Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405520 | RYR53088.1 | 85.308 | 211 | 23 | 1 | 16 | 218 | 135 | 345 | 1.90e-123 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405520 | sp|Q9B1A1|RR7_LOTJA | 89.189 | 148 | 8 | 1 | 14 | 153 | 7 | 154 | 2.68e-91 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405520 | A0A445CQA9 | 85.308 | 211 | 23 | 1 | 16 | 218 | 135 | 345 | 9.05e-124 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095190 | Msa0405520 | 0.810083 | 1.374876e-50 | -8.615850e-47 |
| Msa0221860 | Msa0405520 | 0.802332 | 5.898517e-49 | -8.615850e-47 |
| Msa0370210 | Msa0405520 | 0.808735 | 2.675850e-50 | -8.615850e-47 |
| Msa0398610 | Msa0405520 | 0.806187 | 9.293323e-50 | -8.615850e-47 |
| Msa0405420 | Msa0405520 | 0.843516 | 1.335922e-58 | -8.615850e-47 |
| Msa0405430 | Msa0405520 | 0.966758 | 2.379272e-126 | -8.615850e-47 |
| Msa0405440 | Msa0405520 | 0.849636 | 2.846691e-60 | -8.615850e-47 |
| Msa0405510 | Msa0405520 | 0.846147 | 2.607473e-59 | -8.615850e-47 |
| Msa0405520 | Msa0405530 | 0.836385 | 9.655117e-57 | -8.615850e-47 |
| Msa0405520 | Msa0449900 | 0.805247 | 1.463552e-49 | -8.615850e-47 |
| Msa0405520 | Msa0591290 | 0.909735 | 4.101186e-82 | -8.615850e-47 |
| Msa0405520 | Msa0591310 | 0.847282 | 1.276073e-59 | -8.615850e-47 |
| Msa0405520 | Msa0591350 | 0.878294 | 3.155017e-69 | -8.615850e-47 |
| Msa0405520 | Msa0591360 | 0.837026 | 6.627371e-57 | -8.615850e-47 |
| Msa0405520 | Msa0591380 | 0.834219 | 3.401380e-56 | -8.615850e-47 |
| Msa0405520 | Msa0668630 | 0.842431 | 2.597198e-58 | -8.615850e-47 |
| Msa0405520 | Msa0727040 | 0.805299 | 1.427731e-49 | -8.615850e-47 |
| Msa0405520 | Msa0844260 | 0.806651 | 7.415757e-50 | -8.615850e-47 |
| Msa0405520 | Msa0867680 | 0.812431 | 4.253852e-51 | -8.615850e-47 |
| Msa0405520 | Msa0867690 | 0.812581 | 3.944238e-51 | -8.615850e-47 |
| Msa0405520 | Msa0876520 | 0.815226 | 1.030247e-51 | -8.615850e-47 |
| Msa0405520 | Msa0876530 | 0.846456 | 2.147216e-59 | -8.615850e-47 |
| Msa0405520 | Msa0908220 | 0.841424 | 4.791619e-58 | -8.615850e-47 |
| Msa0405520 | Msa0908230 | 0.869259 | 3.539467e-66 | -8.615850e-47 |
| Msa0405520 | Msa0908240 | 0.837782 | 4.243048e-57 | -8.615850e-47 |
| Msa0405520 | Msa0908310 | 0.848499 | 5.894595e-60 | -8.615850e-47 |
| Msa0405520 | Msa0908320 | 0.833358 | 5.583899e-56 | -8.615850e-47 |
| Msa0405520 | Msa0908370 | 0.838596 | 2.618628e-57 | -8.615850e-47 |
| Msa0405520 | Msa0908380 | 0.803823 | 2.900897e-49 | -8.615850e-47 |
| Msa0405520 | Msa0908430 | 0.830366 | 3.058590e-55 | -8.615850e-47 |
| Msa0405520 | Msa0908440 | 0.863159 | 3.036804e-64 | -8.615850e-47 |
| Msa0405520 | Msa0908450 | 0.844394 | 7.766533e-59 | -8.615850e-47 |
| Msa0405520 | Msa0908530 | 0.852604 | 4.139391e-61 | -8.615850e-47 |
| Msa0405520 | Msa0908540 | 0.852027 | 6.043464e-61 | -8.615850e-47 |
| Msa0405520 | Msa0908590 | 0.830846 | 2.333123e-55 | -8.615850e-47 |
| Msa0405520 | Msa0908600 | 0.861153 | 1.253102e-63 | -8.615850e-47 |
| Msa0405520 | Msa0908650 | 0.816399 | 5.642437e-52 | -8.615850e-47 |
| Msa0405520 | Msa0908660 | 0.850241 | 1.929098e-60 | -8.615850e-47 |
| Msa0405520 | Msa0908670 | 0.839123 | 1.912177e-57 | -8.615850e-47 |
| Msa0405520 | Msa0908720 | 0.844573 | 6.952068e-59 | -8.615850e-47 |
| Msa0405520 | Msa0908730 | 0.844558 | 7.016600e-59 | -8.615850e-47 |
| Msa0405520 | Msa0911190 | 0.809239 | 2.087647e-50 | -8.615850e-47 |
| Msa0405520 | Msa0924820 | 0.831853 | 1.319034e-55 | -8.615850e-47 |
| Msa0405520 | Msa0924830 | 0.820824 | 5.592702e-53 | -8.615850e-47 |
| Msa0405520 | Msa0924930 | 0.868408 | 6.676181e-66 | -8.615850e-47 |
| Msa0405520 | Msa0924940 | 0.829715 | 4.408960e-55 | -8.615850e-47 |
| Msa0405520 | Msa0924970 | 0.817856 | 2.654200e-52 | -8.615850e-47 |
| Msa0405520 | Msa0925020 | 0.835592 | 1.533870e-56 | -8.615850e-47 |
| Msa0405520 | Msa0925100 | 0.875827 | 2.266174e-68 | -8.615850e-47 |
| Msa0405520 | Msa0925110 | 0.854348 | 1.306573e-61 | -8.615850e-47 |
| Msa0405520 | Msa0930990 | 0.812305 | 4.532296e-51 | -8.615850e-47 |
| Msa0405520 | Msa0983630 | 0.833252 | 5.934023e-56 | -8.615850e-47 |
| Msa0405520 | Msa0983640 | 0.833226 | 6.023695e-56 | -8.615850e-47 |
| Msa0405520 | Msa1022050 | 0.811850 | 5.697318e-51 | -8.615850e-47 |
| Msa0405520 | Msa1086330 | 0.803729 | 3.033222e-49 | -8.615850e-47 |
| Msa0405520 | Msa1086550 | 0.822156 | 2.753677e-53 | -8.615850e-47 |
| Msa0405520 | Msa1086560 | 0.812941 | 3.290057e-51 | -8.615850e-47 |
| Msa0405520 | Msa1086590 | 0.845236 | 4.605168e-59 | -8.615850e-47 |
| Msa0405520 | Msa1086600 | 0.813873 | 2.053535e-51 | -8.615850e-47 |
| Msa0405520 | Msa1086720 | 0.803018 | 4.259237e-49 | -8.615850e-47 |
| Msa0405520 | Msa1086730 | 0.843638 | 1.238855e-58 | -8.615850e-47 |
| Msa0405520 | Msa1086740 | 0.843450 | 1.390700e-58 | -8.615850e-47 |
| Msa0405520 | Msa1086790 | 0.834339 | 3.174029e-56 | -8.615850e-47 |
| Msa0405520 | Msa1086800 | 0.834056 | 3.737764e-56 | -8.615850e-47 |
| Msa0405520 | Msa1086830 | 0.809483 | 1.850618e-50 | -8.615850e-47 |
| Msa0405520 | Msa1086960 | 0.805390 | 1.366435e-49 | -8.615850e-47 |
| Msa0405520 | Msa1086970 | 0.823215 | 1.561344e-53 | -8.615850e-47 |
| Msa0405520 | Msa1087030 | 0.811215 | 7.824345e-51 | -8.615850e-47 |
| Msa0405520 | Msa1087040 | 0.855581 | 5.732399e-62 | -8.615850e-47 |
| Msa0405520 | Msa1087050 | 0.829614 | 4.663765e-55 | -8.615850e-47 |
| Msa0405520 | Msa1087110 | 0.827701 | 1.352434e-54 | -8.615850e-47 |
| Msa0405520 | Msa1087120 | 0.827306 | 1.682611e-54 | -8.615850e-47 |
| Msa0405520 | Msa1098570 | 0.823005 | 1.747955e-53 | -8.615850e-47 |
| Msa0405520 | Msa1342040 | 0.813921 | 2.003478e-51 | -8.615850e-47 |
| Msa0405520 | Msa1354420 | 0.830733 | 2.487349e-55 | -8.615850e-47 |
| Msa0405520 | Msa1354430 | 0.837055 | 6.514441e-57 | -8.615850e-47 |
| Msa0405520 | Msa1354480 | 0.827780 | 1.294718e-54 | -8.615850e-47 |
| Msa0405520 | Msa1354490 | 0.860443 | 2.057796e-63 | -8.615850e-47 |
| Msa0405520 | Msa1354500 | 0.833612 | 4.825658e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354550 | 0.833853 | 4.199796e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354560 | 0.810594 | 1.066386e-50 | -8.615850e-47 |
| Msa0405520 | Msa1354610 | 0.836022 | 1.193806e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354620 | 0.853230 | 2.742139e-61 | -8.615850e-47 |
| Msa0405520 | Msa1354630 | 0.835404 | 1.711952e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354680 | 0.813365 | 2.655627e-51 | -8.615850e-47 |
| Msa0405520 | Msa1354690 | 0.851481 | 8.627555e-61 | -8.615850e-47 |
| Msa0405520 | Msa1354700 | 0.812152 | 4.894282e-51 | -8.615850e-47 |
| Msa0405520 | Msa1354740 | 0.818510 | 1.888315e-52 | -8.615850e-47 |
| Msa0405520 | Msa1354750 | 0.862786 | 3.958265e-64 | -8.615850e-47 |
| Msa0405520 | Msa1354760 | 0.835043 | 2.111041e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354810 | 0.831217 | 1.891800e-55 | -8.615850e-47 |
| Msa0405520 | Msa1354820 | 0.852163 | 5.529326e-61 | -8.615850e-47 |
| Msa0405520 | Msa1354980 | 0.836030 | 1.187767e-56 | -8.615850e-47 |
| Msa0405520 | Msa1354990 | 0.836059 | 1.168463e-56 | -8.615850e-47 |
| Msa0405520 | Msa1355020 | 0.811710 | 6.111079e-51 | -8.615850e-47 |
| Msa0405520 | Msa1365890 | 0.821584 | 3.735816e-53 | -8.615850e-47 |
| Msa0405520 | Msa1365900 | 0.816899 | 4.358709e-52 | -8.615850e-47 |
| Msa0405520 | Msa1365950 | 0.832688 | 8.193854e-56 | -8.615850e-47 |
| Msa0405520 | Msa1365960 | 0.825877 | 3.688021e-54 | -8.615850e-47 |
| Msa0405520 | Msa1365970 | 0.824066 | 9.873688e-54 | -8.615850e-47 |
| Msa0405520 | Msa1366080 | 0.819360 | 1.209831e-52 | -8.615850e-47 |
| Msa0405520 | Msa1366090 | 0.804947 | 1.691360e-49 | -8.615850e-47 |
| Msa0405520 | Msa1368230 | 0.840132 | 1.045064e-57 | -8.615850e-47 |
| Msa0405520 | Msa1368240 | 0.842897 | 1.952616e-58 | -8.615850e-47 |
| Msa0405520 | Msa1385410 | 0.813564 | 2.401545e-51 | -8.615850e-47 |
| Msa0405520 | Msa1385420 | 0.803440 | 3.483134e-49 | -8.615850e-47 |
| Msa0405520 | Msa1391090 | 0.831346 | 1.759007e-55 | -8.615850e-47 |
| Msa0405520 | Msa1391100 | 0.866149 | 3.522200e-65 | -8.615850e-47 |
| Msa0405520 | Msa1391110 | 0.827282 | 1.705067e-54 | -8.615850e-47 |
| Msa0405520 | Msa1391160 | 0.838056 | 3.607137e-57 | -8.615850e-47 |
| Msa0405520 | Msa1391170 | 0.821395 | 4.130050e-53 | -8.615850e-47 |
| Msa0405520 | Msa1391220 | 0.831114 | 2.005528e-55 | -8.615850e-47 |
| Msa0405520 | Msa1391230 | 0.871058 | 9.121737e-67 | -8.615850e-47 |
| Msa0405520 | Msa1391240 | 0.835922 | 1.265352e-56 | -8.615850e-47 |
| Msa0405520 | Msa1394090 | 0.803266 | 3.783184e-49 | -8.615850e-47 |
| Msa0405520 | Msa1394220 | 0.801719 | 7.885952e-49 | -8.615850e-47 |
| Msa0405520 | Msa1394280 | 0.800394 | 1.470930e-48 | -8.615850e-47 |
| Msa0405520 | Msa1460120 | 0.926393 | 4.987964e-91 | -8.615850e-47 |
| Msa0405520 | Msa1460130 | 0.866842 | 2.120558e-65 | -8.615850e-47 |
| Msa0263770 | Msa0405520 | 0.912247 | 2.423034e-83 | -8.615850e-47 |
| Msa0268220 | Msa0405520 | 0.807540 | 4.809870e-50 | -8.615850e-47 |
| Msa0268250 | Msa0405520 | 0.801299 | 9.612579e-49 | -8.615850e-47 |
| Msa0268260 | Msa0405520 | 0.856467 | 3.153680e-62 | -8.615850e-47 |
| Msa0268270 | Msa0405520 | 0.833259 | 5.911474e-56 | -8.615850e-47 |
| Msa0268300 | Msa0405520 | 0.820907 | 5.351360e-53 | -8.615850e-47 |
| Msa0268310 | Msa0405520 | 0.853096 | 2.994615e-61 | -8.615850e-47 |
| Msa0269130 | Msa0405520 | 0.832318 | 1.012497e-55 | -8.615850e-47 |
| Msa0269140 | Msa0405520 | 0.858891 | 6.032026e-63 | -8.615850e-47 |
| Msa0269150 | Msa0405520 | 0.844818 | 5.973685e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405520 | MtrunA17_CPg0492421 | 85.333 | 150 | 12 | 1 | 14 | 153 | 7 | 156 | 1.50e-87 | 255 |
| Msa0405520 | MtrunA17_Chr4g0016101 | 85.333 | 150 | 12 | 1 | 14 | 153 | 7 | 156 | 1.50e-87 | 255 |
| Msa0405520 | MtrunA17_Chr3g0090841 | 85.333 | 150 | 12 | 1 | 14 | 153 | 7 | 156 | 1.50e-87 | 255 |
| Msa0405520 | MtrunA17_CPg0492431 | 96.875 | 64 | 2 | 0 | 155 | 218 | 4 | 67 | 3.47e-36 | 128 |
| Msa0405520 | MtrunA17_Chr3g0090851 | 96.875 | 64 | 2 | 0 | 155 | 218 | 4 | 67 | 3.47e-36 | 128 |
| Msa0405520 | MtrunA17_Chr4g0016091 | 96.875 | 64 | 2 | 0 | 155 | 218 | 4 | 67 | 3.47e-36 | 128 |
| Msa0405520 | MtrunA17_Chr4g0002541 | 73.333 | 60 | 8 | 1 | 32 | 83 | 1 | 60 | 9.03e-22 | 84.7 |
| Msa0405520 | MtrunA17_Chr4g0057401 | 87.179 | 39 | 5 | 0 | 115 | 153 | 1 | 39 | 6.55e-16 | 68.9 |
| Msa0405520 | MtrunA17_Chr7g0268431 | 33.758 | 157 | 91 | 4 | 5 | 148 | 50 | 206 | 8.85e-13 | 64.7 |
| Msa0405520 | MtrunA17_Chr1g0176261 | 33.333 | 159 | 93 | 4 | 3 | 148 | 81 | 239 | 1.18e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405520 | ATCG00900.1 | 87.838 | 148 | 10 | 1 | 14 | 153 | 7 | 154 | 4.25e-91 | 264 |
| Msa0405520 | ATCG01240.1 | 87.838 | 148 | 10 | 1 | 14 | 153 | 7 | 154 | 4.25e-91 | 264 |
| Msa0405520 | ATMG01270.1 | 31.655 | 139 | 77 | 4 | 29 | 153 | 11 | 145 | 3.40e-13 | 65.1 |
| Msa0405520 | AT2G07696.1 | 31.655 | 139 | 77 | 4 | 29 | 153 | 11 | 145 | 3.40e-13 | 65.1 |
| Msa0405520 | AT2G37270.1 | 33.333 | 159 | 93 | 4 | 3 | 148 | 49 | 207 | 1.02e-11 | 62.4 |
| Msa0405520 | AT2G37270.2 | 33.333 | 159 | 93 | 4 | 3 | 148 | 49 | 207 | 1.02e-11 | 62.4 |
| Msa0405520 | AT3G11940.1 | 32.704 | 159 | 94 | 4 | 3 | 148 | 49 | 207 | 2.72e-11 | 61.2 |
| Msa0405520 | AT3G11940.2 | 32.704 | 159 | 94 | 4 | 3 | 148 | 49 | 207 | 2.72e-11 | 61.2 |
Find 33 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCGTGACATGAGCGTAAA+AGG | 0.177996 | 3_2:+40290246 | None:intergenic |
| ACTAATCGATTACGATAAAT+TGG | 0.238141 | 3_2:+40290190 | None:intergenic |
| CTTGCCATTCGTTGGTTATT+AGG | 0.268444 | 3_2:-40289941 | Msa0405520:CDS |
| CATCAAGTTCCCGTTGAAAT+AGG | 0.307921 | 3_2:-40289983 | Msa0405520:CDS |
| AAAACGTCCAGGTCGAAATA+TGG | 0.317789 | 3_2:-40289909 | Msa0405520:CDS |
| CAAATTAAGTTCCGAATTAG+TGG | 0.342047 | 3_2:-40289882 | Msa0405520:CDS |
| TGGCGATGCCATACGCAAAA+AGG | 0.366109 | 3_2:-40289843 | Msa0405520:CDS |
| TTTGGCAGCATCCACTAATT+CGG | 0.404543 | 3_2:+40289871 | None:intergenic |
| GCTTGACGTAAAACAGATAG+TGG | 0.426676 | 3_2:+40290064 | None:intergenic |
| GTAAAAGCAAGACGCGTAAA+CGG | 0.427761 | 3_2:-40290013 | Msa0405520:CDS |
| TATGGCATCGCCATTCCCTT+TGG | 0.436234 | 3_2:+40289853 | None:intergenic |
| TGTGTGGATCCTATTTCAAC+GGG | 0.470768 | 3_2:+40289974 | None:intergenic |
| TTATCTATCGAGCTATGAAA+AGG | 0.512086 | 3_2:-40290111 | Msa0405520:CDS |
| GAAAAGCACTTGCCATTCGT+TGG | 0.526859 | 3_2:-40289949 | Msa0405520:CDS |
| GTGGATGCTGCCAAAGGGAA+TGG | 0.532446 | 3_2:-40289863 | Msa0405520:CDS |
| TAATCGATTAGTTAACATGT+TGG | 0.538486 | 3_2:-40290179 | Msa0405520:CDS |
| GGCGCATCCCGAAAACGTCC+AGG | 0.540732 | 3_2:-40289920 | Msa0405520:CDS |
| AAAGGAAGAGACTCATAGAA+TGG | 0.548096 | 3_2:-40289825 | Msa0405520:CDS |
| TTGTGTGGATCCTATTTCAA+CGG | 0.548545 | 3_2:+40289973 | None:intergenic |
| GCCGTGACATGAGCGTAAAA+GGG | 0.558201 | 3_2:+40290247 | None:intergenic |
| ATCGAAAAGAAGCAAATGAA+AGG | 0.561694 | 3_2:+40289480 | None:intergenic |
| TCATGGGTTCTTCTCTCCAT+CGG | 0.567612 | 3_2:+40289311 | None:intergenic |
| TAACGGCGCTGTTGTTCCGA+TGG | 0.571426 | 3_2:-40289327 | Msa0405520:CDS |
| AATTAGTGGATGCTGCCAAA+GGG | 0.575951 | 3_2:-40289868 | Msa0405520:CDS |
| GAATTAGTGGATGCTGCCAA+AGG | 0.584526 | 3_2:-40289869 | Msa0405520:CDS |
| AGAGACTCATAGAATGGCAG+AGG | 0.593635 | 3_2:-40289819 | Msa0405520:CDS |
| TTGAAAGCCATATTTCGACC+TGG | 0.605724 | 3_2:+40289902 | None:intergenic |
| TGCGCCTAATAACCAACGAA+TGG | 0.620213 | 3_2:+40289937 | None:intergenic |
| TCGATTACGATAAATTGGAT+CGG | 0.627987 | 3_2:+40290195 | None:intergenic |
| AAGTTTAGTAATGAGCATAA+CGG | 0.644237 | 3_2:-40289344 | Msa0405520:CDS |
| GTTAACCGTATTATGAAACA+CGG | 0.650772 | 3_2:-40290157 | Msa0405520:CDS |
| TTTACGCTCATGTCACGGCG+AGG | 0.672550 | 3_2:-40290243 | Msa0405520:CDS |
| GTTGAAATAGGATCCACACA+AGG | 0.731975 | 3_2:-40289971 | Msa0405520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAGAGGAATATT+TGG | - | chr3_2:40289967-40289986 | Msa0405520:CDS | 15.0% |
| !! | AATAAATAAAGAGGAATATT+TGG | - | chr3_2:40289967-40289986 | Msa0405520:CDS | 15.0% |
| !! | AGAATCAATAGAAAAAGAAT+CGG | - | chr3_2:40289864-40289883 | Msa0405520:CDS | 20.0% |
| !! | TTGCTTAAGAATAAATAAAG+AGG | - | chr3_2:40289958-40289977 | Msa0405520:CDS | 20.0% |
| !!! | AGGAATATTTGGTATTTTTT+TGG | - | chr3_2:40289978-40289997 | Msa0405520:CDS | 20.0% |
| !! | AGAATCAATAGAAAAAGAAT+CGG | - | chr3_2:40289864-40289883 | Msa0405520:CDS | 20.0% |
| !! | TTGCTTAAGAATAAATAAAG+AGG | - | chr3_2:40289958-40289977 | Msa0405520:CDS | 20.0% |
| !!! | AGGAATATTTGGTATTTTTT+TGG | - | chr3_2:40289978-40289997 | Msa0405520:CDS | 20.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | + | chr3_2:40289378-40289397 | None:intergenic | 25.0% |
| !! | TAATCGATTAGTTAACATGT+TGG | - | chr3_2:40289386-40289405 | Msa0405520:CDS | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | + | chr3_2:40289416-40289435 | None:intergenic | 25.0% |
| !! | GATTCTTTTCCAATTATGTA+TGG | + | chr3_2:40289850-40289869 | None:intergenic | 25.0% |
| ! | GAAGAATTAGACCAAAAATT+AGG | + | chr3_2:40290137-40290156 | None:intergenic | 25.0% |
| ! | AAGTTTAGTAATGAGCATAA+CGG | - | chr3_2:40290221-40290240 | Msa0405520:CDS | 25.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | + | chr3_2:40289378-40289397 | None:intergenic | 25.0% |
| !! | TAATCGATTAGTTAACATGT+TGG | - | chr3_2:40289386-40289405 | Msa0405520:CDS | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | + | chr3_2:40289416-40289435 | None:intergenic | 25.0% |
| !! | GATTCTTTTCCAATTATGTA+TGG | + | chr3_2:40289850-40289869 | None:intergenic | 25.0% |
| ! | GAAGAATTAGACCAAAAATT+AGG | + | chr3_2:40290137-40290156 | None:intergenic | 25.0% |
| ! | AAGTTTAGTAATGAGCATAA+CGG | - | chr3_2:40290221-40290240 | Msa0405520:CDS | 25.0% |
| ! | ATAAATTGGATCGGATTTTG+CGG | + | chr3_2:40289364-40289383 | None:intergenic | 30.0% |
| TCGATTACGATAAATTGGAT+CGG | + | chr3_2:40289373-40289392 | None:intergenic | 30.0% | |
| GTTAACCGTATTATGAAACA+CGG | - | chr3_2:40289408-40289427 | Msa0405520:CDS | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | - | chr3_2:40289422-40289441 | Msa0405520:CDS | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | - | chr3_2:40289454-40289473 | Msa0405520:CDS | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | + | chr3_2:40289544-40289563 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | - | chr3_2:40289683-40289702 | Msa0405520:intron | 30.0% | |
| ACATAGACCTATGTTATGTA+TGG | - | chr3_2:40289822-40289841 | Msa0405520:CDS | 30.0% | |
| TATGGATCCATACATAACAT+AGG | + | chr3_2:40289832-40289851 | None:intergenic | 30.0% | |
| TGTATGGATCCATACATAAT+TGG | - | chr3_2:40289838-40289857 | Msa0405520:CDS | 30.0% | |
| GAAAGACGAAATAGAAATGA+TGG | - | chr3_2:40289912-40289931 | Msa0405520:CDS | 30.0% | |
| ATCGAAAAGAAGCAAATGAA+AGG | + | chr3_2:40290088-40290107 | None:intergenic | 30.0% | |
| ! | TTTCATTTGCTTCTTTTCGA+TGG | - | chr3_2:40290087-40290106 | Msa0405520:CDS | 30.0% |
| !!! | CGATGGAAGTTTTATTTTTC+CGG | - | chr3_2:40290104-40290123 | Msa0405520:CDS | 30.0% |
| CCAAAAATTAGGATCAATTC+CGG | + | chr3_2:40290126-40290145 | None:intergenic | 30.0% | |
| ! | AGATAGATCTTTTTGATCAG+AGG | + | chr3_2:40290178-40290197 | None:intergenic | 30.0% |
| CTGATCAAAAAGATCTATCT+TGG | - | chr3_2:40290178-40290197 | Msa0405520:CDS | 30.0% | |
| ! | ATAAATTGGATCGGATTTTG+CGG | + | chr3_2:40289364-40289383 | None:intergenic | 30.0% |
| TCGATTACGATAAATTGGAT+CGG | + | chr3_2:40289373-40289392 | None:intergenic | 30.0% | |
| GTTAACCGTATTATGAAACA+CGG | - | chr3_2:40289408-40289427 | Msa0405520:CDS | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | - | chr3_2:40289422-40289441 | Msa0405520:CDS | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | - | chr3_2:40289454-40289473 | Msa0405520:CDS | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | + | chr3_2:40289544-40289563 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | - | chr3_2:40289683-40289702 | Msa0405520:intron | 30.0% | |
| ACATAGACCTATGTTATGTA+TGG | - | chr3_2:40289822-40289841 | Msa0405520:CDS | 30.0% | |
| TATGGATCCATACATAACAT+AGG | + | chr3_2:40289832-40289851 | None:intergenic | 30.0% | |
| TGTATGGATCCATACATAAT+TGG | - | chr3_2:40289838-40289857 | Msa0405520:CDS | 30.0% | |
| GAAAGACGAAATAGAAATGA+TGG | - | chr3_2:40289912-40289931 | Msa0405520:CDS | 30.0% | |
| ATCGAAAAGAAGCAAATGAA+AGG | + | chr3_2:40290088-40290107 | None:intergenic | 30.0% | |
| ! | TTTCATTTGCTTCTTTTCGA+TGG | - | chr3_2:40290087-40290106 | Msa0405520:CDS | 30.0% |
| !!! | CGATGGAAGTTTTATTTTTC+CGG | - | chr3_2:40290104-40290123 | Msa0405520:CDS | 30.0% |
| CCAAAAATTAGGATCAATTC+CGG | + | chr3_2:40290126-40290145 | None:intergenic | 30.0% | |
| ! | AGATAGATCTTTTTGATCAG+AGG | + | chr3_2:40290178-40290197 | None:intergenic | 30.0% |
| CTGATCAAAAAGATCTATCT+TGG | - | chr3_2:40290178-40290197 | Msa0405520:CDS | 30.0% | |
| ! | TTTTACGTCAAGCAATACGT+GGG | - | chr3_2:40289511-40289530 | Msa0405520:intron | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | + | chr3_2:40289543-40289562 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | + | chr3_2:40289595-40289614 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | - | chr3_2:40289740-40289759 | Msa0405520:intron | 35.0% | |
| ! | ATTTTCGTTAATCCATGAGC+AGG | - | chr3_2:40289787-40289806 | Msa0405520:intron | 35.0% |
| ! | CCGGAATTGATCCTAATTTT+TGG | - | chr3_2:40290123-40290142 | Msa0405520:CDS | 35.0% |
| ! | TTTTACGTCAAGCAATACGT+GGG | - | chr3_2:40289511-40289530 | Msa0405520:intron | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | + | chr3_2:40289543-40289562 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | + | chr3_2:40289595-40289614 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | - | chr3_2:40289740-40289759 | Msa0405520:intron | 35.0% | |
| ! | ATTTTCGTTAATCCATGAGC+AGG | - | chr3_2:40289787-40289806 | Msa0405520:intron | 35.0% |
| ! | CCGGAATTGATCCTAATTTT+TGG | - | chr3_2:40290123-40290142 | Msa0405520:CDS | 35.0% |
| GCTTGACGTAAAACAGATAG+TGG | + | chr3_2:40289504-40289523 | None:intergenic | 40.0% | |
| ! | GTTTTACGTCAAGCAATACG+TGG | - | chr3_2:40289510-40289529 | Msa0405520:intron | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | - | chr3_2:40289512-40289531 | Msa0405520:intron | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | - | chr3_2:40289552-40289571 | Msa0405520:intron | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | - | chr3_2:40289582-40289601 | Msa0405520:intron | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | + | chr3_2:40289594-40289613 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | - | chr3_2:40289594-40289613 | Msa0405520:intron | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | - | chr3_2:40289624-40289643 | Msa0405520:intron | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | + | chr3_2:40289656-40289675 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | - | chr3_2:40289656-40289675 | Msa0405520:intron | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | + | chr3_2:40289666-40289685 | None:intergenic | 40.0% | |
| TTTGGCAGCATCCACTAATT+CGG | + | chr3_2:40289697-40289716 | None:intergenic | 40.0% | |
| ! | AATTAGTGGATGCTGCCAAA+GGG | - | chr3_2:40289697-40289716 | Msa0405520:intron | 40.0% |
| ! | AGTCTCTTCCTTTTTGCGTA+TGG | + | chr3_2:40289733-40289752 | None:intergenic | 40.0% |
| GTGTATATAGATCCTGCTCA+TGG | + | chr3_2:40289802-40289821 | None:intergenic | 40.0% | |
| ! | ATGGCTCAACTAAGCACTTT+TGG | - | chr3_2:40289931-40289950 | Msa0405520:CDS | 40.0% |
| ! | TGGCTCAACTAAGCACTTTT+GGG | - | chr3_2:40289932-40289951 | Msa0405520:CDS | 40.0% |
| GCTTGACGTAAAACAGATAG+TGG | + | chr3_2:40289504-40289523 | None:intergenic | 40.0% | |
| ! | GTTTTACGTCAAGCAATACG+TGG | - | chr3_2:40289510-40289529 | Msa0405520:intron | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | - | chr3_2:40289512-40289531 | Msa0405520:intron | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | - | chr3_2:40289552-40289571 | Msa0405520:intron | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | - | chr3_2:40289582-40289601 | Msa0405520:intron | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | + | chr3_2:40289594-40289613 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | - | chr3_2:40289594-40289613 | Msa0405520:intron | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | - | chr3_2:40289624-40289643 | Msa0405520:intron | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | + | chr3_2:40289656-40289675 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | - | chr3_2:40289656-40289675 | Msa0405520:intron | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | + | chr3_2:40289666-40289685 | None:intergenic | 40.0% | |
| TTTGGCAGCATCCACTAATT+CGG | + | chr3_2:40289697-40289716 | None:intergenic | 40.0% | |
| ! | AATTAGTGGATGCTGCCAAA+GGG | - | chr3_2:40289697-40289716 | Msa0405520:intron | 40.0% |
| ! | AGTCTCTTCCTTTTTGCGTA+TGG | + | chr3_2:40289733-40289752 | None:intergenic | 40.0% |
| GTGTATATAGATCCTGCTCA+TGG | + | chr3_2:40289802-40289821 | None:intergenic | 40.0% | |
| ! | ATGGCTCAACTAAGCACTTT+TGG | - | chr3_2:40289931-40289950 | Msa0405520:CDS | 40.0% |
| ! | TGGCTCAACTAAGCACTTTT+GGG | - | chr3_2:40289932-40289951 | Msa0405520:CDS | 40.0% |
| ! | TCCCTTTTACGCTCATGTCA+CGG | - | chr3_2:40289317-40289336 | Msa0405520:CDS | 45.0% |
| !! | GAAAAGCACTTGCCATTCGT+TGG | - | chr3_2:40289616-40289635 | Msa0405520:intron | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | + | chr3_2:40289631-40289650 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | + | chr3_2:40289655-40289674 | None:intergenic | 45.0% |
| ! | GAATTAGTGGATGCTGCCAA+AGG | - | chr3_2:40289696-40289715 | Msa0405520:intron | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | - | chr3_2:40289746-40289765 | Msa0405520:intron | 45.0% | |
| ! | GGCTCAACTAAGCACTTTTG+GGG | - | chr3_2:40289933-40289952 | Msa0405520:CDS | 45.0% |
| TCATGGGTTCTTCTCTCCAT+CGG | + | chr3_2:40290257-40290276 | None:intergenic | 45.0% | |
| ! | TCCCTTTTACGCTCATGTCA+CGG | - | chr3_2:40289317-40289336 | Msa0405520:CDS | 45.0% |
| !! | GAAAAGCACTTGCCATTCGT+TGG | - | chr3_2:40289616-40289635 | Msa0405520:intron | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | + | chr3_2:40289631-40289650 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | + | chr3_2:40289655-40289674 | None:intergenic | 45.0% |
| ! | GAATTAGTGGATGCTGCCAA+AGG | - | chr3_2:40289696-40289715 | Msa0405520:intron | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | - | chr3_2:40289746-40289765 | Msa0405520:intron | 45.0% | |
| ! | GGCTCAACTAAGCACTTTTG+GGG | - | chr3_2:40289933-40289952 | Msa0405520:CDS | 45.0% |
| TCATGGGTTCTTCTCTCCAT+CGG | + | chr3_2:40290257-40290276 | None:intergenic | 45.0% | |
| GCCGTGACATGAGCGTAAAA+GGG | + | chr3_2:40289321-40289340 | None:intergenic | 50.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | + | chr3_2:40289610-40289629 | None:intergenic | 50.0% |
| TATGGCATCGCCATTCCCTT+TGG | + | chr3_2:40289715-40289734 | None:intergenic | 50.0% | |
| TGGCGATGCCATACGCAAAA+AGG | - | chr3_2:40289722-40289741 | Msa0405520:intron | 50.0% | |
| GCCGTGACATGAGCGTAAAA+GGG | + | chr3_2:40289321-40289340 | None:intergenic | 50.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | + | chr3_2:40289610-40289629 | None:intergenic | 50.0% |
| TATGGCATCGCCATTCCCTT+TGG | + | chr3_2:40289715-40289734 | None:intergenic | 50.0% | |
| TGGCGATGCCATACGCAAAA+AGG | - | chr3_2:40289722-40289741 | Msa0405520:intron | 50.0% | |
| CGCCGTGACATGAGCGTAAA+AGG | + | chr3_2:40289322-40289341 | None:intergenic | 55.0% | |
| TTTACGCTCATGTCACGGCG+AGG | - | chr3_2:40289322-40289341 | Msa0405520:CDS | 55.0% | |
| GTGGATGCTGCCAAAGGGAA+TGG | - | chr3_2:40289702-40289721 | Msa0405520:intron | 55.0% | |
| TAACGGCGCTGTTGTTCCGA+TGG | - | chr3_2:40290238-40290257 | Msa0405520:CDS | 55.0% | |
| CGCCGTGACATGAGCGTAAA+AGG | + | chr3_2:40289322-40289341 | None:intergenic | 55.0% | |
| TTTACGCTCATGTCACGGCG+AGG | - | chr3_2:40289322-40289341 | Msa0405520:CDS | 55.0% | |
| GTGGATGCTGCCAAAGGGAA+TGG | - | chr3_2:40289702-40289721 | Msa0405520:intron | 55.0% | |
| TAACGGCGCTGTTGTTCCGA+TGG | - | chr3_2:40290238-40290257 | Msa0405520:CDS | 55.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | - | chr3_2:40289645-40289664 | Msa0405520:intron | 65.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | - | chr3_2:40289645-40289664 | Msa0405520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 40289309 | 40290278 | 40289309 | ID=Msa0405520;Name=Msa0405520 |
| chr3_2 | mRNA | 40289309 | 40290278 | 40289309 | ID=Msa0405520-mRNA-1;Parent=Msa0405520;Name=Msa0405520-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0|0|3|0|218 |
| chr3_2 | exon | 40290059 | 40290278 | 40290059 | ID=Msa0405520-mRNA-1:exon:7832;Parent=Msa0405520-mRNA-1 |
| chr3_2 | exon | 40289795 | 40290034 | 40289795 | ID=Msa0405520-mRNA-1:exon:7831;Parent=Msa0405520-mRNA-1 |
| chr3_2 | exon | 40289309 | 40289502 | 40289309 | ID=Msa0405520-mRNA-1:exon:7830;Parent=Msa0405520-mRNA-1 |
| chr3_2 | CDS | 40290059 | 40290278 | 40290059 | ID=Msa0405520-mRNA-1:cds;Parent=Msa0405520-mRNA-1 |
| chr3_2 | CDS | 40289795 | 40290034 | 40289795 | ID=Msa0405520-mRNA-1:cds;Parent=Msa0405520-mRNA-1 |
| chr3_2 | CDS | 40289309 | 40289502 | 40289309 | ID=Msa0405520-mRNA-1:cds;Parent=Msa0405520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
