AlfalfaGEDB | Msa0202640

M. sativa cultivar zhongmu-4 / Msa0202640

KEGG: K02108
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1902600
PFAM: PF00119.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202640	YP_003587564.1	100.000	247	0	0	6	252	1	247	2.00e-176	495

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202640	sp\|P06452\|ATPI_PEA	100.000	247	0	0	6	252	1	247	2.50e-179	495

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202640	A0A0K0LTK3	100.000	247	0	0	6	252	1	247	9.57e-177	495

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0202640	0.806912	6.533766e-50	-8.615850e-47
Msa0002690	Msa0202640	0.819532	1.105702e-52	-8.615850e-47
Msa0002700	Msa0202640	0.823127	1.636842e-53	-8.615850e-47
Msa0011410	Msa0202640	0.802163	6.391017e-49	-8.615850e-47
Msa0011440	Msa0202640	0.808357	3.222499e-50	-8.615850e-47
Msa0011450	Msa0202640	0.807475	4.964719e-50	-8.615850e-47
Msa0021570	Msa0202640	0.819629	1.050408e-52	-8.615850e-47
Msa0065670	Msa0202640	0.805438	1.334632e-49	-8.615850e-47
Msa0069590	Msa0202640	0.811213	7.834221e-51	-8.615850e-47
Msa0094170	Msa0202640	0.801904	7.226324e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202640	MtrunA17_Chr4g0016701	98.785	247	1	1	6	252	1	245	1.84e-175	482
Msa0202640	MtrunA17_CPg0492981	98.785	247	1	1	6	252	1	245	1.84e-175	482
Msa0202640	MtrunA17_Chr4g0015611	98.785	247	1	1	6	252	1	245	1.84e-175	482
Msa0202640	MtrunA17_Chr3g0088491	92.661	218	11	1	35	252	2	214	1.85e-129	365
Msa0202640	MtrunA17_Chr7g0275151	73.494	166	11	1	87	252	2	134	1.55e-76	228
Msa0202640	MtrunA17_Chr4g0060751	67.273	165	8	1	88	252	11	129	1.02e-64	197
Msa0202640	MtrunA17_Chr6g0460191	74.468	94	24	0	159	252	8	101	2.00e-28	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202640	ATCG00150.1	91.165	249	20	1	6	252	1	249	1.66e-151	422

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Find 46 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATAAAGTTACCTCA+TGG	0.526541	2_1:+25183993	Msa0202640:CDS
AAATCTTCTAAGATGTTAAT+CGG	0.412258	2_1:-25184158	None:intergenic
AACATTTCTATTGGCAAATA+GGG	0.237546	2_1:+25183712	Msa0202640:CDS
AAGAAATTCTGACCGGACGT+TGG	0.546490	2_1:-25183834	None:intergenic
AAGTAGGTCAACATTTCTAT+TGG	0.460455	2_1:+25183703	Msa0202640:CDS
AAGTCGAAAACTAAGTGATA+AGG	0.438506	2_1:-25184189	None:intergenic
AATAATCCCAGAAACATAAC+AGG	0.443207	2_1:-25184284	None:intergenic
ACAGGTATAGGAACTACTAA+AGG	0.585481	2_1:-25184266	None:intergenic
ACATTTCTATTGGCAAATAG+GGG	0.561596	2_1:+25183713	Msa0202640:CDS
ACCTATATAAGCCGCAGCTA+AGG	0.529655	2_1:-25184339	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAGGTCAACATTTCTAT+TGG	+	chr2_1:25183703-25183722	Msa0202640:CDS	30.0%
CAACATTTCTATTGGCAAAT+AGG	+	chr2_1:25183711-25183730	Msa0202640:CDS	30.0%
ACATTTCTATTGGCAAATAG+GGG	+	chr2_1:25183713-25183732	Msa0202640:CDS	30.0%
TCAAGTACTTATTACCTCTT+GGG	+	chr2_1:25183752-25183771	Msa0202640:CDS	30.0%
TATGCGGGTATTTCAAAAAA+AGG	+	chr2_1:25184089-25184108	Msa0202640:CDS	30.0%
GGGTATTTCAAAAAAAGGAT+TGG	+	chr2_1:25184094-25184113	Msa0202640:CDS	30.0%
ATGTTAATCGGTAAAAGGAT+TGG	-	chr2_1:25184149-25184168	None:intergenic	30.0%
CTAAGATGTTAATCGGTAAA+AGG	-	chr2_1:25184154-25184173	None:intergenic	30.0%
AGTCGAAAACTAAGTGATAA+GGG	-	chr2_1:25184191-25184210	None:intergenic	30.0%
AAGTCGAAAACTAAGTGATA+AGG	-	chr2_1:25184192-25184211	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	25183474	25184385	25183474	ID=Msa0202640;Name=Msa0202640
chr2_1	mRNA	25183474	25184385	25183474	ID=Msa0202640-mRNA-1;Parent=Msa0202640;Name=Msa0202640-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|252
chr2_1	exon	25183474	25183482	25183474	ID=Msa0202640-mRNA-1:exon:9663;Parent=Msa0202640-mRNA-1
chr2_1	exon	25183636	25184385	25183636	ID=Msa0202640-mRNA-1:exon:9664;Parent=Msa0202640-mRNA-1
chr2_1	CDS	25183474	25183482	25183474	ID=Msa0202640-mRNA-1:cds;Parent=Msa0202640-mRNA-1
chr2_1	CDS	25183636	25184385	25183636	ID=Msa0202640-mRNA-1:cds;Parent=Msa0202640-mRNA-1

Gene Sequence

>Msa0202640

ATGGAATCGGGCAATATGAATGTTCTATTATGTTACATCAACACATTAAACAGATTCTATGATATATCTGCTGTCGAAGTAGGTCAACATTTCTATTGGCAAATAGGGGATTTTCAAGTGCATGCTCAAGTACTTATTACCTCTTGGGTTGTAATTGCTATCTTATTAATTTCAACCATTCTAGTTGTTAGAAATCCGCAAACTATTCCAACGTCCGGTCAGAATTTCTTTGAATATGTCCTTGAATTCATCCGAGACGTGAGCAAAACTCAGATTGGAGAAGAATATGGTCCGTGGGTTCCGTTTATTGGAACTTTGTTTCTATTTATTTTTGTTTCGAATTGGTCAGGGGCTCTTTTGCCTTGGAAAATTATAAAGTTACCTCATGGAGAATTAGCTGCACCCACAAATGATATAAATACTACTGTTGCATTAGCTTTACTTACGTCAGTAGCCTATTTCTATGCGGGTATTTCAAAAAAAGGATTGGCTTATTTTGGTAAATACATCCAACCAACTCCAATCCTTTTACCGATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCGTTAGTACCTTTAGTAGTTCCTATACCTGTTATGTTTCTGGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCTACCTTAGCTGCGGCTTATATAGGTGAATCTATGGAAGGCCATCATTGA

Protein sequence

>Msa0202640

MESGNMNVLLCYINTLNRFYDISAVEVGQHFYWQIGDFQVHAQVLITSWVVIAILLISTILVVRNPQTIPTSGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDINTTVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH*