Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405510 | YP_009460313.1 | 96.774 | 310 | 5 | 1 | 1 | 305 | 106 | 415 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405510 | sp|P0CC47|NU2C2_CITSI | 95.082 | 305 | 8 | 1 | 1 | 305 | 124 | 421 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405510 | A0A2K9RHF9 | 96.774 | 310 | 5 | 1 | 1 | 305 | 106 | 415 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126750 | Msa0405510 | 0.803534 | 3.329141e-49 | -8.615850e-47 |
| Msa0405420 | Msa0405510 | 0.963257 | 7.278858e-122 | -8.615850e-47 |
| Msa0405430 | Msa0405510 | 0.856513 | 3.057118e-62 | -8.615850e-47 |
| Msa0405440 | Msa0405510 | 0.852006 | 6.127288e-61 | -8.615850e-47 |
| Msa0405510 | Msa0405520 | 0.846147 | 2.607473e-59 | -8.615850e-47 |
| Msa0405510 | Msa0405530 | 0.855535 | 5.909961e-62 | -8.615850e-47 |
| Msa0405510 | Msa0582510 | 0.803002 | 4.290221e-49 | -8.615850e-47 |
| Msa0405510 | Msa0582690 | 0.809736 | 1.632846e-50 | -8.615850e-47 |
| Msa0405510 | Msa0582810 | 0.809629 | 1.721953e-50 | -8.615850e-47 |
| Msa0405510 | Msa0582910 | 0.804679 | 1.923880e-49 | -8.615850e-47 |
| Msa0405510 | Msa0591270 | 0.811489 | 6.823210e-51 | -8.615850e-47 |
| Msa0405510 | Msa0591290 | 0.805089 | 1.579920e-49 | -8.615850e-47 |
| Msa0405510 | Msa0591310 | 0.910716 | 1.371220e-82 | -8.615850e-47 |
| Msa0405510 | Msa0591350 | 0.870135 | 1.834334e-66 | -8.615850e-47 |
| Msa0405510 | Msa0591360 | 0.854947 | 8.766435e-62 | -8.615850e-47 |
| Msa0405510 | Msa0591380 | 0.840231 | 9.850179e-58 | -8.615850e-47 |
| Msa0405510 | Msa0844260 | 0.806054 | 9.908090e-50 | -8.615850e-47 |
| Msa0405510 | Msa0867680 | 0.848326 | 6.583141e-60 | -8.615850e-47 |
| Msa0405510 | Msa0867690 | 0.865962 | 4.034249e-65 | -8.615850e-47 |
| Msa0405510 | Msa0876520 | 0.842614 | 2.321540e-58 | -8.615850e-47 |
| Msa0405510 | Msa0908220 | 0.874707 | 5.470240e-68 | -8.615850e-47 |
| Msa0405510 | Msa0908230 | 0.863094 | 3.181442e-64 | -8.615850e-47 |
| Msa0405510 | Msa0908240 | 0.817361 | 3.432687e-52 | -8.615850e-47 |
| Msa0405510 | Msa0908310 | 0.849276 | 3.586740e-60 | -8.615850e-47 |
| Msa0405510 | Msa0908320 | 0.898850 | 3.542128e-77 | -8.615850e-47 |
| Msa0405510 | Msa0908370 | 0.842910 | 1.937656e-58 | -8.615850e-47 |
| Msa0405510 | Msa0908380 | 0.844800 | 6.041194e-59 | -8.615850e-47 |
| Msa0405510 | Msa0908430 | 0.887264 | 1.661945e-72 | -8.615850e-47 |
| Msa0405510 | Msa0908440 | 0.864521 | 1.145065e-64 | -8.615850e-47 |
| Msa0405510 | Msa0908450 | 0.854605 | 1.101353e-61 | -8.615850e-47 |
| Msa0405510 | Msa0908480 | 0.810174 | 1.314009e-50 | -8.615850e-47 |
| Msa0405510 | Msa0908530 | 0.865965 | 4.026026e-65 | -8.615850e-47 |
| Msa0405510 | Msa0908540 | 0.879824 | 9.087098e-70 | -8.615850e-47 |
| Msa0405510 | Msa0908590 | 0.881674 | 1.972158e-70 | -8.615850e-47 |
| Msa0405510 | Msa0908600 | 0.860239 | 2.373430e-63 | -8.615850e-47 |
| Msa0405510 | Msa0908610 | 0.821462 | 3.986478e-53 | -8.615850e-47 |
| Msa0405510 | Msa0908650 | 0.893937 | 3.946272e-75 | -8.615850e-47 |
| Msa0405510 | Msa0908660 | 0.853816 | 1.860685e-61 | -8.615850e-47 |
| Msa0405510 | Msa0908670 | 0.858309 | 9.001969e-63 | -8.615850e-47 |
| Msa0405510 | Msa0908720 | 0.852272 | 5.145509e-61 | -8.615850e-47 |
| Msa0405510 | Msa0908730 | 0.865310 | 6.477671e-65 | -8.615850e-47 |
| Msa0405510 | Msa0911190 | 0.826522 | 2.591057e-54 | -8.615850e-47 |
| Msa0405510 | Msa0911200 | 0.851661 | 7.673548e-61 | -8.615850e-47 |
| Msa0405510 | Msa0911230 | 0.816635 | 4.994902e-52 | -8.615850e-47 |
| Msa0405510 | Msa0924830 | 0.837744 | 4.338923e-57 | -8.615850e-47 |
| Msa0405510 | Msa0924870 | 0.801952 | 7.062215e-49 | -8.615850e-47 |
| Msa0405510 | Msa0924930 | 0.876070 | 1.869521e-68 | -8.615850e-47 |
| Msa0405510 | Msa0924940 | 0.859187 | 4.919855e-63 | -8.615850e-47 |
| Msa0405510 | Msa0925100 | 0.871768 | 5.311616e-67 | -8.615850e-47 |
| Msa0405510 | Msa0925110 | 0.911468 | 5.879676e-83 | -8.615850e-47 |
| Msa0405510 | Msa0931220 | 0.805095 | 1.575352e-49 | -8.615850e-47 |
| Msa0405510 | Msa0931260 | 0.809929 | 1.484251e-50 | -8.615850e-47 |
| Msa0405510 | Msa0983630 | 0.841132 | 5.718796e-58 | -8.615850e-47 |
| Msa0405510 | Msa0983640 | 0.858107 | 1.033716e-62 | -8.615850e-47 |
| Msa0405510 | Msa1022050 | 0.834042 | 3.768230e-56 | -8.615850e-47 |
| Msa0405510 | Msa1022060 | 0.849161 | 3.862121e-60 | -8.615850e-47 |
| Msa0405510 | Msa1064410 | 0.818213 | 2.203731e-52 | -8.615850e-47 |
| Msa0405510 | Msa1086080 | 0.807935 | 3.964128e-50 | -8.615850e-47 |
| Msa0405510 | Msa1086140 | 0.807100 | 5.961123e-50 | -8.615850e-47 |
| Msa0405510 | Msa1086190 | 0.806162 | 9.402717e-50 | -8.615850e-47 |
| Msa0405510 | Msa1086200 | 0.800655 | 1.301440e-48 | -8.615850e-47 |
| Msa0405510 | Msa1086270 | 0.816688 | 4.860095e-52 | -8.615850e-47 |
| Msa0405510 | Msa1086550 | 0.882151 | 1.324844e-70 | -8.615850e-47 |
| Msa0405510 | Msa1086590 | 0.844535 | 7.118646e-59 | -8.615850e-47 |
| Msa0405510 | Msa1086600 | 0.878086 | 3.732779e-69 | -8.615850e-47 |
| Msa0405510 | Msa1086720 | 0.889179 | 3.053102e-73 | -8.615850e-47 |
| Msa0405510 | Msa1086730 | 0.840916 | 6.517029e-58 | -8.615850e-47 |
| Msa0405510 | Msa1086740 | 0.857303 | 1.789872e-62 | -8.615850e-47 |
| Msa0405510 | Msa1086790 | 0.854344 | 1.310186e-61 | -8.615850e-47 |
| Msa0405510 | Msa1086800 | 0.881117 | 3.132640e-70 | -8.615850e-47 |
| Msa0405510 | Msa1086890 | 0.805488 | 1.302820e-49 | -8.615850e-47 |
| Msa0405510 | Msa1086960 | 0.875519 | 2.890236e-68 | -8.615850e-47 |
| Msa0405510 | Msa1086970 | 0.844344 | 8.013930e-59 | -8.615850e-47 |
| Msa0405510 | Msa1087030 | 0.888007 | 8.644836e-73 | -8.615850e-47 |
| Msa0405510 | Msa1087040 | 0.860643 | 1.790282e-63 | -8.615850e-47 |
| Msa0405510 | Msa1087050 | 0.861516 | 9.712107e-64 | -8.615850e-47 |
| Msa0405510 | Msa1087110 | 0.864654 | 1.040624e-64 | -8.615850e-47 |
| Msa0405510 | Msa1087120 | 0.868471 | 6.370207e-66 | -8.615850e-47 |
| Msa0405510 | Msa1143120 | 0.809023 | 2.322607e-50 | -8.615850e-47 |
| Msa0405510 | Msa1143160 | 0.802605 | 5.182082e-49 | -8.615850e-47 |
| Msa0405510 | Msa1305090 | 0.801431 | 9.035855e-49 | -8.615850e-47 |
| Msa0405510 | Msa1342040 | 0.809773 | 1.603493e-50 | -8.615850e-47 |
| Msa0405510 | Msa1354420 | 0.844389 | 7.794502e-59 | -8.615850e-47 |
| Msa0405510 | Msa1354430 | 0.888381 | 6.207216e-73 | -8.615850e-47 |
| Msa0405510 | Msa1354480 | 0.882010 | 1.490697e-70 | -8.615850e-47 |
| Msa0405510 | Msa1354490 | 0.843548 | 1.309269e-58 | -8.615850e-47 |
| Msa0405510 | Msa1354500 | 0.861212 | 1.202432e-63 | -8.615850e-47 |
| Msa0405510 | Msa1354550 | 0.861701 | 8.526303e-64 | -8.615850e-47 |
| Msa0405510 | Msa1354560 | 0.877157 | 7.867946e-69 | -8.615850e-47 |
| Msa0405510 | Msa1354610 | 0.896171 | 4.764234e-76 | -8.615850e-47 |
| Msa0405510 | Msa1354620 | 0.851223 | 1.020750e-60 | -8.615850e-47 |
| Msa0405510 | Msa1354630 | 0.863083 | 3.206611e-64 | -8.615850e-47 |
| Msa0405510 | Msa1354680 | 0.834441 | 2.991966e-56 | -8.615850e-47 |
| Msa0405510 | Msa1354690 | 0.842744 | 2.144759e-58 | -8.615850e-47 |
| Msa0405510 | Msa1354700 | 0.872399 | 3.276017e-67 | -8.615850e-47 |
| Msa0405510 | Msa1354740 | 0.898890 | 3.403242e-77 | -8.615850e-47 |
| Msa0405510 | Msa1354750 | 0.861178 | 1.231468e-63 | -8.615850e-47 |
| Msa0405510 | Msa1354760 | 0.852191 | 5.426592e-61 | -8.615850e-47 |
| Msa0405510 | Msa1354810 | 0.852267 | 5.164289e-61 | -8.615850e-47 |
| Msa0405510 | Msa1354820 | 0.876792 | 1.053516e-68 | -8.615850e-47 |
| Msa0405510 | Msa1354980 | 0.862911 | 3.621938e-64 | -8.615850e-47 |
| Msa0405510 | Msa1354990 | 0.872878 | 2.266507e-67 | -8.615850e-47 |
| Msa0405510 | Msa1355080 | 0.803229 | 3.850938e-49 | -8.615850e-47 |
| Msa0405510 | Msa1365890 | 0.848708 | 5.160774e-60 | -8.615850e-47 |
| Msa0405510 | Msa1365900 | 0.837488 | 5.047019e-57 | -8.615850e-47 |
| Msa0405510 | Msa1365950 | 0.881120 | 3.125486e-70 | -8.615850e-47 |
| Msa0405510 | Msa1365960 | 0.842309 | 2.798080e-58 | -8.615850e-47 |
| Msa0405510 | Msa1365970 | 0.844714 | 6.373167e-59 | -8.615850e-47 |
| Msa0405510 | Msa1366080 | 0.858296 | 9.082294e-63 | -8.615850e-47 |
| Msa0405510 | Msa1366090 | 0.865379 | 6.162661e-65 | -8.615850e-47 |
| Msa0405510 | Msa1368230 | 0.864929 | 8.533302e-65 | -8.615850e-47 |
| Msa0405510 | Msa1368240 | 0.824940 | 6.148600e-54 | -8.615850e-47 |
| Msa0405510 | Msa1380610 | 0.810230 | 1.277943e-50 | -8.615850e-47 |
| Msa0405510 | Msa1385410 | 0.845054 | 5.157383e-59 | -8.615850e-47 |
| Msa0405510 | Msa1385420 | 0.842088 | 3.200630e-58 | -8.615850e-47 |
| Msa0405510 | Msa1391090 | 0.856797 | 2.523224e-62 | -8.615850e-47 |
| Msa0405510 | Msa1391100 | 0.829073 | 6.310521e-55 | -8.615850e-47 |
| Msa0405510 | Msa1391110 | 0.831597 | 1.525524e-55 | -8.615850e-47 |
| Msa0405510 | Msa1391160 | 0.843105 | 1.719013e-58 | -8.615850e-47 |
| Msa0405510 | Msa1391170 | 0.850160 | 2.032140e-60 | -8.615850e-47 |
| Msa0405510 | Msa1391220 | 0.844680 | 6.505953e-59 | -8.615850e-47 |
| Msa0405510 | Msa1391230 | 0.844462 | 7.448788e-59 | -8.615850e-47 |
| Msa0405510 | Msa1391240 | 0.846944 | 1.579241e-59 | -8.615850e-47 |
| Msa0405510 | Msa1394030 | 0.802148 | 6.437644e-49 | -8.615850e-47 |
| Msa0405510 | Msa1394040 | 0.808791 | 2.604043e-50 | -8.615850e-47 |
| Msa0405510 | Msa1394210 | 0.810713 | 1.005475e-50 | -8.615850e-47 |
| Msa0405510 | Msa1460120 | 0.875878 | 2.177634e-68 | -8.615850e-47 |
| Msa0405510 | Msa1460130 | 0.910887 | 1.132796e-82 | -8.615850e-47 |
| Msa0263770 | Msa0405510 | 0.854922 | 8.910155e-62 | -8.615850e-47 |
| Msa0268250 | Msa0405510 | 0.863484 | 2.409160e-64 | -8.615850e-47 |
| Msa0268260 | Msa0405510 | 0.837220 | 5.911411e-57 | -8.615850e-47 |
| Msa0268270 | Msa0405510 | 0.840108 | 1.060292e-57 | -8.615850e-47 |
| Msa0268300 | Msa0405510 | 0.850355 | 1.791692e-60 | -8.615850e-47 |
| Msa0268310 | Msa0405510 | 0.863706 | 2.055574e-64 | -8.615850e-47 |
| Msa0268390 | Msa0405510 | 0.801226 | 9.948287e-49 | -8.615850e-47 |
| Msa0268630 | Msa0405510 | 0.801631 | 8.221113e-49 | -8.615850e-47 |
| Msa0268740 | Msa0405510 | 0.802168 | 6.375723e-49 | -8.615850e-47 |
| Msa0268950 | Msa0405510 | 0.813115 | 3.014294e-51 | -8.615850e-47 |
| Msa0268960 | Msa0405510 | 0.812266 | 4.622687e-51 | -8.615850e-47 |
| Msa0269040 | Msa0405510 | 0.803406 | 3.539635e-49 | -8.615850e-47 |
| Msa0269130 | Msa0405510 | 0.875178 | 3.779958e-68 | -8.615850e-47 |
| Msa0269140 | Msa0405510 | 0.854820 | 9.542076e-62 | -8.615850e-47 |
| Msa0269150 | Msa0405510 | 0.846323 | 2.333857e-59 | -8.615850e-47 |
| Msa0344190 | Msa0405510 | 0.805711 | 1.170029e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405510 | MtrunA17_Chr1g0195541 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 9.75e-90 | 265 |
| Msa0405510 | MtrunA17_CPg0492431 | 99.242 | 132 | 1 | 0 | 1 | 132 | 106 | 237 | 3.68e-88 | 265 |
| Msa0405510 | MtrunA17_Chr3g0090851 | 99.242 | 132 | 1 | 0 | 1 | 132 | 106 | 237 | 3.68e-88 | 265 |
| Msa0405510 | MtrunA17_Chr4g0016091 | 99.242 | 132 | 1 | 0 | 1 | 132 | 106 | 237 | 3.68e-88 | 265 |
| Msa0405510 | MtrunA17_CPg0492451 | 99.130 | 115 | 1 | 0 | 191 | 305 | 1 | 115 | 1.40e-74 | 227 |
| Msa0405510 | MtrunA17_Chr4g0016071 | 99.130 | 115 | 1 | 0 | 191 | 305 | 1 | 115 | 1.40e-74 | 227 |
| Msa0405510 | MtrunA17_Chr3g0090871 | 97.248 | 109 | 3 | 0 | 191 | 299 | 1 | 109 | 3.58e-69 | 213 |
| Msa0405510 | MtrunA17_Chr1g0153231 | 97.297 | 74 | 2 | 0 | 58 | 131 | 1 | 74 | 5.31e-45 | 147 |
| Msa0405510 | MtrunA17_Chr0c03g0489881 | 35.593 | 177 | 103 | 4 | 129 | 305 | 2 | 167 | 1.78e-21 | 90.5 |
| Msa0405510 | MtrunA17_MTg0491931 | 35.593 | 177 | 103 | 4 | 129 | 305 | 2 | 167 | 1.78e-21 | 90.5 |
| Msa0405510 | MtrunA17_CPg0492181 | 25.574 | 305 | 204 | 8 | 6 | 301 | 147 | 437 | 7.39e-17 | 80.9 |
| Msa0405510 | MtrunA17_Chr4g0000831 | 25.210 | 238 | 160 | 7 | 6 | 239 | 32 | 255 | 4.98e-14 | 71.2 |
| Msa0405510 | MtrunA17_Chr6g0466221 | 24.918 | 305 | 186 | 9 | 6 | 301 | 147 | 417 | 4.75e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405510 | ATCG00890.1 | 94.098 | 305 | 11 | 1 | 1 | 305 | 1 | 298 | 0.0 | 568 |
| Msa0405510 | ATCG01250.1 | 94.098 | 305 | 11 | 1 | 1 | 305 | 1 | 298 | 0.0 | 568 |
| Msa0405510 | AT2G07689.1 | 35.593 | 177 | 103 | 4 | 129 | 305 | 2 | 167 | 2.24e-21 | 90.5 |
| Msa0405510 | ATCG01010.1 | 26.490 | 302 | 199 | 8 | 9 | 301 | 130 | 417 | 2.70e-16 | 79.7 |
Find 66 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGGATATGTAATTAT+TGG | 0.189063 | 3_2:-40287863 | Msa0405510:CDS |
| CATGGTTTCTCTTGGCTATA+TGG | 0.197078 | 3_2:-40288956 | Msa0405510:CDS |
| TGGGGCAAGCTCTTCTATTC+TGG | 0.197255 | 3_2:-40288981 | Msa0405510:CDS |
| GCTATTCTTAGCATGCTATT+AGG | 0.213688 | 3_2:-40287947 | Msa0405510:CDS |
| TTTGCTTGCATTGTGTTATT+TGG | 0.223841 | 3_2:-40287758 | Msa0405510:CDS |
| ATTAGACCGTACATCTTTCT+TGG | 0.278852 | 3_2:+40289033 | None:intergenic |
| ATATTCATCACTGTAGGAAT+TGG | 0.280413 | 3_2:-40288842 | Msa0405510:CDS |
| TCGTTTGATGAGAAATAAAA+AGG | 0.282633 | 3_2:+40287995 | None:intergenic |
| AGCTCTTCTATTCTGGTTCA+TGG | 0.287942 | 3_2:-40288974 | Msa0405510:CDS |
| CTATTCTTAGCATGCTATTA+GGG | 0.301257 | 3_2:-40287946 | Msa0405510:CDS |
| TATTCGTCCATAGGTCAAAT+TGG | 0.303171 | 3_2:-40287878 | Msa0405510:CDS |
| GCATACGTTTCATGCTTGTT+TGG | 0.326865 | 3_2:+40287906 | None:intergenic |
| TTCTGGTTCATGGTTTCTCT+TGG | 0.336946 | 3_2:-40288964 | Msa0405510:CDS |
| TTATGCTCCTATCTACTATC+TGG | 0.367530 | 3_2:-40289061 | Msa0405510:CDS |
| CATACGTTTCATGCTTGTTT+GGG | 0.369828 | 3_2:+40287907 | None:intergenic |
| GTAATTATTGGAATAATTGT+TGG | 0.373428 | 3_2:-40287851 | Msa0405510:CDS |
| CCCTAGCCCCTTCTCATCAA+TGG | 0.393307 | 3_2:-40288808 | Msa0405510:CDS |
| GTGTTATTTGGTCTACGTAC+TGG | 0.413420 | 3_2:-40287746 | Msa0405510:CDS |
| TATTCATCACTGTAGGAATT+GGG | 0.417349 | 3_2:-40288841 | Msa0405510:CDS |
| TCTTGGCTATATGGTTCGTC+CGG | 0.418558 | 3_2:-40288947 | Msa0405510:CDS |
| TACATATCCAATTTGACCTA+TGG | 0.420081 | 3_2:+40287871 | None:intergenic |
| GCCCTATGTCTATTATCCTT+AGG | 0.440840 | 3_2:-40287659 | Msa0405510:CDS |
| GGAGGTCTTCCTCCACTAGC+AGG | 0.443104 | 3_2:-40287638 | Msa0405510:CDS |
| AGCAAAAGTTCCTAGATTCA+TGG | 0.448640 | 3_2:+40287775 | None:intergenic |
| TTCTATATCTCCATGAATCT+AGG | 0.460861 | 3_2:-40287785 | Msa0405510:CDS |
| CTTGGCTATATGGTTCGTCC+GGG | 0.468938 | 3_2:-40288946 | Msa0405510:CDS |
| TACTATGAAATATTTACTCA+TGG | 0.474204 | 3_2:-40289005 | Msa0405510:CDS |
| GGTATATCCAGATAGTAGAT+AGG | 0.488329 | 3_2:+40289054 | None:intergenic |
| ATAAGCGCAATTGAAATTCC+AGG | 0.496050 | 3_2:+40288863 | None:intergenic |
| TGAAATATTTACTCATGGGT+GGG | 0.506663 | 3_2:-40289000 | Msa0405510:CDS |
| TCCATTGATGAGAAGGGGCT+AGG | 0.510524 | 3_2:+40288807 | None:intergenic |
| ATGCTTGCTTATTCGTCCAT+AGG | 0.517225 | 3_2:-40287887 | Msa0405510:CDS |
| TTGAAGCTCTATCTCTCCCC+CGG | 0.517737 | 3_2:+40288928 | None:intergenic |
| TTTATTTCTCATCAAACGAA+TGG | 0.522523 | 3_2:-40287991 | Msa0405510:CDS |
| ACACAAATGTATAACTCCCC+TGG | 0.530663 | 3_2:-40288881 | Msa0405510:CDS |
| GATAACATTCGAGATTATGC+AGG | 0.531827 | 3_2:-40287719 | Msa0405510:CDS |
| ATGAAATATTTACTCATGGG+TGG | 0.533610 | 3_2:-40289001 | Msa0405510:CDS |
| GAAATATTTACTCATGGGTG+GGG | 0.537789 | 3_2:-40288999 | Msa0405510:CDS |
| CAGGAGTCCATTGATGAGAA+GGG | 0.542754 | 3_2:+40288801 | None:intergenic |
| GAGCTTCAAGAAATAGTGAA+TGG | 0.546870 | 3_2:-40288914 | Msa0405510:CDS |
| ATAATTGTTGGAGACTCAAA+TGG | 0.548093 | 3_2:-40287839 | Msa0405510:CDS |
| TCAGGAGTCCATTGATGAGA+AGG | 0.551074 | 3_2:+40288800 | None:intergenic |
| AGAAAAGCAACGACTGGAGT+CGG | 0.551106 | 3_2:+40288073 | None:intergenic |
| CCATTGATGAGAAGGGGCTA+GGG | 0.552174 | 3_2:+40288808 | None:intergenic |
| TTCATATTAACCGCTACTCT+AGG | 0.552302 | 3_2:-40289148 | Msa0405510:CDS |
| TCCTAAGGATAATAGACATA+GGG | 0.556597 | 3_2:+40287658 | None:intergenic |
| CTCCTAAGGATAATAGACAT+AGG | 0.558738 | 3_2:+40287657 | None:intergenic |
| GAAAGATGTACGGTCTAATG+AGG | 0.565206 | 3_2:-40289029 | Msa0405510:CDS |
| TAAGCGCAATTGAAATTCCA+GGG | 0.565360 | 3_2:+40288864 | None:intergenic |
| GGAGAGTCAGAGTCGAAAAG+AGG | 0.572366 | 3_2:+40288094 | None:intergenic |
| TGGCTATATGGTTCGTCCGG+GGG | 0.574450 | 3_2:-40288944 | Msa0405510:CDS |
| ATAGCATGCTAAGAATAGCT+AGG | 0.576533 | 3_2:+40287951 | None:intergenic |
| TAGTGGAGGAAGACCTCCTA+AGG | 0.577052 | 3_2:+40287643 | None:intergenic |
| ACAGAAAGAAAAGCAACGAC+TGG | 0.577795 | 3_2:+40288067 | None:intergenic |
| TTGGCTATATGGTTCGTCCG+GGG | 0.582473 | 3_2:-40288945 | Msa0405510:CDS |
| ACTATGAAATATTTACTCAT+GGG | 0.584827 | 3_2:-40289004 | Msa0405510:CDS |
| CTATGTCTATTATCCTTAGG+AGG | 0.590927 | 3_2:-40287656 | Msa0405510:CDS |
| GCGCTTATATTCATCACTGT+AGG | 0.594447 | 3_2:-40288848 | Msa0405510:CDS |
| TTGAATGAGAGAAAGAAGTG+AGG | 0.599130 | 3_2:-40288120 | Msa0405510:intron |
| ATATTAACCGCTACTCTAGG+AGG | 0.609728 | 3_2:-40289145 | Msa0405510:CDS |
| GATATACCAAGAAAGATGTA+CGG | 0.625842 | 3_2:-40289039 | Msa0405510:CDS |
| ATTGTTGGAGACTCAAATGG+TGG | 0.626325 | 3_2:-40287836 | Msa0405510:CDS |
| AGGAGTCCATTGATGAGAAG+GGG | 0.632944 | 3_2:+40288802 | None:intergenic |
| AGGAATATCGAAAATTCGAG+TGG | 0.650147 | 3_2:+40288015 | None:intergenic |
| AAACATTCCTCCTAGAGTAG+CGG | 0.663526 | 3_2:+40289138 | None:intergenic |
| AAGCGCAATTGAAATTCCAG+GGG | 0.720091 | 3_2:+40288865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTTAAAATAACAATTA+AGG | - | chr3_2:40288138-40288157 | Msa0405510:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | - | chr3_2:40288451-40288470 | Msa0405510:intron | 15.0% |
| !!! | ACTTGTTAAAATAACAATTA+AGG | - | chr3_2:40288138-40288157 | Msa0405510:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | - | chr3_2:40288451-40288470 | Msa0405510:intron | 15.0% |
| !! | TACTATGAAATATTTACTCA+TGG | - | chr3_2:40287777-40287796 | Msa0405510:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | - | chr3_2:40287778-40287797 | Msa0405510:CDS | 20.0% |
| !! | TAACAAGTAAAGTTATGTAT+TGG | + | chr3_2:40288126-40288145 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | - | chr3_2:40288207-40288226 | Msa0405510:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | + | chr3_2:40288528-40288547 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | - | chr3_2:40288528-40288547 | Msa0405510:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | - | chr3_2:40288919-40288938 | Msa0405510:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | - | chr3_2:40288931-40288950 | Msa0405510:CDS | 20.0% |
| !! | TACTATGAAATATTTACTCA+TGG | - | chr3_2:40287777-40287796 | Msa0405510:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | - | chr3_2:40287778-40287797 | Msa0405510:CDS | 20.0% |
| !! | TAACAAGTAAAGTTATGTAT+TGG | + | chr3_2:40288126-40288145 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | - | chr3_2:40288207-40288226 | Msa0405510:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | + | chr3_2:40288528-40288547 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | - | chr3_2:40288528-40288547 | Msa0405510:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | - | chr3_2:40288919-40288938 | Msa0405510:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | - | chr3_2:40288931-40288950 | Msa0405510:CDS | 20.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | - | chr3_2:40288067-40288086 | Msa0405510:CDS | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | - | chr3_2:40288208-40288227 | Msa0405510:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | + | chr3_2:40288239-40288258 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | + | chr3_2:40288267-40288286 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | - | chr3_2:40288534-40288553 | Msa0405510:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | + | chr3_2:40288603-40288622 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | - | chr3_2:40288607-40288626 | Msa0405510:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | + | chr3_2:40288790-40288809 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | - | chr3_2:40288791-40288810 | Msa0405510:intron | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | - | chr3_2:40289089-40289108 | Msa0405510:CDS | 25.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | - | chr3_2:40288067-40288086 | Msa0405510:CDS | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | - | chr3_2:40288208-40288227 | Msa0405510:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | + | chr3_2:40288239-40288258 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | + | chr3_2:40288267-40288286 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | - | chr3_2:40288534-40288553 | Msa0405510:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | + | chr3_2:40288603-40288622 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | - | chr3_2:40288607-40288626 | Msa0405510:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | + | chr3_2:40288790-40288809 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | - | chr3_2:40288791-40288810 | Msa0405510:intron | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | - | chr3_2:40289089-40289108 | Msa0405510:CDS | 25.0% |
| GATATACCAAGAAAGATGTA+CGG | - | chr3_2:40287743-40287762 | Msa0405510:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | - | chr3_2:40287781-40287800 | Msa0405510:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | - | chr3_2:40287782-40287801 | Msa0405510:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | - | chr3_2:40287940-40287959 | Msa0405510:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | - | chr3_2:40287941-40287960 | Msa0405510:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | - | chr3_2:40288048-40288067 | Msa0405510:CDS | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | + | chr3_2:40288313-40288332 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | - | chr3_2:40288313-40288332 | Msa0405510:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | - | chr3_2:40288413-40288432 | Msa0405510:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | - | chr3_2:40288836-40288855 | Msa0405510:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | + | chr3_2:40288914-40288933 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | - | chr3_2:40288943-40288962 | Msa0405510:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | - | chr3_2:40288997-40289016 | Msa0405510:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | - | chr3_2:40289024-40289043 | Msa0405510:CDS | 30.0% |
| TCCTAAGGATAATAGACATA+GGG | + | chr3_2:40289127-40289146 | None:intergenic | 30.0% | |
| GATATACCAAGAAAGATGTA+CGG | - | chr3_2:40287743-40287762 | Msa0405510:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | - | chr3_2:40287781-40287800 | Msa0405510:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | - | chr3_2:40287782-40287801 | Msa0405510:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | - | chr3_2:40287940-40287959 | Msa0405510:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | - | chr3_2:40287941-40287960 | Msa0405510:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | - | chr3_2:40288048-40288067 | Msa0405510:CDS | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | + | chr3_2:40288313-40288332 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | - | chr3_2:40288313-40288332 | Msa0405510:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | - | chr3_2:40288413-40288432 | Msa0405510:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | - | chr3_2:40288836-40288855 | Msa0405510:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | + | chr3_2:40288914-40288933 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | - | chr3_2:40288943-40288962 | Msa0405510:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | - | chr3_2:40288997-40289016 | Msa0405510:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | - | chr3_2:40289024-40289043 | Msa0405510:CDS | 30.0% |
| TCCTAAGGATAATAGACATA+GGG | + | chr3_2:40289127-40289146 | None:intergenic | 30.0% | |
| TTCATATTAACCGCTACTCT+AGG | - | chr3_2:40287634-40287653 | Msa0405510:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | - | chr3_2:40287721-40287740 | Msa0405510:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | + | chr3_2:40287731-40287750 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | + | chr3_2:40287752-40287771 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | - | chr3_2:40287783-40287802 | Msa0405510:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | - | chr3_2:40287868-40287887 | Msa0405510:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | + | chr3_2:40287921-40287940 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | + | chr3_2:40287922-40287941 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | + | chr3_2:40288042-40288061 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | + | chr3_2:40288046-40288065 | None:intergenic | 35.0% | |
| ATGAATCCCGGTATGATAAA+CGG | - | chr3_2:40288180-40288199 | Msa0405510:intron | 35.0% | |
| AATGAACCCGTTTATCATAC+CGG | + | chr3_2:40288190-40288209 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | + | chr3_2:40288215-40288234 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | - | chr3_2:40288280-40288299 | Msa0405510:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | - | chr3_2:40288385-40288404 | Msa0405510:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | + | chr3_2:40288421-40288440 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | - | chr3_2:40288422-40288441 | Msa0405510:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | + | chr3_2:40288441-40288460 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | - | chr3_2:40288662-40288681 | Msa0405510:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | + | chr3_2:40288770-40288789 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | + | chr3_2:40288834-40288853 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | - | chr3_2:40288835-40288854 | Msa0405510:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | + | chr3_2:40288878-40288897 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | - | chr3_2:40288904-40288923 | Msa0405510:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | + | chr3_2:40289010-40289029 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | - | chr3_2:40289063-40289082 | Msa0405510:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | + | chr3_2:40289128-40289147 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | - | chr3_2:40289126-40289145 | Msa0405510:CDS | 35.0% | |
| TTCATATTAACCGCTACTCT+AGG | - | chr3_2:40287634-40287653 | Msa0405510:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | - | chr3_2:40287721-40287740 | Msa0405510:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | + | chr3_2:40287731-40287750 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | + | chr3_2:40287752-40287771 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | - | chr3_2:40287783-40287802 | Msa0405510:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | - | chr3_2:40287868-40287887 | Msa0405510:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | + | chr3_2:40287921-40287940 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | + | chr3_2:40287922-40287941 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | + | chr3_2:40288042-40288061 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | + | chr3_2:40288046-40288065 | None:intergenic | 35.0% | |
| ATGAATCCCGGTATGATAAA+CGG | - | chr3_2:40288180-40288199 | Msa0405510:intron | 35.0% | |
| AATGAACCCGTTTATCATAC+CGG | + | chr3_2:40288190-40288209 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | + | chr3_2:40288215-40288234 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | - | chr3_2:40288280-40288299 | Msa0405510:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | - | chr3_2:40288385-40288404 | Msa0405510:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | + | chr3_2:40288421-40288440 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | - | chr3_2:40288422-40288441 | Msa0405510:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | + | chr3_2:40288441-40288460 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | - | chr3_2:40288662-40288681 | Msa0405510:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | + | chr3_2:40288770-40288789 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | + | chr3_2:40288834-40288853 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | - | chr3_2:40288835-40288854 | Msa0405510:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | + | chr3_2:40288878-40288897 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | - | chr3_2:40288904-40288923 | Msa0405510:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | + | chr3_2:40289010-40289029 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | - | chr3_2:40289063-40289082 | Msa0405510:CDS | 35.0% | |
| CTCCTAAGGATAATAGACAT+AGG | + | chr3_2:40289128-40289147 | None:intergenic | 35.0% | |
| CTATGTCTATTATCCTTAGG+AGG | - | chr3_2:40289126-40289145 | Msa0405510:CDS | 35.0% | |
| ATATTAACCGCTACTCTAGG+AGG | - | chr3_2:40287637-40287656 | Msa0405510:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | + | chr3_2:40287647-40287666 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | - | chr3_2:40287753-40287772 | Msa0405510:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | - | chr3_2:40287808-40287827 | Msa0405510:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | - | chr3_2:40287818-40287837 | Msa0405510:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | - | chr3_2:40287826-40287845 | Msa0405510:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | - | chr3_2:40287901-40287920 | Msa0405510:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | + | chr3_2:40287920-40287939 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | - | chr3_2:40287934-40287953 | Msa0405510:CDS | 40.0% | |
| ! | AGTTATGTATTGGTCCGAGT+GGG | + | chr3_2:40288116-40288135 | None:intergenic | 40.0% |
| ! | AAGTTATGTATTGGTCCGAG+TGG | + | chr3_2:40288117-40288136 | None:intergenic | 40.0% |
| AATTAAGGTGAAGCAGAGTC+AGG | - | chr3_2:40288153-40288172 | Msa0405510:intron | 40.0% | |
| TGAATCCCGGTATGATAAAC+GGG | - | chr3_2:40288181-40288200 | Msa0405510:intron | 40.0% | |
| ATGAACCCGTTTATCATACC+GGG | + | chr3_2:40288189-40288208 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | + | chr3_2:40288344-40288363 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | + | chr3_2:40288362-40288381 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | + | chr3_2:40288363-40288382 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | - | chr3_2:40288474-40288493 | Msa0405510:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | - | chr3_2:40288493-40288512 | Msa0405510:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | - | chr3_2:40288499-40288518 | Msa0405510:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | + | chr3_2:40288503-40288522 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | + | chr3_2:40288718-40288737 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | + | chr3_2:40288879-40288898 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | - | chr3_2:40288895-40288914 | Msa0405510:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | - | chr3_2:40288946-40288965 | Msa0405510:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | - | chr3_2:40289036-40289055 | Msa0405510:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | + | chr3_2:40289105-40289124 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | - | chr3_2:40289123-40289142 | Msa0405510:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | + | chr3_2:40289159-40289178 | None:intergenic | 40.0% | |
| ATATTAACCGCTACTCTAGG+AGG | - | chr3_2:40287637-40287656 | Msa0405510:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | + | chr3_2:40287647-40287666 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | - | chr3_2:40287753-40287772 | Msa0405510:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | - | chr3_2:40287808-40287827 | Msa0405510:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | - | chr3_2:40287818-40287837 | Msa0405510:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | - | chr3_2:40287826-40287845 | Msa0405510:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | - | chr3_2:40287901-40287920 | Msa0405510:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | + | chr3_2:40287920-40287939 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | - | chr3_2:40287934-40287953 | Msa0405510:CDS | 40.0% | |
| ! | AGTTATGTATTGGTCCGAGT+GGG | + | chr3_2:40288116-40288135 | None:intergenic | 40.0% |
| ! | AAGTTATGTATTGGTCCGAG+TGG | + | chr3_2:40288117-40288136 | None:intergenic | 40.0% |
| AATTAAGGTGAAGCAGAGTC+AGG | - | chr3_2:40288153-40288172 | Msa0405510:intron | 40.0% | |
| TGAATCCCGGTATGATAAAC+GGG | - | chr3_2:40288181-40288200 | Msa0405510:intron | 40.0% | |
| ATGAACCCGTTTATCATACC+GGG | + | chr3_2:40288189-40288208 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | + | chr3_2:40288344-40288363 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | + | chr3_2:40288362-40288381 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | + | chr3_2:40288363-40288382 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | - | chr3_2:40288474-40288493 | Msa0405510:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | - | chr3_2:40288493-40288512 | Msa0405510:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | - | chr3_2:40288499-40288518 | Msa0405510:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | + | chr3_2:40288503-40288522 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | + | chr3_2:40288718-40288737 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | + | chr3_2:40288879-40288898 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | - | chr3_2:40288895-40288914 | Msa0405510:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | - | chr3_2:40288946-40288965 | Msa0405510:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | - | chr3_2:40289036-40289055 | Msa0405510:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | + | chr3_2:40289105-40289124 | None:intergenic | 40.0% | |
| GCCCTATGTCTATTATCCTT+AGG | - | chr3_2:40289123-40289142 | Msa0405510:CDS | 40.0% | |
| TTTCCGAAAAAACCTGCTAG+TGG | + | chr3_2:40289159-40289178 | None:intergenic | 40.0% | |
| TCTTGGCTATATGGTTCGTC+CGG | - | chr3_2:40287835-40287854 | Msa0405510:CDS | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | + | chr3_2:40287983-40288002 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | + | chr3_2:40287984-40288003 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | + | chr3_2:40287985-40288004 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | - | chr3_2:40287994-40288013 | Msa0405510:CDS | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | - | chr3_2:40288001-40288020 | Msa0405510:CDS | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | - | chr3_2:40288099-40288118 | Msa0405510:CDS | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | - | chr3_2:40288168-40288187 | Msa0405510:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | - | chr3_2:40288332-40288351 | Msa0405510:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | + | chr3_2:40288487-40288506 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | - | chr3_2:40288552-40288571 | Msa0405510:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | - | chr3_2:40288556-40288575 | Msa0405510:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | + | chr3_2:40288635-40288654 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | - | chr3_2:40288637-40288656 | Msa0405510:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | + | chr3_2:40288712-40288731 | None:intergenic | 45.0% | |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | - | chr3_2:40289153-40289172 | Msa0405510:CDS | 45.0% |
| TCTTGGCTATATGGTTCGTC+CGG | - | chr3_2:40287835-40287854 | Msa0405510:CDS | 45.0% | |
| AGGAGTCCATTGATGAGAAG+GGG | + | chr3_2:40287983-40288002 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+GGG | + | chr3_2:40287984-40288003 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTGATGAGA+AGG | + | chr3_2:40287985-40288004 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | - | chr3_2:40287994-40288013 | Msa0405510:CDS | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | - | chr3_2:40288001-40288020 | Msa0405510:CDS | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | - | chr3_2:40288099-40288118 | Msa0405510:CDS | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | - | chr3_2:40288168-40288187 | Msa0405510:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | - | chr3_2:40288332-40288351 | Msa0405510:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | + | chr3_2:40288487-40288506 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | - | chr3_2:40288552-40288571 | Msa0405510:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | - | chr3_2:40288556-40288575 | Msa0405510:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | + | chr3_2:40288635-40288654 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | - | chr3_2:40288637-40288656 | Msa0405510:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | + | chr3_2:40288712-40288731 | None:intergenic | 45.0% | |
| !!! | CCTCCACTAGCAGGTTTTTT+CGG | - | chr3_2:40289153-40289172 | Msa0405510:CDS | 45.0% |
| TGGGGCAAGCTCTTCTATTC+TGG | - | chr3_2:40287801-40287820 | Msa0405510:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | - | chr3_2:40287836-40287855 | Msa0405510:CDS | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | - | chr3_2:40287837-40287856 | Msa0405510:CDS | 50.0% | |
| TTGAAGCTCTATCTCTCCCC+CGG | + | chr3_2:40287857-40287876 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | + | chr3_2:40287977-40287996 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | + | chr3_2:40287978-40287997 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | + | chr3_2:40288003-40288022 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | + | chr3_2:40288433-40288452 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | + | chr3_2:40288691-40288710 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | + | chr3_2:40289142-40289161 | None:intergenic | 50.0% | |
| CCGAAAAAACCTGCTAGTGG+AGG | + | chr3_2:40289156-40289175 | None:intergenic | 50.0% | |
| TGGGGCAAGCTCTTCTATTC+TGG | - | chr3_2:40287801-40287820 | Msa0405510:CDS | 50.0% | |
| CTTGGCTATATGGTTCGTCC+GGG | - | chr3_2:40287836-40287855 | Msa0405510:CDS | 50.0% | |
| TTGGCTATATGGTTCGTCCG+GGG | - | chr3_2:40287837-40287856 | Msa0405510:CDS | 50.0% | |
| TTGAAGCTCTATCTCTCCCC+CGG | + | chr3_2:40287857-40287876 | None:intergenic | 50.0% | |
| CCATTGATGAGAAGGGGCTA+GGG | + | chr3_2:40287977-40287996 | None:intergenic | 50.0% | |
| TCCATTGATGAGAAGGGGCT+AGG | + | chr3_2:40287978-40287997 | None:intergenic | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | + | chr3_2:40288003-40288022 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | + | chr3_2:40288433-40288452 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | + | chr3_2:40288691-40288710 | None:intergenic | 50.0% | |
| TAGTGGAGGAAGACCTCCTA+AGG | + | chr3_2:40289142-40289161 | None:intergenic | 50.0% | |
| CCGAAAAAACCTGCTAGTGG+AGG | + | chr3_2:40289156-40289175 | None:intergenic | 50.0% | |
| TGGCTATATGGTTCGTCCGG+GGG | - | chr3_2:40287838-40287857 | Msa0405510:CDS | 55.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | - | chr3_2:40287974-40287993 | Msa0405510:CDS | 55.0% | |
| TGGCTATATGGTTCGTCCGG+GGG | - | chr3_2:40287838-40287857 | Msa0405510:CDS | 55.0% | |
| CCCTAGCCCCTTCTCATCAA+TGG | - | chr3_2:40287974-40287993 | Msa0405510:CDS | 55.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | - | chr3_2:40289144-40289163 | Msa0405510:CDS | 60.0% | |
| GGAGGTCTTCCTCCACTAGC+AGG | - | chr3_2:40289144-40289163 | Msa0405510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 40287610 | 40289194 | 40287610 | ID=Msa0405510;Name=Msa0405510 |
| chr3_2 | mRNA | 40287610 | 40289194 | 40287610 | ID=Msa0405510-mRNA-1;Parent=Msa0405510;Name=Msa0405510-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.5|1|1|2|0|305 |
| chr3_2 | exon | 40288799 | 40289194 | 40288799 | ID=Msa0405510-mRNA-1:exon:7829;Parent=Msa0405510-mRNA-1 |
| chr3_2 | exon | 40287610 | 40288131 | 40287610 | ID=Msa0405510-mRNA-1:exon:7828;Parent=Msa0405510-mRNA-1 |
| chr3_2 | CDS | 40288799 | 40289194 | 40288799 | ID=Msa0405510-mRNA-1:cds;Parent=Msa0405510-mRNA-1 |
| chr3_2 | CDS | 40287610 | 40288131 | 40287610 | ID=Msa0405510-mRNA-1:cds;Parent=Msa0405510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
