Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844260 | ANS57911.1 | 74.576 | 118 | 21 | 2 | 14 | 131 | 34 | 142 | 2.67e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844260 | sp|B5LMN0|ATPF_CICAR | 79.000 | 100 | 15 | 1 | 32 | 131 | 41 | 134 | 4.99e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844260 | A0A0F6NLL1 | 74.576 | 118 | 21 | 2 | 14 | 131 | 34 | 142 | 1.27e-48 | 164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202640 | Msa0844260 | 0.816083 | 6.640647e-52 | -8.615850e-47 |
| Msa0405430 | Msa0844260 | 0.813960 | 1.964225e-51 | -8.615850e-47 |
| Msa0405440 | Msa0844260 | 0.802362 | 5.817247e-49 | -8.615850e-47 |
| Msa0405510 | Msa0844260 | 0.806054 | 9.908090e-50 | -8.615850e-47 |
| Msa0405520 | Msa0844260 | 0.806651 | 7.415757e-50 | -8.615850e-47 |
| Msa0263770 | Msa0844260 | 0.815262 | 1.011839e-51 | -8.615850e-47 |
| Msa0268170 | Msa0844260 | 0.814799 | 1.281707e-51 | -8.615850e-47 |
| Msa0268190 | Msa0844260 | 0.808120 | 3.619539e-50 | -8.615850e-47 |
| Msa0268250 | Msa0844260 | 0.803114 | 4.068173e-49 | -8.615850e-47 |
| Msa0268300 | Msa0844260 | 0.807426 | 5.084121e-50 | -8.615850e-47 |
| Msa0268390 | Msa0844260 | 0.803227 | 3.855259e-49 | -8.615850e-47 |
| Msa0268400 | Msa0844260 | 0.807688 | 4.472312e-50 | -8.615850e-47 |
| Msa0268410 | Msa0844260 | 0.818468 | 1.930001e-52 | -8.615850e-47 |
| Msa0268430 | Msa0844260 | 0.804616 | 1.983600e-49 | -8.615850e-47 |
| Msa0268530 | Msa0844260 | 0.802331 | 5.902989e-49 | -8.615850e-47 |
| Msa0268550 | Msa0844260 | 0.810749 | 9.873100e-51 | -8.615850e-47 |
| Msa0268630 | Msa0844260 | 0.808601 | 2.858149e-50 | -8.615850e-47 |
| Msa0268740 | Msa0844260 | 0.804766 | 1.845161e-49 | -8.615850e-47 |
| Msa0268830 | Msa0844260 | 0.809481 | 1.852175e-50 | -8.615850e-47 |
| Msa0268840 | Msa0844260 | 0.804356 | 2.246874e-49 | -8.615850e-47 |
| Msa0268950 | Msa0844260 | 0.801290 | 9.657045e-49 | -8.615850e-47 |
| Msa0268960 | Msa0844260 | 0.804768 | 1.843233e-49 | -8.615850e-47 |
| Msa0269040 | Msa0844260 | 0.807424 | 5.088500e-50 | -8.615850e-47 |
| Msa0269050 | Msa0844260 | 0.817785 | 2.753927e-52 | -8.615850e-47 |
| Msa0269070 | Msa0844260 | 0.802452 | 5.573604e-49 | -8.615850e-47 |
| Msa0269130 | Msa0844260 | 0.808448 | 3.081341e-50 | -8.615850e-47 |
| Msa0344190 | Msa0844260 | 0.802115 | 6.539651e-49 | -8.615850e-47 |
| Msa0582520 | Msa0844260 | 0.815279 | 1.002748e-51 | -8.615850e-47 |
| Msa0582630 | Msa0844260 | 0.818160 | 2.265473e-52 | -8.615850e-47 |
| Msa0582690 | Msa0844260 | 0.806327 | 8.682455e-50 | -8.615850e-47 |
| Msa0582700 | Msa0844260 | 0.820950 | 5.232484e-53 | -8.615850e-47 |
| Msa0582720 | Msa0844260 | 0.803192 | 3.919654e-49 | -8.615850e-47 |
| Msa0582750 | Msa0844260 | 0.811112 | 8.240809e-51 | -8.615850e-47 |
| Msa0582760 | Msa0844260 | 0.811568 | 6.559596e-51 | -8.615850e-47 |
| Msa0582810 | Msa0844260 | 0.806612 | 7.557937e-50 | -8.615850e-47 |
| Msa0582820 | Msa0844260 | 0.810667 | 1.028642e-50 | -8.615850e-47 |
| Msa0582910 | Msa0844260 | 0.807191 | 5.701580e-50 | -8.615850e-47 |
| Msa0582920 | Msa0844260 | 0.810393 | 1.178486e-50 | -8.615850e-47 |
| Msa0591350 | Msa0844260 | 0.824425 | 8.128799e-54 | -8.615850e-47 |
| Msa0591380 | Msa0844260 | 0.864353 | 1.292214e-64 | -8.615850e-47 |
| Msa0844260 | Msa0867690 | 0.810495 | 1.120217e-50 | -8.615850e-47 |
| Msa0844260 | Msa0908310 | 0.807421 | 5.096232e-50 | -8.615850e-47 |
| Msa0844260 | Msa0908320 | 0.804471 | 2.126450e-49 | -8.615850e-47 |
| Msa0844260 | Msa0908370 | 0.807571 | 4.736200e-50 | -8.615850e-47 |
| Msa0844260 | Msa0908380 | 0.800880 | 1.170791e-48 | -8.615850e-47 |
| Msa0844260 | Msa0908430 | 0.810127 | 1.344907e-50 | -8.615850e-47 |
| Msa0844260 | Msa0908590 | 0.803627 | 3.185773e-49 | -8.615850e-47 |
| Msa0844260 | Msa0908650 | 0.801892 | 7.266051e-49 | -8.615850e-47 |
| Msa0844260 | Msa0924830 | 0.813399 | 2.609969e-51 | -8.615850e-47 |
| Msa0844260 | Msa0924850 | 0.813232 | 2.840677e-51 | -8.615850e-47 |
| Msa0844260 | Msa0924990 | 0.811112 | 8.237715e-51 | -8.615850e-47 |
| Msa0844260 | Msa0925110 | 0.816684 | 4.870424e-52 | -8.615850e-47 |
| Msa0844260 | Msa0931130 | 0.802336 | 5.886830e-49 | -8.615850e-47 |
| Msa0844260 | Msa0931260 | 0.805419 | 1.346997e-49 | -8.615850e-47 |
| Msa0844260 | Msa1086070 | 0.818474 | 1.923946e-52 | -8.615850e-47 |
| Msa0844260 | Msa1086180 | 0.822162 | 2.745238e-53 | -8.615850e-47 |
| Msa0844260 | Msa1086270 | 0.805444 | 1.331104e-49 | -8.615850e-47 |
| Msa0844260 | Msa1086280 | 0.818951 | 1.499039e-52 | -8.615850e-47 |
| Msa0844260 | Msa1086300 | 0.801026 | 1.093544e-48 | -8.615850e-47 |
| Msa0844260 | Msa1086380 | 0.812689 | 3.736434e-51 | -8.615850e-47 |
| Msa0844260 | Msa1086430 | 0.800486 | 1.409076e-48 | -8.615850e-47 |
| Msa0844260 | Msa1086450 | 0.812491 | 4.127125e-51 | -8.615850e-47 |
| Msa0844260 | Msa1086470 | 0.803662 | 3.131706e-49 | -8.615850e-47 |
| Msa0844260 | Msa1086600 | 0.818608 | 1.793540e-52 | -8.615850e-47 |
| Msa0844260 | Msa1086660 | 0.803593 | 3.237352e-49 | -8.615850e-47 |
| Msa0844260 | Msa1086790 | 0.800147 | 1.651680e-48 | -8.615850e-47 |
| Msa0844260 | Msa1086880 | 0.814927 | 1.200586e-51 | -8.615850e-47 |
| Msa0844260 | Msa1086900 | 0.810363 | 1.196322e-50 | -8.615850e-47 |
| Msa0844260 | Msa1086970 | 0.802428 | 5.636044e-49 | -8.615850e-47 |
| Msa0844260 | Msa1143120 | 0.802295 | 6.003108e-49 | -8.615850e-47 |
| Msa0844260 | Msa1143170 | 0.801361 | 9.337135e-49 | -8.615850e-47 |
| Msa0844260 | Msa1354550 | 0.800034 | 1.741785e-48 | -8.615850e-47 |
| Msa0844260 | Msa1354610 | 0.802272 | 6.070092e-49 | -8.615850e-47 |
| Msa0844260 | Msa1354750 | 0.809087 | 2.249883e-50 | -8.615850e-47 |
| Msa0844260 | Msa1354900 | 0.804119 | 2.517539e-49 | -8.615850e-47 |
| Msa0844260 | Msa1354910 | 0.802044 | 6.761187e-49 | -8.615850e-47 |
| Msa0844260 | Msa1354990 | 0.802131 | 6.489525e-49 | -8.615850e-47 |
| Msa0844260 | Msa1355070 | 0.808358 | 3.221955e-50 | -8.615850e-47 |
| Msa0844260 | Msa1355080 | 0.804960 | 1.681178e-49 | -8.615850e-47 |
| Msa0844260 | Msa1355090 | 0.802289 | 6.022253e-49 | -8.615850e-47 |
| Msa0844260 | Msa1366090 | 0.802093 | 6.605241e-49 | -8.615850e-47 |
| Msa0844260 | Msa1380570 | 0.806455 | 8.156807e-50 | -8.615850e-47 |
| Msa0844260 | Msa1380600 | 0.806819 | 6.834074e-50 | -8.615850e-47 |
| Msa0844260 | Msa1394030 | 0.816545 | 5.234431e-52 | -8.615850e-47 |
| Msa0844260 | Msa1394040 | 0.813465 | 2.524788e-51 | -8.615850e-47 |
| Msa0844260 | Msa1394150 | 0.811346 | 7.329019e-51 | -8.615850e-47 |
| Msa0844260 | Msa1394220 | 0.832378 | 9.782020e-56 | -8.615850e-47 |
| Msa0844260 | Msa1394230 | 0.820024 | 8.535601e-53 | -8.615850e-47 |
| Msa0844260 | Msa1394250 | 0.817407 | 3.351119e-52 | -8.615850e-47 |
| Msa0844260 | Msa1460120 | 0.809905 | 1.501982e-50 | -8.615850e-47 |
| Msa0844260 | Msa1460130 | 0.810422 | 1.161593e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844260 | MtrunA17_CPg0492961 | 98.765 | 81 | 1 | 0 | 51 | 131 | 52 | 132 | 7.49e-51 | 159 |
| Msa0844260 | MtrunA17_Chr4g0016641 | 96.154 | 52 | 2 | 0 | 1 | 52 | 751 | 802 | 7.84e-28 | 107 |
| Msa0844260 | MtrunA17_CPg0493041 | 96.154 | 52 | 2 | 0 | 1 | 52 | 751 | 802 | 7.84e-28 | 107 |
| Msa0844260 | MtrunA17_Chr1g0159041 | 97.222 | 36 | 1 | 0 | 1 | 36 | 209 | 244 | 1.95e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844260 | ATCG00130.1 | 72.000 | 100 | 22 | 1 | 32 | 131 | 41 | 134 | 2.04e-41 | 136 |
| Msa0844260 | ATCG00190.1 | 90.385 | 52 | 5 | 0 | 1 | 52 | 748 | 799 | 3.13e-26 | 102 |
Find 32 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 5_4:-22608643 | Msa0844260:CDS |
| CTACTTTCCTTAAGCGGGCC+CGG | 0.340021 | 5_4:+22607896 | None:intergenic |
| TAATTCAATTTATACAACTT+TGG | 0.388293 | 5_4:-22607806 | Msa0844260:CDS |
| AGATTATTACGAGCTATACT+TGG | 0.409704 | 5_4:-22608651 | Msa0844260:CDS |
| AGAAAGCCCGGGCCCGCTTA+AGG | 0.414131 | 5_4:-22607903 | Msa0844260:CDS |
| ACTTGTCTAAAACTACCTAT+AGG | 0.437083 | 5_4:-22608603 | Msa0844260:CDS |
| CGTTTCTACTTTCCTTAAGC+GGG | 0.444690 | 5_4:+22607891 | None:intergenic |
| GCGGATCGGTTTCGAGTGAA+TGG | 0.446998 | 5_4:-22607865 | Msa0844260:CDS |
| TTCAAAATTCAGAAGAACTA+CGG | 0.449969 | 5_4:-22607948 | Msa0844260:CDS |
| GGAAGCAGCCGTTGAACAGC+TGG | 0.450450 | 5_4:-22607926 | Msa0844260:CDS |
| ACTCGGCCCCTACCACCTAT+AGG | 0.455800 | 5_4:+22608588 | None:intergenic |
| TACTTTCCTTAAGCGGGCCC+GGG | 0.461743 | 5_4:+22607897 | None:intergenic |
| GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 5_4:+22608660 | None:intergenic |
| TTGAACAGCTGGAGAAAGCC+CGG | 0.472109 | 5_4:-22607915 | Msa0844260:CDS |
| GGCTTTCTCCAGCTGTTCAA+CGG | 0.504402 | 5_4:+22607918 | None:intergenic |
| TCAAAATTCAGAAGAACTAC+GGG | 0.510719 | 5_4:-22607947 | Msa0844260:CDS |
| CCGTTTCTACTTTCCTTAAG+CGG | 0.521089 | 5_4:+22607890 | None:intergenic |
| AAAACTACCTATAGGTGGTA+GGG | 0.530153 | 5_4:-22608595 | Msa0844260:CDS |
| TAAAACTACCTATAGGTGGT+AGG | 0.538804 | 5_4:-22608596 | Msa0844260:CDS |
| TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 5_4:+22608668 | None:intergenic |
| TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 5_4:+22608671 | None:intergenic |
| GATTATTACGAGCTATACTT+GGG | 0.558504 | 5_4:-22608650 | Msa0844260:CDS |
| GCCGAGTTATTGATGTGAGA+TGG | 0.559021 | 5_4:-22608572 | Msa0844260:CDS |
| AAGTAGAAACGGAAGCGGAT+CGG | 0.570689 | 5_4:-22607879 | Msa0844260:CDS |
| GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 5_4:-22608679 | Msa0844260:CDS |
| CCGCTTAAGGAAAGTAGAAA+CGG | 0.573518 | 5_4:-22607890 | Msa0844260:CDS |
| TGAACAGCTGGAGAAAGCCC+GGG | 0.575165 | 5_4:-22607914 | Msa0844260:CDS |
| TCCATCTCACATCAATAACT+CGG | 0.602104 | 5_4:+22608571 | None:intergenic |
| AAACTACCTATAGGTGGTAG+GGG | 0.618823 | 5_4:-22608594 | Msa0844260:CDS |
| AAGGAAAGTAGAAACGGAAG+CGG | 0.622485 | 5_4:-22607884 | Msa0844260:CDS |
| GATTCAGGTATCGACCTCAA+AGG | 0.672007 | 5_4:-22608628 | Msa0844260:CDS |
| TGTCTAAAACTACCTATAGG+TGG | 0.673297 | 5_4:-22608600 | Msa0844260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAATCAGAATTCTT+TGG | - | chr5_4:22608159-22608178 | Msa0844260:intron | 15.0% |
| !! | CAATACAAGATTAAAATATT+TGG | + | chr5_4:22608241-22608260 | None:intergenic | 15.0% |
| !!! | CAAATATTTTAATCTTGTAT+TGG | - | chr5_4:22608239-22608258 | Msa0844260:intron | 15.0% |
| !! | TAATTCAATTTATACAACTT+TGG | - | chr5_4:22608628-22608647 | Msa0844260:CDS | 15.0% |
| !! | ATAAATTAATCAGAATTCTT+TGG | - | chr5_4:22608159-22608178 | Msa0844260:intron | 15.0% |
| !! | CAATACAAGATTAAAATATT+TGG | + | chr5_4:22608241-22608260 | None:intergenic | 15.0% |
| !!! | CAAATATTTTAATCTTGTAT+TGG | - | chr5_4:22608239-22608258 | Msa0844260:intron | 15.0% |
| !! | TAATTCAATTTATACAACTT+TGG | - | chr5_4:22608628-22608647 | Msa0844260:CDS | 15.0% |
| !! | ATATATATATGAATCGTTTC+TGG | + | chr5_4:22607918-22607937 | None:intergenic | 20.0% |
| !! | ATTCTGATTAATTTATACGT+AGG | + | chr5_4:22608155-22608174 | None:intergenic | 20.0% |
| !! | TACAAGATTAAAATATTTGG+AGG | + | chr5_4:22608238-22608257 | None:intergenic | 20.0% |
| !! | ATATATATATGAATCGTTTC+TGG | + | chr5_4:22607918-22607937 | None:intergenic | 20.0% |
| !! | ATTCTGATTAATTTATACGT+AGG | + | chr5_4:22608155-22608174 | None:intergenic | 20.0% |
| !! | TACAAGATTAAAATATTTGG+AGG | + | chr5_4:22608238-22608257 | None:intergenic | 20.0% |
| ! | TGAAATTAAAGTTTCCTTTG+AGG | - | chr5_4:22607950-22607969 | Msa0844260:CDS | 25.0% |
| ! | GAAATTAAAGTTTCCTTTGA+GGG | - | chr5_4:22607951-22607970 | Msa0844260:CDS | 25.0% |
| !!! | ATAAAGCAAATCTTGGTTTT+CGG | - | chr5_4:22608028-22608047 | Msa0844260:intron | 25.0% |
| ! | TTCTCTTTACGATGAAAAAT+AGG | - | chr5_4:22608077-22608096 | Msa0844260:intron | 25.0% |
| ! | TTTGCTGACAATTATTTGTT+TGG | - | chr5_4:22608202-22608221 | Msa0844260:intron | 25.0% |
| ! | TGTTTAGAAATAGAGAAAAG+AGG | - | chr5_4:22608277-22608296 | Msa0844260:intron | 25.0% |
| ! | CTCATTCGATAATAAAGATT+GGG | - | chr5_4:22608305-22608324 | Msa0844260:intron | 25.0% |
| ! | CATGAATCTTTCAATTCATT+TGG | + | chr5_4:22608361-22608380 | None:intergenic | 25.0% |
| ! | TGAATTGAAAGATTCATGTT+TGG | - | chr5_4:22608363-22608382 | Msa0844260:intron | 25.0% |
| ! | TTCAAAATTCAGAAGAACTA+CGG | - | chr5_4:22608486-22608505 | Msa0844260:intron | 25.0% |
| ! | TGAAATTAAAGTTTCCTTTG+AGG | - | chr5_4:22607950-22607969 | Msa0844260:CDS | 25.0% |
| ! | GAAATTAAAGTTTCCTTTGA+GGG | - | chr5_4:22607951-22607970 | Msa0844260:CDS | 25.0% |
| !!! | ATAAAGCAAATCTTGGTTTT+CGG | - | chr5_4:22608028-22608047 | Msa0844260:intron | 25.0% |
| ! | TTCTCTTTACGATGAAAAAT+AGG | - | chr5_4:22608077-22608096 | Msa0844260:intron | 25.0% |
| ! | TTTGCTGACAATTATTTGTT+TGG | - | chr5_4:22608202-22608221 | Msa0844260:intron | 25.0% |
| ! | TGTTTAGAAATAGAGAAAAG+AGG | - | chr5_4:22608277-22608296 | Msa0844260:intron | 25.0% |
| ! | CTCATTCGATAATAAAGATT+GGG | - | chr5_4:22608305-22608324 | Msa0844260:intron | 25.0% |
| ! | CATGAATCTTTCAATTCATT+TGG | + | chr5_4:22608361-22608380 | None:intergenic | 25.0% |
| ! | TGAATTGAAAGATTCATGTT+TGG | - | chr5_4:22608363-22608382 | Msa0844260:intron | 25.0% |
| ! | TTCAAAATTCAGAAGAACTA+CGG | - | chr5_4:22608486-22608505 | Msa0844260:intron | 25.0% |
| AGATTATTACGAGCTATACT+TGG | - | chr5_4:22607783-22607802 | Msa0844260:CDS | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | - | chr5_4:22607784-22607803 | Msa0844260:CDS | 30.0% | |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | + | chr5_4:22607823-22607842 | None:intergenic | 30.0% |
| ! | ACTTGTCTAAAACTACCTAT+AGG | - | chr5_4:22607831-22607850 | Msa0844260:CDS | 30.0% |
| ! | AAACCAAGATTTGCTTTATC+CGG | + | chr5_4:22608027-22608046 | None:intergenic | 30.0% |
| !! | TCAAGTCATTTTATCGACAT+GGG | + | chr5_4:22608056-22608075 | None:intergenic | 30.0% |
| !! | TTCAAGTCATTTTATCGACA+TGG | + | chr5_4:22608057-22608076 | None:intergenic | 30.0% |
| CGATGAAAAATAGGAAAAAC+AGG | - | chr5_4:22608086-22608105 | Msa0844260:intron | 30.0% | |
| TCAATTCCGCATTGTATAAA+AGG | + | chr5_4:22608129-22608148 | None:intergenic | 30.0% | |
| AGAAATAGAGAAAAGAGGAT+AGG | - | chr5_4:22608282-22608301 | Msa0844260:intron | 30.0% | |
| GCTCATTCGATAATAAAGAT+TGG | - | chr5_4:22608304-22608323 | Msa0844260:intron | 30.0% | |
| AGATTGGGAAATTTCCTATA+CGG | - | chr5_4:22608320-22608339 | Msa0844260:intron | 30.0% | |
| TGAAAGATTCATGTTTGGTT+CGG | - | chr5_4:22608368-22608387 | Msa0844260:intron | 30.0% | |
| TCAAAATTCAGAAGAACTAC+GGG | - | chr5_4:22608487-22608506 | Msa0844260:intron | 30.0% | |
| ! | CAATTTTTCTCGTTCTATCT+CGG | + | chr5_4:22608600-22608619 | None:intergenic | 30.0% |
| ! | AACGATTCATTTTGAACAAC+AGG | - | chr5_4:22608676-22608695 | Msa0844260:CDS | 30.0% |
| ! | ACGATTCATTTTGAACAACA+GGG | - | chr5_4:22608677-22608696 | Msa0844260:CDS | 30.0% |
| AGATTATTACGAGCTATACT+TGG | - | chr5_4:22607783-22607802 | Msa0844260:CDS | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | - | chr5_4:22607784-22607803 | Msa0844260:CDS | 30.0% | |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | + | chr5_4:22607823-22607842 | None:intergenic | 30.0% |
| ! | ACTTGTCTAAAACTACCTAT+AGG | - | chr5_4:22607831-22607850 | Msa0844260:CDS | 30.0% |
| ! | AAACCAAGATTTGCTTTATC+CGG | + | chr5_4:22608027-22608046 | None:intergenic | 30.0% |
| !! | TCAAGTCATTTTATCGACAT+GGG | + | chr5_4:22608056-22608075 | None:intergenic | 30.0% |
| !! | TTCAAGTCATTTTATCGACA+TGG | + | chr5_4:22608057-22608076 | None:intergenic | 30.0% |
| CGATGAAAAATAGGAAAAAC+AGG | - | chr5_4:22608086-22608105 | Msa0844260:intron | 30.0% | |
| TCAATTCCGCATTGTATAAA+AGG | + | chr5_4:22608129-22608148 | None:intergenic | 30.0% | |
| AGAAATAGAGAAAAGAGGAT+AGG | - | chr5_4:22608282-22608301 | Msa0844260:intron | 30.0% | |
| GCTCATTCGATAATAAAGAT+TGG | - | chr5_4:22608304-22608323 | Msa0844260:intron | 30.0% | |
| AGATTGGGAAATTTCCTATA+CGG | - | chr5_4:22608320-22608339 | Msa0844260:intron | 30.0% | |
| TGAAAGATTCATGTTTGGTT+CGG | - | chr5_4:22608368-22608387 | Msa0844260:intron | 30.0% | |
| TCAAAATTCAGAAGAACTAC+GGG | - | chr5_4:22608487-22608506 | Msa0844260:intron | 30.0% | |
| ! | CAATTTTTCTCGTTCTATCT+CGG | + | chr5_4:22608600-22608619 | None:intergenic | 30.0% |
| ! | AACGATTCATTTTGAACAAC+AGG | - | chr5_4:22608676-22608695 | Msa0844260:CDS | 30.0% |
| ! | ACGATTCATTTTGAACAACA+GGG | - | chr5_4:22608677-22608696 | Msa0844260:CDS | 30.0% |
| GCTCGTAATAATCTATCTTC+CGG | + | chr5_4:22607777-22607796 | None:intergenic | 35.0% | |
| ! | TGTCTAAAACTACCTATAGG+TGG | - | chr5_4:22607834-22607853 | Msa0844260:CDS | 35.0% |
| TAAAACTACCTATAGGTGGT+AGG | - | chr5_4:22607838-22607857 | Msa0844260:CDS | 35.0% | |
| AAAACTACCTATAGGTGGTA+GGG | - | chr5_4:22607839-22607858 | Msa0844260:CDS | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | + | chr5_4:22607866-22607885 | None:intergenic | 35.0% | |
| AGATGGATCCAAAAAAAAGC+AGG | - | chr5_4:22607879-22607898 | Msa0844260:CDS | 35.0% | |
| !!! | AGCTAGAACCTGCTTTTTTT+TGG | + | chr5_4:22607890-22607909 | None:intergenic | 35.0% |
| !! | AGGGTATTGATACTCCTAAA+AGG | - | chr5_4:22607970-22607989 | Msa0844260:CDS | 35.0% |
| ! | GAGCAAATAGAACTCCTTTT+AGG | + | chr5_4:22607987-22608006 | None:intergenic | 35.0% |
| ATACCGGATAAAGCAAATCT+TGG | - | chr5_4:22608021-22608040 | Msa0844260:intron | 35.0% | |
| ATTCCGCATTGTATAAAAGG+AGG | + | chr5_4:22608126-22608145 | None:intergenic | 35.0% | |
| ! | GAAAGATTCATGTTTGGTTC+GGG | - | chr5_4:22608369-22608388 | Msa0844260:intron | 35.0% |
| GCTCGTAATAATCTATCTTC+CGG | + | chr5_4:22607777-22607796 | None:intergenic | 35.0% | |
| ! | TGTCTAAAACTACCTATAGG+TGG | - | chr5_4:22607834-22607853 | Msa0844260:CDS | 35.0% |
| TAAAACTACCTATAGGTGGT+AGG | - | chr5_4:22607838-22607857 | Msa0844260:CDS | 35.0% | |
| AAAACTACCTATAGGTGGTA+GGG | - | chr5_4:22607839-22607858 | Msa0844260:CDS | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | + | chr5_4:22607866-22607885 | None:intergenic | 35.0% | |
| AGATGGATCCAAAAAAAAGC+AGG | - | chr5_4:22607879-22607898 | Msa0844260:CDS | 35.0% | |
| !!! | AGCTAGAACCTGCTTTTTTT+TGG | + | chr5_4:22607890-22607909 | None:intergenic | 35.0% |
| !! | AGGGTATTGATACTCCTAAA+AGG | - | chr5_4:22607970-22607989 | Msa0844260:CDS | 35.0% |
| ! | GAGCAAATAGAACTCCTTTT+AGG | + | chr5_4:22607987-22608006 | None:intergenic | 35.0% |
| ATACCGGATAAAGCAAATCT+TGG | - | chr5_4:22608021-22608040 | Msa0844260:intron | 35.0% | |
| ATTCCGCATTGTATAAAAGG+AGG | + | chr5_4:22608126-22608145 | None:intergenic | 35.0% | |
| ! | GAAAGATTCATGTTTGGTTC+GGG | - | chr5_4:22608369-22608388 | Msa0844260:intron | 35.0% |
| TAATCTATCTTCCGGAGCAT+AGG | + | chr5_4:22607769-22607788 | None:intergenic | 40.0% | |
| AAACTACCTATAGGTGGTAG+GGG | - | chr5_4:22607840-22607859 | Msa0844260:CDS | 40.0% | |
| !! | AGGAGTATCAATACCCTCAA+AGG | + | chr5_4:22607967-22607986 | None:intergenic | 40.0% |
| ! | ACGCCTCCTTTTATACAATG+CGG | - | chr5_4:22608120-22608139 | Msa0844260:intron | 40.0% |
| TCTCACACTCAATTCCGTAT+AGG | + | chr5_4:22608337-22608356 | None:intergenic | 40.0% | |
| CGTTTCTACTTTCCTTAAGC+GGG | + | chr5_4:22608546-22608565 | None:intergenic | 40.0% | |
| CCGTTTCTACTTTCCTTAAG+CGG | + | chr5_4:22608547-22608566 | None:intergenic | 40.0% | |
| CCGCTTAAGGAAAGTAGAAA+CGG | - | chr5_4:22608544-22608563 | Msa0844260:intron | 40.0% | |
| AAGGAAAGTAGAAACGGAAG+CGG | - | chr5_4:22608550-22608569 | Msa0844260:intron | 40.0% | |
| TAATCTATCTTCCGGAGCAT+AGG | + | chr5_4:22607769-22607788 | None:intergenic | 40.0% | |
| AAACTACCTATAGGTGGTAG+GGG | - | chr5_4:22607840-22607859 | Msa0844260:CDS | 40.0% | |
| !! | AGGAGTATCAATACCCTCAA+AGG | + | chr5_4:22607967-22607986 | None:intergenic | 40.0% |
| ! | ACGCCTCCTTTTATACAATG+CGG | - | chr5_4:22608120-22608139 | Msa0844260:intron | 40.0% |
| TCTCACACTCAATTCCGTAT+AGG | + | chr5_4:22608337-22608356 | None:intergenic | 40.0% | |
| CGTTTCTACTTTCCTTAAGC+GGG | + | chr5_4:22608546-22608565 | None:intergenic | 40.0% | |
| CCGTTTCTACTTTCCTTAAG+CGG | + | chr5_4:22608547-22608566 | None:intergenic | 40.0% | |
| CCGCTTAAGGAAAGTAGAAA+CGG | - | chr5_4:22608544-22608563 | Msa0844260:intron | 40.0% | |
| AAGGAAAGTAGAAACGGAAG+CGG | - | chr5_4:22608550-22608569 | Msa0844260:intron | 40.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | - | chr5_4:22607755-22607774 | Msa0844260:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | - | chr5_4:22607791-22607810 | Msa0844260:CDS | 45.0% | |
| !! | GATTCAGGTATCGACCTCAA+AGG | - | chr5_4:22607806-22607825 | Msa0844260:CDS | 45.0% |
| GCCGAGTTATTGATGTGAGA+TGG | - | chr5_4:22607862-22607881 | Msa0844260:CDS | 45.0% | |
| TCGTAGCTCACGATTGATAC+CGG | - | chr5_4:22608005-22608024 | Msa0844260:intron | 45.0% | |
| AAGTAGAAACGGAAGCGGAT+CGG | - | chr5_4:22608555-22608574 | Msa0844260:intron | 45.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | - | chr5_4:22607755-22607774 | Msa0844260:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | - | chr5_4:22607791-22607810 | Msa0844260:CDS | 45.0% | |
| !! | GATTCAGGTATCGACCTCAA+AGG | - | chr5_4:22607806-22607825 | Msa0844260:CDS | 45.0% |
| GCCGAGTTATTGATGTGAGA+TGG | - | chr5_4:22607862-22607881 | Msa0844260:CDS | 45.0% | |
| TCGTAGCTCACGATTGATAC+CGG | - | chr5_4:22608005-22608024 | Msa0844260:intron | 45.0% | |
| AAGTAGAAACGGAAGCGGAT+CGG | - | chr5_4:22608555-22608574 | Msa0844260:intron | 45.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | + | chr5_4:22607766-22607785 | None:intergenic | 50.0% | |
| GGCTTTCTCCAGCTGTTCAA+CGG | + | chr5_4:22608519-22608538 | None:intergenic | 50.0% | |
| TTGAACAGCTGGAGAAAGCC+CGG | - | chr5_4:22608519-22608538 | Msa0844260:intron | 50.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | + | chr5_4:22607766-22607785 | None:intergenic | 50.0% | |
| GGCTTTCTCCAGCTGTTCAA+CGG | + | chr5_4:22608519-22608538 | None:intergenic | 50.0% | |
| TTGAACAGCTGGAGAAAGCC+CGG | - | chr5_4:22608519-22608538 | Msa0844260:intron | 50.0% | |
| TGAACAGCTGGAGAAAGCCC+GGG | - | chr5_4:22608520-22608539 | Msa0844260:intron | 55.0% | |
| TACTTTCCTTAAGCGGGCCC+GGG | + | chr5_4:22608540-22608559 | None:intergenic | 55.0% | |
| CTACTTTCCTTAAGCGGGCC+CGG | + | chr5_4:22608541-22608560 | None:intergenic | 55.0% | |
| ! | GCGGATCGGTTTCGAGTGAA+TGG | - | chr5_4:22608569-22608588 | Msa0844260:CDS | 55.0% |
| TGAACAGCTGGAGAAAGCCC+GGG | - | chr5_4:22608520-22608539 | Msa0844260:intron | 55.0% | |
| TACTTTCCTTAAGCGGGCCC+GGG | + | chr5_4:22608540-22608559 | None:intergenic | 55.0% | |
| CTACTTTCCTTAAGCGGGCC+CGG | + | chr5_4:22608541-22608560 | None:intergenic | 55.0% | |
| ! | GCGGATCGGTTTCGAGTGAA+TGG | - | chr5_4:22608569-22608588 | Msa0844260:CDS | 55.0% |
| ACTCGGCCCCTACCACCTAT+AGG | + | chr5_4:22607849-22607868 | None:intergenic | 60.0% | |
| GGAAGCAGCCGTTGAACAGC+TGG | - | chr5_4:22608508-22608527 | Msa0844260:intron | 60.0% | |
| ACTCGGCCCCTACCACCTAT+AGG | + | chr5_4:22607849-22607868 | None:intergenic | 60.0% | |
| GGAAGCAGCCGTTGAACAGC+TGG | - | chr5_4:22608508-22608527 | Msa0844260:intron | 60.0% | |
| AGAAAGCCCGGGCCCGCTTA+AGG | - | chr5_4:22608531-22608550 | Msa0844260:intron | 65.0% | |
| AGAAAGCCCGGGCCCGCTTA+AGG | - | chr5_4:22608531-22608550 | Msa0844260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22607750 | 22608706 | 22607750 | ID=Msa0844260;Name=Msa0844260 |
| chr5_4 | mRNA | 22607750 | 22608706 | 22607750 | ID=Msa0844260-mRNA-1;Parent=Msa0844260;Name=Msa0844260-mRNA-1;_AED=0.37;_eAED=0.39;_QI=0|0|0|1|0|0|2|0|133 |
| chr5_4 | exon | 22608556 | 22608706 | 22608556 | ID=Msa0844260-mRNA-1:exon:9275;Parent=Msa0844260-mRNA-1 |
| chr5_4 | exon | 22607750 | 22608000 | 22607750 | ID=Msa0844260-mRNA-1:exon:9274;Parent=Msa0844260-mRNA-1 |
| chr5_4 | CDS | 22608556 | 22608706 | 22608556 | ID=Msa0844260-mRNA-1:cds;Parent=Msa0844260-mRNA-1 |
| chr5_4 | CDS | 22607750 | 22608000 | 22607750 | ID=Msa0844260-mRNA-1:cds;Parent=Msa0844260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
