG - chr1_3:74772632-74772651 None:intergenic 30.0%
AACAATAGACATCATTACCT+AGG - chr1_3:74772633-74772652 None:intergenic 30.0%
! ACAACAATGTTTTGTGAACA+AGG - chr1_3:74772796-74772815 None:intergenic 30.0%
! TGTTGTCTTCTCTAATTTTC+TGG + chr1_3:74772810-74772829 Msa0140520:intron 30.0%
AAATGACCTAAAGGTGAAAA+TGG - chr1_3:74772853-74772872 None:intergenic 30.0%
ACCGTGGAATAAATGTTAAA+AGG + chr1_3:74773027-74773046 Msa0140520:three_prime_UTR 30.0%
! GCCTTTTAACATTTATTCCA+CGG - chr1_3:74773031-74773050 None:intergenic 30.0%
AGAGGAAGAAAGTGAAAACA+CGG - chr1_3:74767856-74767875 None:intergenic 35.0%
! TTCATCGTACTTGCGTTTTA+GGG - chr1_3:74767921-74767940 None:intergenic 35.0%
! GTTGGTGTTCTTATTGGTAA+AGG + chr1_3:74768181-74768200 Msa0140520:CDS 35.0%
AAGTATCTTCAGATGCAATC+TGG + chr1_3:74768217-74768236 Msa0140520:CDS 35.0%
! GATTCAAGTTACTCGTGATA+TGG + chr1_3:74768246-74768265 Msa0140520:CDS 35.0%
ACTAGGATGGTTGAACTTAT+GGG + chr1_3:74768289-74768308 Msa0140520:CDS 35.0%
CTGTTGTATGGAGTTTCAAT+AGG + chr1_3:74768611-74768630 Msa0140520:intron 35.0%
CAGTCAGATACAACAAAATC+AGG - chr1_3:74768714-74768733 None:intergenic 35.0%
TGATGTTTCAATGACGGTAA+AGG + chr1_3:74768781-74768800 Msa0140520:intron 35.0%
ATGACTGTAACTTTACCTCT+TGG + chr1_3:74768929-74768948 Msa0140520:intron 35.0%
TTAGTGAATGTTTCACCAAG+AGG - chr1_3:74768947-74768966 None:intergenic 35.0%
TGCTCAAATGATGTTGGAAT+TGG + chr1_3:74769206-74769225 Msa0140520:intron 35.0%
TTTATTAACTAGGCTGAAGC+TGG + chr1_3:74769271-74769290 Msa0140520:intron 35.0%
TTATTAACTAGGCTGAAGCT+GGG + chr1_3:74769272-74769291 Msa0140520:intron 35.0%
ATACCAAACAATAAGGTGTG+GGG + chr1_3:74769358-74769377 Msa0140520:intron 35.0%
GGTTTCTTGTGTGAATCTTT+AGG + chr1_3:74769448-74769467 Msa0140520:intron 35.0%
TCTTGTGTGAATCTTTAGGT+TGG + chr1_3:74769452-74769471 Msa0140520:intron 35.0%
!! CTTTAGGTTGGCCTTATAAT+CGG + chr1_3:74769464-74769483 Msa0140520:intron 35.0%
TTTCTGTTGATGTATCACCT+GGG - chr1_3:74769733-74769752 None:intergenic 35.0%
!! TGCTGATTCAATTTGATCAG+GGG - chr1_3:74769777-74769796 None:intergenic 35.0%
TTGGTTAATCAAATCCTCAC+TGG + chr1_3:74769803-74769822 Msa0140520:CDS 35.0%
!!! TCTGGCTTATCATTTTTGGT+TGG + chr1_3:74769859-74769878 Msa0140520:intron 35.0%
TTGTAGGGACTAAAGTCAAA+AGG - chr1_3:74769989-74770008 None:intergenic 35.0%
!! AGGTGCTCATATTTTTACAG+TGG + chr1_3:74770050-74770069 Msa0140520:intron 35.0%
CAAACAAAATCTAACAGCCA+GGG - chr1_3:74770242-74770261 None:intergenic 35.0%
TCAAACAAAATCTAACAGCC+AGG - chr1_3:74770243-74770262 None:intergenic 35.0%
AATCGACAGAAACACACAAA+TGG - chr1_3:74770283-74770302 None:intergenic 35.0%
GAGGATTGTTTCAATGTACT+TGG + chr1_3:74770547-74770566 Msa0140520:intron 35.0%
GGATTGTTTCAATGTACTTG+GGG + chr1_3:74770549-74770568 Msa0140520:intron 35.0%
TGAAGTACGGTCTGTATATT+TGG + chr1_3:74770577-74770596 Msa0140520:intron 35.0%
TTTCCCATACTTGCTCTTTA+GGG + chr1_3:74770606-74770625 Msa0140520:intron 35.0%
TATTGGCATCAATGGAAATG+AGG + chr1_3:74770682-74770701 Msa0140520:intron 35.0%
AGAATCGTCTCAGAAATTCA+GGG + chr1_3:74770814-74770833 Msa0140520:intron 35.0%
TATAATGCGCAACAACAATC+TGG + chr1_3:74771236-74771255 Msa0140520:CDS 35.0%
ATAATGCGCAACAACAATCT+GGG + chr1_3:74771237-74771256 Msa0140520:CDS 35.0%
TGTTGCTGATCATATGTTTG+TGG - chr1_3:74771272-74771291 None:intergenic 35.0%
CAAACATATGATCAGCAACA+AGG + chr1_3:74771272-74771291 Msa0140520:CDS 35.0%
TATGATCAGCAACAAGGTTA+TGG + chr1_3:74771278-74771297 Msa0140520:CDS 35.0%
! GTTCAGTTTTACAAGCAAGA+AGG + chr1_3:74772137-74772156 Msa0140520:intron 35.0%
AAACACAGAGTCATAAACAG+AGG - chr1_3:74772217-74772236 None:intergenic 35.0%
TTGCTTCTTTGAATTCCAAC+CGG - chr1_3:74772333-74772352 None:intergenic 35.0%
GGAATTCAAAGAAGCAAGAA+CGG + chr1_3:74772336-74772355 Msa0140520:intron 35.0%
AGATGAAGGTTGAATAGATG+AGG + chr1_3:74772436-74772455 Msa0140520:intron 35.0%
TAGTAAGTAAAACAGTCCCT+AGG + chr1_3:74772613-74772632 Msa0140520:intron 35.0%
! CTTAACAGTACTGAGAGATA+CGG + chr1_3:74772917-74772936 Msa0140520:intron 35.0%
AGAAAGTGAAAACACGGTGT+GGG - chr1_3:74767850-74767869 None:intergenic 40.0%
AAGAAAGTGAAAACACGGTG+TGG - chr1_3:74767851-74767870 None:intergenic 40.0%
TTCACTTTCTTCCTCTCCAT+AGG + chr1_3:74767860-74767879 Msa0140520:five_prime_UTR 40.0%
TCACTTTCTTCCTCTCCATA+GGG + chr1_3:74767861-74767880 Msa0140520:five_prime_UTR 40.0%
TTGAAACAAACCCTATGGAG+AGG - chr1_3:74767874-74767893 None:intergenic 40.0%
! CTCCATAGGGTTTGTTTCAA+TGG + chr1_3:74767874-74767893 Msa0140520:exon 40.0%
! CATAGGGTTTGTTTCAATGG+CGG + chr1_3:74767877-74767896 Msa0140520:exon 40.0%
! GTTCATCGTACTTGCGTTTT+AGG - chr1_3:74767922-74767941 None:intergenic 40.0%
AACTTCTTGAGCTCGTTGTT+TGG - chr1_3:74767984-74768003 None:intergenic 40.0%
! TTATCGGACTTGGTTCGTTT+GGG - chr1_3:74768055-74768074 None:intergenic 40.0%
AAACGAACCAAGTCCGATAA+CGG + chr1_3:74768055-74768074 Msa0140520:CDS 40.0%
TAAGAATCAAACCCCGATTG+TGG - chr1_3:74768085-74768104 None:intergenic 40.0%
GAAATACCTAATGGTAGGGT+TGG + chr1_3:74768163-74768182 Msa0140520:CDS 40.0%
GGTGTTCTTATTGGTAAAGG+AGG + chr1_3:74768184-74768203 Msa0140520:CDS 40.0%
CTGATCCTAATTCTCAGACT+AGG + chr1_3:74768272-74768291 Msa0140520:CDS 40.0%
TCCTAATTCTCAGACTAGGA+TGG + chr1_3:74768276-74768295 Msa0140520:CDS 40.0%
ACCATCCTAGTCTGAGAATT+AGG - chr1_3:74768280-74768299 None:intergenic 40.0%
GACTAGGATGGTTGAACTTA+TGG + chr1_3:74768288-74768307 Msa0140520:CDS 40.0%
TATTAACTAGGCTGAAGCTG+GGG + chr1_3:74769273-74769292 Msa0140520:intron 40.0%
GAGAAAATATATCCAGCTGC+AGG + chr1_3:74769380-74769399 Msa0140520:intron 40.0%
! TATTCTCGTTTGGGTTCATG+TGG + chr1_3:74769427-74769446 Msa0140520:intron 40.0%
!! GTTGGCCTTATAATCGGTAA+AGG + chr1_3:74769470-74769489 Msa0140520:CDS 40.0%
! CTCCTCCTTTACCGATTATA+AGG - chr1_3:74769478-74769497 None:intergenic 40.0%
! AAGAGTATGCAAGCTTCTAC+CGG + chr1_3:74769506-74769525 Msa0140520:CDS 40.0%
AAATCCAAGTCATGAGAGTC+GGG - chr1_3:74769647-74769666 None:intergenic 40.0%
GAAATCCAAGTCATGAGAGT+CGG - chr1_3:74769648-74769667 None:intergenic 40.0%
TTCTGTTGATGTATCACCTG+GGG - chr1_3:74769732-74769751 None:intergenic 40.0%
CTTTCTGTTGATGTATCACC+TGG - chr1_3:74769734-74769753 None:intergenic 40.0%
TAATCAAATCCTCACTGGTG+AGG + chr1_3:74769808-74769827 Msa0140520:CDS 40.0%
GAAACCATGATAACTCAGAC+TGG + chr1_3:74770092-74770111 Msa0140520:intron 40.0%
ATGTCTCTATTTATGTGCCC+TGG + chr1_3:74770222-74770241 Msa0140520:intron 40.0%
! TTTAAGCTGGCCTGTTAGAT+TGG + chr1_3:74770508-74770527 Msa0140520:intron 40.0%
! TTAAGCTGGCCTGTTAGATT+GGG + chr1_3:74770509-74770528 Msa0140520:intron 40.0%
GTTTCCCATACTTGCTCTTT+AGG + chr1_3:74770605-74770624 Msa0140520:intron 40.0%
ACTCCCTAAAGAGCAAGTAT+GGG - chr1_3:74770612-74770631 None:intergenic 40.0%
TACTCCCTAAAGAGCAAGTA+TGG - chr1_3:74770613-74770632 None:intergenic 40.0%
!!! GGGCGAGCATTTTTAATTTG+TGG + chr1_3:74770775-74770794 Msa0140520:intron 40.0%
CAGAATCGTCTCAGAAATTC+AGG + chr1_3:74770813-74770832 Msa0140520:intron 40.0%
AACAAGCTGGTTATGGCTAT+GGG + chr1_3:74770913-74770932 Msa0140520:CDS 40.0%
ATCTGCTTGTGATCCATAGT+TGG - chr1_3:74771357-74771376 None:intergenic 40.0%
TTGAGGAGTTTCTTGTTGGT+TGG - chr1_3:74771429-74771448 None:intergenic 40.0%
AAACTCCTCAACCAGGTTAT+GGG + chr1_3:74771438-74771457 Msa0140520:CDS 40.0%
!! TTTGCACTTGGCTTTTGAGA+GGG - chr1_3:74771536-74771555 None:intergenic 40.0%
!! ATTTGCACTTGGCTTTTGAG+AGG - chr1_3:74771537-74771556 None:intergenic 40.0%
GAACTATTTCCATATGACGG+TGG - chr1_3:74771755-74771774 None:intergenic 40.0%
! TTATGGTGCTAGTTATGCTC+AGG + chr1_3:74771775-74771794 Msa0140520:CDS 40.0%
!! TATTATCGTCCTTTGGGATG+TGG + chr1_3:74771896-74771915 Msa0140520:three_prime_UTR 40.0%
GATGTTGCTATCAAAATGGG+AGG - chr1_3:74771935-74771954 None:intergenic 40.0%
TAGCAAGTAAAACAGTCCCT+AGG + chr1_3:74772070-74772089 Msa0140520:intron 40.0%
AGTAAAACAGTCCCTAGGTA+AGG + chr1_3:74772075-74772094 Msa0140520:intron 40.0%
! CAGTTTTACAAGCAAGAAGG+AGG + chr1_3:74772140-74772159 Msa0140520:intron 40.0%
TCATTTGGTTGTGTTGTGTC+CGG + chr1_3:74772311-74772330 Msa0140520:intron 40.0%
GAATAGATGAGGTCAATGCT+TGG + chr1_3:74772447-74772466 Msa0140520:intron 40.0%
CAGTCTTACAAGCAAGCTTA+TGG + chr1_3:74772706-74772725 Msa0140520:intron 40.0%
TTACAAGCAAGCTTATGGCT+TGG + chr1_3:74772711-74772730 Msa0140520:intron 40.0%
! TCTCCACCATTTTCACCTTT+AGG + chr1_3:74772844-74772863 Msa0140520:intron 40.0%
TGACCTAAAGGTGAAAATGG+TGG - chr1_3:74772850-74772869 None:intergenic 40.0%
! TCCATGCCATTTGCAGAATT+TGG + chr1_3:74773000-74773019 Msa0140520:three_prime_UTR 40.0%
CGCCATTGAAACAAACCCTA+TGG - chr1_3:74767879-74767898 None:intergenic 45.0%
! GTTATCGGACTTGGTTCGTT+TGG - chr1_3:74768056-74768075 None:intergenic 45.0%
AGAACACCAACCCTACCATT+AGG - chr1_3:74768172-74768191 None:intergenic 45.0%
!! GGTAGGGTTGGTGTTCTTAT+TGG + chr1_3:74768175-74768194 Msa0140520:CDS 45.0%
CATCAATGAAGTCCTTGCTG+AGG + chr1_3:74768345-74768364 Msa0140520:CDS 45.0%
TCTCCCCACACCTTATTGTT+TGG - chr1_3:74769364-74769383 None:intergenic 45.0%
! GGCCTTATAATCGGTAAAGG+AGG + chr1_3:74769473-74769492 Msa0140520:CDS 45.0%
AGAGTATGCAAGCTTCTACC+GGG + chr1_3:74769507-74769526 Msa0140520:CDS 45.0%
TCTGTTGATGTATCACCTGG+GGG - chr1_3:74769731-74769750 None:intergenic 45.0%
GATAACATACCTCACCAGTG+AGG - chr1_3:74769820-74769839 None:intergenic 45.0%
GTCTCCAGTCTGAGTTATCA+TGG - chr1_3:74770099-74770118 None:intergenic 45.0%
! GACAGCACTTTGAAGACTCT+TGG + chr1_3:74770196-74770215 Msa0140520:intron 45.0%
TTCCCTCAACCCAATCTAAC+AGG - chr1_3:74770521-74770540 None:intergenic 45.0%
!! TGTTAGATTGGGTTGAGGGA+AGG + chr1_3:74770520-74770539 Msa0140520:intron 45.0%
ACTTGGGGCTTAGTGAAGTA+CGG + chr1_3:74770564-74770583 Msa0140520:intron 45.0%
CTCAGAAATTCAGGGAACTC+AGG + chr1_3:74770822-74770841 Msa0140520:CDS 45.0%
AGAAATTCAGGGAACTCAGG+TGG + chr1_3:74770825-74770844 Msa0140520:CDS 45.0%
TCAGGTGGTTATACTCAGCA+AGG + chr1_3:74770840-74770859 Msa0140520:CDS 45.0%
CAACAAGCTGGTTATGGCTA+TGG + chr1_3:74770912-74770931 Msa0140520:CDS 45.0%
AACCTCCTTCCTCTGGTTAT+AGG + chr1_3:74771174-74771193 Msa0140520:CDS 45.0%
GGTTATGGTCAGGAAAGCTA+TGG + chr1_3:74771209-74771228 Msa0140520:CDS 45.0%
!! AGTAGTGGGTTGGGAAGTTT+GGG - chr1_3:74771384-74771403 None:intergenic 45.0%
CTGGTTGAGGAGTTTCTTGT+TGG - chr1_3:74771433-74771452 None:intergenic 45.0%
CAACAAGAAACTCCTCAACC+AGG + chr1_3:74771431-74771450 Msa0140520:CDS 45.0%
GAAACTCCTCAACCAGGTTA+TGG + chr1_3:74771437-74771456 Msa0140520:CDS 45.0%
AACTCCTCAACCAGGTTATG+GGG + chr1_3:74771439-74771458 Msa0140520:CDS 45.0%
! AGACTGTGGTTGACTTCCAT+AGG - chr1_3:74771486-74771505 None:intergenic 45.0%
TATGGAAGTCAACCACAGTC+TGG + chr1_3:74771485-74771504 Msa0140520:CDS 45.0%
AGTCAACCACAGTCTGGTTA+TGG + chr1_3:74771491-74771510 Msa0140520:CDS 45.0%
TCTGGTTATGGACCTGGTTA+TGG + chr1_3:74771503-74771522 Msa0140520:CDS 45.0%
! TAAGCAGGTGGATTTGCACT+TGG - chr1_3:74771548-74771567 None:intergenic 45.0%
AGTGCAAATCCACCTGCTTA+TGG + chr1_3:74771548-74771567 Msa0140520:CDS 45.0%
TGTGATTGACCATAAGCAGG+TGG - chr1_3:74771560-74771579 None:intergenic 45.0%
GACTGTGATTGACCATAAGC+AGG - chr1_3:74771563-74771582 None:intergenic 45.0%
!! TGAGGAGCACCATATGATTG+CGG - chr1_3:74771704-74771723 None:intergenic 45.0%
CAATCATATGGTGCTCCTCA+AGG + chr1_3:74771704-74771723 Msa0140520:CDS 45.0%
GCACTAGTCATCCTTACCTA+GGG - chr1_3:74772089-74772108 None:intergenic 45.0%
AGCACTAGTCATCCTTACCT+AGG - chr1_3:74772090-74772109 None:intergenic 45.0%
TACAAGCAAGAAGGAGGAGA+AGG + chr1_3:74772146-74772165 Msa0140520:intron 45.0%
CGCTTTCTGCATAATCTAGG+AGG - chr1_3:74772259-74772278 None:intergenic 45.0%
! CGTCGCTTTCTGCATAATCT+AGG - chr1_3:74772262-74772281 None:intergenic 45.0%
GGAACTTCGCAGTTCATTTC+AGG - chr1_3:74772983-74773002 None:intergenic 45.0%
GCCAAATTCTGCAAATGGCA+TGG - chr1_3:74773004-74773023 None:intergenic 45.0%
GTTGCGCCAAATTCTGCAAA+TGG - chr1_3:74773009-74773028 None:intergenic 45.0%
GTGTGGGAAGGAGTTGGATT+AGG - chr1_3:74767834-74767853 None:intergenic 50.0%
AGTGAAAACACGGTGTGGGA+AGG - chr1_3:74767846-74767865 None:intergenic 50.0%
! CTTGGTTCGTTTGGGATCGT+AGG - chr1_3:74768047-74768066 None:intergenic 50.0%
!! CGATTGTGGAGCACCGTTAT+CGG - chr1_3:74768071-74768090 None:intergenic 50.0%
! CGATAACGGTGCTCCACAAT+CGG + chr1_3:74768069-74768088 Msa0140520:CDS 50.0%
! GATAACGGTGCTCCACAATC+GGG + chr1_3:74768070-74768089 Msa0140520:CDS 50.0%
ATAACGGTGCTCCACAATCG+GGG + chr1_3:74768071-74768090 Msa0140520:CDS 50.0%
TCGCAGCAAGGTGGTAGTTA+TGG + chr1_3:74768124-74768143 Msa0140520:CDS 50.0%
TCAGCAGAAGAAACAGCGTC+AGG - chr1_3:74768319-74768338 None:intergenic 50.0%
AGACGGATGGTTGCACAATC+TGG + chr1_3:74769313-74769332 Msa0140520:CDS 50.0%
GACGGATGGTTGCACAATCT+GGG + chr1_3:74769314-74769333 Msa0140520:CDS 50.0%
ACGGATGGTTGCACAATCTG+GGG + chr1_3:74769315-74769334 Msa0140520:CDS 50.0%
GAGTATGCAAGCTTCTACCG+GGG + chr1_3:74769508-74769527 Msa0140520:CDS 50.0%
GAAAACCTGAATTCGTGCCC+CGG - chr1_3:74769528-74769547 None:intergenic 50.0%
ACTGGAGACTGCAGTAGCTA+TGG + chr1_3:74770110-74770129 Msa0140520:intron 50.0%
GTAGATGAGCACAAGTCCCA+AGG - chr1_3:74770381-74770400 None:intergenic 50.0%
! TGGCCTGTTAGATTGGGTTG+AGG + chr1_3:74770515-74770534 Msa0140520:intron 50.0%
!! GGCCTGTTAGATTGGGTTGA+GGG + chr1_3:74770516-74770535 Msa0140520:intron 50.0%
!! CCATAACCAGCTTGTTGTGC+AGG - chr1_3:74770909-74770928 None:intergenic 50.0%
CCTGCACAACAAGCTGGTTA+TGG + chr1_3:74770906-74770925 Msa0140520:CDS 50.0%
GATGGACCAGAGTATGATCC+AGG - chr1_3:74770942-74770961 None:intergenic 50.0%
GGCATGTTATACTGCGGTGA+TGG - chr1_3:74770960-74770979 None:intergenic 50.0%
GGCTGAGGCATGTTATACTG+CGG - chr1_3:74770966-74770985 None:intergenic 50.0%
TGAGGAGGATAGCCTGCATA+TGG - chr1_3:74770990-74771009 None:intergenic 50.0%
TGAGTAGACTGCTGGTGAGA+TGG - chr1_3:74771056-74771075 None:intergenic 50.0%
CACTTGCATGAGTAGACTGC+TGG - chr1_3:74771064-74771083 None:intergenic 50.0%
CAGCAGTCTACTCATGCAAG+TGG + chr1_3:74771062-74771081 Msa0140520:CDS 50.0%
!! TTTGCTGTTGCTGGGGTTGT+TGG - chr1_3:74771103-74771122 None:intergenic 50.0%
!!! CCAGGATTTTGCTGTTGCTG+GGG - chr1_3:74771110-74771129 None:intergenic 50.0%
!!! CCCAGGATTTTGCTGTTGCT+GGG - chr1_3:74771111-74771130 None:intergenic 50.0%
CCCAGCAACAGCAAAATCCT+GGG + chr1_3:74771108-74771127 Msa0140520:CDS 50.0%
CCAGCAACAGCAAAATCCTG+GGG + chr1_3:74771109-74771128 Msa0140520:CDS 50.0%
CAGCAACAGCAAAATCCTGG+GGG + chr1_3:74771110-74771129 Msa0140520:CDS 50.0%
TACAGTCAACCTCCTTCCTC+TGG + chr1_3:74771167-74771186 Msa0140520:CDS 50.0%
TGCCTATAACCAGAGGAAGG+AGG - chr1_3:74771179-74771198 None:intergenic 50.0%
GGTTGCCTATAACCAGAGGA+AGG - chr1_3:74771182-74771201 None:intergenic 50.0%
TCCTCTGGTTATAGGCAACC+TGG + chr1_3:74771182-74771201 Msa0140520:CDS 50.0%
TCCAGGTTGCCTATAACCAG+AGG - chr1_3:74771186-74771205 None:intergenic 50.0%
TGGTTATAGGCAACCTGGAC+AGG + chr1_3:74771187-74771206 Msa0140520:CDS 50.0%
GGTTATAGGCAACCTGGACA+GGG + chr1_3:74771188-74771207 Msa0140520:CDS 50.0%
GCGCAACAACAATCTGGGTA+TGG + chr1_3:74771242-74771261 Msa0140520:CDS 50.0%
! TATGGCTCTGCTCCCAGTTA+TGG + chr1_3:74771296-74771315 Msa0140520:CDS 50.0%
TGGGAGTAATCCAACCCAAG+AGG + chr1_3:74771322-74771341 Msa0140520:CDS 50.0%
GGGAGTAATCCAACCCAAGA+GGG + chr1_3:74771323-74771342 Msa0140520:CDS 50.0%
GGAGTAATCCAACCCAAGAG+GGG + chr1_3:74771324-74771343 Msa0140520:CDS 50.0%
!! CAGTAGTGGGTTGGGAAGTT+TGG - chr1_3:74771385-74771404 None:intergenic 50.0%
!! GTTGGTAGCATAGCCTTGCT+GGG - chr1_3:74771411-74771430 None:intergenic 50.0%
TTGACTTCCATAGGCCGCTT+GGG - chr1_3:74771477-74771496 None:intergenic 50.0%
TCTGGCTGAGCATATCCAGA+AGG - chr1_3:74771641-74771660 None:intergenic 50.0%
GGATATGCTCAGCCAGAGTT+AGG + chr1_3:74771644-74771663 Msa0140520:CDS 50.0%
GCTCTATGAGTGCCTAACTC+TGG - chr1_3:74771659-74771678 None:intergenic 50.0%
! ATAGAGCACCAGTGCAACCA+GGG + chr1_3:74771672-74771691 Msa0140520:CDS 50.0%
TATGATTGCGGACCATACCC+TGG - chr1_3:74771692-74771711 None:intergenic 50.0%
GGGTATGGTCCGCAATCATA+TGG + chr1_3:74771692-74771711 Msa0140520:CDS 50.0%
TCATATGGTGCTCCTCAAGG+TGG + chr1_3:74771707-74771726 Msa0140520:CDS 50.0%
TTCCATATGACGGTGGAGTC+TGG - chr1_3:74771748-74771767 None:intergenic 50.0%
ACTTTAGCAACACTGCCCTG+TGG - chr1_3:74771842-74771861 None:intergenic 50.0%
TTGGTTGTGTTGTGTCCGGT+TGG + chr1_3:74772315-74772334 Msa0140520:intron 50.0%
AACACGGTGTGGGAAGGAGT+TGG - chr1_3:74767840-74767859 None:intergenic 55.0%
! TTCGAGTTCGATGTCCGTGG+CGG - chr1_3:74767951-74767970 None:intergenic 55.0%
! GACTTCGAGTTCGATGTCCG+TGG - chr1_3:74767954-74767973 None:intergenic 55.0%
TTGGGATCGTAGGAGAGTGG+TGG - chr1_3:74768037-74768056 None:intergenic 55.0%
! CGTTTGGGATCGTAGGAGAG+TGG - chr1_3:74768040-74768059 None:intergenic 55.0%
!! TGGAGCACCGTTATCGGACT+TGG - chr1_3:74768065-74768084 None:intergenic 55.0%
AAGCCGCAATACTCGCAGCA+AGG + chr1_3:74768112-74768131 Msa0140520:CDS 55.0%
! CCACCTTGCTGCGAGTATTG+CGG - chr1_3:74768118-74768137 None:intergenic 55.0%
CGGATGGTTGCACAATCTGG+GGG + chr1_3:74769316-74769335 Msa0140520:CDS 55.0%
! CCAAAAAGCATGCCTGCAGC+TGG - chr1_3:74769395-74769414 None:intergenic 55.0%
! CCAGCTGCAGGCATGCTTTT+TGG + chr1_3:74769392-74769411 Msa0140520:intron 55.0%
TTCTACCGGGGCACGAATTC+AGG + chr1_3:74769520-74769539 Msa0140520:CDS 55.0%
ACTGCCCGACTCTCATGACT+TGG + chr1_3:74769640-74769659 Msa0140520:intron 55.0%
ATACCTTTGCATCCTCCCCC+AGG + chr1_3:74769713-74769732 Msa0140520:CDS 55.0%
GTTGATGTATCACCTGGGGG+AGG - chr1_3:74769728-74769747 None:intergenic 55.0%
! TGGGTTGAGGGAAGGTTGAG+AGG + chr1_3:74770528-74770547 Msa0140520:intron 55.0%
GGTTATGGCTATGGGCAACC+TGG + chr1_3:74770921-74770940 Msa0140520:CDS 55.0%
GGGCAACCTGGATCATACTC+TGG + chr1_3:74770933-74770952 Msa0140520:CDS 55.0%
ATGCCTCAGCCACCATATGC+AGG + chr1_3:74770975-74770994 Msa0140520:CDS 55.0%
TAGCCTGCATATGGTGGCTG+AGG - chr1_3:74770981-74771000 None:intergenic 55.0%
GGAGGATAGCCTGCATATGG+TGG - chr1_3:74770987-74771006 None:intergenic 55.0%
GAATATCCACCGGGTTGCTG+AGG - chr1_3:74771008-74771027 None:intergenic 55.0%
CAGTTGGCGGAATATCCACC+GGG - chr1_3:74771017-74771036 None:intergenic 55.0%
CCAGTTGGCGGAATATCCAC+CGG - chr1_3:74771018-74771037 None:intergenic 55.0%
CGGTGGATATTCCGCCAACT+GGG + chr1_3:74771016-74771035 Msa0140520:CDS 55.0%
! AGTCGATTGGTCCCAGTTGG+CGG - chr1_3:74771030-74771049 None:intergenic 55.0%
! AGCAGTCGATTGGTCCCAGT+TGG - chr1_3:74771033-74771052 None:intergenic 55.0%
GGTGAGATGGAGCAGTCGAT+TGG - chr1_3:74771043-74771062 None:intergenic 55.0%
CCCCAGCAACAGCAAAATCC+TGG + chr1_3:74771107-74771126 Msa0140520:CDS 55.0%
!!! CCCCAGGATTTTGCTGTTGC+TGG - chr1_3:74771112-74771131 None:intergenic 55.0%
GTCCTCCACAACCAGCTGAT+GGG + chr1_3:74771132-74771151 Msa0140520:CDS 55.0%
CTGTATGCAGACCCATCAGC+TGG - chr1_3:74771146-74771165 None:intergenic 55.0%
AGGCAACCTGGACAGGGTTA+TGG + chr1_3:74771194-74771213 Msa0140520:CDS 55.0%
ACCTGGACAGGGTTATGGTC+AGG + chr1_3:74771199-74771218 Msa0140520:CDS 55.0%
TCCTGACCATAACCCTGTCC+AGG - chr1_3:74771203-74771222 None:intergenic 55.0%
! GTTGGAAGTGTGCCCCTCTT+GGG - chr1_3:74771339-74771358 None:intergenic 55.0%
! AGTTGGAAGTGTGCCCCTCT+TGG - chr1_3:74771340-74771359 None:intergenic 55.0%
! GAGGGGCACACTTCCAACTA+TGG + chr1_3:74771341-74771360 Msa0140520:CDS 55.0%
!! AGTGGGTTGGGAAGTTTGGG+AGG - chr1_3:74771381-74771400 None:intergenic 55.0%
!! CTGGGCAACAGTAGTGGGTT+GGG - chr1_3:74771393-74771412 None:intergenic 55.0%
CCTTGCTGGGCAACAGTAGT+GGG - chr1_3:74771398-74771417 None:intergenic 55.0%
!! GGTTGGTAGCATAGCCTTGC+TGG - chr1_3:74771412-74771431 None:intergenic 55.0%
GCTACCCCATAACCTGGTTG+AGG - chr1_3:74771446-74771465 None:intergenic 55.0%
! GTTGACTTCCATAGGCCGCT+TGG - chr1_3:74771478-74771497 None:intergenic 55.0%
CCAGGTCCATAACCAGACTG+TGG - chr1_3:74771500-74771519 None:intergenic 55.0%
CCACAGTCTGGTTATGGACC+TGG + chr1_3:74771497-74771516 Msa0140520:CDS 55.0%
!! GCACTTGGCTTTTGAGAGGG+AGG - chr1_3:74771533-74771552 None:intergenic 55.0%
ACTGACCATAGCCTCCTGCT+GGG - chr1_3:74771592-74771611 None:intergenic 55.0%
GTCAGCATATCCCTCTAGCC+AGG + chr1_3:74771610-74771629 Msa0140520:CDS 55.0%
CTGAGCATATCCAGAAGGCG+GGG - chr1_3:74771636-74771655 None:intergenic 55.0%
GCTGAGCATATCCAGAAGGC+GGG - chr1_3:74771637-74771656 None:intergenic 55.0%
GGCTGAGCATATCCAGAAGG+CGG - chr1_3:74771638-74771657 None:intergenic 55.0%
! CATAGAGCACCAGTGCAACC+AGG + chr1_3:74771671-74771690 Msa0140520:CDS 55.0%
TAGCGATGGAGCAACTGCAC+AGG + chr1_3:74771811-74771830 Msa0140520:CDS 55.0%
AACTGCACAGGCTGTTCCAC+AGG + chr1_3:74771823-74771842 Msa0140520:CDS 55.0%
ACTGCACAGGCTGTTCCACA+GGG + chr1_3:74771824-74771843 Msa0140520:CDS 55.0%
TGCAGAATTTGGCGCAACCG+TGG + chr1_3:74773011-74773030 Msa0140520:three_prime_UTR 55.0%
CGATGAACAACCCACCGCCA+CGG + chr1_3:74767934-74767953 Msa0140520:CDS 60.0%
AGTTCGATGTCCGTGGCGGT+GGG - chr1_3:74767947-74767966 None:intergenic 60.0%
GGTGACGCTGAGAAGACGAG+CGG - chr1_3:74768008-74768027 None:intergenic 60.0%
GCTCGTCTTCTCAGCGTCAC+CGG + chr1_3:74768007-74768026 Msa0140520:CDS 60.0%
CCGCAATACTCGCAGCAAGG+TGG + chr1_3:74768115-74768134 Msa0140520:CDS 60.0%
TAGGCTGAAGCTGGGGCTTC+TGG + chr1_3:74769280-74769299 Msa0140520:intron 60.0%
CTTCTGGCGGTGGCACTAGA+CGG + chr1_3:74769296-74769315 Msa0140520:CDS 60.0%
TCACCTGGGGGAGGATGCAA+AGG - chr1_3:74769719-74769738 None:intergenic 60.0%
AGCTAGACGGTGGTCGGGAT+TGG - chr1_3:74770869-74770888 None:intergenic 60.0%
AATCCCGACCACCGTCTAGC+TGG + chr1_3:74770868-74770887 Msa0140520:CDS 60.0%
ATCCCGACCACCGTCTAGCT+GGG + chr1_3:74770869-74770888 Msa0140520:CDS 60.0%
TGTTGTGCAGGAGCAGCAGG+AGG - chr1_3:74770897-74770916 None:intergenic 60.0%
!! GCTTGTTGTGCAGGAGCAGC+AGG - chr1_3:74770900-74770919 None:intergenic 60.0%
GCTGCTCCTGCACAACAAGC+TGG + chr1_3:74770900-74770919 Msa0140520:CDS 60.0%
GGCTATCCTCCTCAGCAACC+CGG + chr1_3:74770996-74771015 Msa0140520:CDS 60.0%
TATCCTCCTCAGCAACCCGG+TGG + chr1_3:74770999-74771018 Msa0140520:CDS 60.0%
TATCCACCGGGTTGCTGAGG+AGG - chr1_3:74771005-74771024 None:intergenic 60.0%
CCGGTGGATATTCCGCCAAC+TGG + chr1_3:74771015-74771034 Msa0140520:CDS 60.0%
GGTCCTCCACAACCAGCTGA+TGG + chr1_3:74771131-74771150 Msa0140520:CDS 60.0%
GACCCATCAGCTGGTTGTGG+AGG - chr1_3:74771137-74771156 None:intergenic 60.0%
GCAGACCCATCAGCTGGTTG+TGG - chr1_3:74771140-74771159 None:intergenic 60.0%
GAAGTGTGCCCCTCTTGGGT+TGG - chr1_3:74771335-74771354 None:intergenic 60.0%
!! GCTGGGCAACAGTAGTGGGT+TGG - chr1_3:74771394-74771413 None:intergenic 60.0%
CCCACTACTGTTGCCCAGCA+AGG + chr1_3:74771395-74771414 Msa0140520:CDS 60.0%
GCCTTGCTGGGCAACAGTAG+TGG - chr1_3:74771399-74771418 None:intergenic 60.0%
GTAGGGGCTACCCCATAACC+TGG - chr1_3:74771452-74771471 None:intergenic 60.0%
ATAGGCCGCTTGGGAGGTAG+GGG - chr1_3:74771468-74771487 None:intergenic 60.0%
CATAGGCCGCTTGGGAGGTA+GGG - chr1_3:74771469-74771488 None:intergenic 60.0%
ACTTCCATAGGCCGCTTGGG+AGG - chr1_3:74771474-74771493 None:intergenic 60.0%
!! GAGGGAGGAGCACCATAACC+AGG - chr1_3:74771518-74771537 None:intergenic 60.0%
TCACAGTCACCTAGCCCAGC+AGG + chr1_3:74771575-74771594 Msa0140520:CDS 60.0%
GACTGACCATAGCCTCCTGC+TGG - chr1_3:74771593-74771612 None:intergenic 60.0%
GCACCAGTGCAACCAGGGTA+TGG + chr1_3:74771677-74771696 Msa0140520:CDS 60.0%
GGACCATACCCTGGTTGCAC+TGG - chr1_3:74771683-74771702 None:intergenic 60.0%
! TAGCTAGGCTGGCCACCTTG+AGG - chr1_3:74771722-74771741 None:intergenic 60.0%
CAAGGTGGCCAGCCTAGCTA+TGG + chr1_3:74771722-74771741 Msa0140520:CDS 60.0%
GAGTCTGGCCATAGCTAGGC+TGG - chr1_3:74771733-74771752 None:intergenic 60.0%
GGTGGAGTCTGGCCATAGCT+AGG - chr1_3:74771737-74771756 None:intergenic 60.0%
GGCCAGACTCCACCGTCATA+TGG + chr1_3:74771743-74771762 Msa0140520:CDS 60.0%
GCTCCAGCGTATGCTAGCGA+TGG + chr1_3:74771797-74771816 Msa0140520:CDS 60.0%
GCTCCATCGCTAGCATACGC+TGG - chr1_3:74771803-74771822 None:intergenic 60.0%
GAGTTCGATGTCCGTGGCGG+TGG - chr1_3:74767948-74767967 None:intergenic 65.0%
! GTAGGAGAGTGGTGGAGCGC+CGG - chr1_3:74768029-74768048 None:intergenic 65.0%
GCTGAAGCTGGGGCTTCTGG+CGG + chr1_3:74769283-74769302 Msa0140520:CDS 65.0%
TGGCGGTGGCACTAGACGGA+TGG + chr1_3:74769300-74769319 Msa0140520:CDS 65.0%
AGCCCAGCTAGACGGTGGTC+GGG - chr1_3:74770874-74770893 None:intergenic 65.0%
GAGCCCAGCTAGACGGTGGT+CGG - chr1_3:74770875-74770894 None:intergenic 65.0%
GCAGGAGGAGCCCAGCTAGA+CGG - chr1_3:74770882-74770901 None:intergenic 65.0%
GGTAGCCCCTACCTCCCAAG+CGG + chr1_3:74771460-74771479 Msa0140520:CDS 65.0%
CCATAGGCCGCTTGGGAGGT+AGG - chr1_3:74771470-74771489 None:intergenic 65.0%
CCTACCTCCCAAGCGGCCTA+TGG + chr1_3:74771467-74771486 Msa0140520:CDS 65.0%
CAGTCACCTAGCCCAGCAGG+AGG + chr1_3:74771578-74771597 Msa0140520:CDS 65.0%
CCATAGCCTCCTGCTGGGCT+AGG - chr1_3:74771587-74771606 None:intergenic 65.0%
CCTAGCCCAGCAGGAGGCTA+TGG + chr1_3:74771584-74771603 Msa0140520:CDS 65.0%
CATATCCAGAAGGCGGGGCC+TGG - chr1_3:74771631-74771650 None:intergenic 65.0%
GAAGCTGGGGCTTCTGGCGG+TGG + chr1_3:74769286-74769305 Msa0140520:CDS 70.0%
GGAGGAGCCCAGCTAGACGG+TGG - chr1_3:74770879-74770898 None:intergenic 70.0%
GCTGGTTGTGGAGGACCCCC+AGG - chr1_3:74771128-74771147 None:intergenic 70.0%
GAAGGCGGGGCCTGGCTAGA+GGG - chr1_3:74771623-74771642 None:intergenic 70.0%
AGAAGGCGGGGCCTGGCTAG+AGG - chr1_3:74771624-74771643 None:intergenic 70.0%
TCTAGCCAGGCCCCGCCTTC+TGG + chr1_3:74771623-74771642 Msa0140520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74767822 74773105 74767822 ID=Msa0140520;Name=Msa0140520
chr1_3 mRNA 74767822 74773105 74767822 ID=Msa0140520-mRNA-1;Parent=Msa0140520;Name=Msa0140520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=71|1|1|1|0.8|0.66|6|379|605
chr1_3 exon 74767822 74768366 74767822 ID=Msa0140520-mRNA-1:exon:26077;Parent=Msa0140520-mRNA-1
chr1_3 exon 74769283 74769372 74769283 ID=Msa0140520-mRNA-1:exon:26078;Parent=Msa0140520-mRNA-1
chr1_3 exon 74769470 74769541 74769470 ID=Msa0140520-mRNA-1:exon:26079;Parent=Msa0140520-mRNA-1
chr1_3 exon 74769710 74769829 74769710 ID=Msa0140520-mRNA-1:exon:26080;Parent=Msa0140520-mRNA-1
chr1_3 exon 74770816 74772075 74770816 ID=Msa0140520-mRNA-1:exon:26081;Parent=Msa0140520-mRNA-1
chr1_3 exon 74772925 74773105 74772925 ID=Msa0140520-mRNA-1:exon:26082;Parent=Msa0140520-mRNA-1
chr1_3 five_prime_UTR 74767822 74767892 74767822 ID=Msa0140520-mRNA-1:five_prime_utr;Parent=Msa0140520-mRNA-1
chr1_3 CDS 74767893 74768366 74767893 ID=Msa0140520-mRNA-1:cds;Parent=Msa0140520-mRNA-1
chr1_3 CDS 74769283 74769372 74769283 ID=Msa0140520-mRNA-1:cds;Parent=Msa0140520-mRNA-1
chr1_3 CDS 74769470 74769541 74769470 ID=Msa0140520-mRNA-1:cds;Parent=Msa0140520-mRNA-1
chr1_3 CDS 74769710 74769829 74769710 ID=Msa0140520-mRNA-1:cds;Parent=Msa0140520-mRNA-1
chr1_3 CDS 74770816 74771877 74770816 ID=Msa0140520-mRNA-1:cds;Parent=Msa0140520-mRNA-1
chr1_3 three_prime_UTR 74771878 74772075 74771878 ID=Msa0140520-mRNA-1:three_prime_utr;Parent=Msa0140520-mRNA-1
chr1_3 three_prime_UTR 74772925 74773105 74772925 ID=Msa0140520-mRNA-1:three_prime_utr;Parent=Msa0140520-mRNA-1
Gene Sequence

>Msa0140520

ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGCAAGTACGATGAACAACCCACCGCCACGGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTTGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATACTCGCAGCAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGACGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATCGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGGGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCAGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGCACAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCGCCAACTGGGACCAATCGACTGCTCCATCTCACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTCCACAACCAGCTGATGGGTCTGCATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGGCAACCTGGACAGGGTTATGGTCAGGAAAGCTATGGTGCGTATAATGCGCAACAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAGGGGCACACTTCCAACTATGGATCACAAGCAGATACCTCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGAAACTCCTCAACCAGGTTATGGGGTAGCCCCTACCTCCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTGGTTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGCTTATGGTCAATCACAGTCACCTAGCCCAGCAGGAGGCTATGGTCAGTCAGCATATCCCTCTAGCCAGGCCCCGCCTTCTGGATATGCTCAGCCAGAGTTAGGCACTCATAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATATGGTGCTCCTCAAGGTGGCCAGCCTAGCTATGGCCAGACTCCACCGTCATATGGAAATAGTTCTTATGGTGCTAGTTATGCTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCAGTGTTGCTAAAGTGTCACCCAAGAGTTGA
Protein sequence

>Msa0140520

MAEEAQYATLKRKYDEQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPAQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSANWDQSTAPSHQQSTHASGYDYYNQQPQQQQNPGGPPQPADGSAYSYSQPPSSGYRQPGQGYGQESYGAYNAQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQTSQPTTVAQQGYATNQQETPQPGYGVAPTSQAAYGSQPQSGYGPGYGAPPSQKPSANPPAYGQSQSPSPAGGYGQSAYPSSQAPPSGYAQPELGTHRAPVQPGYGPQSYGAPQGGQPSYGQTPPSYGNSSYGASYAQAPAYASDGATAQAVPQGSVAKVSPKS*