AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061310 MtrunA17_Chr7g0239041 91.603 131 6 1 1 126 62 192 4.68e-70 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061310 AT5G02160.1 84.810 79 12 0 48 126 50 128 3.36e-46 146

Find 51 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACACTAAACTCTTATT+TGG 0.131404 7_2:-50562127 Msa1061310:CDS
AGTTTCTCGCGTGCCCTATT+CGG 0.285828 7_2:-50560464 Msa1061310:three_prime_UTR
CTCACTTTCTTCAATTTGTT+TGG 0.288692 7_2:-50562224 Msa1061310:five_prime_UTR
TATCTTGTTGCTGGTGCTAT+TGG 0.295597 7_2:-50562007 Msa1061310:CDS
TATATAATCTAAACTGTATA+AGG 0.298080 7_2:-50560374 Msa1061310:three_prime_UTR
GGCACTATTTATCTTGTTGC+TGG 0.299445 7_2:-50562016 Msa1061310:CDS
GTGATGGAGCAGGGTTTGTT+AGG 0.314720 7_2:-50560633 Msa1061310:CDS
AAATAAGAGTTTAGTGTTGT+TGG 0.324277 7_2:+50562129 None:intergenic
TACGGGATGTTTATTCCATT+CGG 0.360070 7_2:-50560399 Msa1061310:three_prime_UTR
GCTATTGGAATTGCTCTTGT+TGG 0.368974 7_2:-50561992 Msa1061310:CDS
AGGGCACGCGAGAAACTTAT+AGG 0.370338 7_2:+50560470 None:intergenic
TTGTGCTCGTTGTGATGGTT+TGG 0.405035 7_2:-50560554 Msa1061310:CDS
AAGGCGCGTGAGAAATTTAT+AGG 0.405152 7_2:-50560355 Msa1061310:three_prime_UTR
AGCATTTCTATTTGTCAACT+TGG 0.409660 7_2:+50560521 None:intergenic
AACCCTGCTCCATCACAATC+AGG 0.417979 7_2:+50560640 None:intergenic
ATTGGGAATGATTGTGTTCA+AGG 0.420585 7_2:+50562162 None:intergenic
GTGATGAACTTCATAATGTA+AGG 0.425525 7_2:-50560238 Msa1061310:three_prime_UTR
TCAGTTGTTGTTTCAGCAGT+TGG 0.426749 7_2:-50562055 Msa1061310:CDS
TGTGCTCGTTGTGATGGTTT+GGG 0.434742 7_2:-50560553 Msa1061310:CDS
TTGTTATGTTATTGTTGGAT+TGG 0.444344 7_2:+50562285 None:intergenic
AACACTAAACTCTTATTTGG+AGG 0.444395 7_2:-50562124 Msa1061310:CDS
TCTTTACGTGAGAAGATGAT+AGG 0.453999 7_2:+50561959 None:intergenic
CAGGGTTTGTTAGGAAAGGT+GGG 0.459410 7_2:-50560624 Msa1061310:CDS
GCAGGGTTTGTTAGGAAAGG+TGG 0.460825 7_2:-50560625 Msa1061310:CDS
ACATTACATTACACATGAAA+GGG 0.476545 7_2:+50560304 None:intergenic
GAGAGCAAATGCAGCAAGAA+AGG 0.478276 7_2:-50560593 Msa1061310:CDS
GTTGTTGGAAATTGTAACAT+TGG 0.483393 7_2:+50562144 None:intergenic
TACATTACATTACACATGAA+AGG 0.489481 7_2:+50560303 None:intergenic
GGGCACGCGAGAAACTTATA+GGG 0.499519 7_2:+50560471 None:intergenic
CTTCATAATGTAAGGAGGGA+AGG 0.511172 7_2:-50560230 Msa1061310:three_prime_UTR
TGCCCTGATTGTGATGGAGC+AGG 0.517909 7_2:-50560643 Msa1061310:CDS
TTGTTGGAAATTGTAACATT+GGG 0.522805 7_2:+50562145 None:intergenic
ATTGTTTGTGCTCGTTGTGA+TGG 0.530028 7_2:-50560559 Msa1061310:CDS
CATTACACATGAAAGGGAAA+AGG 0.532811 7_2:+50560310 None:intergenic
TTCATAATGTAAGGAGGGAA+GGG 0.545642 7_2:-50560229 Msa1061310:three_prime_UTR
GGAGCAGGGTTTGTTAGGAA+AGG 0.545979 7_2:-50560628 Msa1061310:CDS
AAAGAAAGAAATGCAAGAGA+AGG 0.550133 7_2:+50560261 None:intergenic
AATGATTGTGTTCAAGGTCA+TGG 0.560862 7_2:+50562168 None:intergenic
TTATAGGGTGGGAAAAGTAA+TGG 0.563130 7_2:+50560486 None:intergenic
TTTAGATTATATAATCCGAA+TGG 0.574440 7_2:+50560384 None:intergenic
ATGAACTTCATAATGTAAGG+AGG 0.586213 7_2:-50560235 Msa1061310:three_prime_UTR
GTTGGAGATGTATCTTCTGA+TGG 0.593310 7_2:-50562037 Msa1061310:CDS
CACGCGAGAAACTTATAGGG+TGG 0.600925 7_2:+50560474 None:intergenic
ACCCTGCTCCATCACAATCA+GGG 0.608104 7_2:+50560641 None:intergenic
GCCCTGATTGTGATGGAGCA+GGG 0.608764 7_2:-50560642 Msa1061310:CDS
ACGCGAGAAACTTATAGGGT+GGG 0.609001 7_2:+50560475 None:intergenic
ATTACATTGTATTAGAAACA+TGG 0.624195 7_2:-50562194 Msa1061310:exon
TGAACTTCATAATGTAAGGA+GGG 0.625969 7_2:-50560234 Msa1061310:three_prime_UTR
TTATAGGATGAGAAAAGAAG+CGG 0.647194 7_2:-50560339 Msa1061310:three_prime_UTR
ATCAGATGCCCTGATTGTGA+TGG 0.647435 7_2:-50560649 Msa1061310:intron
AGGGTTTGTTAGGAAAGGTG+GGG 0.670666 7_2:-50560623 Msa1061310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAAATATTTATATT+GGG + chr7_2:50561139-50561158 None:intergenic 0.0%
!! AAAATTATAAATATTTATAT+TGG + chr7_2:50561140-50561159 None:intergenic 0.0%
!! AAATTATAAATATTTATATT+GGG + chr7_2:50561139-50561158 None:intergenic 0.0%
!! AAAATTATAAATATTTATAT+TGG + chr7_2:50561140-50561159 None:intergenic 0.0%
!! TAAAAAATAAAATCTGATTT+CGG - chr7_2:50560964-50560983 Msa1061310:intron 10.0%
!! AAAAATAGGTTTATAATTAT+TGG + chr7_2:50561567-50561586 None:intergenic 10.0%
!! TAAAAAATAAAATCTGATTT+CGG - chr7_2:50560964-50560983 Msa1061310:intron 10.0%
!! AAAAATAGGTTTATAATTAT+TGG + chr7_2:50561567-50561586 None:intergenic 10.0%
!!! TTTTTTTGTTATGTTATTGT+TGG + chr7_2:50560143-50560162 None:intergenic 15.0%
!! AATAATAATCTCAATAATAG+TGG - chr7_2:50561164-50561183 Msa1061310:intron 15.0%
!!! TAATTATAAACCTATTTTTG+TGG - chr7_2:50561568-50561587 Msa1061310:intron 15.0%
!! TATATAATCTAAACTGTATA+AGG - chr7_2:50562046-50562065 Msa1061310:CDS 15.0%
!!! TTTTTTTGTTATGTTATTGT+TGG + chr7_2:50560143-50560162 None:intergenic 15.0%
!! AATAATAATCTCAATAATAG+TGG - chr7_2:50561164-50561183 Msa1061310:intron 15.0%
!!! TAATTATAAACCTATTTTTG+TGG - chr7_2:50561568-50561587 Msa1061310:intron 15.0%
!! TATATAATCTAAACTGTATA+AGG - chr7_2:50562046-50562065 Msa1061310:CDS 15.0%
!! ATTACATTGTATTAGAAACA+TGG - chr7_2:50560226-50560245 Msa1061310:three_prime_UTR 20.0%
!!! ATATTATGCTTTTTGATAAG+AGG - chr7_2:50560587-50560606 Msa1061310:CDS 20.0%
!!! TTCTAAGAGAAATTTTGTAT+AGG - chr7_2:50560686-50560705 Msa1061310:intron 20.0%
!!! AAATTTTGTATAGGCATTTT+TGG - chr7_2:50560695-50560714 Msa1061310:intron 20.0%
!! AATCTTAAAACCACAAAAAT+AGG + chr7_2:50561581-50561600 None:intergenic 20.0%
!!! TTTTTTCATTGATTCTTGTT+TGG - chr7_2:50561670-50561689 Msa1061310:intron 20.0%
!!! ATAGAAATGCTTTTTTCTTT+TGG - chr7_2:50561911-50561930 Msa1061310:intron 20.0%
!! TTTAGATTATATAATCCGAA+TGG + chr7_2:50562039-50562058 None:intergenic 20.0%
!! AAGGAGAAAAAAAACATATA+TGG + chr7_2:50562309-50562328 None:intergenic 20.0%
!! ATTACATTGTATTAGAAACA+TGG - chr7_2:50560226-50560245 Msa1061310:three_prime_UTR 20.0%
!!! ATATTATGCTTTTTGATAAG+AGG - chr7_2:50560587-50560606 Msa1061310:CDS 20.0%
!!! TTCTAAGAGAAATTTTGTAT+AGG - chr7_2:50560686-50560705 Msa1061310:intron 20.0%
!!! AAATTTTGTATAGGCATTTT+TGG - chr7_2:50560695-50560714 Msa1061310:intron 20.0%
!! AATCTTAAAACCACAAAAAT+AGG + chr7_2:50561581-50561600 None:intergenic 20.0%
!!! TTTTTTCATTGATTCTTGTT+TGG - chr7_2:50561670-50561689 Msa1061310:intron 20.0%
!!! ATAGAAATGCTTTTTTCTTT+TGG - chr7_2:50561911-50561930 Msa1061310:intron 20.0%
!! TTTAGATTATATAATCCGAA+TGG + chr7_2:50562039-50562058 None:intergenic 20.0%
!! AAGGAGAAAAAAAACATATA+TGG + chr7_2:50562309-50562328 None:intergenic 20.0%
! TTGTTATGTTATTGTTGGAT+TGG + chr7_2:50560138-50560157 None:intergenic 25.0%
! TTGTTGGAAATTGTAACATT+GGG + chr7_2:50560278-50560297 None:intergenic 25.0%
! AAATAAGAGTTTAGTGTTGT+TGG + chr7_2:50560294-50560313 None:intergenic 25.0%
! AACAACACTAAACTCTTATT+TGG - chr7_2:50560293-50560312 Msa1061310:three_prime_UTR 25.0%
!!! CATCGTTATTTTCATTTTCA+TGG - chr7_2:50560498-50560517 Msa1061310:three_prime_UTR 25.0%
!! ATTCTGAGAAAATTAGAGAT+AGG + chr7_2:50560782-50560801 None:intergenic 25.0%
! GGTAAAACTATACTTATCTA+TGG + chr7_2:50560898-50560917 None:intergenic 25.0%
!!! TAAGTATAGTTTTACCTTGA+CGG - chr7_2:50560902-50560921 Msa1061310:intron 25.0%
!!! AAGAGAATTGTTTTTTTTCG+TGG + chr7_2:50561106-50561125 None:intergenic 25.0%
!!! ACCTAGTTTTTTAATCTACT+TGG - chr7_2:50561609-50561628 Msa1061310:intron 25.0%
!!! CCTAGTTTTTTAATCTACTT+GGG - chr7_2:50561610-50561629 Msa1061310:intron 25.0%
! TGCACTTGAAATAAAAATCT+AGG + chr7_2:50561646-50561665 None:intergenic 25.0%
! ACATCATTAACAAACAACAA+AGG + chr7_2:50561734-50561753 None:intergenic 25.0%
!! CAGATTTTTAAATCCGAATA+GGG + chr7_2:50561972-50561991 None:intergenic 25.0%
!! TCAGATTTTTAAATCCGAAT+AGG + chr7_2:50561973-50561992 None:intergenic 25.0%
!! GAAATATTTCAACGTGTTTT+TGG - chr7_2:50561991-50562010 Msa1061310:CDS 25.0%
! ACATTACATTACACATGAAA+GGG + chr7_2:50562119-50562138 None:intergenic 25.0%
! TACATTACATTACACATGAA+AGG + chr7_2:50562120-50562139 None:intergenic 25.0%
! TTGTTATGTTATTGTTGGAT+TGG + chr7_2:50560138-50560157 None:intergenic 25.0%
! TTGTTGGAAATTGTAACATT+GGG + chr7_2:50560278-50560297 None:intergenic 25.0%
! AAATAAGAGTTTAGTGTTGT+TGG + chr7_2:50560294-50560313 None:intergenic 25.0%
! AACAACACTAAACTCTTATT+TGG - chr7_2:50560293-50560312 Msa1061310:three_prime_UTR 25.0%
!!! CATCGTTATTTTCATTTTCA+TGG - chr7_2:50560498-50560517 Msa1061310:three_prime_UTR 25.0%
!! ATTCTGAGAAAATTAGAGAT+AGG + chr7_2:50560782-50560801 None:intergenic 25.0%
! GGTAAAACTATACTTATCTA+TGG + chr7_2:50560898-50560917 None:intergenic 25.0%
!!! TAAGTATAGTTTTACCTTGA+CGG - chr7_2:50560902-50560921 Msa1061310:intron 25.0%
!!! AAGAGAATTGTTTTTTTTCG+TGG + chr7_2:50561106-50561125 None:intergenic 25.0%
!!! ACCTAGTTTTTTAATCTACT+TGG - chr7_2:50561609-50561628 Msa1061310:intron 25.0%
!!! CCTAGTTTTTTAATCTACTT+GGG - chr7_2:50561610-50561629 Msa1061310:intron 25.0%
! TGCACTTGAAATAAAAATCT+AGG + chr7_2:50561646-50561665 None:intergenic 25.0%
! ACATCATTAACAAACAACAA+AGG + chr7_2:50561734-50561753 None:intergenic 25.0%
!! CAGATTTTTAAATCCGAATA+GGG + chr7_2:50561972-50561991 None:intergenic 25.0%
!! TCAGATTTTTAAATCCGAAT+AGG + chr7_2:50561973-50561992 None:intergenic 25.0%
!! GAAATATTTCAACGTGTTTT+TGG - chr7_2:50561991-50562010 Msa1061310:CDS 25.0%
! ACATTACATTACACATGAAA+GGG + chr7_2:50562119-50562138 None:intergenic 25.0%
! TACATTACATTACACATGAA+AGG + chr7_2:50562120-50562139 None:intergenic 25.0%
! CTCACTTTCTTCAATTTGTT+TGG - chr7_2:50560196-50560215 Msa1061310:three_prime_UTR 30.0%
GTTGTTGGAAATTGTAACAT+TGG + chr7_2:50560279-50560298 None:intergenic 30.0%
! AACACTAAACTCTTATTTGG+AGG - chr7_2:50560296-50560315 Msa1061310:three_prime_UTR 30.0%
TGAACAAATTACACTTGCAA+TGG - chr7_2:50560628-50560647 Msa1061310:CDS 30.0%
TCAATAAAAAACATCCGTCA+AGG + chr7_2:50560919-50560938 None:intergenic 30.0%
TTAATTGAACTTTGCTCAGT+TGG - chr7_2:50561031-50561050 Msa1061310:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr7_2:50561058-50561077 Msa1061310:intron 30.0%
TCAATAATAGTGGTTGAAAC+TGG - chr7_2:50561174-50561193 Msa1061310:intron 30.0%
TGATAATTGGCAATGATGAT+TGG - chr7_2:50561267-50561286 Msa1061310:intron 30.0%
!!! GTGGTCATAGTAGTTTTAAA+TGG - chr7_2:50561359-50561378 Msa1061310:intron 30.0%
CCCAAGTAGATTAAAAAACT+AGG + chr7_2:50561613-50561632 None:intergenic 30.0%
!! TCATTGATTCTTGTTTGGAA+TGG - chr7_2:50561675-50561694 Msa1061310:intron 30.0%
AGCATTTCTATTTGTCAACT+TGG + chr7_2:50561902-50561921 None:intergenic 30.0%
!!! ATATTTCAACGTGTTTTTGG+AGG - chr7_2:50561994-50562013 Msa1061310:CDS 30.0%
TTATAGGATGAGAAAAGAAG+CGG - chr7_2:50562081-50562100 Msa1061310:CDS 30.0%
AAAGAAAGAAATGCAAGAGA+AGG + chr7_2:50562162-50562181 None:intergenic 30.0%
GTGATGAACTTCATAATGTA+AGG - chr7_2:50562182-50562201 Msa1061310:exon 30.0%
ATGAACTTCATAATGTAAGG+AGG - chr7_2:50562185-50562204 Msa1061310:exon 30.0%
TGAACTTCATAATGTAAGGA+GGG - chr7_2:50562186-50562205 Msa1061310:exon 30.0%
! CTCACTTTCTTCAATTTGTT+TGG - chr7_2:50560196-50560215 Msa1061310:three_prime_UTR 30.0%
GTTGTTGGAAATTGTAACAT+TGG + chr7_2:50560279-50560298 None:intergenic 30.0%
! AACACTAAACTCTTATTTGG+AGG - chr7_2:50560296-50560315 Msa1061310:three_prime_UTR 30.0%
TGAACAAATTACACTTGCAA+TGG - chr7_2:50560628-50560647 Msa1061310:CDS 30.0%
TCAATAAAAAACATCCGTCA+AGG + chr7_2:50560919-50560938 None:intergenic 30.0%
TTAATTGAACTTTGCTCAGT+TGG - chr7_2:50561031-50561050 Msa1061310:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr7_2:50561058-50561077 Msa1061310:intron 30.0%
TCAATAATAGTGGTTGAAAC+TGG - chr7_2:50561174-50561193 Msa1061310:intron 30.0%
TGATAATTGGCAATGATGAT+TGG - chr7_2:50561267-50561286 Msa1061310:intron 30.0%
!!! GTGGTCATAGTAGTTTTAAA+TGG - chr7_2:50561359-50561378 Msa1061310:intron 30.0%
CCCAAGTAGATTAAAAAACT+AGG + chr7_2:50561613-50561632 None:intergenic 30.0%
!! TCATTGATTCTTGTTTGGAA+TGG - chr7_2:50561675-50561694 Msa1061310:intron 30.0%
AGCATTTCTATTTGTCAACT+TGG + chr7_2:50561902-50561921 None:intergenic 30.0%
!!! ATATTTCAACGTGTTTTTGG+AGG - chr7_2:50561994-50562013 Msa1061310:CDS 30.0%
TTATAGGATGAGAAAAGAAG+CGG - chr7_2:50562081-50562100 Msa1061310:CDS 30.0%
AAAGAAAGAAATGCAAGAGA+AGG + chr7_2:50562162-50562181 None:intergenic 30.0%
GTGATGAACTTCATAATGTA+AGG - chr7_2:50562182-50562201 Msa1061310:exon 30.0%
ATGAACTTCATAATGTAAGG+AGG - chr7_2:50562185-50562204 Msa1061310:exon 30.0%
TGAACTTCATAATGTAAGGA+GGG - chr7_2:50562186-50562205 Msa1061310:exon 30.0%
AATGATTGTGTTCAAGGTCA+TGG + chr7_2:50560255-50560274 None:intergenic 35.0%
ATTGGGAATGATTGTGTTCA+AGG + chr7_2:50560261-50560280 None:intergenic 35.0%
TCTTTACGTGAGAAGATGAT+AGG + chr7_2:50560464-50560483 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - chr7_2:50561063-50561082 Msa1061310:intron 35.0%
ACAATGATCGGAGTGATAAT+TGG - chr7_2:50561254-50561273 Msa1061310:intron 35.0%
TAATTGGCAATGATGATTGG+CGG - chr7_2:50561270-50561289 Msa1061310:intron 35.0%
!! GTTTTAAATGGTGATCACAG+TGG - chr7_2:50561371-50561390 Msa1061310:intron 35.0%
TAGAGGTGATCTAAGAAAGT+TGG - chr7_2:50561437-50561456 Msa1061310:intron 35.0%
ATCTAAGAAAGTTGGAGTGA+TGG - chr7_2:50561445-50561464 Msa1061310:intron 35.0%
TTATAGGGTGGGAAAAGTAA+TGG + chr7_2:50561937-50561956 None:intergenic 35.0%
!!! CGTGTTTTTGGAGGTTTTTA+CGG - chr7_2:50562003-50562022 Msa1061310:CDS 35.0%
!!! GTGTTTTTGGAGGTTTTTAC+GGG - chr7_2:50562004-50562023 Msa1061310:CDS 35.0%
TACGGGATGTTTATTCCATT+CGG - chr7_2:50562021-50562040 Msa1061310:CDS 35.0%
CATTACACATGAAAGGGAAA+AGG + chr7_2:50562113-50562132 None:intergenic 35.0%
TTCATAATGTAAGGAGGGAA+GGG - chr7_2:50562191-50562210 Msa1061310:exon 35.0%
AATGATTGTGTTCAAGGTCA+TGG + chr7_2:50560255-50560274 None:intergenic 35.0%
ATTGGGAATGATTGTGTTCA+AGG + chr7_2:50560261-50560280 None:intergenic 35.0%
TCTTTACGTGAGAAGATGAT+AGG + chr7_2:50560464-50560483 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - chr7_2:50561063-50561082 Msa1061310:intron 35.0%
ACAATGATCGGAGTGATAAT+TGG - chr7_2:50561254-50561273 Msa1061310:intron 35.0%
TAATTGGCAATGATGATTGG+CGG - chr7_2:50561270-50561289 Msa1061310:intron 35.0%
!! GTTTTAAATGGTGATCACAG+TGG - chr7_2:50561371-50561390 Msa1061310:intron 35.0%
TAGAGGTGATCTAAGAAAGT+TGG - chr7_2:50561437-50561456 Msa1061310:intron 35.0%
ATCTAAGAAAGTTGGAGTGA+TGG - chr7_2:50561445-50561464 Msa1061310:intron 35.0%
TTATAGGGTGGGAAAAGTAA+TGG + chr7_2:50561937-50561956 None:intergenic 35.0%
!!! CGTGTTTTTGGAGGTTTTTA+CGG - chr7_2:50562003-50562022 Msa1061310:CDS 35.0%
!!! GTGTTTTTGGAGGTTTTTAC+GGG - chr7_2:50562004-50562023 Msa1061310:CDS 35.0%
TACGGGATGTTTATTCCATT+CGG - chr7_2:50562021-50562040 Msa1061310:CDS 35.0%
CATTACACATGAAAGGGAAA+AGG + chr7_2:50562113-50562132 None:intergenic 35.0%
TTCATAATGTAAGGAGGGAA+GGG - chr7_2:50562191-50562210 Msa1061310:exon 35.0%
!! TCAGTTGTTGTTTCAGCAGT+TGG - chr7_2:50560365-50560384 Msa1061310:three_prime_UTR 40.0%
GTTGGAGATGTATCTTCTGA+TGG - chr7_2:50560383-50560402 Msa1061310:three_prime_UTR 40.0%
GGCACTATTTATCTTGTTGC+TGG - chr7_2:50560404-50560423 Msa1061310:three_prime_UTR 40.0%
!! TATCTTGTTGCTGGTGCTAT+TGG - chr7_2:50560413-50560432 Msa1061310:three_prime_UTR 40.0%
GCTATTGGAATTGCTCTTGT+TGG - chr7_2:50560428-50560447 Msa1061310:three_prime_UTR 40.0%
TTGAACTTTGCTCAGTTGGT+AGG - chr7_2:50561035-50561054 Msa1061310:intron 40.0%
! TGAACTTTGCTCAGTTGGTA+GGG - chr7_2:50561036-50561055 Msa1061310:intron 40.0%
GCATAATATATGCAAGGTCC+GGG - chr7_2:50561064-50561083 Msa1061310:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - chr7_2:50561065-50561084 Msa1061310:intron 40.0%
TGGTTGAAACTGGTTGTTGT+TGG - chr7_2:50561184-50561203 Msa1061310:intron 40.0%
! TTGAAACTGGTTGTTGTTGG+AGG - chr7_2:50561187-50561206 Msa1061310:intron 40.0%
CAAACAGTGGCTACAATGAT+CGG - chr7_2:50561242-50561261 Msa1061310:intron 40.0%
GCAACGATCAGAATGATGAT+TGG - chr7_2:50561303-50561322 Msa1061310:intron 40.0%
ACGATCAGAATGATGATTGG+TGG - chr7_2:50561306-50561325 Msa1061310:intron 40.0%
! AGAATGATGATTGGTGGACA+AGG - chr7_2:50561312-50561331 Msa1061310:intron 40.0%
! GAATGATGATTGGTGGACAA+GGG - chr7_2:50561313-50561332 Msa1061310:intron 40.0%
AGTGGTGATCAGAGTATATG+TGG - chr7_2:50561389-50561408 Msa1061310:intron 40.0%
!! GAGTATATGTGGTGTCATAG+TGG - chr7_2:50561400-50561419 Msa1061310:intron 40.0%
!! TATATGTGGTGTCATAGTGG+TGG - chr7_2:50561403-50561422 Msa1061310:intron 40.0%
! ACGTTTTCATGTTACCACCA+AGG + chr7_2:50561534-50561553 None:intergenic 40.0%
ATTGTTTGTGCTCGTTGTGA+TGG - chr7_2:50561861-50561880 Msa1061310:intron 40.0%
AAGGCGCGTGAGAAATTTAT+AGG - chr7_2:50562065-50562084 Msa1061310:CDS 40.0%
CTTCATAATGTAAGGAGGGA+AGG - chr7_2:50562190-50562209 Msa1061310:exon 40.0%
!! TCAGTTGTTGTTTCAGCAGT+TGG - chr7_2:50560365-50560384 Msa1061310:three_prime_UTR 40.0%
GTTGGAGATGTATCTTCTGA+TGG - chr7_2:50560383-50560402 Msa1061310:three_prime_UTR 40.0%
GGCACTATTTATCTTGTTGC+TGG - chr7_2:50560404-50560423 Msa1061310:three_prime_UTR 40.0%
!! TATCTTGTTGCTGGTGCTAT+TGG - chr7_2:50560413-50560432 Msa1061310:three_prime_UTR 40.0%
GCTATTGGAATTGCTCTTGT+TGG - chr7_2:50560428-50560447 Msa1061310:three_prime_UTR 40.0%
TTGAACTTTGCTCAGTTGGT+AGG - chr7_2:50561035-50561054 Msa1061310:intron 40.0%
! TGAACTTTGCTCAGTTGGTA+GGG - chr7_2:50561036-50561055 Msa1061310:intron 40.0%
GCATAATATATGCAAGGTCC+GGG - chr7_2:50561064-50561083 Msa1061310:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - chr7_2:50561065-50561084 Msa1061310:intron 40.0%
TGGTTGAAACTGGTTGTTGT+TGG - chr7_2:50561184-50561203 Msa1061310:intron 40.0%
! TTGAAACTGGTTGTTGTTGG+AGG - chr7_2:50561187-50561206 Msa1061310:intron 40.0%
CAAACAGTGGCTACAATGAT+CGG - chr7_2:50561242-50561261 Msa1061310:intron 40.0%
GCAACGATCAGAATGATGAT+TGG - chr7_2:50561303-50561322 Msa1061310:intron 40.0%
ACGATCAGAATGATGATTGG+TGG - chr7_2:50561306-50561325 Msa1061310:intron 40.0%
! AGAATGATGATTGGTGGACA+AGG - chr7_2:50561312-50561331 Msa1061310:intron 40.0%
! GAATGATGATTGGTGGACAA+GGG - chr7_2:50561313-50561332 Msa1061310:intron 40.0%
AGTGGTGATCAGAGTATATG+TGG - chr7_2:50561389-50561408 Msa1061310:intron 40.0%
!! GAGTATATGTGGTGTCATAG+TGG - chr7_2:50561400-50561419 Msa1061310:intron 40.0%
!! TATATGTGGTGTCATAGTGG+TGG - chr7_2:50561403-50561422 Msa1061310:intron 40.0%
! ACGTTTTCATGTTACCACCA+AGG + chr7_2:50561534-50561553 None:intergenic 40.0%
ATTGTTTGTGCTCGTTGTGA+TGG - chr7_2:50561861-50561880 Msa1061310:intron 40.0%
AAGGCGCGTGAGAAATTTAT+AGG - chr7_2:50562065-50562084 Msa1061310:CDS 40.0%
CTTCATAATGTAAGGAGGGA+AGG - chr7_2:50562190-50562209 Msa1061310:exon 40.0%
!!! GTTTTTTTTCGTGGTAGCCG+AGG + chr7_2:50561097-50561116 None:intergenic 45.0%
! AAACTGGTTGTTGTTGGAGG+AGG - chr7_2:50561190-50561209 Msa1061310:intron 45.0%
!! AGGAGGTGTTGGACAACTAT+CGG - chr7_2:50561207-50561226 Msa1061310:intron 45.0%
GAGTGGTGAATAGCAAACAG+TGG - chr7_2:50561229-50561248 Msa1061310:intron 45.0%
! CTATGACCACTAATCGACTC+CGG + chr7_2:50561349-50561368 None:intergenic 45.0%
AGTTGGAGTGATGGTTGACT+TGG - chr7_2:50561454-50561473 Msa1061310:intron 45.0%
!! GTCTTAGTGTTGGTCGTTGA+TGG - chr7_2:50561500-50561519 Msa1061310:intron 45.0%
ATCAGATGCCCTGATTGTGA+TGG - chr7_2:50561771-50561790 Msa1061310:intron 45.0%
!! CAGGGTTTGTTAGGAAAGGT+GGG - chr7_2:50561796-50561815 Msa1061310:intron 45.0%
!! AGGGTTTGTTAGGAAAGGTG+GGG - chr7_2:50561797-50561816 Msa1061310:intron 45.0%
GAGAGCAAATGCAGCAAGAA+AGG - chr7_2:50561827-50561846 Msa1061310:intron 45.0%
TTGTGCTCGTTGTGATGGTT+TGG - chr7_2:50561866-50561885 Msa1061310:intron 45.0%
TGTGCTCGTTGTGATGGTTT+GGG - chr7_2:50561867-50561886 Msa1061310:intron 45.0%
ACGCGAGAAACTTATAGGGT+GGG + chr7_2:50561948-50561967 None:intergenic 45.0%
!!! GTTTTTTTTCGTGGTAGCCG+AGG + chr7_2:50561097-50561116 None:intergenic 45.0%
! AAACTGGTTGTTGTTGGAGG+AGG - chr7_2:50561190-50561209 Msa1061310:intron 45.0%
!! AGGAGGTGTTGGACAACTAT+CGG - chr7_2:50561207-50561226 Msa1061310:intron 45.0%
GAGTGGTGAATAGCAAACAG+TGG - chr7_2:50561229-50561248 Msa1061310:intron 45.0%
! CTATGACCACTAATCGACTC+CGG + chr7_2:50561349-50561368 None:intergenic 45.0%
AGTTGGAGTGATGGTTGACT+TGG - chr7_2:50561454-50561473 Msa1061310:intron 45.0%
!! GTCTTAGTGTTGGTCGTTGA+TGG - chr7_2:50561500-50561519 Msa1061310:intron 45.0%
ATCAGATGCCCTGATTGTGA+TGG - chr7_2:50561771-50561790 Msa1061310:intron 45.0%
!! CAGGGTTTGTTAGGAAAGGT+GGG - chr7_2:50561796-50561815 Msa1061310:intron 45.0%
!! AGGGTTTGTTAGGAAAGGTG+GGG - chr7_2:50561797-50561816 Msa1061310:intron 45.0%
GAGAGCAAATGCAGCAAGAA+AGG - chr7_2:50561827-50561846 Msa1061310:intron 45.0%
TTGTGCTCGTTGTGATGGTT+TGG - chr7_2:50561866-50561885 Msa1061310:intron 45.0%
TGTGCTCGTTGTGATGGTTT+GGG - chr7_2:50561867-50561886 Msa1061310:intron 45.0%
ACGCGAGAAACTTATAGGGT+GGG + chr7_2:50561948-50561967 None:intergenic 45.0%
! GTTGTTGTTGGAGGAGGTGT+TGG - chr7_2:50561196-50561215 Msa1061310:intron 50.0%
GTGTTGGACAACTATCGGAG+TGG - chr7_2:50561212-50561231 Msa1061310:intron 50.0%
! AATGATGATTGGCGGACAGG+TGG - chr7_2:50561278-50561297 Msa1061310:intron 50.0%
! TGGTGGACAAGGGATTGCAA+TGG - chr7_2:50561323-50561342 Msa1061310:intron 50.0%
!! TGTGGTGTCATAGTGGTGGT+TGG - chr7_2:50561407-50561426 Msa1061310:intron 50.0%
!! GGAGTGATGGTTGACTTGGT+TGG - chr7_2:50561458-50561477 Msa1061310:intron 50.0%
!! GTGATGGTTGACTTGGTTGG+TGG - chr7_2:50561461-50561480 Msa1061310:intron 50.0%
!! TTGACTTGGTTGGTGGTGAG+TGG - chr7_2:50561468-50561487 Msa1061310:intron 50.0%
!! GTTGGTGGTGGTCTTAGTGT+TGG - chr7_2:50561490-50561509 Msa1061310:intron 50.0%
!! CGTTGATGGTCATCGATCCT+TGG - chr7_2:50561514-50561533 Msa1061310:intron 50.0%
TGATGGTCATCGATCCTTGG+TGG - chr7_2:50561517-50561536 Msa1061310:intron 50.0%
ACCCTGCTCCATCACAATCA+GGG + chr7_2:50561782-50561801 None:intergenic 50.0%
AACCCTGCTCCATCACAATC+AGG + chr7_2:50561783-50561802 None:intergenic 50.0%
! GTGATGGAGCAGGGTTTGTT+AGG - chr7_2:50561787-50561806 Msa1061310:intron 50.0%
!! GGAGCAGGGTTTGTTAGGAA+AGG - chr7_2:50561792-50561811 Msa1061310:intron 50.0%
!! GCAGGGTTTGTTAGGAAAGG+TGG - chr7_2:50561795-50561814 Msa1061310:intron 50.0%
CACGCGAGAAACTTATAGGG+TGG + chr7_2:50561949-50561968 None:intergenic 50.0%
GGGCACGCGAGAAACTTATA+GGG + chr7_2:50561952-50561971 None:intergenic 50.0%
AGGGCACGCGAGAAACTTAT+AGG + chr7_2:50561953-50561972 None:intergenic 50.0%
AGTTTCTCGCGTGCCCTATT+CGG - chr7_2:50561956-50561975 Msa1061310:CDS 50.0%
! GTTGTTGTTGGAGGAGGTGT+TGG - chr7_2:50561196-50561215 Msa1061310:intron 50.0%
GTGTTGGACAACTATCGGAG+TGG - chr7_2:50561212-50561231 Msa1061310:intron 50.0%
! AATGATGATTGGCGGACAGG+TGG - chr7_2:50561278-50561297 Msa1061310:intron 50.0%
! TGGTGGACAAGGGATTGCAA+TGG - chr7_2:50561323-50561342 Msa1061310:intron 50.0%
!! TGTGGTGTCATAGTGGTGGT+TGG - chr7_2:50561407-50561426 Msa1061310:intron 50.0%
!! GGAGTGATGGTTGACTTGGT+TGG - chr7_2:50561458-50561477 Msa1061310:intron 50.0%
!! GTGATGGTTGACTTGGTTGG+TGG - chr7_2:50561461-50561480 Msa1061310:intron 50.0%
!! TTGACTTGGTTGGTGGTGAG+TGG - chr7_2:50561468-50561487 Msa1061310:intron 50.0%
!! GTTGGTGGTGGTCTTAGTGT+TGG - chr7_2:50561490-50561509 Msa1061310:intron 50.0%
!! CGTTGATGGTCATCGATCCT+TGG - chr7_2:50561514-50561533 Msa1061310:intron 50.0%
TGATGGTCATCGATCCTTGG+TGG - chr7_2:50561517-50561536 Msa1061310:intron 50.0%
ACCCTGCTCCATCACAATCA+GGG + chr7_2:50561782-50561801 None:intergenic 50.0%
AACCCTGCTCCATCACAATC+AGG + chr7_2:50561783-50561802 None:intergenic 50.0%
! GTGATGGAGCAGGGTTTGTT+AGG - chr7_2:50561787-50561806 Msa1061310:intron 50.0%
!! GGAGCAGGGTTTGTTAGGAA+AGG - chr7_2:50561792-50561811 Msa1061310:intron 50.0%
!! GCAGGGTTTGTTAGGAAAGG+TGG - chr7_2:50561795-50561814 Msa1061310:intron 50.0%
CACGCGAGAAACTTATAGGG+TGG + chr7_2:50561949-50561968 None:intergenic 50.0%
GGGCACGCGAGAAACTTATA+GGG + chr7_2:50561952-50561971 None:intergenic 50.0%
AGGGCACGCGAGAAACTTAT+AGG + chr7_2:50561953-50561972 None:intergenic 50.0%
AGTTTCTCGCGTGCCCTATT+CGG - chr7_2:50561956-50561975 Msa1061310:CDS 50.0%
AAGGTCCGGGGTTCAAACCT+CGG - chr7_2:50561077-50561096 Msa1061310:intron 55.0%
! GGCAATGATGATTGGCGGAC+AGG - chr7_2:50561275-50561294 Msa1061310:intron 55.0%
GGACAAGGGATTGCAATGGC+CGG - chr7_2:50561327-50561346 Msa1061310:intron 55.0%
CAATGGCCGGAGTCGATTAG+TGG - chr7_2:50561340-50561359 Msa1061310:intron 55.0%
! GGTGTCATAGTGGTGGTTGG+TGG - chr7_2:50561410-50561429 Msa1061310:intron 55.0%
!! GTCATAGTGGTGGTTGGTGG+TGG - chr7_2:50561413-50561432 Msa1061310:intron 55.0%
!! TGGTGGTTGGTGGTGGTTAG+AGG - chr7_2:50561420-50561439 Msa1061310:intron 55.0%
!! CTTGGTTGGTGGTGAGTGGT+TGG - chr7_2:50561472-50561491 Msa1061310:intron 55.0%
! TGCCCTGATTGTGATGGAGC+AGG - chr7_2:50561777-50561796 Msa1061310:intron 55.0%
! GCCCTGATTGTGATGGAGCA+GGG - chr7_2:50561778-50561797 Msa1061310:intron 55.0%
AAGGTCCGGGGTTCAAACCT+CGG - chr7_2:50561077-50561096 Msa1061310:intron 55.0%
! GGCAATGATGATTGGCGGAC+AGG - chr7_2:50561275-50561294 Msa1061310:intron 55.0%
GGACAAGGGATTGCAATGGC+CGG - chr7_2:50561327-50561346 Msa1061310:intron 55.0%
CAATGGCCGGAGTCGATTAG+TGG - chr7_2:50561340-50561359 Msa1061310:intron 55.0%
! GGTGTCATAGTGGTGGTTGG+TGG - chr7_2:50561410-50561429 Msa1061310:intron 55.0%
!! GTCATAGTGGTGGTTGGTGG+TGG - chr7_2:50561413-50561432 Msa1061310:intron 55.0%
!! TGGTGGTTGGTGGTGGTTAG+AGG - chr7_2:50561420-50561439 Msa1061310:intron 55.0%
!! CTTGGTTGGTGGTGAGTGGT+TGG - chr7_2:50561472-50561491 Msa1061310:intron 55.0%
! TGCCCTGATTGTGATGGAGC+AGG - chr7_2:50561777-50561796 Msa1061310:intron 55.0%
! GCCCTGATTGTGATGGAGCA+GGG - chr7_2:50561778-50561797 Msa1061310:intron 55.0%
GGTAGCCGAGGTTTGAACCC+CGG + chr7_2:50561085-50561104 None:intergenic 60.0%
!! GGTTGGTGGTGAGTGGTTGG+TGG - chr7_2:50561475-50561494 Msa1061310:intron 60.0%
!! TGGTGGTGAGTGGTTGGTGG+TGG - chr7_2:50561478-50561497 Msa1061310:intron 60.0%
GGTAGCCGAGGTTTGAACCC+CGG + chr7_2:50561085-50561104 None:intergenic 60.0%
!! GGTTGGTGGTGAGTGGTTGG+TGG - chr7_2:50561475-50561494 Msa1061310:intron 60.0%
!! TGGTGGTGAGTGGTTGGTGG+TGG - chr7_2:50561478-50561497 Msa1061310:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 50560106 50562336 50560106 ID=Msa1061310;Name=Msa1061310
chr7_2 mRNA 50560106 50562336 50560106 ID=Msa1061310-mRNA-1;Parent=Msa1061310;Name=Msa1061310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|0|0|2|422|126
chr7_2 exon 50560106 50560666 50560106 ID=Msa1061310-mRNA-1:exon:9140;Parent=Msa1061310-mRNA-1
chr7_2 exon 50561956 50562336 50561956 ID=Msa1061310-mRNA-1:exon:9139;Parent=Msa1061310-mRNA-1
chr7_2 five_prime_UTR 50562198 50562336 50562198 ID=Msa1061310-mRNA-1:five_prime_utr;Parent=Msa1061310-mRNA-1
chr7_2 CDS 50561956 50562197 50561956 ID=Msa1061310-mRNA-1:cds;Parent=Msa1061310-mRNA-1
chr7_2 CDS 50560528 50560666 50560528 ID=Msa1061310-mRNA-1:cds;Parent=Msa1061310-mRNA-1
chr7_2 three_prime_UTR 50560106 50560527 50560106 ID=Msa1061310-mRNA-1:three_prime_utr;Parent=Msa1061310-mRNA-1
Gene Sequence

>Msa1061310

ATGGCATCCATGACCTTGAACACAATCATTCCCAATGTTACAATTTCCAACAACACTAAACTCTTATTTGGAGGCTCAACAAATGTGTCATGTAACAAGATTCATCAGAAGAGATCTTCATCAGTTGTTGTTTCAGCAGTTGGAGATGTATCTTCTGATGGCACTATTTATCTTGTTGCTGGTGCTATTGGAATTGCTCTTGTTGGAACTGCATTTCCTATCATCTTCTCACGTAAAGACACATGCCCTGATTGTGATGGAGCAGGGTTTGTTAGGAAAGGTGGGGTGACATTGAGAGCAAATGCAGCAAGAAAGGATCAAACTCAAATTGTTTGTGCTCGTTGTGATGGTTTGGGAAAACTTAACCAAGTTGACAAATAG

Protein sequence

>Msa1061310

MASMTLNTIIPNVTISNNTKLLFGGSTNVSCNKIHQKRSSSVVVSAVGDVSSDGTIYLVAGAIGIALVGTAFPIIFSRKDTCPDCDGAGFVRKGGVTLRANAARKDQTQIVCARCDGLGKLNQVDK*