AlfalfaGEDB | Msa1354900

M. sativa cultivar zhongmu-4 / Msa1354900

KEGG: K02111|K02132
GO: -
PFAM: PF02874.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354900	YP_009141617.1	100.000	510	0	0	1	510	1	510	0.0	1021

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354900	sp\|Q9BBS3\|ATPA_LOTJA	97.255	510	14	0	1	510	1	510	0.0	1001

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354900	A0A1J0I0I3	100.000	510	0	0	1	510	1	510	0.0	1021

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001040	Msa1354900	0.803190	3.924314e-49	-8.615850e-47
Msa0002690	Msa1354900	0.831352	1.752264e-55	-8.615850e-47
Msa0002700	Msa1354900	0.829750	4.321990e-55	-8.615850e-47
Msa0003370	Msa1354900	0.813203	2.882320e-51	-8.615850e-47
Msa0016830	Msa1354900	0.817824	2.699030e-52	-8.615850e-47
Msa0018010	Msa1354900	0.810906	9.128712e-51	-8.615850e-47
Msa0021570	Msa1354900	0.831947	1.249978e-55	-8.615850e-47
Msa0028410	Msa1354900	0.841343	5.032613e-58	-8.615850e-47
Msa0028450	Msa1354900	0.851000	1.180071e-60	-8.615850e-47
Msa0028940	Msa1354900	0.819777	9.721044e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354900	MtrunA17_Chr4g0015651	98.821	509	6	0	1	509	1	509	0.0	1004
Msa1354900	MtrunA17_Chr4g0016741	98.821	509	6	0	1	509	1	509	0.0	1004
Msa1354900	MtrunA17_CPg0492941	98.821	509	6	0	1	509	1	509	0.0	1004
Msa1354900	MtrunA17_MTg0490471	61.310	504	175	5	3	492	4	501	0.0	601
Msa1354900	MtrunA17_Chr2g0278821	91.538	260	22	0	221	480	2	261	4.68e-173	489
Msa1354900	MtrunA17_Chr2g0286451	91.803	183	15	0	79	261	7	189	4.91e-115	338
Msa1354900	MtrunA17_Chr4g0040631	96.748	123	4	0	1	123	1	123	1.09e-74	232
Msa1354900	MtrunA17_Chr4g0061471	89.333	75	8	0	100	174	1	75	1.92e-39	137
Msa1354900	MtrunA17_Chr1g0211291	30.363	303	191	5	87	371	84	384	5.22e-29	119
Msa1354900	MtrunA17_Chr7g0250051	30.132	302	192	5	87	371	83	382	1.82e-28	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354900	ATCG00120.1	93.294	507	34	0	1	507	1	507	0.0	956
Msa1354900	AT2G07698.1	57.916	499	196	3	5	492	276	771	0.0	577
Msa1354900	ATMG01190.1	57.715	499	197	3	5	492	6	501	0.0	572
Msa1354900	AT4G38510.1	30.464	302	191	5	87	371	83	382	8.56e-30	122
Msa1354900	AT4G38510.3	30.464	302	191	5	87	371	83	382	8.56e-30	122
Msa1354900	AT4G38510.4	30.464	302	191	5	87	371	83	382	8.56e-30	122
Msa1354900	AT4G38510.2	30.464	302	191	5	87	371	83	382	8.56e-30	122
Msa1354900	AT4G38510.5	30.464	302	191	5	87	371	90	389	8.84e-30	122
Msa1354900	AT1G76030.1	30.464	302	191	5	87	371	82	381	7.41e-29	119
Msa1354900	AT1G20260.1	29.703	303	193	5	87	371	82	382	4.64e-28	117

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Find 119 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATGAAACAGGTAGC+TGG	0.558354	tig0014543:-583523	Msa1354900:CDS
AAATATTTGGCCATCTGTAA+TGG	0.434228	tig0014543:+583633	None:intergenic
AAATGTTGGTGTTGTATTAA+TGG	0.258988	tig0014543:-584433	Msa1354900:CDS
AAATTTCAGCTTCGGAATCT+CGG	0.492871	tig0014543:-584281	Msa1354900:CDS
AACTACTTTACAAGAAAGAG+GGG	0.635218	tig0014543:-584013	Msa1354900:CDS
AAGCTGAAACATCTCCTGAT+TGG	0.409535	tig0014543:+583677	None:intergenic
AATCAGACCAGCTATTAATG+TGG	0.625394	tig0014543:-583584	Msa1354900:CDS
AATGGAGTACACTATTATAG+TGG	0.544433	tig0014543:-583989	Msa1354900:CDS
AATGTAATTTCCATTACAGA+TGG	0.557336	tig0014543:-583643	Msa1354900:CDS
AATGTTGGTGTTGTATTAAT+GGG	0.391664	tig0014543:-584432	Msa1354900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATTGCTCAATACGTTCA+CGG	+	tig0014543:583173-583192	None:intergenic	30.0%
TGAATTAGTCGAATTTGAAG+AGG	-	tig0014543:583284-583303	Msa1354900:CDS	30.0%
GAATTAGTCGAATTTGAAGA+GGG	-	tig0014543:583285-583304	Msa1354900:CDS	30.0%
TTGATTCTATGATCCCTATA+GGG	-	tig0014543:583592-583611	Msa1354900:CDS	30.0%
AGATACAATTCTCAATCAAC+AGG	-	tig0014543:583674-583693	Msa1354900:CDS	30.0%
GATACAATTCTCAATCAACA+GGG	-	tig0014543:583675-583694	Msa1354900:CDS	30.0%
GTAACTACTTTACAAGAAAG+AGG	-	tig0014543:583759-583778	Msa1354900:CDS	30.0%
AACTACTTTACAAGAAAGAG+GGG	-	tig0014543:583761-583780	Msa1354900:CDS	30.0%
AATGGAGTACACTATTATAG+TGG	-	tig0014543:583785-583804	Msa1354900:CDS	30.0%
TTCGTAATAGAAGAGACATT+TGG	+	tig0014543:583950-583969	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0014543	gene	583132	584664	583132	ID=Msa1354900;Name=Msa1354900
tig0014543	mRNA	583132	584664	583132	ID=Msa1354900-mRNA-1;Parent=Msa1354900;Name=Msa1354900-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|510
tig0014543	exon	583132	584664	583132	ID=Msa1354900-mRNA-1:exon:9290;Parent=Msa1354900-mRNA-1
tig0014543	CDS	583132	584664	583132	ID=Msa1354900-mRNA-1:cds;Parent=Msa1354900-mRNA-1

Gene Sequence

>Msa1354900

ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTCGAATTTGAAGAGGGTACTGTAGGCATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTCACTGTGGAAGAACAGATAATAACTATTTATACTGGAACGAATGGTTATCTTGATTCATTAGAAATTGATCAGGTACGTAAATTTCTCGTTGAGTTAAGGGCTTATTTAAAAACGAATAAACCTAAATTTAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTTCAGGAACAAGTAGAAAAAAATTGA

Protein sequence

>Msa1354900

MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTVGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIDQVRKFLVELRAYLKTNKPKFNEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN*