AlfalfaGEDB | Msa0405430

M. sativa cultivar zhongmu-4 / Msa0405430

KEGG: K02992
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0405430	RYR53088.1	85.308	211	23	1	16	218	135	345	1.90e-123	365

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0405430	sp\|Q9B1A1\|RR7_LOTJA	89.189	148	8	1	14	153	7	154	2.68e-91	267

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0405430	A0A445CQA9	85.308	211	23	1	16	218	135	345	9.05e-124	365

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0370210	Msa0405430	0.802006	6.885726e-49	-8.615850e-47
Msa0405420	Msa0405430	0.858348	8.761668e-63	-8.615850e-47
Msa0405430	Msa0405440	0.883163	5.661468e-71	-8.615850e-47
Msa0405430	Msa0405510	0.856513	3.057118e-62	-8.615850e-47
Msa0405430	Msa0405520	0.966758	2.379272e-126	-8.615850e-47
Msa0405430	Msa0405530	0.856449	3.194328e-62	-8.615850e-47
Msa0405430	Msa0591270	0.800041	1.735627e-48	-8.615850e-47
Msa0405430	Msa0591290	0.919129	6.620065e-87	-8.615850e-47
Msa0405430	Msa0591310	0.842772	2.108480e-58	-8.615850e-47
Msa0405430	Msa0591350	0.902470	9.384885e-79	-8.615850e-47
Msa0405430	Msa0591360	0.835001	2.162963e-56	-8.615850e-47
Msa0405430	Msa0591380	0.830663	2.587018e-55	-8.615850e-47
Msa0405430	Msa0668630	0.815387	9.486989e-52	-8.615850e-47
Msa0405430	Msa0844260	0.813960	1.964225e-51	-8.615850e-47
Msa0405430	Msa0867680	0.832220	1.070460e-55	-8.615850e-47
Msa0405430	Msa0867690	0.826698	2.351449e-54	-8.615850e-47
Msa0405430	Msa0876520	0.827162	1.821999e-54	-8.615850e-47
Msa0405430	Msa0876530	0.849018	4.231674e-60	-8.615850e-47
Msa0405430	Msa0908220	0.836507	8.987078e-57	-8.615850e-47
Msa0405430	Msa0908230	0.890499	9.321991e-74	-8.615850e-47
Msa0405430	Msa0908240	0.861084	1.315467e-63	-8.615850e-47
Msa0405430	Msa0908310	0.859146	5.059787e-63	-8.615850e-47
Msa0405430	Msa0908320	0.828247	9.997304e-55	-8.615850e-47
Msa0405430	Msa0908370	0.860786	1.620375e-63	-8.615850e-47
Msa0405430	Msa0908380	0.803966	2.708762e-49	-8.615850e-47
Msa0405430	Msa0908430	0.839540	1.491124e-57	-8.615850e-47
Msa0405430	Msa0908440	0.889689	1.934876e-73	-8.615850e-47
Msa0405430	Msa0908450	0.861670	8.713976e-64	-8.615850e-47
Msa0405430	Msa0908530	0.876769	1.073269e-68	-8.615850e-47
Msa0405430	Msa0908540	0.851580	8.091305e-61	-8.615850e-47
Msa0405430	Msa0908590	0.846644	1.908185e-59	-8.615850e-47
Msa0405430	Msa0908600	0.869607	2.727384e-66	-8.615850e-47
Msa0405430	Msa0908610	0.815771	7.792504e-52	-8.615850e-47
Msa0405430	Msa0908650	0.825736	3.984860e-54	-8.615850e-47
Msa0405430	Msa0908660	0.861581	9.275787e-64	-8.615850e-47
Msa0405430	Msa0908670	0.849725	2.689975e-60	-8.615850e-47
Msa0405430	Msa0908720	0.860570	1.883793e-63	-8.615850e-47
Msa0405430	Msa0908730	0.846010	2.839993e-59	-8.615850e-47
Msa0405430	Msa0911190	0.840125	1.049669e-57	-8.615850e-47
Msa0405430	Msa0911200	0.820482	6.700057e-53	-8.615850e-47
Msa0405430	Msa0911230	0.804213	2.406590e-49	-8.615850e-47
Msa0405430	Msa0924820	0.816580	5.139464e-52	-8.615850e-47
Msa0405430	Msa0924830	0.820430	6.889714e-53	-8.615850e-47
Msa0405430	Msa0924930	0.866937	1.977900e-65	-8.615850e-47
Msa0405430	Msa0924940	0.829723	4.389106e-55	-8.615850e-47
Msa0405430	Msa0924970	0.804469	2.127987e-49	-8.615850e-47
Msa0405430	Msa0925020	0.813996	1.928454e-51	-8.615850e-47
Msa0405430	Msa0925100	0.898116	7.272423e-77	-8.615850e-47
Msa0405430	Msa0925110	0.855595	5.675906e-62	-8.615850e-47
Msa0405430	Msa0930990	0.800436	1.442342e-48	-8.615850e-47
Msa0405430	Msa0983630	0.855267	7.074141e-62	-8.615850e-47
Msa0405430	Msa0983640	0.839637	1.406747e-57	-8.615850e-47
Msa0405430	Msa1022050	0.827789	1.288160e-54	-8.615850e-47
Msa0405430	Msa1022060	0.805031	1.623957e-49	-8.615850e-47
Msa0405430	Msa1086550	0.810655	1.034917e-50	-8.615850e-47
Msa0405430	Msa1086560	0.804454	2.143225e-49	-8.615850e-47
Msa0405430	Msa1086590	0.850771	1.369237e-60	-8.615850e-47
Msa0405430	Msa1086600	0.840422	8.778919e-58	-8.615850e-47
Msa0405430	Msa1086720	0.810950	8.930778e-51	-8.615850e-47
Msa0405430	Msa1086730	0.854046	1.597340e-61	-8.615850e-47
Msa0405430	Msa1086740	0.859935	2.931276e-63	-8.615850e-47
Msa0405430	Msa1086790	0.852846	3.531000e-61	-8.615850e-47
Msa0405430	Msa1086800	0.850193	1.988949e-60	-8.615850e-47
Msa0405430	Msa1086830	0.802521	5.392222e-49	-8.615850e-47
Msa0405430	Msa1086960	0.823037	1.718119e-53	-8.615850e-47
Msa0405430	Msa1086970	0.840378	9.014009e-58	-8.615850e-47
Msa0405430	Msa1087030	0.816221	6.185020e-52	-8.615850e-47
Msa0405430	Msa1087040	0.870300	1.619553e-66	-8.615850e-47
Msa0405430	Msa1087050	0.846225	2.483289e-59	-8.615850e-47
Msa0405430	Msa1087110	0.840025	1.114784e-57	-8.615850e-47
Msa0405430	Msa1087120	0.835713	1.429358e-56	-8.615850e-47
Msa0405430	Msa1342040	0.802847	4.619999e-49	-8.615850e-47
Msa0405430	Msa1354420	0.849670	2.785908e-60	-8.615850e-47
Msa0405430	Msa1354430	0.834088	3.668812e-56	-8.615850e-47
Msa0405430	Msa1354480	0.836542	8.801893e-57	-8.615850e-47
Msa0405430	Msa1354490	0.876212	1.670742e-68	-8.615850e-47
Msa0405430	Msa1354500	0.861358	1.085377e-63	-8.615850e-47
Msa0405430	Msa1354550	0.857896	1.194006e-62	-8.615850e-47
Msa0405430	Msa1354560	0.814619	1.404672e-51	-8.615850e-47
Msa0405430	Msa1354610	0.843450	1.390565e-58	-8.615850e-47
Msa0405430	Msa1354620	0.876295	1.564219e-68	-8.615850e-47
Msa0405430	Msa1354630	0.861080	1.319213e-63	-8.615850e-47
Msa0405430	Msa1354680	0.839002	2.056361e-57	-8.615850e-47
Msa0405430	Msa1354690	0.868631	5.655392e-66	-8.615850e-47
Msa0405430	Msa1354740	0.830340	3.103072e-55	-8.615850e-47
Msa0405430	Msa1354750	0.870766	1.138615e-66	-8.615850e-47
Msa0405430	Msa1354760	0.857897	1.193332e-62	-8.615850e-47
Msa0405430	Msa1354810	0.856111	4.010610e-62	-8.615850e-47
Msa0405430	Msa1354820	0.851904	6.549396e-61	-8.615850e-47
Msa0405430	Msa1354980	0.856630	2.824710e-62	-8.615850e-47
Msa0405430	Msa1354990	0.829820	4.157031e-55	-8.615850e-47
Msa0405430	Msa1365890	0.844368	7.896515e-59	-8.615850e-47
Msa0405430	Msa1365900	0.817148	3.832106e-52	-8.615850e-47
Msa0405430	Msa1365950	0.847496	1.114904e-59	-8.615850e-47
Msa0405430	Msa1365960	0.839140	1.893385e-57	-8.615850e-47
Msa0405430	Msa1365970	0.843724	1.174713e-58	-8.615850e-47
Msa0405430	Msa1366080	0.842427	2.602472e-58	-8.615850e-47
Msa0405430	Msa1366090	0.800841	1.192788e-48	-8.615850e-47
Msa0405430	Msa1368230	0.851392	9.144476e-61	-8.615850e-47
Msa0405430	Msa1368240	0.850170	2.018743e-60	-8.615850e-47
Msa0405430	Msa1385410	0.840382	8.995910e-58	-8.615850e-47
Msa0405430	Msa1391090	0.830119	3.514246e-55	-8.615850e-47
Msa0405430	Msa1391100	0.870928	1.007245e-66	-8.615850e-47
Msa0405430	Msa1391110	0.841798	3.818864e-58	-8.615850e-47
Msa0405430	Msa1391160	0.861988	6.964587e-64	-8.615850e-47
Msa0405430	Msa1391170	0.824393	8.270049e-54	-8.615850e-47
Msa0405430	Msa1391220	0.844348	7.992814e-59	-8.615850e-47
Msa0405430	Msa1391230	0.873413	1.499495e-67	-8.615850e-47
Msa0405430	Msa1391240	0.863343	2.663946e-64	-8.615850e-47
Msa0405430	Msa1460120	0.929988	3.147249e-93	-8.615850e-47
Msa0405430	Msa1460130	0.866354	3.031578e-65	-8.615850e-47
Msa0263770	Msa0405430	0.918417	1.599908e-86	-8.615850e-47
Msa0268250	Msa0405430	0.804257	2.356567e-49	-8.615850e-47
Msa0268260	Msa0405430	0.877170	7.787013e-69	-8.615850e-47
Msa0268270	Msa0405430	0.842259	2.884715e-58	-8.615850e-47
Msa0268300	Msa0405430	0.836859	7.307710e-57	-8.615850e-47
Msa0268310	Msa0405430	0.853990	1.657649e-61	-8.615850e-47
Msa0269130	Msa0405430	0.819508	1.119588e-52	-8.615850e-47
Msa0269140	Msa0405430	0.881293	2.706652e-70	-8.615850e-47
Msa0269150	Msa0405430	0.862557	4.657228e-64	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0405430	MtrunA17_CPg0492421	85.333	150	12	1	14	153	7	156	1.50e-87	255
Msa0405430	MtrunA17_Chr4g0016101	85.333	150	12	1	14	153	7	156	1.50e-87	255
Msa0405430	MtrunA17_Chr3g0090841	85.333	150	12	1	14	153	7	156	1.50e-87	255
Msa0405430	MtrunA17_CPg0492431	96.875	64	2	0	155	218	4	67	3.47e-36	128
Msa0405430	MtrunA17_Chr3g0090851	96.875	64	2	0	155	218	4	67	3.47e-36	128
Msa0405430	MtrunA17_Chr4g0016091	96.875	64	2	0	155	218	4	67	3.47e-36	128
Msa0405430	MtrunA17_Chr4g0002541	73.333	60	8	1	32	83	1	60	9.03e-22	84.7
Msa0405430	MtrunA17_Chr4g0057401	87.179	39	5	0	115	153	1	39	6.55e-16	68.9
Msa0405430	MtrunA17_Chr7g0268431	33.758	157	91	4	5	148	50	206	8.85e-13	64.7
Msa0405430	MtrunA17_Chr1g0176261	33.333	159	93	4	3	148	81	239	1.18e-12	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0405430	ATCG00900.1	87.838	148	10	1	14	153	7	154	4.25e-91	264
Msa0405430	ATCG01240.1	87.838	148	10	1	14	153	7	154	4.25e-91	264
Msa0405430	ATMG01270.1	31.655	139	77	4	29	153	11	145	3.40e-13	65.1
Msa0405430	AT2G07696.1	31.655	139	77	4	29	153	11	145	3.40e-13	65.1
Msa0405430	AT2G37270.1	33.333	159	93	4	3	148	49	207	1.02e-11	62.4
Msa0405430	AT2G37270.2	33.333	159	93	4	3	148	49	207	1.02e-11	62.4
Msa0405430	AT3G11940.1	32.704	159	94	4	3	148	49	207	2.72e-11	61.2
Msa0405430	AT3G11940.2	32.704	159	94	4	3	148	49	207	2.72e-11	61.2

Find 33 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGCCGTGACATGAGCGTAAA+AGG	0.177996	3_2:+40186865	None:intergenic
ACTAATCGATTACGATAAAT+TGG	0.238141	3_2:+40186809	None:intergenic
CTTGCCATTCGTTGGTTATT+AGG	0.268444	3_2:-40186560	Msa0405430:CDS
CATCAAGTTCCCGTTGAAAT+AGG	0.307921	3_2:-40186602	Msa0405430:CDS
AAAACGTCCAGGTCGAAATA+TGG	0.317789	3_2:-40186528	Msa0405430:CDS
CAAATTAAGTTCCGAATTAG+TGG	0.342047	3_2:-40186501	Msa0405430:CDS
TGGCGATGCCATACGCAAAA+AGG	0.366109	3_2:-40186462	Msa0405430:CDS
TTTGGCAGCATCCACTAATT+CGG	0.404543	3_2:+40186490	None:intergenic
GCTTGACGTAAAACAGATAG+TGG	0.426676	3_2:+40186683	None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG	0.427761	3_2:-40186632	Msa0405430:CDS
TATGGCATCGCCATTCCCTT+TGG	0.436234	3_2:+40186472	None:intergenic
TGTGTGGATCCTATTTCAAC+GGG	0.470768	3_2:+40186593	None:intergenic
TTATCTATCGAGCTATGAAA+AGG	0.512086	3_2:-40186730	Msa0405430:CDS
GAAAAGCACTTGCCATTCGT+TGG	0.526859	3_2:-40186568	Msa0405430:CDS
GTGGATGCTGCCAAAGGGAA+TGG	0.532446	3_2:-40186482	Msa0405430:CDS
TAATCGATTAGTTAACATGT+TGG	0.538486	3_2:-40186798	Msa0405430:CDS
GGCGCATCCCGAAAACGTCC+AGG	0.540732	3_2:-40186539	Msa0405430:CDS
AAAGGAAGAGACTCATAGAA+TGG	0.548096	3_2:-40186444	Msa0405430:CDS
TTGTGTGGATCCTATTTCAA+CGG	0.548545	3_2:+40186592	None:intergenic
GCCGTGACATGAGCGTAAAA+GGG	0.558201	3_2:+40186866	None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG	0.561694	3_2:+40186099	None:intergenic
TCATGGGTTCTTCTCTCCAT+CGG	0.567612	3_2:+40185930	None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG	0.571426	3_2:-40185946	Msa0405430:CDS
AATTAGTGGATGCTGCCAAA+GGG	0.575951	3_2:-40186487	Msa0405430:CDS
GAATTAGTGGATGCTGCCAA+AGG	0.584526	3_2:-40186488	Msa0405430:CDS
AGAGACTCATAGAATGGCAG+AGG	0.593635	3_2:-40186438	Msa0405430:CDS
TTGAAAGCCATATTTCGACC+TGG	0.605724	3_2:+40186521	None:intergenic
TGCGCCTAATAACCAACGAA+TGG	0.620213	3_2:+40186556	None:intergenic
TCGATTACGATAAATTGGAT+CGG	0.627987	3_2:+40186814	None:intergenic
AAGTTTAGTAATGAGCATAA+CGG	0.644237	3_2:-40185963	Msa0405430:CDS
GTTAACCGTATTATGAAACA+CGG	0.650772	3_2:-40186776	Msa0405430:CDS
TTTACGCTCATGTCACGGCG+AGG	0.672550	3_2:-40186862	Msa0405430:CDS
GTTGAAATAGGATCCACACA+AGG	0.731975	3_2:-40186590	Msa0405430:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAAATAAAGAGGAATATT+TGG	-	chr3_2:40186586-40186605	Msa0405430:CDS	15.0%
!!	AATAAATAAAGAGGAATATT+TGG	-	chr3_2:40186586-40186605	Msa0405430:CDS	15.0%
!!	AGAATCAATAGAAAAAGAAT+CGG	-	chr3_2:40186483-40186502	Msa0405430:CDS	20.0%
!!	TTGCTTAAGAATAAATAAAG+AGG	-	chr3_2:40186577-40186596	Msa0405430:CDS	20.0%
!!!	AGGAATATTTGGTATTTTTT+TGG	-	chr3_2:40186597-40186616	Msa0405430:CDS	20.0%
!!	AGAATCAATAGAAAAAGAAT+CGG	-	chr3_2:40186483-40186502	Msa0405430:CDS	20.0%
!!	TTGCTTAAGAATAAATAAAG+AGG	-	chr3_2:40186577-40186596	Msa0405430:CDS	20.0%
!!!	AGGAATATTTGGTATTTTTT+TGG	-	chr3_2:40186597-40186616	Msa0405430:CDS	20.0%
!	ACTAATCGATTACGATAAAT+TGG	+	chr3_2:40185997-40186016	None:intergenic	25.0%
!!	TAATCGATTAGTTAACATGT+TGG	-	chr3_2:40186005-40186024	Msa0405430:CDS	25.0%
!!	TTTTTCCGTGTTTCATAATA+CGG	+	chr3_2:40186035-40186054	None:intergenic	25.0%
!!	GATTCTTTTCCAATTATGTA+TGG	+	chr3_2:40186469-40186488	None:intergenic	25.0%
!	GAAGAATTAGACCAAAAATT+AGG	+	chr3_2:40186756-40186775	None:intergenic	25.0%
!	AAGTTTAGTAATGAGCATAA+CGG	-	chr3_2:40186840-40186859	Msa0405430:CDS	25.0%
!	ACTAATCGATTACGATAAAT+TGG	+	chr3_2:40185997-40186016	None:intergenic	25.0%
!!	TAATCGATTAGTTAACATGT+TGG	-	chr3_2:40186005-40186024	Msa0405430:CDS	25.0%
!!	TTTTTCCGTGTTTCATAATA+CGG	+	chr3_2:40186035-40186054	None:intergenic	25.0%
!!	GATTCTTTTCCAATTATGTA+TGG	+	chr3_2:40186469-40186488	None:intergenic	25.0%
!	GAAGAATTAGACCAAAAATT+AGG	+	chr3_2:40186756-40186775	None:intergenic	25.0%
!	AAGTTTAGTAATGAGCATAA+CGG	-	chr3_2:40186840-40186859	Msa0405430:CDS	25.0%
!	ATAAATTGGATCGGATTTTG+CGG	+	chr3_2:40185983-40186002	None:intergenic	30.0%
	TCGATTACGATAAATTGGAT+CGG	+	chr3_2:40185992-40186011	None:intergenic	30.0%
	GTTAACCGTATTATGAAACA+CGG	-	chr3_2:40186027-40186046	Msa0405430:CDS	30.0%
	GAAACACGGAAAAAAATCAT+TGG	-	chr3_2:40186041-40186060	Msa0405430:CDS	30.0%
	TTATCTATCGAGCTATGAAA+AGG	-	chr3_2:40186073-40186092	Msa0405430:CDS	30.0%
!!	TCTTGCTTTTACTGCTATAT+CGG	+	chr3_2:40186163-40186182	None:intergenic	30.0%
	CAAATTAAGTTCCGAATTAG+TGG	-	chr3_2:40186302-40186321	Msa0405430:intron	30.0%
	ACATAGACCTATGTTATGTA+TGG	-	chr3_2:40186441-40186460	Msa0405430:CDS	30.0%
	TATGGATCCATACATAACAT+AGG	+	chr3_2:40186451-40186470	None:intergenic	30.0%
	TGTATGGATCCATACATAAT+TGG	-	chr3_2:40186457-40186476	Msa0405430:CDS	30.0%
	GAAAGACGAAATAGAAATGA+TGG	-	chr3_2:40186531-40186550	Msa0405430:CDS	30.0%
	ATCGAAAAGAAGCAAATGAA+AGG	+	chr3_2:40186707-40186726	None:intergenic	30.0%
!	TTTCATTTGCTTCTTTTCGA+TGG	-	chr3_2:40186706-40186725	Msa0405430:CDS	30.0%
!!!	CGATGGAAGTTTTATTTTTC+CGG	-	chr3_2:40186723-40186742	Msa0405430:CDS	30.0%
	CCAAAAATTAGGATCAATTC+CGG	+	chr3_2:40186745-40186764	None:intergenic	30.0%
!	AGATAGATCTTTTTGATCAG+AGG	+	chr3_2:40186797-40186816	None:intergenic	30.0%
	CTGATCAAAAAGATCTATCT+TGG	-	chr3_2:40186797-40186816	Msa0405430:CDS	30.0%
!	ATAAATTGGATCGGATTTTG+CGG	+	chr3_2:40185983-40186002	None:intergenic	30.0%
	TCGATTACGATAAATTGGAT+CGG	+	chr3_2:40185992-40186011	None:intergenic	30.0%
	GTTAACCGTATTATGAAACA+CGG	-	chr3_2:40186027-40186046	Msa0405430:CDS	30.0%
	GAAACACGGAAAAAAATCAT+TGG	-	chr3_2:40186041-40186060	Msa0405430:CDS	30.0%
	TTATCTATCGAGCTATGAAA+AGG	-	chr3_2:40186073-40186092	Msa0405430:CDS	30.0%
!!	TCTTGCTTTTACTGCTATAT+CGG	+	chr3_2:40186163-40186182	None:intergenic	30.0%
	CAAATTAAGTTCCGAATTAG+TGG	-	chr3_2:40186302-40186321	Msa0405430:intron	30.0%
	ACATAGACCTATGTTATGTA+TGG	-	chr3_2:40186441-40186460	Msa0405430:CDS	30.0%
	TATGGATCCATACATAACAT+AGG	+	chr3_2:40186451-40186470	None:intergenic	30.0%
	TGTATGGATCCATACATAAT+TGG	-	chr3_2:40186457-40186476	Msa0405430:CDS	30.0%
	GAAAGACGAAATAGAAATGA+TGG	-	chr3_2:40186531-40186550	Msa0405430:CDS	30.0%
	ATCGAAAAGAAGCAAATGAA+AGG	+	chr3_2:40186707-40186726	None:intergenic	30.0%
!	TTTCATTTGCTTCTTTTCGA+TGG	-	chr3_2:40186706-40186725	Msa0405430:CDS	30.0%
!!!	CGATGGAAGTTTTATTTTTC+CGG	-	chr3_2:40186723-40186742	Msa0405430:CDS	30.0%
	CCAAAAATTAGGATCAATTC+CGG	+	chr3_2:40186745-40186764	None:intergenic	30.0%
!	AGATAGATCTTTTTGATCAG+AGG	+	chr3_2:40186797-40186816	None:intergenic	30.0%
	CTGATCAAAAAGATCTATCT+TGG	-	chr3_2:40186797-40186816	Msa0405430:CDS	30.0%
!	TTTTACGTCAAGCAATACGT+GGG	-	chr3_2:40186130-40186149	Msa0405430:intron	35.0%
!!	CTTGCTTTTACTGCTATATC+GGG	+	chr3_2:40186162-40186181	None:intergenic	35.0%
	TTGTGTGGATCCTATTTCAA+CGG	+	chr3_2:40186214-40186233	None:intergenic	35.0%
	AAAGGAAGAGACTCATAGAA+TGG	-	chr3_2:40186359-40186378	Msa0405430:intron	35.0%
!	ATTTTCGTTAATCCATGAGC+AGG	-	chr3_2:40186406-40186425	Msa0405430:intron	35.0%
!	CCGGAATTGATCCTAATTTT+TGG	-	chr3_2:40186742-40186761	Msa0405430:CDS	35.0%
!	TTTTACGTCAAGCAATACGT+GGG	-	chr3_2:40186130-40186149	Msa0405430:intron	35.0%
!!	CTTGCTTTTACTGCTATATC+GGG	+	chr3_2:40186162-40186181	None:intergenic	35.0%
	TTGTGTGGATCCTATTTCAA+CGG	+	chr3_2:40186214-40186233	None:intergenic	35.0%
	AAAGGAAGAGACTCATAGAA+TGG	-	chr3_2:40186359-40186378	Msa0405430:intron	35.0%
!	ATTTTCGTTAATCCATGAGC+AGG	-	chr3_2:40186406-40186425	Msa0405430:intron	35.0%
!	CCGGAATTGATCCTAATTTT+TGG	-	chr3_2:40186742-40186761	Msa0405430:CDS	35.0%
	GCTTGACGTAAAACAGATAG+TGG	+	chr3_2:40186123-40186142	None:intergenic	40.0%
!	GTTTTACGTCAAGCAATACG+TGG	-	chr3_2:40186129-40186148	Msa0405430:intron	40.0%
	TTTACGTCAAGCAATACGTG+GGG	-	chr3_2:40186131-40186150	Msa0405430:intron	40.0%
	GTAAAAGCAAGACGCGTAAA+CGG	-	chr3_2:40186171-40186190	Msa0405430:intron	40.0%
	CATCAAGTTCCCGTTGAAAT+AGG	-	chr3_2:40186201-40186220	Msa0405430:intron	40.0%
	TGTGTGGATCCTATTTCAAC+GGG	+	chr3_2:40186213-40186232	None:intergenic	40.0%
	GTTGAAATAGGATCCACACA+AGG	-	chr3_2:40186213-40186232	Msa0405430:intron	40.0%
!	CTTGCCATTCGTTGGTTATT+AGG	-	chr3_2:40186243-40186262	Msa0405430:intron	40.0%
!	TATTTCGACCTGGACGTTTT+CGG	+	chr3_2:40186275-40186294	None:intergenic	40.0%
	AAAACGTCCAGGTCGAAATA+TGG	-	chr3_2:40186275-40186294	Msa0405430:intron	40.0%
	TTGAAAGCCATATTTCGACC+TGG	+	chr3_2:40186285-40186304	None:intergenic	40.0%
	TTTGGCAGCATCCACTAATT+CGG	+	chr3_2:40186316-40186335	None:intergenic	40.0%
!	AATTAGTGGATGCTGCCAAA+GGG	-	chr3_2:40186316-40186335	Msa0405430:intron	40.0%
!	AGTCTCTTCCTTTTTGCGTA+TGG	+	chr3_2:40186352-40186371	None:intergenic	40.0%
	GTGTATATAGATCCTGCTCA+TGG	+	chr3_2:40186421-40186440	None:intergenic	40.0%
!	ATGGCTCAACTAAGCACTTT+TGG	-	chr3_2:40186550-40186569	Msa0405430:CDS	40.0%
!	TGGCTCAACTAAGCACTTTT+GGG	-	chr3_2:40186551-40186570	Msa0405430:CDS	40.0%
	GCTTGACGTAAAACAGATAG+TGG	+	chr3_2:40186123-40186142	None:intergenic	40.0%
!	GTTTTACGTCAAGCAATACG+TGG	-	chr3_2:40186129-40186148	Msa0405430:intron	40.0%
	TTTACGTCAAGCAATACGTG+GGG	-	chr3_2:40186131-40186150	Msa0405430:intron	40.0%
	GTAAAAGCAAGACGCGTAAA+CGG	-	chr3_2:40186171-40186190	Msa0405430:intron	40.0%
	CATCAAGTTCCCGTTGAAAT+AGG	-	chr3_2:40186201-40186220	Msa0405430:intron	40.0%
	TGTGTGGATCCTATTTCAAC+GGG	+	chr3_2:40186213-40186232	None:intergenic	40.0%
	GTTGAAATAGGATCCACACA+AGG	-	chr3_2:40186213-40186232	Msa0405430:intron	40.0%
!	CTTGCCATTCGTTGGTTATT+AGG	-	chr3_2:40186243-40186262	Msa0405430:intron	40.0%
!	TATTTCGACCTGGACGTTTT+CGG	+	chr3_2:40186275-40186294	None:intergenic	40.0%
	AAAACGTCCAGGTCGAAATA+TGG	-	chr3_2:40186275-40186294	Msa0405430:intron	40.0%
	TTGAAAGCCATATTTCGACC+TGG	+	chr3_2:40186285-40186304	None:intergenic	40.0%
	TTTGGCAGCATCCACTAATT+CGG	+	chr3_2:40186316-40186335	None:intergenic	40.0%
!	AATTAGTGGATGCTGCCAAA+GGG	-	chr3_2:40186316-40186335	Msa0405430:intron	40.0%
!	AGTCTCTTCCTTTTTGCGTA+TGG	+	chr3_2:40186352-40186371	None:intergenic	40.0%
	GTGTATATAGATCCTGCTCA+TGG	+	chr3_2:40186421-40186440	None:intergenic	40.0%
!	ATGGCTCAACTAAGCACTTT+TGG	-	chr3_2:40186550-40186569	Msa0405430:CDS	40.0%
!	TGGCTCAACTAAGCACTTTT+GGG	-	chr3_2:40186551-40186570	Msa0405430:CDS	40.0%
!	TCCCTTTTACGCTCATGTCA+CGG	-	chr3_2:40185936-40185955	Msa0405430:CDS	45.0%
!!	GAAAAGCACTTGCCATTCGT+TGG	-	chr3_2:40186235-40186254	Msa0405430:intron	45.0%
	TGCGCCTAATAACCAACGAA+TGG	+	chr3_2:40186250-40186269	None:intergenic	45.0%
!	ATTTCGACCTGGACGTTTTC+GGG	+	chr3_2:40186274-40186293	None:intergenic	45.0%
!	GAATTAGTGGATGCTGCCAA+AGG	-	chr3_2:40186315-40186334	Msa0405430:intron	45.0%
	AGAGACTCATAGAATGGCAG+AGG	-	chr3_2:40186365-40186384	Msa0405430:intron	45.0%
!	GGCTCAACTAAGCACTTTTG+GGG	-	chr3_2:40186552-40186571	Msa0405430:CDS	45.0%
	TCATGGGTTCTTCTCTCCAT+CGG	+	chr3_2:40186876-40186895	None:intergenic	45.0%
!	TCCCTTTTACGCTCATGTCA+CGG	-	chr3_2:40185936-40185955	Msa0405430:CDS	45.0%
!!	GAAAAGCACTTGCCATTCGT+TGG	-	chr3_2:40186235-40186254	Msa0405430:intron	45.0%
	TGCGCCTAATAACCAACGAA+TGG	+	chr3_2:40186250-40186269	None:intergenic	45.0%
!	ATTTCGACCTGGACGTTTTC+GGG	+	chr3_2:40186274-40186293	None:intergenic	45.0%
!	GAATTAGTGGATGCTGCCAA+AGG	-	chr3_2:40186315-40186334	Msa0405430:intron	45.0%
	AGAGACTCATAGAATGGCAG+AGG	-	chr3_2:40186365-40186384	Msa0405430:intron	45.0%
!	GGCTCAACTAAGCACTTTTG+GGG	-	chr3_2:40186552-40186571	Msa0405430:CDS	45.0%
	TCATGGGTTCTTCTCTCCAT+CGG	+	chr3_2:40186876-40186895	None:intergenic	45.0%
	GCCGTGACATGAGCGTAAAA+GGG	+	chr3_2:40185940-40185959	None:intergenic	50.0%
!	GGCAAGTGCTTTTCCTTGTG+TGG	+	chr3_2:40186229-40186248	None:intergenic	50.0%
	TATGGCATCGCCATTCCCTT+TGG	+	chr3_2:40186334-40186353	None:intergenic	50.0%
	TGGCGATGCCATACGCAAAA+AGG	-	chr3_2:40186341-40186360	Msa0405430:intron	50.0%
	GCCGTGACATGAGCGTAAAA+GGG	+	chr3_2:40185940-40185959	None:intergenic	50.0%
!	GGCAAGTGCTTTTCCTTGTG+TGG	+	chr3_2:40186229-40186248	None:intergenic	50.0%
	TATGGCATCGCCATTCCCTT+TGG	+	chr3_2:40186334-40186353	None:intergenic	50.0%
	TGGCGATGCCATACGCAAAA+AGG	-	chr3_2:40186341-40186360	Msa0405430:intron	50.0%
	CGCCGTGACATGAGCGTAAA+AGG	+	chr3_2:40185941-40185960	None:intergenic	55.0%
	TTTACGCTCATGTCACGGCG+AGG	-	chr3_2:40185941-40185960	Msa0405430:CDS	55.0%
	GTGGATGCTGCCAAAGGGAA+TGG	-	chr3_2:40186321-40186340	Msa0405430:intron	55.0%
	TAACGGCGCTGTTGTTCCGA+TGG	-	chr3_2:40186857-40186876	Msa0405430:CDS	55.0%
	CGCCGTGACATGAGCGTAAA+AGG	+	chr3_2:40185941-40185960	None:intergenic	55.0%
	TTTACGCTCATGTCACGGCG+AGG	-	chr3_2:40185941-40185960	Msa0405430:CDS	55.0%
	GTGGATGCTGCCAAAGGGAA+TGG	-	chr3_2:40186321-40186340	Msa0405430:intron	55.0%
	TAACGGCGCTGTTGTTCCGA+TGG	-	chr3_2:40186857-40186876	Msa0405430:CDS	55.0%
	GGCGCATCCCGAAAACGTCC+AGG	-	chr3_2:40186264-40186283	Msa0405430:intron	65.0%
	GGCGCATCCCGAAAACGTCC+AGG	-	chr3_2:40186264-40186283	Msa0405430:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	40185928	40186897	40185928	ID=Msa0405430;Name=Msa0405430
chr3_2	mRNA	40185928	40186897	40185928	ID=Msa0405430-mRNA-1;Parent=Msa0405430;Name=Msa0405430-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0\|0\|0\|1\|0\|0\|3\|0\|218
chr3_2	exon	40186678	40186897	40186678	ID=Msa0405430-mRNA-1:exon:7801;Parent=Msa0405430-mRNA-1
chr3_2	exon	40186414	40186653	40186414	ID=Msa0405430-mRNA-1:exon:7800;Parent=Msa0405430-mRNA-1
chr3_2	exon	40185928	40186121	40185928	ID=Msa0405430-mRNA-1:exon:7799;Parent=Msa0405430-mRNA-1
chr3_2	CDS	40186678	40186897	40186678	ID=Msa0405430-mRNA-1:cds;Parent=Msa0405430-mRNA-1
chr3_2	CDS	40186414	40186653	40186414	ID=Msa0405430-mRNA-1:cds;Parent=Msa0405430-mRNA-1
chr3_2	CDS	40185928	40186121	40185928	ID=Msa0405430-mRNA-1:cds;Parent=Msa0405430-mRNA-1

Gene Sequence

>Msa0405430

ATGGATTCTCCCTTTTACGCTCATGTCACGGCGAGGTACTGCAGAAAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa0405430

MDSPFYAHVTARYCRKKTAKSDPIYRNRLVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAILKARRVNGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI