AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0591350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591350 MtrunA17_CPg0492421 88.060 134 10 2 83 210 23 156 7.82e-77 230
Msa0591350 MtrunA17_Chr4g0016101 88.060 134 10 2 83 210 23 156 7.82e-77 230
Msa0591350 MtrunA17_Chr3g0090841 88.060 134 10 2 83 210 23 156 7.82e-77 230
Msa0591350 MtrunA17_CPg0492431 96.875 64 2 0 212 275 4 67 6.90e-36 129
Msa0591350 MtrunA17_Chr3g0090851 96.875 64 2 0 212 275 4 67 6.90e-36 129
Msa0591350 MtrunA17_Chr4g0016091 96.875 64 2 0 212 275 4 67 6.90e-36 129
Msa0591350 MtrunA17_Chr4g0002541 85.000 60 9 0 85 144 1 60 7.19e-30 107
Msa0591350 MtrunA17_Chr4g0057401 87.179 39 5 0 172 210 1 39 1.53e-15 68.9
Msa0591350 MtrunA17_Chr7g0234981 50.000 74 25 2 21 82 9 82 2.40e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591350 ATCG00900.1 91.667 132 7 1 83 210 23 154 4.48e-82 244
Msa0591350 ATCG01240.1 91.667 132 7 1 83 210 23 154 4.48e-82 244
Msa0591350 ATCG00905.1 91.176 34 3 0 49 82 41 74 2.60e-14 67.4
Msa0591350 ATCG01230.1 91.176 34 3 0 49 82 41 74 2.60e-14 67.4
Msa0591350 ATMG01270.1 30.657 137 87 3 83 212 12 147 4.44e-12 63.2
Msa0591350 AT2G07696.1 30.657 137 87 3 83 212 12 147 4.44e-12 63.2

Find 52 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGGGTATCTTTCACAAAA+AGG 0.268806 4_2:+15612568 Msa0591350:CDS
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 4_2:+15613525 Msa0591350:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 4_2:+15613599 Msa0591350:CDS
AGATACCCGCTTTCGTGCTT+TGG 0.338855 4_2:-15612556 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 4_2:+15613626 Msa0591350:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 4_2:+15613665 Msa0591350:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 4_2:-15613150 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 4_2:+15612585 Msa0591350:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 4_2:-15613637 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 4_2:-15613177 None:intergenic
GCTTGACGTAAAACAGATAG+TGG 0.426676 4_2:-15613444 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 4_2:+15613495 Msa0591350:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 4_2:-15613655 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 4_2:-15612594 None:intergenic
TACCCGCTTTCGTGCTTTGG+TGG 0.452970 4_2:-15612553 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 4_2:-15613534 None:intergenic
AACTCCAGTTACTTCGCAAA+TGG 0.476097 4_2:-15611844 None:intergenic
ACCCGCTTTCGTGCTTTGGT+GGG 0.499056 4_2:-15612552 None:intergenic
GATCGTTGGCACAAGAAAGA+AGG 0.502174 4_2:-15611818 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 4_2:-15613149 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 4_2:+15613150 Msa0591350:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 4_2:+15613397 Msa0591350:CDS
TTCGCAAATGGTAAGATCGT+TGG 0.515541 4_2:-15611832 None:intergenic
AAATGGATAAATCAGAACTA+AGG 0.516319 4_2:+15611776 None:intergenic
AGAACTAAGGCAAGATGAGA+TGG 0.530899 4_2:+15611789 Msa0591350:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 4_2:+15613645 Msa0591350:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 4_2:+15613329 Msa0591350:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 4_2:+15613588 Msa0591350:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 4_2:+15613683 Msa0591350:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 4_2:-15613535 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.549035 4_2:+15612551 Msa0591350:CDS
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 4_2:-15614027 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 4_2:+15613077 Msa0591350:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 4_2:-15614196 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 4_2:+15614180 Msa0591350:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 4_2:+15613640 Msa0591350:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 4_2:+15613639 Msa0591350:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 4_2:+15613124 Msa0591350:CDS
ATCGTTGGCACAAGAAAGAA+GGG 0.587101 4_2:-15611817 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.587922 4_2:+15612550 Msa0591350:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 4_2:+15613078 Msa0591350:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 4_2:+15613689 Msa0591350:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 4_2:+15613163 Msa0591350:CDS
TTGAAAGCCATATTTCGACC+TGG 0.605724 4_2:-15613606 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 4_2:+15613142 Msa0591350:CDS
GGAAGGGTTAAGGATTTACC+TGG 0.642987 4_2:+15613100 Msa0591350:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 4_2:+15614163 Msa0591350:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 4_2:+15613351 Msa0591350:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 4_2:+15613079 Msa0591350:intron
ACAATGTGATATCTCACACC+AGG 0.678462 4_2:-15613118 None:intergenic
TTTACGTCAAGCAATACATG+GGG 0.708268 4_2:+15613455 Msa0591350:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 4_2:+15613537 Msa0591350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATTTACATTTTTCA+GGG - chr4_2:15611944-15611963 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - chr4_2:15611945-15611964 None:intergenic 10.0%
!!! AATGTAAATTTTTTTTTCTT+AGG + chr4_2:15611949-15611968 Msa0591350:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - chr4_2:15611944-15611963 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - chr4_2:15611945-15611964 None:intergenic 10.0%
!!! AATGTAAATTTTTTTTTCTT+AGG + chr4_2:15611949-15611968 Msa0591350:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611918-15611937 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611908-15611927 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611918-15611937 None:intergenic 100.0%
!! CATAGAATAGAAAATATTAA+TGG + chr4_2:15612400-15612419 Msa0591350:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - chr4_2:15613233-15613252 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - chr4_2:15613234-15613253 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - chr4_2:15613235-15613254 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + chr4_2:15613909-15613928 Msa0591350:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + chr4_2:15612400-15612419 Msa0591350:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - chr4_2:15613233-15613252 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - chr4_2:15613234-15613253 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - chr4_2:15613235-15613254 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + chr4_2:15613909-15613928 Msa0591350:intron 15.0%
!!! TTAATATACAACATAGGTTT+TGG - chr4_2:15612127-15612146 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + chr4_2:15612761-15612780 Msa0591350:intron 20.0%
!!! AATTAGTTCTCGTTATTTTT+AGG + chr4_2:15612806-15612825 Msa0591350:intron 20.0%
!!! ATTAGTTCTCGTTATTTTTA+GGG + chr4_2:15612807-15612826 Msa0591350:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + chr4_2:15613231-15613250 Msa0591350:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + chr4_2:15613807-15613826 Msa0591350:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + chr4_2:15613900-15613919 Msa0591350:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + chr4_2:15613920-15613939 Msa0591350:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - chr4_2:15612127-15612146 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + chr4_2:15612761-15612780 Msa0591350:intron 20.0%
!!! AATTAGTTCTCGTTATTTTT+AGG + chr4_2:15612806-15612825 Msa0591350:intron 20.0%
!!! ATTAGTTCTCGTTATTTTTA+GGG + chr4_2:15612807-15612826 Msa0591350:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + chr4_2:15613231-15613250 Msa0591350:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + chr4_2:15613807-15613826 Msa0591350:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + chr4_2:15613900-15613919 Msa0591350:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + chr4_2:15613920-15613939 Msa0591350:intron 20.0%
!!! CACATAAGAACTTTTAGAAT+GGG - chr4_2:15611881-15611900 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - chr4_2:15611882-15611901 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - chr4_2:15612025-15612044 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - chr4_2:15612026-15612045 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - chr4_2:15612027-15612046 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + chr4_2:15612128-15612147 Msa0591350:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - chr4_2:15612133-15612152 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - chr4_2:15612270-15612289 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + chr4_2:15612508-15612527 Msa0591350:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + chr4_2:15612584-15612603 Msa0591350:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + chr4_2:15612585-15612604 Msa0591350:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + chr4_2:15612652-15612671 Msa0591350:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + chr4_2:15612662-15612681 Msa0591350:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - chr4_2:15612725-15612744 None:intergenic 25.0%
!!! TTAGTTCTCGTTATTTTTAG+GGG + chr4_2:15612808-15612827 Msa0591350:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - chr4_2:15612863-15612882 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - chr4_2:15613063-15613082 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - chr4_2:15613214-15613233 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - chr4_2:15613321-15613340 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + chr4_2:15613329-15613348 Msa0591350:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - chr4_2:15613359-15613378 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - chr4_2:15613793-15613812 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - chr4_2:15614079-15614098 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + chr4_2:15614163-15614182 Msa0591350:CDS 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - chr4_2:15611881-15611900 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - chr4_2:15611882-15611901 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - chr4_2:15612025-15612044 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - chr4_2:15612026-15612045 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - chr4_2:15612027-15612046 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + chr4_2:15612128-15612147 Msa0591350:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - chr4_2:15612133-15612152 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - chr4_2:15612270-15612289 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + chr4_2:15612508-15612527 Msa0591350:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + chr4_2:15612584-15612603 Msa0591350:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + chr4_2:15612585-15612604 Msa0591350:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + chr4_2:15612652-15612671 Msa0591350:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + chr4_2:15612662-15612681 Msa0591350:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - chr4_2:15612725-15612744 None:intergenic 25.0%
!!! TTAGTTCTCGTTATTTTTAG+GGG + chr4_2:15612808-15612827 Msa0591350:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - chr4_2:15612863-15612882 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - chr4_2:15613063-15613082 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - chr4_2:15613214-15613233 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - chr4_2:15613321-15613340 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + chr4_2:15613329-15613348 Msa0591350:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - chr4_2:15613359-15613378 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - chr4_2:15613793-15613812 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - chr4_2:15614079-15614098 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + chr4_2:15614163-15614182 Msa0591350:CDS 25.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - chr4_2:15611876-15611895 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - chr4_2:15611938-15611957 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + chr4_2:15611993-15612012 Msa0591350:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + chr4_2:15612070-15612089 Msa0591350:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - chr4_2:15612641-15612660 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - chr4_2:15612642-15612661 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + chr4_2:15612640-15612659 Msa0591350:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - chr4_2:15612657-15612676 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + chr4_2:15612655-15612674 Msa0591350:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + chr4_2:15612661-15612680 Msa0591350:intron 30.0%
!!! TAGTTCTCGTTATTTTTAGG+GGG + chr4_2:15612809-15612828 Msa0591350:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - chr4_2:15613053-15613072 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + chr4_2:15613077-15613096 Msa0591350:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + chr4_2:15613179-15613198 Msa0591350:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - chr4_2:15613307-15613326 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - chr4_2:15613316-15613335 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + chr4_2:15613351-15613370 Msa0591350:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + chr4_2:15613365-15613384 Msa0591350:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + chr4_2:15613397-15613416 Msa0591350:CDS 30.0%
! TTTTACGTCAAGCAATACAT+GGG + chr4_2:15613454-15613473 Msa0591350:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - chr4_2:15613487-15613506 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + chr4_2:15613626-15613645 Msa0591350:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + chr4_2:15613765-15613784 Msa0591350:intron 30.0%
TATGGATCCATACATAACAT+AGG - chr4_2:15613775-15613794 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + chr4_2:15613781-15613800 Msa0591350:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + chr4_2:15613855-15613874 Msa0591350:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - chr4_2:15614030-15614049 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + chr4_2:15614029-15614048 Msa0591350:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + chr4_2:15614046-15614065 Msa0591350:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - chr4_2:15614068-15614087 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - chr4_2:15614120-15614139 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + chr4_2:15614120-15614139 Msa0591350:CDS 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - chr4_2:15611876-15611895 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - chr4_2:15611938-15611957 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + chr4_2:15611993-15612012 Msa0591350:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + chr4_2:15612070-15612089 Msa0591350:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - chr4_2:15612641-15612660 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - chr4_2:15612642-15612661 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + chr4_2:15612640-15612659 Msa0591350:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - chr4_2:15612657-15612676 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + chr4_2:15612655-15612674 Msa0591350:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + chr4_2:15612661-15612680 Msa0591350:intron 30.0%
!!! TAGTTCTCGTTATTTTTAGG+GGG + chr4_2:15612809-15612828 Msa0591350:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - chr4_2:15613053-15613072 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + chr4_2:15613077-15613096 Msa0591350:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + chr4_2:15613179-15613198 Msa0591350:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - chr4_2:15613307-15613326 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - chr4_2:15613316-15613335 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + chr4_2:15613351-15613370 Msa0591350:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + chr4_2:15613365-15613384 Msa0591350:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + chr4_2:15613397-15613416 Msa0591350:CDS 30.0%
! TTTTACGTCAAGCAATACAT+GGG + chr4_2:15613454-15613473 Msa0591350:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - chr4_2:15613487-15613506 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + chr4_2:15613626-15613645 Msa0591350:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + chr4_2:15613765-15613784 Msa0591350:intron 30.0%
TATGGATCCATACATAACAT+AGG - chr4_2:15613775-15613794 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + chr4_2:15613781-15613800 Msa0591350:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + chr4_2:15613855-15613874 Msa0591350:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - chr4_2:15614030-15614049 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + chr4_2:15614029-15614048 Msa0591350:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + chr4_2:15614046-15614065 Msa0591350:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - chr4_2:15614068-15614087 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - chr4_2:15614120-15614139 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + chr4_2:15614120-15614139 Msa0591350:CDS 30.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - chr4_2:15611937-15611956 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + chr4_2:15612057-15612076 Msa0591350:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - chr4_2:15612063-15612082 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - chr4_2:15612161-15612180 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + chr4_2:15612439-15612458 Msa0591350:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - chr4_2:15612467-15612486 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + chr4_2:15612639-15612658 Msa0591350:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + chr4_2:15612865-15612884 Msa0591350:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - chr4_2:15612893-15612912 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + chr4_2:15612895-15612914 Msa0591350:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - chr4_2:15612963-15612982 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - chr4_2:15612973-15612992 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - chr4_2:15612974-15612993 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + chr4_2:15613031-15613050 Msa0591350:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - chr4_2:15613052-15613071 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + chr4_2:15613076-15613095 Msa0591350:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + chr4_2:15613078-15613097 Msa0591350:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - chr4_2:15613180-15613199 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + chr4_2:15613178-15613197 Msa0591350:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + chr4_2:15613180-15613199 Msa0591350:intron 35.0%
! GTTTTACGTCAAGCAATACA+TGG + chr4_2:15613453-15613472 Msa0591350:CDS 35.0%
TTTACGTCAAGCAATACATG+GGG + chr4_2:15613455-15613474 Msa0591350:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - chr4_2:15613486-15613505 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - chr4_2:15613538-15613557 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + chr4_2:15613683-15613702 Msa0591350:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + chr4_2:15613730-15613749 Msa0591350:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + chr4_2:15614065-15614084 Msa0591350:CDS 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - chr4_2:15611937-15611956 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + chr4_2:15612057-15612076 Msa0591350:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - chr4_2:15612063-15612082 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - chr4_2:15612161-15612180 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + chr4_2:15612439-15612458 Msa0591350:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - chr4_2:15612467-15612486 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + chr4_2:15612639-15612658 Msa0591350:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + chr4_2:15612865-15612884 Msa0591350:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - chr4_2:15612893-15612912 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + chr4_2:15612895-15612914 Msa0591350:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - chr4_2:15612963-15612982 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - chr4_2:15612973-15612992 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - chr4_2:15612974-15612993 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + chr4_2:15613031-15613050 Msa0591350:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - chr4_2:15613052-15613071 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + chr4_2:15613076-15613095 Msa0591350:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + chr4_2:15613078-15613097 Msa0591350:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - chr4_2:15613180-15613199 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + chr4_2:15613178-15613197 Msa0591350:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + chr4_2:15613180-15613199 Msa0591350:intron 35.0%
! GTTTTACGTCAAGCAATACA+TGG + chr4_2:15613453-15613472 Msa0591350:CDS 35.0%
TTTACGTCAAGCAATACATG+GGG + chr4_2:15613455-15613474 Msa0591350:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - chr4_2:15613486-15613505 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - chr4_2:15613538-15613557 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + chr4_2:15613683-15613702 Msa0591350:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + chr4_2:15613730-15613749 Msa0591350:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + chr4_2:15614065-15614084 Msa0591350:CDS 35.0%
AGAACTAAGGCAAGATGAGA+TGG + chr4_2:15611789-15611808 Msa0591350:CDS 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - chr4_2:15611820-15611839 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - chr4_2:15611835-15611854 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + chr4_2:15611840-15611859 Msa0591350:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - chr4_2:15611847-15611866 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - chr4_2:15611936-15611955 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - chr4_2:15612056-15612075 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - chr4_2:15612110-15612129 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - chr4_2:15612114-15612133 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - chr4_2:15612235-15612254 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + chr4_2:15612234-15612253 Msa0591350:intron 40.0%
AGCGGGTATCTTTCACAAAA+AGG + chr4_2:15612568-15612587 Msa0591350:CDS 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - chr4_2:15612597-15612616 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - chr4_2:15612618-15612637 None:intergenic 40.0%
!!! TCTCGTTATTTTTAGGGGGA+AGG + chr4_2:15612813-15612832 Msa0591350:intron 40.0%
!!! TTATTTTTAGGGGGAAGGAG+TGG + chr4_2:15612818-15612837 Msa0591350:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - chr4_2:15612972-15612991 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - chr4_2:15612983-15613002 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - chr4_2:15612993-15613012 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - chr4_2:15613023-15613042 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + chr4_2:15613037-15613056 Msa0591350:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + chr4_2:15613079-15613098 Msa0591350:intron 40.0%
ACAATGTGATATCTCACACC+AGG - chr4_2:15613121-15613140 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + chr4_2:15613124-15613143 Msa0591350:CDS 40.0%
GCTTGACGTAAAACAGATAG+TGG - chr4_2:15613447-15613466 None:intergenic 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + chr4_2:15613495-15613514 Msa0591350:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + chr4_2:15613525-15613544 Msa0591350:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - chr4_2:15613537-15613556 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + chr4_2:15613537-15613556 Msa0591350:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + chr4_2:15613567-15613586 Msa0591350:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - chr4_2:15613599-15613618 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + chr4_2:15613599-15613618 Msa0591350:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - chr4_2:15613609-15613628 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - chr4_2:15613640-15613659 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + chr4_2:15613640-15613659 Msa0591350:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - chr4_2:15613676-15613695 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - chr4_2:15613745-15613764 None:intergenic 40.0%
ATGGCTCAACTAAGCACTTT+GGG + chr4_2:15613874-15613893 Msa0591350:intron 40.0%
AGAACTAAGGCAAGATGAGA+TGG + chr4_2:15611789-15611808 Msa0591350:CDS 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - chr4_2:15611820-15611839 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - chr4_2:15611835-15611854 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + chr4_2:15611840-15611859 Msa0591350:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - chr4_2:15611847-15611866 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - chr4_2:15611936-15611955 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - chr4_2:15612056-15612075 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - chr4_2:15612110-15612129 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - chr4_2:15612114-15612133 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - chr4_2:15612235-15612254 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + chr4_2:15612234-15612253 Msa0591350:intron 40.0%
AGCGGGTATCTTTCACAAAA+AGG + chr4_2:15612568-15612587 Msa0591350:CDS 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - chr4_2:15612597-15612616 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - chr4_2:15612618-15612637 None:intergenic 40.0%
!!! TCTCGTTATTTTTAGGGGGA+AGG + chr4_2:15612813-15612832 Msa0591350:intron 40.0%
!!! TTATTTTTAGGGGGAAGGAG+TGG + chr4_2:15612818-15612837 Msa0591350:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - chr4_2:15612972-15612991 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - chr4_2:15612983-15613002 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - chr4_2:15612993-15613012 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - chr4_2:15613023-15613042 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + chr4_2:15613037-15613056 Msa0591350:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + chr4_2:15613079-15613098 Msa0591350:intron 40.0%
ACAATGTGATATCTCACACC+AGG - chr4_2:15613121-15613140 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + chr4_2:15613124-15613143 Msa0591350:CDS 40.0%
GCTTGACGTAAAACAGATAG+TGG - chr4_2:15613447-15613466 None:intergenic 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + chr4_2:15613495-15613514 Msa0591350:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + chr4_2:15613525-15613544 Msa0591350:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - chr4_2:15613537-15613556 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + chr4_2:15613537-15613556 Msa0591350:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + chr4_2:15613567-15613586 Msa0591350:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - chr4_2:15613599-15613618 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + chr4_2:15613599-15613618 Msa0591350:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - chr4_2:15613609-15613628 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - chr4_2:15613640-15613659 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + chr4_2:15613640-15613659 Msa0591350:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - chr4_2:15613676-15613695 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - chr4_2:15613745-15613764 None:intergenic 40.0%
ATGGCTCAACTAAGCACTTT+GGG + chr4_2:15613874-15613893 Msa0591350:intron 40.0%
GATCGTTGGCACAAGAAAGA+AGG - chr4_2:15611821-15611840 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - chr4_2:15611935-15611954 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + chr4_2:15612148-15612167 Msa0591350:intron 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + chr4_2:15612152-15612171 Msa0591350:intron 45.0%
GTACCATCCTAAAAGCAAGG+AGG - chr4_2:15612158-15612177 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - chr4_2:15612206-15612225 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - chr4_2:15612207-15612226 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - chr4_2:15612208-15612227 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + chr4_2:15612207-15612226 Msa0591350:intron 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + chr4_2:15612672-15612691 Msa0591350:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + chr4_2:15612835-15612854 Msa0591350:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + chr4_2:15612908-15612927 Msa0591350:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + chr4_2:15613083-15613102 Msa0591350:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + chr4_2:15613084-15613103 Msa0591350:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + chr4_2:15613100-15613119 Msa0591350:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - chr4_2:15613152-15613171 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + chr4_2:15613258-15613277 Msa0591350:intron 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + chr4_2:15613559-15613578 Msa0591350:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - chr4_2:15613574-15613593 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - chr4_2:15613598-15613617 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + chr4_2:15613639-15613658 Msa0591350:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + chr4_2:15613689-15613708 Msa0591350:CDS 45.0%
GATGGCTCAACTAAGCACTT+TGG + chr4_2:15613873-15613892 Msa0591350:intron 45.0%
TGGCTCAACTAAGCACTTTG+GGG + chr4_2:15613875-15613894 Msa0591350:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - chr4_2:15614199-15614218 None:intergenic 45.0%
GATCGTTGGCACAAGAAAGA+AGG - chr4_2:15611821-15611840 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - chr4_2:15611935-15611954 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + chr4_2:15612148-15612167 Msa0591350:intron 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + chr4_2:15612152-15612171 Msa0591350:intron 45.0%
GTACCATCCTAAAAGCAAGG+AGG - chr4_2:15612158-15612177 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - chr4_2:15612206-15612225 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - chr4_2:15612207-15612226 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - chr4_2:15612208-15612227 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + chr4_2:15612207-15612226 Msa0591350:intron 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + chr4_2:15612672-15612691 Msa0591350:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + chr4_2:15612835-15612854 Msa0591350:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + chr4_2:15612908-15612927 Msa0591350:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + chr4_2:15613083-15613102 Msa0591350:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + chr4_2:15613084-15613103 Msa0591350:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + chr4_2:15613100-15613119 Msa0591350:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - chr4_2:15613152-15613171 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + chr4_2:15613258-15613277 Msa0591350:intron 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + chr4_2:15613559-15613578 Msa0591350:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - chr4_2:15613574-15613593 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - chr4_2:15613598-15613617 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + chr4_2:15613639-15613658 Msa0591350:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + chr4_2:15613689-15613708 Msa0591350:CDS 45.0%
GATGGCTCAACTAAGCACTT+TGG + chr4_2:15613873-15613892 Msa0591350:intron 45.0%
TGGCTCAACTAAGCACTTTG+GGG + chr4_2:15613875-15613894 Msa0591350:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - chr4_2:15614199-15614218 None:intergenic 45.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - chr4_2:15611934-15611953 None:intergenic 50.0%
AGATACCCGCTTTCGTGCTT+TGG - chr4_2:15612559-15612578 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + chr4_2:15612600-15612619 Msa0591350:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + chr4_2:15612877-15612896 Msa0591350:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + chr4_2:15612916-15612935 Msa0591350:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - chr4_2:15613008-15613027 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + chr4_2:15613090-15613109 Msa0591350:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - chr4_2:15613153-15613172 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + chr4_2:15613150-15613169 Msa0591350:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + chr4_2:15613163-15613182 Msa0591350:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - chr4_2:15613262-15613281 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - chr4_2:15613553-15613572 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - chr4_2:15613658-15613677 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + chr4_2:15613665-15613684 Msa0591350:CDS 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - chr4_2:15611934-15611953 None:intergenic 50.0%
AGATACCCGCTTTCGTGCTT+TGG - chr4_2:15612559-15612578 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + chr4_2:15612600-15612619 Msa0591350:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + chr4_2:15612877-15612896 Msa0591350:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + chr4_2:15612916-15612935 Msa0591350:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - chr4_2:15613008-15613027 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + chr4_2:15613090-15613109 Msa0591350:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - chr4_2:15613153-15613172 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + chr4_2:15613150-15613169 Msa0591350:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + chr4_2:15613163-15613182 Msa0591350:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - chr4_2:15613262-15613281 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - chr4_2:15613553-15613572 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - chr4_2:15613658-15613677 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + chr4_2:15613665-15613684 Msa0591350:CDS 50.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - chr4_2:15611932-15611951 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - chr4_2:15611933-15611952 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + chr4_2:15612550-15612569 Msa0591350:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + chr4_2:15612551-15612570 Msa0591350:CDS 55.0%
ACCCGCTTTCGTGCTTTGGT+GGG - chr4_2:15612555-15612574 None:intergenic 55.0%
TACCCGCTTTCGTGCTTTGG+TGG - chr4_2:15612556-15612575 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + chr4_2:15613004-15613023 Msa0591350:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + chr4_2:15613142-15613161 Msa0591350:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - chr4_2:15613263-15613282 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + chr4_2:15613263-15613282 Msa0591350:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + chr4_2:15613645-15613664 Msa0591350:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + chr4_2:15614180-15614199 Msa0591350:CDS 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - chr4_2:15611932-15611951 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - chr4_2:15611933-15611952 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + chr4_2:15612550-15612569 Msa0591350:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + chr4_2:15612551-15612570 Msa0591350:CDS 55.0%
ACCCGCTTTCGTGCTTTGGT+GGG - chr4_2:15612555-15612574 None:intergenic 55.0%
TACCCGCTTTCGTGCTTTGG+TGG - chr4_2:15612556-15612575 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + chr4_2:15613004-15613023 Msa0591350:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + chr4_2:15613142-15613161 Msa0591350:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - chr4_2:15613263-15613282 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + chr4_2:15613263-15613282 Msa0591350:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + chr4_2:15613645-15613664 Msa0591350:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + chr4_2:15614180-15614199 Msa0591350:CDS 55.0%
!!! TTTTTCAGGGTCTCGGGGGG+GGG - chr4_2:15611931-15611950 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - chr4_2:15612184-15612203 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - chr4_2:15612201-15612220 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + chr4_2:15612199-15612218 Msa0591350:intron 60.0%
!!! TTTTTCAGGGTCTCGGGGGG+GGG - chr4_2:15611931-15611950 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - chr4_2:15612184-15612203 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - chr4_2:15612201-15612220 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + chr4_2:15612199-15612218 Msa0591350:intron 60.0%
!! TTTTCAGGGTCTCGGGGGGG+GGG - chr4_2:15611930-15611949 None:intergenic 65.0%
TCGCTGTGGGGCGAGGAGAA+AGG - chr4_2:15612194-15612213 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + chr4_2:15613588-15613607 Msa0591350:intron 65.0%
!! TTTTCAGGGTCTCGGGGGGG+GGG - chr4_2:15611930-15611949 None:intergenic 65.0%
TCGCTGTGGGGCGAGGAGAA+AGG - chr4_2:15612194-15612213 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + chr4_2:15613588-15613607 Msa0591350:intron 65.0%
TTTCAGGGTCTCGGGGGGGG+GGG - chr4_2:15611929-15611948 None:intergenic 70.0%
TTTCAGGGTCTCGGGGGGGG+GGG - chr4_2:15611929-15611948 None:intergenic 70.0%
TTCAGGGTCTCGGGGGGGGG+GGG - chr4_2:15611928-15611947 None:intergenic 75.0%
TTCAGGGTCTCGGGGGGGGG+GGG - chr4_2:15611928-15611947 None:intergenic 75.0%
! TCAGGGTCTCGGGGGGGGGG+GGG - chr4_2:15611927-15611946 None:intergenic 80.0%
! TCAGGGTCTCGGGGGGGGGG+GGG - chr4_2:15611927-15611946 None:intergenic 80.0%
! AGGGTCTCGGGGGGGGGGGG+GGG - chr4_2:15611925-15611944 None:intergenic 85.0%
! CAGGGTCTCGGGGGGGGGGG+GGG - chr4_2:15611926-15611945 None:intergenic 85.0%
! AGGGTCTCGGGGGGGGGGGG+GGG - chr4_2:15611925-15611944 None:intergenic 85.0%
! CAGGGTCTCGGGGGGGGGGG+GGG - chr4_2:15611926-15611945 None:intergenic 85.0%
! TCTCGGGGGGGGGGGGGGGG+GGG - chr4_2:15611921-15611940 None:intergenic 90.0%
! GTCTCGGGGGGGGGGGGGGG+GGG - chr4_2:15611922-15611941 None:intergenic 90.0%
! GGTCTCGGGGGGGGGGGGGG+GGG - chr4_2:15611923-15611942 None:intergenic 90.0%
! GGGTCTCGGGGGGGGGGGGG+GGG - chr4_2:15611924-15611943 None:intergenic 90.0%
! TCTCGGGGGGGGGGGGGGGG+GGG - chr4_2:15611921-15611940 None:intergenic 90.0%
! GTCTCGGGGGGGGGGGGGGG+GGG - chr4_2:15611922-15611941 None:intergenic 90.0%
! GGTCTCGGGGGGGGGGGGGG+GGG - chr4_2:15611923-15611942 None:intergenic 90.0%
! GGGTCTCGGGGGGGGGGGGG+GGG - chr4_2:15611924-15611943 None:intergenic 90.0%
! TCGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611919-15611938 None:intergenic 95.0%
! CTCGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611920-15611939 None:intergenic 95.0%
! TCGGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611919-15611938 None:intergenic 95.0%
! CTCGGGGGGGGGGGGGGGGG+GGG - chr4_2:15611920-15611939 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 15611778 15614220 15611778 ID=Msa0591350;Name=Msa0591350
chr4_2 mRNA 15611778 15614220 15611778 ID=Msa0591350-mRNA-1;Parent=Msa0591350;Name=Msa0591350-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|0|0.16|6|0|275
chr4_2 exon 15611778 15611854 15611778 ID=Msa0591350-mRNA-1:exon:4470;Parent=Msa0591350-mRNA-1
chr4_2 exon 15612530 15612606 15612530 ID=Msa0591350-mRNA-1:exon:4471;Parent=Msa0591350-mRNA-1
chr4_2 exon 15613092 15613184 15613092 ID=Msa0591350-mRNA-1:exon:4472;Parent=Msa0591350-mRNA-1
chr4_2 exon 15613340 15613576 15613340 ID=Msa0591350-mRNA-1:exon:4473;Parent=Msa0591350-mRNA-1
chr4_2 exon 15613589 15613735 15613589 ID=Msa0591350-mRNA-1:exon:4474;Parent=Msa0591350-mRNA-1
chr4_2 exon 15614027 15614220 15614027 ID=Msa0591350-mRNA-1:exon:4475;Parent=Msa0591350-mRNA-1
chr4_2 CDS 15611778 15611854 15611778 ID=Msa0591350-mRNA-1:cds;Parent=Msa0591350-mRNA-1
chr4_2 CDS 15612530 15612606 15612530 ID=Msa0591350-mRNA-1:cds;Parent=Msa0591350-mRNA-1
chr4_2 CDS 15613092 15613184 15613092 ID=Msa0591350-mRNA-1:cds;Parent=Msa0591350-mRNA-1
chr4_2 CDS 15613340 15613576 15613340 ID=Msa0591350-mRNA-1:cds;Parent=Msa0591350-mRNA-1
chr4_2 CDS 15613589 15613735 15613589 ID=Msa0591350-mRNA-1:cds;Parent=Msa0591350-mRNA-1
chr4_2 CDS 15614027 15614220 15614027 ID=Msa0591350-mRNA-1:cds;Parent=Msa0591350-mRNA-1
Gene Sequence

>Msa0591350

ATGGATAAATCAGAACTAAGGCAAGATGAGATGGATGAACCCTTCTTTCTTGTGCCAACGATCTTACCATTTGCGAAGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGTATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACATGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa0591350

MDKSELRQDEMDEPFFLVPTILPFAKSSKASRRPTKARKRVSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIHGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI