AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354550 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354550 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354550 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1354550 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354550 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354550 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1354550 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1354550 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1354550 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1354550 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354550 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1354550 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1354550 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1354550 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1354550 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1354550 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0014543:-376807 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0014543:+378994 Msa1354550:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0014543:+378040 Msa1354550:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0014543:+379068 Msa1354550:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0014543:+377686 Msa1354550:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0014543:-378028 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0014543:+379095 Msa1354550:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0014543:+376870 Msa1354550:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0014543:+379134 Msa1354550:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0014543:-378620 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0014543:+378057 Msa1354550:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0014543:-379106 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0014543:-378920 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0014543:-378647 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0014543:-378913 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0014543:-376806 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0014543:+378964 Msa1354550:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0014543:-379124 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0014543:-378025 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0014543:-378066 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0014543:-378024 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0014543:+378023 Msa1354550:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0014543:-376846 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0014543:-376825 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0014543:-379003 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0014543:-376834 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0014543:-377678 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0014543:-378619 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0014543:+378620 Msa1354550:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0014543:+378866 Msa1354550:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0014543:+376774 Msa1354550:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0014543:-376854 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0014543:+378022 Msa1354550:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0014543:+379114 Msa1354550:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0014543:+378798 Msa1354550:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0014543:+379057 Msa1354550:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0014543:+379152 Msa1354550:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0014543:-379004 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0014543:-376862 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0014543:-379497 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0014543:+378547 Msa1354550:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0014543:-379666 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 tig0014543:+379650 Msa1354550:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0014543:+379109 Msa1354550:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0014543:+376775 Msa1354550:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0014543:+379108 Msa1354550:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0014543:+378594 Msa1354550:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0014543:+377694 Msa1354550:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0014543:+378548 Msa1354550:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0014543:+379158 Msa1354550:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0014543:+378633 Msa1354550:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0014543:-376847 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0014543:-379075 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0014543:-376804 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0014543:+378612 Msa1354550:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0014543:-377668 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0014543:+378024 Msa1354550:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0014543:-376805 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0014543:-376831 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0014543:-377645 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0014543:+378570 Msa1354550:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 tig0014543:+379633 Msa1354550:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0014543:+378820 Msa1354550:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0014543:+378549 Msa1354550:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0014543:-376803 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0014543:-376845 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0014543:-378588 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0014543:+378924 Msa1354550:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0014543:+379006 Msa1354550:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0014543:-377642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0014543:377057-377076 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0014543:377066-377085 Msa1354550:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0014543:377432-377451 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - tig0014543:377433-377452 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + tig0014543:377436-377455 Msa1354550:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0014543:377067-377086 Msa1354550:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0014543:377872-377891 Msa1354550:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0014543:378703-378722 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0014543:378704-378723 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0014543:378705-378724 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0014543:379379-379398 Msa1354550:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0014543:376809-376828 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0014543:376810-376829 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0014543:377119-377138 Msa1354550:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0014543:377269-377288 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0014543:377269-377288 Msa1354550:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0014543:377614-377633 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0014543:378233-378252 Msa1354550:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0014543:378278-378297 Msa1354550:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0014543:378701-378720 Msa1354550:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0014543:379276-379295 Msa1354550:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0014543:379370-379389 Msa1354550:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0014543:379390-379409 Msa1354550:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0014543:376808-376827 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - tig0014543:376998-377017 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - tig0014543:376999-377018 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - tig0014543:377000-377019 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0014543:377109-377128 Msa1354550:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0014543:377125-377144 Msa1354550:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0014543:377174-377193 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0014543:377220-377239 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0014543:377268-377287 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0014543:377286-377305 Msa1354550:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0014543:377391-377410 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0014543:377392-377411 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0014543:377512-377531 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0014543:377513-377532 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0014543:377514-377533 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0014543:377615-377634 Msa1354550:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0014543:377620-377639 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0014543:377757-377776 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0014543:377980-377999 Msa1354550:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0014543:378056-378075 Msa1354550:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0014543:378057-378076 Msa1354550:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0014543:378124-378143 Msa1354550:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0014543:378134-378153 Msa1354550:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0014543:378197-378216 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0014543:378279-378298 Msa1354550:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0014543:378333-378352 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0014543:378533-378552 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0014543:378684-378703 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0014543:378790-378809 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0014543:378798-378817 Msa1354550:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0014543:378828-378847 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0014543:379262-379281 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0014543:379549-379568 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + tig0014543:379633-379652 Msa1354550:CDS 25.0%
GACCATATAATATTTATGGG+GGG - tig0014543:376806-376825 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0014543:376807-376826 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0014543:376890-376909 Msa1354550:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0014543:376891-376910 Msa1354550:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0014543:377169-377188 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0014543:377169-377188 Msa1354550:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0014543:377219-377238 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0014543:377221-377240 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0014543:377386-377405 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0014543:377426-377445 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0014543:377480-377499 Msa1354550:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0014543:377557-377576 Msa1354550:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0014543:378113-378132 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0014543:378114-378133 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0014543:378112-378131 Msa1354550:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0014543:378129-378148 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0014543:378127-378146 Msa1354550:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0014543:378133-378152 Msa1354550:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0014543:378523-378542 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0014543:378547-378566 Msa1354550:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0014543:378649-378668 Msa1354550:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0014543:378776-378795 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0014543:378785-378804 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0014543:378820-378839 Msa1354550:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0014543:378834-378853 Msa1354550:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0014543:378866-378885 Msa1354550:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0014543:378956-378975 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0014543:379095-379114 Msa1354550:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0014543:379234-379253 Msa1354550:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0014543:379244-379263 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0014543:379250-379269 Msa1354550:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0014543:379324-379343 Msa1354550:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0014543:379500-379519 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0014543:379499-379518 Msa1354550:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0014543:379516-379535 Msa1354550:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0014543:379538-379557 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0014543:379590-379609 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0014543:379590-379609 Msa1354550:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0014543:376801-376820 Msa1354550:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0014543:376870-376889 Msa1354550:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0014543:376897-376916 Msa1354550:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0014543:376898-376917 Msa1354550:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0014543:377016-377035 Msa1354550:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0014543:377093-377112 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0014543:377425-377444 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0014543:377544-377563 Msa1354550:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0014543:377550-377569 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0014543:377648-377667 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0014543:377911-377930 Msa1354550:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0014543:377939-377958 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0014543:378111-378130 Msa1354550:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0014543:378335-378354 Msa1354550:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0014543:378363-378382 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0014543:378365-378384 Msa1354550:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0014543:378433-378452 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0014543:378443-378462 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0014543:378444-378463 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0014543:378501-378520 Msa1354550:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0014543:378522-378541 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0014543:378546-378565 Msa1354550:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0014543:378548-378567 Msa1354550:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0014543:378650-378669 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0014543:378648-378667 Msa1354550:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0014543:378650-378669 Msa1354550:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0014543:378923-378942 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0014543:378923-378942 Msa1354550:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0014543:378955-378974 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0014543:379007-379026 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0014543:379152-379171 Msa1354550:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0014543:379199-379218 Msa1354550:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0014543:379535-379554 Msa1354550:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - tig0014543:376992-377011 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0014543:377028-377047 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0014543:377299-377318 Msa1354550:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0014543:377330-377349 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0014543:377345-377364 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0014543:377350-377369 Msa1354550:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0014543:377357-377376 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0014543:377424-377443 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0014543:377543-377562 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0014543:377597-377616 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0014543:377601-377620 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0014543:377722-377741 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0014543:377721-377740 Msa1354550:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0014543:378069-378088 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0014543:378090-378109 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0014543:378283-378302 Msa1354550:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0014543:378442-378461 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0014543:378453-378472 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0014543:378463-378482 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0014543:378493-378512 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0014543:378507-378526 Msa1354550:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0014543:378549-378568 Msa1354550:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0014543:378591-378610 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0014543:378594-378613 Msa1354550:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0014543:378922-378941 Msa1354550:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0014543:378924-378943 Msa1354550:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0014543:378964-378983 Msa1354550:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0014543:378994-379013 Msa1354550:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0014543:379006-379025 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0014543:379006-379025 Msa1354550:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0014543:379036-379055 Msa1354550:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0014543:379068-379087 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0014543:379068-379087 Msa1354550:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0014543:379078-379097 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0014543:379109-379128 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0014543:379109-379128 Msa1354550:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0014543:379145-379164 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0014543:379214-379233 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0014543:379343-379362 Msa1354550:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0014543:379344-379363 Msa1354550:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0014543:376774-376793 Msa1354550:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0014543:376828-376847 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0014543:376848-376867 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0014543:376849-376868 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0014543:376857-376876 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0014543:376865-376884 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0014543:377158-377177 Msa1354550:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0014543:377331-377350 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0014543:377423-377442 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0014543:377635-377654 Msa1354550:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0014543:377639-377658 Msa1354550:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0014543:377645-377664 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0014543:377693-377712 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0014543:377694-377713 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0014543:377695-377714 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0014543:377694-377713 Msa1354550:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0014543:378040-378059 Msa1354550:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0014543:378144-378163 Msa1354550:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0014543:378288-378307 Msa1354550:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0014543:378305-378324 Msa1354550:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0014543:378378-378397 Msa1354550:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0014543:378553-378572 Msa1354550:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0014543:378554-378573 Msa1354550:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0014543:378570-378589 Msa1354550:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0014543:378622-378641 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0014543:378728-378747 Msa1354550:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0014543:378916-378935 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0014543:379028-379047 Msa1354550:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0014543:379043-379062 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0014543:379067-379086 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0014543:379108-379127 Msa1354550:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0014543:379158-379177 Msa1354550:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0014543:379345-379364 Msa1354550:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0014543:379669-379688 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0014543:376775-376794 Msa1354550:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0014543:376796-376815 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0014543:376834-376853 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0014543:376837-376856 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0014543:376850-376869 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0014543:376937-376956 Msa1354550:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0014543:376973-376992 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0014543:377422-377441 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0014543:378072-378091 Msa1354550:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0014543:378347-378366 Msa1354550:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0014543:378386-378405 Msa1354550:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0014543:378478-378497 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0014543:378560-378579 Msa1354550:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0014543:378623-378642 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0014543:378620-378639 Msa1354550:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0014543:378633-378652 Msa1354550:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0014543:378732-378751 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0014543:379022-379041 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0014543:379127-379146 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0014543:379134-379153 Msa1354550:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0014543:376949-376968 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0014543:376952-376971 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - tig0014543:376987-377006 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - tig0014543:376988-377007 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - tig0014543:377420-377439 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0014543:377421-377440 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0014543:378022-378041 Msa1354550:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0014543:378023-378042 Msa1354550:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0014543:378031-378050 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0014543:378474-378493 Msa1354550:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0014543:378612-378631 Msa1354550:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0014543:378733-378752 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0014543:378733-378752 Msa1354550:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0014543:379114-379133 Msa1354550:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + tig0014543:379650-379669 Msa1354550:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - tig0014543:376986-377005 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0014543:377671-377690 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0014543:377688-377707 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0014543:377686-377705 Msa1354550:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0014543:378027-378046 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0014543:378024-378043 Msa1354550:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0014543:378028-378047 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0014543:377681-377700 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0014543:379057-379076 Msa1354550:intron 65.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 376760 379690 376760 ID=Msa1354550;Name=Msa1354550
tig0014543 mRNA 376760 379690 376760 ID=Msa1354550-mRNA-1;Parent=Msa1354550;Name=Msa1354550-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
tig0014543 exon 376760 376912 376760 ID=Msa1354550-mRNA-1:exon:9151;Parent=Msa1354550-mRNA-1
tig0014543 exon 377635 377724 377635 ID=Msa1354550-mRNA-1:exon:9152;Parent=Msa1354550-mRNA-1
tig0014543 exon 377985 378078 377985 ID=Msa1354550-mRNA-1:exon:9153;Parent=Msa1354550-mRNA-1
tig0014543 exon 378562 378654 378562 ID=Msa1354550-mRNA-1:exon:9154;Parent=Msa1354550-mRNA-1
tig0014543 exon 378809 379045 378809 ID=Msa1354550-mRNA-1:exon:9155;Parent=Msa1354550-mRNA-1
tig0014543 exon 379058 379204 379058 ID=Msa1354550-mRNA-1:exon:9156;Parent=Msa1354550-mRNA-1
tig0014543 exon 379497 379690 379497 ID=Msa1354550-mRNA-1:exon:9157;Parent=Msa1354550-mRNA-1
tig0014543 CDS 376760 376912 376760 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
tig0014543 CDS 377635 377724 377635 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
tig0014543 CDS 377985 378078 377985 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
tig0014543 CDS 378562 378654 378562 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
tig0014543 CDS 378809 379045 378809 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
tig0014543 CDS 379058 379204 379058 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
tig0014543 CDS 379497 379690 379497 ID=Msa1354550-mRNA-1:cds;Parent=Msa1354550-mRNA-1
Gene Sequence

>Msa1354550

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1354550

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI