Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460130 | AWW91837.1 | 100.000 | 178 | 0 | 0 | 1 | 178 | 106 | 283 | 6.22e-126 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460130 | sp|P0CC48|NU2C1_COFAR | 94.675 | 169 | 9 | 0 | 1 | 169 | 124 | 292 | 1.25e-109 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460130 | A0A2Z4KH50 | 100.000 | 178 | 0 | 0 | 1 | 178 | 106 | 283 | 2.97e-126 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095190 | Msa1460130 | 0.804615 | 1.984300e-49 | -8.615850e-47 |
| Msa1354420 | Msa1460130 | 0.845736 | 3.371358e-59 | -8.615850e-47 |
| Msa1354430 | Msa1460130 | 0.882025 | 1.472449e-70 | -8.615850e-47 |
| Msa1354480 | Msa1460130 | 0.844378 | 7.845074e-59 | -8.615850e-47 |
| Msa1354490 | Msa1460130 | 0.847894 | 8.659978e-60 | -8.615850e-47 |
| Msa1354500 | Msa1460130 | 0.863656 | 2.131156e-64 | -8.615850e-47 |
| Msa1354550 | Msa1460130 | 0.846013 | 2.835871e-59 | -8.615850e-47 |
| Msa1354560 | Msa1460130 | 0.843383 | 1.449472e-58 | -8.615850e-47 |
| Msa1354610 | Msa1460130 | 0.857218 | 1.895315e-62 | -8.615850e-47 |
| Msa1354620 | Msa1460130 | 0.851510 | 8.468226e-61 | -8.615850e-47 |
| Msa1354630 | Msa1460130 | 0.872895 | 2.236896e-67 | -8.615850e-47 |
| Msa1354680 | Msa1460130 | 0.837417 | 5.263428e-57 | -8.615850e-47 |
| Msa1354690 | Msa1460130 | 0.862511 | 4.811406e-64 | -8.615850e-47 |
| Msa1354700 | Msa1460130 | 0.838011 | 3.704997e-57 | -8.615850e-47 |
| Msa1354740 | Msa1460130 | 0.853560 | 2.205032e-61 | -8.615850e-47 |
| Msa1354750 | Msa1460130 | 0.857368 | 1.711381e-62 | -8.615850e-47 |
| Msa1354760 | Msa1460130 | 0.855191 | 7.443830e-62 | -8.615850e-47 |
| Msa1354810 | Msa1460130 | 0.853531 | 2.246520e-61 | -8.615850e-47 |
| Msa1354820 | Msa1460130 | 0.888078 | 8.122181e-73 | -8.615850e-47 |
| Msa1354910 | Msa1460130 | 0.801188 | 1.013116e-48 | -8.615850e-47 |
| Msa1354930 | Msa1460130 | 0.802559 | 5.296659e-49 | -8.615850e-47 |
| Msa1354980 | Msa1460130 | 0.848495 | 5.910010e-60 | -8.615850e-47 |
| Msa1354990 | Msa1460130 | 0.862987 | 3.432972e-64 | -8.615850e-47 |
| Msa1355080 | Msa1460130 | 0.825192 | 5.360109e-54 | -8.615850e-47 |
| Msa1355090 | Msa1460130 | 0.802168 | 6.375597e-49 | -8.615850e-47 |
| Msa1365890 | Msa1460130 | 0.862951 | 3.521272e-64 | -8.615850e-47 |
| Msa1365900 | Msa1460130 | 0.836829 | 7.438345e-57 | -8.615850e-47 |
| Msa1365950 | Msa1460130 | 0.885125 | 1.064784e-71 | -8.615850e-47 |
| Msa1365960 | Msa1460130 | 0.845795 | 3.250515e-59 | -8.615850e-47 |
| Msa1365970 | Msa1460130 | 0.846009 | 2.842479e-59 | -8.615850e-47 |
| Msa1366080 | Msa1460130 | 0.858056 | 1.070345e-62 | -8.615850e-47 |
| Msa1366090 | Msa1460130 | 0.833031 | 6.734183e-56 | -8.615850e-47 |
| Msa1368230 | Msa1460130 | 0.860799 | 1.605886e-63 | -8.615850e-47 |
| Msa1368240 | Msa1460130 | 0.850143 | 2.054835e-60 | -8.615850e-47 |
| Msa1380600 | Msa1460130 | 0.806333 | 8.657020e-50 | -8.615850e-47 |
| Msa1380620 | Msa1460130 | 0.809926 | 1.486136e-50 | -8.615850e-47 |
| Msa1385410 | Msa1460130 | 0.852627 | 4.076865e-61 | -8.615850e-47 |
| Msa1385420 | Msa1460130 | 0.818431 | 1.967771e-52 | -8.615850e-47 |
| Msa1391090 | Msa1460130 | 0.872037 | 4.326739e-67 | -8.615850e-47 |
| Msa1391100 | Msa1460130 | 0.839029 | 2.023320e-57 | -8.615850e-47 |
| Msa1391110 | Msa1460130 | 0.855586 | 5.713100e-62 | -8.615850e-47 |
| Msa1391160 | Msa1460130 | 0.826565 | 2.529959e-54 | -8.615850e-47 |
| Msa1391170 | Msa1460130 | 0.877353 | 6.727038e-69 | -8.615850e-47 |
| Msa1391220 | Msa1460130 | 0.847778 | 9.326105e-60 | -8.615850e-47 |
| Msa1391230 | Msa1460130 | 0.846488 | 2.104748e-59 | -8.615850e-47 |
| Msa1391240 | Msa1460130 | 0.858314 | 8.969484e-63 | -8.615850e-47 |
| Msa1394040 | Msa1460130 | 0.813963 | 1.961102e-51 | -8.615850e-47 |
| Msa1394150 | Msa1460130 | 0.807815 | 4.203675e-50 | -8.615850e-47 |
| Msa1394210 | Msa1460130 | 0.812583 | 3.941163e-51 | -8.615850e-47 |
| Msa1394220 | Msa1460130 | 0.821225 | 4.520850e-53 | -8.615850e-47 |
| Msa1460120 | Msa1460130 | 0.874950 | 4.522461e-68 | -8.615850e-47 |
| Msa0202640 | Msa1460130 | 0.810465 | 1.137048e-50 | -8.615850e-47 |
| Msa1305090 | Msa1460130 | 0.831656 | 1.475027e-55 | -8.615850e-47 |
| Msa1342040 | Msa1460130 | 0.837329 | 5.544458e-57 | -8.615850e-47 |
| Msa0370210 | Msa1460130 | 0.818111 | 2.324785e-52 | -8.615850e-47 |
| Msa0405420 | Msa1460130 | 0.912626 | 1.569774e-83 | -8.615850e-47 |
| Msa0405430 | Msa1460130 | 0.866354 | 3.031578e-65 | -8.615850e-47 |
| Msa0405440 | Msa1460130 | 0.873770 | 1.136752e-67 | -8.615850e-47 |
| Msa0405510 | Msa1460130 | 0.910887 | 1.132796e-82 | -8.615850e-47 |
| Msa0405520 | Msa1460130 | 0.866842 | 2.120558e-65 | -8.615850e-47 |
| Msa0405530 | Msa1460130 | 0.856136 | 3.943929e-62 | -8.615850e-47 |
| Msa0983630 | Msa1460130 | 0.839444 | 1.578873e-57 | -8.615850e-47 |
| Msa0983640 | Msa1460130 | 0.856417 | 3.262148e-62 | -8.615850e-47 |
| Msa1022050 | Msa1460130 | 0.833533 | 5.049182e-56 | -8.615850e-47 |
| Msa1022060 | Msa1460130 | 0.829895 | 3.985511e-55 | -8.615850e-47 |
| Msa1064410 | Msa1460130 | 0.833004 | 6.839310e-56 | -8.615850e-47 |
| Msa1086070 | Msa1460130 | 0.806577 | 7.689053e-50 | -8.615850e-47 |
| Msa1086080 | Msa1460130 | 0.814704 | 1.345464e-51 | -8.615850e-47 |
| Msa1086140 | Msa1460130 | 0.813803 | 2.126947e-51 | -8.615850e-47 |
| Msa1086180 | Msa1460130 | 0.801190 | 1.011826e-48 | -8.615850e-47 |
| Msa1086190 | Msa1460130 | 0.828649 | 7.993330e-55 | -8.615850e-47 |
| Msa1086270 | Msa1460130 | 0.826787 | 2.239965e-54 | -8.615850e-47 |
| Msa1086470 | Msa1460130 | 0.802159 | 6.403401e-49 | -8.615850e-47 |
| Msa1086550 | Msa1460130 | 0.855185 | 7.476906e-62 | -8.615850e-47 |
| Msa1086590 | Msa1460130 | 0.824721 | 6.921746e-54 | -8.615850e-47 |
| Msa1086600 | Msa1460130 | 0.868127 | 8.222885e-66 | -8.615850e-47 |
| Msa1086720 | Msa1460130 | 0.852867 | 3.482672e-61 | -8.615850e-47 |
| Msa1086730 | Msa1460130 | 0.839970 | 1.151971e-57 | -8.615850e-47 |
| Msa1086740 | Msa1460130 | 0.870586 | 1.305163e-66 | -8.615850e-47 |
| Msa1086790 | Msa1460130 | 0.852454 | 4.569139e-61 | -8.615850e-47 |
| Msa1086800 | Msa1460130 | 0.878434 | 2.816967e-69 | -8.615850e-47 |
| Msa1086880 | Msa1460130 | 0.806160 | 9.411914e-50 | -8.615850e-47 |
| Msa1086890 | Msa1460130 | 0.803785 | 2.953946e-49 | -8.615850e-47 |
| Msa1086960 | Msa1460130 | 0.859135 | 5.100035e-63 | -8.615850e-47 |
| Msa1086970 | Msa1460130 | 0.836507 | 8.986491e-57 | -8.615850e-47 |
| Msa1087030 | Msa1460130 | 0.841160 | 5.622387e-58 | -8.615850e-47 |
| Msa1087040 | Msa1460130 | 0.854348 | 1.307114e-61 | -8.615850e-47 |
| Msa1087050 | Msa1460130 | 0.860368 | 2.169040e-63 | -8.615850e-47 |
| Msa1087110 | Msa1460130 | 0.854786 | 9.757365e-62 | -8.615850e-47 |
| Msa1087120 | Msa1460130 | 0.850175 | 2.012925e-60 | -8.615850e-47 |
| Msa1098570 | Msa1460130 | 0.811922 | 5.493931e-51 | -8.615850e-47 |
| Msa0263770 | Msa1460130 | 0.863254 | 2.838362e-64 | -8.615850e-47 |
| Msa0268170 | Msa1460130 | 0.802842 | 4.631497e-49 | -8.615850e-47 |
| Msa0268250 | Msa1460130 | 0.846617 | 1.940736e-59 | -8.615850e-47 |
| Msa0268260 | Msa1460130 | 0.832852 | 7.463712e-56 | -8.615850e-47 |
| Msa0268270 | Msa1460130 | 0.854848 | 9.362114e-62 | -8.615850e-47 |
| Msa0268300 | Msa1460130 | 0.839083 | 1.958843e-57 | -8.615850e-47 |
| Msa0268310 | Msa1460130 | 0.861270 | 1.154127e-63 | -8.615850e-47 |
| Msa0268390 | Msa1460130 | 0.811464 | 6.910724e-51 | -8.615850e-47 |
| Msa0268400 | Msa1460130 | 0.804620 | 1.979654e-49 | -8.615850e-47 |
| Msa0268410 | Msa1460130 | 0.811166 | 8.019254e-51 | -8.615850e-47 |
| Msa0268550 | Msa1460130 | 0.804204 | 2.417296e-49 | -8.615850e-47 |
| Msa0268560 | Msa1460130 | 0.817723 | 2.844596e-52 | -8.615850e-47 |
| Msa0268580 | Msa1460130 | 0.813195 | 2.894803e-51 | -8.615850e-47 |
| Msa0268630 | Msa1460130 | 0.813678 | 2.267173e-51 | -8.615850e-47 |
| Msa0268740 | Msa1460130 | 0.817701 | 2.876734e-52 | -8.615850e-47 |
| Msa0268830 | Msa1460130 | 0.812770 | 3.586083e-51 | -8.615850e-47 |
| Msa0268940 | Msa1460130 | 0.807795 | 4.244435e-50 | -8.615850e-47 |
| Msa0268950 | Msa1460130 | 0.820592 | 6.321633e-53 | -8.615850e-47 |
| Msa0268960 | Msa1460130 | 0.818966 | 1.487232e-52 | -8.615850e-47 |
| Msa0269040 | Msa1460130 | 0.827519 | 1.496185e-54 | -8.615850e-47 |
| Msa0269050 | Msa1460130 | 0.806237 | 9.069410e-50 | -8.615850e-47 |
| Msa0269130 | Msa1460130 | 0.868551 | 6.004160e-66 | -8.615850e-47 |
| Msa0269140 | Msa1460130 | 0.838276 | 3.166809e-57 | -8.615850e-47 |
| Msa0269150 | Msa1460130 | 0.848369 | 6.404906e-60 | -8.615850e-47 |
| Msa0344180 | Msa1460130 | 0.811822 | 5.776295e-51 | -8.615850e-47 |
| Msa0344310 | Msa1460130 | 0.812582 | 3.943584e-51 | -8.615850e-47 |
| Msa1143120 | Msa1460130 | 0.821882 | 3.188007e-53 | -8.615850e-47 |
| Msa1143180 | Msa1460130 | 0.802811 | 4.699861e-49 | -8.615850e-47 |
| Msa0564000 | Msa1460130 | 0.804953 | 1.686386e-49 | -8.615850e-47 |
| Msa0582510 | Msa1460130 | 0.816352 | 5.780674e-52 | -8.615850e-47 |
| Msa0582520 | Msa1460130 | 0.804897 | 1.732264e-49 | -8.615850e-47 |
| Msa0582630 | Msa1460130 | 0.808661 | 2.775866e-50 | -8.615850e-47 |
| Msa0582640 | Msa1460130 | 0.821382 | 4.160001e-53 | -8.615850e-47 |
| Msa0582660 | Msa1460130 | 0.800558 | 1.362262e-48 | -8.615850e-47 |
| Msa0582690 | Msa1460130 | 0.817193 | 3.744152e-52 | -8.615850e-47 |
| Msa0582750 | Msa1460130 | 0.804894 | 1.734944e-49 | -8.615850e-47 |
| Msa0582760 | Msa1460130 | 0.819356 | 1.212405e-52 | -8.615850e-47 |
| Msa0582780 | Msa1460130 | 0.800066 | 1.716031e-48 | -8.615850e-47 |
| Msa0582810 | Msa1460130 | 0.819521 | 1.111808e-52 | -8.615850e-47 |
| Msa0582820 | Msa1460130 | 0.803475 | 3.425159e-49 | -8.615850e-47 |
| Msa0582910 | Msa1460130 | 0.824177 | 9.293981e-54 | -8.615850e-47 |
| Msa0582930 | Msa1460130 | 0.803740 | 3.017300e-49 | -8.615850e-47 |
| Msa0591270 | Msa1460130 | 0.814061 | 1.866512e-51 | -8.615850e-47 |
| Msa0591290 | Msa1460130 | 0.837516 | 4.963771e-57 | -8.615850e-47 |
| Msa0591310 | Msa1460130 | 0.897474 | 1.357336e-76 | -8.615850e-47 |
| Msa0591350 | Msa1460130 | 0.887355 | 1.534738e-72 | -8.615850e-47 |
| Msa0591360 | Msa1460130 | 0.830722 | 2.501874e-55 | -8.615850e-47 |
| Msa0591380 | Msa1460130 | 0.846878 | 1.647148e-59 | -8.615850e-47 |
| Msa0844260 | Msa1460130 | 0.810422 | 1.161593e-50 | -8.615850e-47 |
| Msa0867680 | Msa1460130 | 0.843077 | 1.748898e-58 | -8.615850e-47 |
| Msa0867690 | Msa1460130 | 0.858091 | 1.044740e-62 | -8.615850e-47 |
| Msa0876520 | Msa1460130 | 0.835550 | 1.572019e-56 | -8.615850e-47 |
| Msa0908220 | Msa1460130 | 0.849999 | 2.254971e-60 | -8.615850e-47 |
| Msa0908230 | Msa1460130 | 0.865461 | 5.808901e-65 | -8.615850e-47 |
| Msa0908240 | Msa1460130 | 0.858224 | 9.539015e-63 | -8.615850e-47 |
| Msa0908310 | Msa1460130 | 0.836856 | 7.323590e-57 | -8.615850e-47 |
| Msa0908320 | Msa1460130 | 0.859619 | 3.649848e-63 | -8.615850e-47 |
| Msa0908370 | Msa1460130 | 0.844086 | 9.399535e-59 | -8.615850e-47 |
| Msa0908380 | Msa1460130 | 0.828398 | 9.190975e-55 | -8.615850e-47 |
| Msa0908430 | Msa1460130 | 0.845615 | 3.636410e-59 | -8.615850e-47 |
| Msa0908440 | Msa1460130 | 0.856993 | 2.209481e-62 | -8.615850e-47 |
| Msa0908450 | Msa1460130 | 0.870870 | 1.052301e-66 | -8.615850e-47 |
| Msa0908480 | Msa1460130 | 0.807469 | 4.978395e-50 | -8.615850e-47 |
| Msa0908530 | Msa1460130 | 0.863134 | 3.092528e-64 | -8.615850e-47 |
| Msa0908540 | Msa1460130 | 0.870782 | 1.125045e-66 | -8.615850e-47 |
| Msa0908590 | Msa1460130 | 0.831667 | 1.465813e-55 | -8.615850e-47 |
| Msa0908600 | Msa1460130 | 0.844044 | 9.643626e-59 | -8.615850e-47 |
| Msa0908610 | Msa1460130 | 0.823202 | 1.572824e-53 | -8.615850e-47 |
| Msa0908650 | Msa1460130 | 0.865151 | 7.269845e-65 | -8.615850e-47 |
| Msa0908660 | Msa1460130 | 0.837205 | 5.962349e-57 | -8.615850e-47 |
| Msa0908670 | Msa1460130 | 0.853412 | 2.430957e-61 | -8.615850e-47 |
| Msa0908720 | Msa1460130 | 0.860213 | 2.415529e-63 | -8.615850e-47 |
| Msa0908730 | Msa1460130 | 0.851033 | 1.154557e-60 | -8.615850e-47 |
| Msa0911190 | Msa1460130 | 0.833034 | 6.723424e-56 | -8.615850e-47 |
| Msa0911200 | Msa1460130 | 0.833989 | 3.883764e-56 | -8.615850e-47 |
| Msa0911230 | Msa1460130 | 0.800883 | 1.169308e-48 | -8.615850e-47 |
| Msa0924820 | Msa1460130 | 0.805995 | 1.019633e-49 | -8.615850e-47 |
| Msa0924830 | Msa1460130 | 0.838170 | 3.371013e-57 | -8.615850e-47 |
| Msa0924870 | Msa1460130 | 0.812792 | 3.547036e-51 | -8.615850e-47 |
| Msa0924930 | Msa1460130 | 0.839089 | 1.951561e-57 | -8.615850e-47 |
| Msa0924940 | Msa1460130 | 0.853888 | 1.774259e-61 | -8.615850e-47 |
| Msa0925100 | Msa1460130 | 0.872911 | 2.209705e-67 | -8.615850e-47 |
| Msa0925110 | Msa1460130 | 0.894034 | 3.602781e-75 | -8.615850e-47 |
| Msa0931070 | Msa1460130 | 0.818721 | 1.691173e-52 | -8.615850e-47 |
| Msa0931130 | Msa1460130 | 0.811921 | 5.496457e-51 | -8.615850e-47 |
| Msa0931220 | Msa1460130 | 0.812620 | 3.869068e-51 | -8.615850e-47 |
| Msa0931260 | Msa1460130 | 0.822017 | 2.966301e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460130 | MtrunA17_CPg0492431 | 99.438 | 178 | 1 | 0 | 1 | 178 | 106 | 283 | 5.01e-129 | 363 |
| Msa1460130 | MtrunA17_Chr3g0090851 | 99.438 | 178 | 1 | 0 | 1 | 178 | 106 | 283 | 5.01e-129 | 363 |
| Msa1460130 | MtrunA17_Chr4g0016091 | 99.438 | 178 | 1 | 0 | 1 | 178 | 106 | 283 | 5.01e-129 | 363 |
| Msa1460130 | MtrunA17_Chr1g0195541 | 99.415 | 171 | 1 | 0 | 1 | 171 | 1 | 171 | 3.91e-123 | 344 |
| Msa1460130 | MtrunA17_Chr1g0153231 | 88.889 | 81 | 9 | 0 | 58 | 138 | 1 | 81 | 1.51e-46 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460130 | ATCG00890.1 | 97.794 | 136 | 3 | 0 | 1 | 136 | 1 | 136 | 1.74e-90 | 270 |
| Msa1460130 | ATCG01250.1 | 97.794 | 136 | 3 | 0 | 1 | 136 | 1 | 136 | 1.74e-90 | 270 |
Find 46 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTTTCTCTTGGCTATA+TGG | 0.197078 | tig0040677:+9814 | Msa1460130:CDS |
| TGGGGCAAGCTCTTCTATTC+TGG | 0.197255 | tig0040677:+9789 | Msa1460130:CDS |
| CTATCTATTTCTGAGATGTT+TGG | 0.246287 | tig0040677:+10036 | Msa1460130:CDS |
| ATTAGACCGTACATCTTTCT+TGG | 0.278852 | tig0040677:-9737 | None:intergenic |
| ATATTCATCACTGTAGGAAT+TGG | 0.280413 | tig0040677:+9928 | Msa1460130:CDS |
| AGCTCTTCTATTCTGGTTCA+TGG | 0.287942 | tig0040677:+9796 | Msa1460130:CDS |
| TTCTGGTTCATGGTTTCTCT+TGG | 0.336946 | tig0040677:+9806 | Msa1460130:CDS |
| TTATGCTCCTATCTACTATC+TGG | 0.367530 | tig0040677:+9709 | Msa1460130:CDS |
| CCCTAGCCCCTTCTCATCAA+TGG | 0.393307 | tig0040677:+9962 | Msa1460130:CDS |
| TATTCATCACTGTAGGAATT+GGG | 0.417349 | tig0040677:+9929 | Msa1460130:CDS |
| TCTTGGCTATATGGTTCGTC+CGG | 0.418558 | tig0040677:+9823 | Msa1460130:CDS |
| CTTGGCTATATGGTTCGTCC+GGG | 0.468938 | tig0040677:+9824 | Msa1460130:CDS |
| TACTATGAAATATTTACTCA+TGG | 0.474204 | tig0040677:+9765 | Msa1460130:CDS |
| TAACAAGTAAAGTTATGTCT+TGG | 0.481945 | tig0040677:-10111 | None:intergenic |
| GGTATATCCAGATAGTAGAT+AGG | 0.488329 | tig0040677:-9716 | None:intergenic |
| ATAAGCGCAATTGAAATTCC+AGG | 0.496050 | tig0040677:-9907 | None:intergenic |
| TGAAATATTTACTCATGGGT+GGG | 0.506663 | tig0040677:+9770 | Msa1460130:CDS |
| CGCACTCCTTCATATACGTC+AGG | 0.510042 | tig0040677:-9988 | None:intergenic |
| TCCATTGATGAGAAGGGGCT+AGG | 0.510524 | tig0040677:-9963 | None:intergenic |
| TTGAAGCTCTATCTCTCCCC+CGG | 0.517737 | tig0040677:-9842 | None:intergenic |
| ACACAAATGTATAACTCCCC+TGG | 0.530663 | tig0040677:+9889 | Msa1460130:CDS |
| ATGAAATATTTACTCATGGG+TGG | 0.533610 | tig0040677:+9769 | Msa1460130:CDS |
| GAAATATTTACTCATGGGTG+GGG | 0.537789 | tig0040677:+9771 | Msa1460130:CDS |
| CAGGAGTCCATTGATGAGAA+GGG | 0.542754 | tig0040677:-9969 | None:intergenic |
| GAGCTTCAAGAAATAGTGAA+TGG | 0.546870 | tig0040677:+9856 | Msa1460130:CDS |
| TCAGGAGTCCATTGATGAGA+AGG | 0.551074 | tig0040677:-9970 | None:intergenic |
| CCATTGATGAGAAGGGGCTA+GGG | 0.552174 | tig0040677:-9962 | None:intergenic |
| TTCATATTAACCGCTACTCT+AGG | 0.552302 | tig0040677:+9622 | Msa1460130:CDS |
| GAAAGATGTACGGTCTAATG+AGG | 0.565206 | tig0040677:+9741 | Msa1460130:CDS |
| TAAGCGCAATTGAAATTCCA+GGG | 0.565360 | tig0040677:-9906 | None:intergenic |
| TGGCTATATGGTTCGTCCGG+GGG | 0.574450 | tig0040677:+9826 | Msa1460130:CDS |
| TTGGCTATATGGTTCGTCCG+GGG | 0.582473 | tig0040677:+9825 | Msa1460130:CDS |
| ACTATGAAATATTTACTCAT+GGG | 0.584827 | tig0040677:+9766 | Msa1460130:CDS |
| TGGACTCCTGACGTATATGA+AGG | 0.588163 | tig0040677:+9982 | Msa1460130:CDS |
| CATCTCAGAAATAGATAGAG+AGG | 0.593972 | tig0040677:-10031 | None:intergenic |
| GCGCTTATATTCATCACTGT+AGG | 0.594447 | tig0040677:+9922 | Msa1460130:CDS |
| ATATTAACCGCTACTCTAGG+AGG | 0.609728 | tig0040677:+9625 | Msa1460130:CDS |
| AGTTATGTCTTGGTCCGAGT+GGG | 0.616525 | tig0040677:-10101 | None:intergenic |
| GATATACCAAGAAAGATGTA+CGG | 0.625842 | tig0040677:+9731 | Msa1460130:CDS |
| AGGAGTCCATTGATGAGAAG+GGG | 0.632944 | tig0040677:-9968 | None:intergenic |
| TCAGAAATAGATAGAGAGGT+CGG | 0.633834 | tig0040677:-10027 | None:intergenic |
| AAGTTATGTCTTGGTCCGAG+TGG | 0.648471 | tig0040677:-10102 | None:intergenic |
| AAACATTCCTCCTAGAGTAG+CGG | 0.663526 | tig0040677:-9632 | None:intergenic |
| AGAGACATGCTATTCCCACT+CGG | 0.691777 | tig0040677:+10087 | Msa1460130:CDS |
| CTGACGTATATGAAGGAGTG+CGG | 0.702764 | tig0040677:+9989 | Msa1460130:CDS |
| AAGCGCAATTGAAATTCCAG+GGG | 0.720091 | tig0040677:-9905 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATGAAATATTTACTCA+TGG | + | tig0040677:9765-9784 | Msa1460130:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | + | tig0040677:9766-9785 | Msa1460130:CDS | 20.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | + | tig0040677:10055-10074 | Msa1460130:CDS | 25.0% |
| ! | TAACAAGTAAAGTTATGTCT+TGG | - | tig0040677:10114-10133 | None:intergenic | 25.0% |
| GATATACCAAGAAAGATGTA+CGG | + | tig0040677:9731-9750 | Msa1460130:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | + | tig0040677:9769-9788 | Msa1460130:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | + | tig0040677:9770-9789 | Msa1460130:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | + | tig0040677:9928-9947 | Msa1460130:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | + | tig0040677:9929-9948 | Msa1460130:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | + | tig0040677:10036-10055 | Msa1460130:CDS | 30.0% |
| TTCATATTAACCGCTACTCT+AGG | + | tig0040677:9622-9641 | Msa1460130:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | + | tig0040677:9709-9728 | Msa1460130:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | - | tig0040677:9719-9738 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | - | tig0040677:9740-9759 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | + | tig0040677:9771-9790 | Msa1460130:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | + | tig0040677:9856-9875 | Msa1460130:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | - | tig0040677:9909-9928 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | - | tig0040677:9910-9929 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | - | tig0040677:10030-10049 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | - | tig0040677:10034-10053 | None:intergenic | 35.0% | |
| ATATTAACCGCTACTCTAGG+AGG | + | tig0040677:9625-9644 | Msa1460130:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | - | tig0040677:9635-9654 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | + | tig0040677:9741-9760 | Msa1460130:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | + | tig0040677:9796-9815 | Msa1460130:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | + | tig0040677:9806-9825 | Msa1460130:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | + | tig0040677:9814-9833 | Msa1460130:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | + | tig0040677:9889-9908 | Msa1460130:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | - | tig0040677:9908-9927 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | + | tig0040677:9922-9941 | Msa1460130:CDS | 40.0% | |
| TCTTGGCTATATGGTTCGTC+CGG | + | tig0040677:9823-9842 | Msa1460130:CDS | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | - | tig0040677:9971-9990 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | - | tig0040677:9972-9991 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | - | tig0040677:9973-9992 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | + | tig0040677:9982-10001 | Msa1460130:CDS | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | + | tig0040677:9989-10008 | Msa1460130:CDS | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | + | tig0040677:10087-10106 | Msa1460130:CDS | 45.0% | |
| AGTTATGTCTTGGTCCGAGT+GGG | - | tig0040677:10104-10123 | None:intergenic | 45.0% | |
| AAGTTATGTCTTGGTCCGAG+TGG | - | tig0040677:10105-10124 | None:intergenic | 45.0% | |
| TGGGGCAAGCTCTTCTATTC+TGG | + | tig0040677:9789-9808 | Msa1460130:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | + | tig0040677:9824-9843 | Msa1460130:CDS | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | + | tig0040677:9825-9844 | Msa1460130:CDS | 50.0% | |
| TTGAAGCTCTATCTCTCCCC+CGG | - | tig0040677:9845-9864 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | - | tig0040677:9965-9984 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | - | tig0040677:9966-9985 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | - | tig0040677:9991-10010 | None:intergenic | 50.0% | |
| TGGCTATATGGTTCGTCCGG+GGG | + | tig0040677:9826-9845 | Msa1460130:CDS | 55.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | + | tig0040677:9962-9981 | Msa1460130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040677 | gene | 9598 | 10134 | 9598 | ID=Msa1460130;Name=Msa1460130 |
| tig0040677 | mRNA | 9598 | 10134 | 9598 | ID=Msa1460130-mRNA-1;Parent=Msa1460130;Name=Msa1460130-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|-1|0|1|-1|1|1|0|178 |
| tig0040677 | exon | 9598 | 10134 | 9598 | ID=Msa1460130-mRNA-1:exon:22582;Parent=Msa1460130-mRNA-1 |
| tig0040677 | CDS | 9598 | 10134 | 9598 | ID=Msa1460130-mRNA-1:cds;Parent=Msa1460130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
