AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0271810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0271810 MtrunA17_Chr2g0279121 91.293 379 10 2 1 372 1 363 0.0 626
Msa0271810 MtrunA17_Chr5g0402141 88.406 207 13 2 1 196 1 207 1.16e-123 355
Msa0271810 MtrunA17_Chr8g0369281 42.466 73 35 1 289 361 590 655 1.11e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0271810 AT5G09390.1 51.554 386 129 14 3 369 2 348 2.84e-99 298
Msa0271810 AT5G09390.2 51.554 386 127 15 3 369 2 346 3.02e-97 293
Msa0271810 AT3G54230.3 52.632 57 27 0 305 361 291 347 1.18e-11 66.6
Msa0271810 AT3G54230.4 52.632 57 27 0 305 361 527 583 1.67e-11 66.2
Msa0271810 AT3G54230.5 52.632 57 27 0 305 361 571 627 1.95e-11 66.2
Msa0271810 AT3G54230.1 52.632 57 27 0 305 361 571 627 1.95e-11 66.2
Msa0271810 AT3G54230.2 52.632 57 27 0 305 361 572 628 1.97e-11 66.2

Find 110 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAAATAAATTTGAAATT+TGG 0.139199 2_3:+3329273 None:intergenic
CATTAGTAACGTCCTAAATT+TGG 0.196527 2_3:+3329219 None:intergenic
ACCCTCTGTAGAAGAATTAA+TGG 0.205062 2_3:+3330888 None:intergenic
TACATATTCAACAAAGTTTC+CGG 0.210557 2_3:+3332757 None:intergenic
GCAAGAGAAGAAGGCATATC+TGG 0.245769 2_3:-3331012 Msa0271810:CDS
GAGCAATAAAGCCCTGTATT+TGG 0.270672 2_3:+3330511 None:intergenic
AATTGGATAGCTGTTTATTT+TGG 0.274140 2_3:-3329244 Msa0271810:three_prime_UTR
GGTTGCTGAAGTTACATATA+AGG 0.281505 2_3:-3333971 Msa0271810:intron
CTTCTTCCCTTTCTTTATCT+AGG 0.286299 2_3:+3332795 None:intergenic
CAAGGCTTGAGAAGGTTAAA+AGG 0.290887 2_3:-3331839 Msa0271810:CDS
TTTATTTCTGCTTGTGCAAT+TGG 0.291774 2_3:-3329261 Msa0271810:three_prime_UTR
CCCACACTTTCTACTTGTTT+AGG 0.315628 2_3:-3329456 Msa0271810:three_prime_UTR
ACATGCCCATCAACTCAAAT+TGG 0.319252 2_3:+3329575 None:intergenic
TGTAAGAGATAATGAGATTA+AGG 0.321918 2_3:-3332738 Msa0271810:intron
CTTTATTGCTCTGCAGCATC+AGG 0.330180 2_3:-3330499 Msa0271810:CDS
TTCTCCACTATTACTTCAAC+TGG 0.331421 2_3:+3334117 None:intergenic
TTCAGATGGATATGAGAAAT+TGG 0.332332 2_3:-3331040 Msa0271810:CDS
TATTATTACAGCAGCAGTTT+GGG 0.342926 2_3:-3330547 Msa0271810:CDS
TGAGGATGCTATGAAGCTTA+TGG 0.343326 2_3:-3331756 Msa0271810:CDS
TATGTGTATGATGAATCTTC+TGG 0.364127 2_3:-3330749 Msa0271810:CDS
TGAGTTGATGGGCATGTCTC+AGG 0.367641 2_3:-3329569 Msa0271810:exon
TTGCATCCAATTTGAGTTGA+TGG 0.369030 2_3:-3329581 Msa0271810:exon
CGAAAGAGTATGTGTTATAA+AGG 0.377599 2_3:+3329407 None:intergenic
AACGCATAGGCATTAGTAAT+TGG 0.382089 2_3:+3331078 None:intergenic
TATTATTATGATCCAAATAC+AGG 0.383294 2_3:-3330523 Msa0271810:CDS
GAGCTTATCAGTGACGAAAA+TGG 0.385754 2_3:-3334006 Msa0271810:CDS
TATACAGAGCAAAGAGGGTT+AGG 0.385882 2_3:-3334164 Msa0271810:intron
GTTGAACCGCTTCTTCTCTC+TGG 0.387519 2_3:-3334383 Msa0271810:five_prime_UTR
TCAACACAGAAACATGCTAT+TGG 0.397359 2_3:+3329373 None:intergenic
GGTTTCCCTTTCTTCCCCTT+CGG 0.405507 2_3:+3334138 None:intergenic
GTATTATTACAGCAGCAGTT+TGG 0.417915 2_3:-3330548 Msa0271810:CDS
CGCTCTTTCGCAGCAACAGC+CGG 0.424765 2_3:+3334057 None:intergenic
TTCATCTGTAGATGGCTTAG+TGG 0.438911 2_3:+3330942 None:intergenic
CATCTTTAGAAGAAAGCTCT+TGG 0.448194 2_3:+3332546 None:intergenic
TCGTGCTGAGCAGGCTGTTA+TGG 0.448836 2_3:-3329329 Msa0271810:three_prime_UTR
GAGCTTAATCCAGCATATCT+AGG 0.449387 2_3:+3332596 None:intergenic
TGTTTATCATGAACATAAAG+AGG 0.460380 2_3:-3331537 Msa0271810:CDS
AACATGCTATTGGAACTTGC+AGG 0.461195 2_3:+3329383 None:intergenic
CTTTCTTTATCTAGGTTGAA+AGG 0.462334 2_3:+3332803 None:intergenic
TGGAAGGAAGCTTCAATGTC+AGG 0.463768 2_3:-3334363 Msa0271810:exon
AACCTCATTAACTTCATCAT+AGG 0.465828 2_3:+3329602 None:intergenic
AACTTGTGATCGTGCTGAGC+AGG 0.468831 2_3:-3329338 Msa0271810:three_prime_UTR
GCTCTGCAGCATCAGGGAAA+TGG 0.470280 2_3:-3330492 Msa0271810:intron
TGTCAATAATTTGTCGAATC+CGG 0.470790 2_3:-3334076 Msa0271810:CDS
CTTTCAACCTAGATAAAGAA+AGG 0.472858 2_3:-3332802 Msa0271810:CDS
GAAACCAGTTGAAGTAATAG+TGG 0.478435 2_3:-3334121 Msa0271810:CDS
TACAATCTCTCTCTTTCAGA+TGG 0.489410 2_3:-3331054 Msa0271810:CDS
TGCATCCAATTTGAGTTGAT+GGG 0.491551 2_3:-3329580 Msa0271810:exon
AGGTTTCCGAAGGGGAAGAA+AGG 0.492649 2_3:-3334144 Msa0271810:CDS
ATGGATATGAGAAATTGGTC+AGG 0.501327 2_3:-3331035 Msa0271810:CDS
GGAGAAAGTAATTGCTGAGG+AGG 0.501353 2_3:-3334100 Msa0271810:CDS
ATATGTAACTTCAGCAACCT+TGG 0.504625 2_3:+3333975 None:intergenic
CTGCGAAAGAGCGGGTGAAA+CGG 0.509628 2_3:-3334047 Msa0271810:CDS
GGCTGTTGCTGCGAAAGAGC+GGG 0.519946 2_3:-3334055 Msa0271810:CDS
GAGGTTGATCCTAGATATGC+TGG 0.521594 2_3:-3332605 Msa0271810:CDS
CTAGATAAAGAAAGGGAAGA+AGG 0.521955 2_3:-3332794 Msa0271810:CDS
TCATAGCATCCTCAGTTAGC+TGG 0.523032 2_3:+3331765 None:intergenic
TTGGTCAGGGCAAGAGAAGA+AGG 0.529893 2_3:-3331021 Msa0271810:CDS
GAGTTGATGGGCATGTCTCA+GGG 0.531488 2_3:-3329568 Msa0271810:exon
GCCATTAATTCTTCTACAGA+GGG 0.535218 2_3:-3330889 Msa0271810:intron
AAGGATTCTTGCAGGATGCA+TGG 0.536010 2_3:-3332640 Msa0271810:intron
ATGTGTATGATGAATCTTCT+GGG 0.537005 2_3:-3330748 Msa0271810:intron
TTCCTTCCAGAGAGAAGAAG+CGG 0.538758 2_3:+3334377 None:intergenic
CACCTATGATGAAGTTAATG+AGG 0.540470 2_3:-3329604 Msa0271810:CDS
TTTATTATACAGAGCAAAGA+GGG 0.541213 2_3:-3334169 Msa0271810:intron
TCGTCATCGTCTAAAGGAAG+AGG 0.544997 2_3:+3334309 None:intergenic
GTGGAATCGTCATCGTCTAA+AGG 0.547325 2_3:+3334303 None:intergenic
TGCCATTAATTCTTCTACAG+AGG 0.548389 2_3:-3330890 Msa0271810:CDS
CAAGAGAAGAAGGCATATCT+GGG 0.549609 2_3:-3331011 Msa0271810:CDS
GGCAGCTTGTCCGTCATCAT+CGG 0.552049 2_3:+3330963 None:intergenic
TTTCAACCTAGATAAAGAAA+GGG 0.555045 2_3:-3332801 Msa0271810:CDS
GAATTAATGGCATCTGATGA+TGG 0.555391 2_3:+3330901 None:intergenic
CGGCTGTTGCTGCGAAAGAG+CGG 0.557075 2_3:-3334056 Msa0271810:CDS
AACCGCTTCTTCTCTCTGGA+AGG 0.559795 2_3:-3334379 Msa0271810:five_prime_UTR
GCTATGAAGCTTATGGAGAA+TGG 0.574184 2_3:-3331749 Msa0271810:CDS
GGTTTCCGAAGGGGAAGAAA+GGG 0.574562 2_3:-3334143 Msa0271810:CDS
AGGTCTTACAAGGCTTGAGA+AGG 0.577124 2_3:-3331847 Msa0271810:CDS
TGTTTCTGTACATATGCCAC+TGG 0.579615 2_3:+3329504 None:intergenic
AGAGAGATTGTAAAACGCAT+AGG 0.580839 2_3:+3331065 None:intergenic
AAAGAGGGTTAGGTTTCCGA+AGG 0.583233 2_3:-3334154 Msa0271810:CDS
ACCTAAACAAGTAGAAAGTG+TGG 0.583357 2_3:+3329455 None:intergenic
AAGGAAGAGGGCGTTTGCCG+CGG 0.585989 2_3:+3334322 None:intergenic
ACTTGTTTAGGTGCTAATGC+CGG 0.590314 2_3:-3329444 Msa0271810:three_prime_UTR
TGTGGCAACAAATGATGAAG+AGG 0.599994 2_3:-3332573 Msa0271810:CDS
TTGAGAAGGTTAAAAGGCAG+CGG 0.601512 2_3:-3331833 Msa0271810:CDS
AGAGCTTTCTTCTAAAGATG+TGG 0.604642 2_3:-3332543 Msa0271810:CDS
TCACAATCATTGTCTTCCAG+TGG 0.607276 2_3:-3329520 Msa0271810:three_prime_UTR
GAAGGTTCATCTCGCAGCCG+CGG 0.611291 2_3:-3334339 Msa0271810:CDS
GAAGCTTCAATGTCAGGTGA+AGG 0.616621 2_3:-3334357 Msa0271810:exon
ATTTATTATACAGAGCAAAG+AGG 0.622204 2_3:-3334170 Msa0271810:intron
GATATGTTTGCCGATGATGA+CGG 0.625638 2_3:-3330973 Msa0271810:CDS
AGTTGATGGGCATGTCTCAG+GGG 0.627121 2_3:-3329567 Msa0271810:exon
TTTATTGCTCTGCAGCATCA+GGG 0.627159 2_3:-3330498 Msa0271810:CDS
AGTGGAGAAAGTAATTGCTG+AGG 0.631361 2_3:-3334103 Msa0271810:CDS
GGCAACAAATGATGAAGAGG+AGG 0.636640 2_3:-3332570 Msa0271810:CDS
AAGAGGGTTAGGTTTCCGAA+GGG 0.638652 2_3:-3334153 Msa0271810:CDS
CGTCATCGTCTAAAGGAAGA+GGG 0.640801 2_3:+3334310 None:intergenic
TGGATATGAGAAATTGGTCA+GGG 0.642321 2_3:-3331034 Msa0271810:CDS
AAGATGTGGCAATCATGAAG+AGG 0.647170 2_3:-3332529 Msa0271810:CDS
CGAAAATGGAGGTATCTCCA+AGG 0.648366 2_3:-3333992 Msa0271810:CDS
CGAAAGAGCGGGTGAAACGG+AGG 0.652391 2_3:-3334044 Msa0271810:CDS
TGTATTTGACCAGCTAACTG+AGG 0.659418 2_3:-3331774 Msa0271810:CDS
TGCATGGCTTGATAATGTTG+AGG 0.660639 2_3:-3332624 Msa0271810:CDS
CTTATCAGTGACGAAAATGG+AGG 0.666680 2_3:-3334003 Msa0271810:CDS
AGAAGGCATATCTGGGAACA+CGG 0.667646 2_3:-3331004 Msa0271810:CDS
ATTATTATGATCCAAATACA+GGG 0.667789 2_3:-3330522 Msa0271810:CDS
AGAGGGTTAGGTTTCCGAAG+GGG 0.676923 2_3:-3334152 Msa0271810:CDS
CCTAAACAAGTAGAAAGTGT+GGG 0.677781 2_3:+3329456 None:intergenic
TTTCAGCTTCTACACAGACG+AGG 0.692973 2_3:+3334408 None:intergenic
ATATGCTGGATTAAGCTCTG+TGG 0.715071 2_3:-3332591 Msa0271810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAATTCATAATAATAA+TGG + chr2_3:3329321-3329340 None:intergenic 10.0%
!!! CTTTTATTTTTAAGAAAATT+TGG + chr2_3:3331468-3331487 None:intergenic 10.0%
!!! TTATTTTCAAAAAAAGTATA+CGG + chr2_3:3332827-3332846 None:intergenic 10.0%
!! TTCTTTATATTATATAGATT+AGG - chr2_3:3333632-3333651 Msa0271810:intron 10.0%
!!! ATAATAATGGAATCAAATTA+GGG + chr2_3:3329308-3329327 None:intergenic 15.0%
!!! AATAATAATGGAATCAAATT+AGG + chr2_3:3329309-3329328 None:intergenic 15.0%
!!! TTCTCTTATATAGTAATTTT+AGG + chr2_3:3330119-3330138 None:intergenic 15.0%
!!! CTGGAATATATATTTTTTTT+TGG + chr2_3:3330386-3330405 None:intergenic 15.0%
!!! AATAATTTGTATTTGTTGTA+TGG - chr2_3:3330471-3330490 Msa0271810:intron 15.0%
!!! AAACCTTTAAATTATTCTTT+TGG - chr2_3:3331188-3331207 Msa0271810:intron 15.0%
!! TTACCAAAAGAATAATTTAA+AGG + chr2_3:3331194-3331213 None:intergenic 15.0%
!! ACATAATAAAAATAAAGCAA+AGG + chr2_3:3332062-3332081 None:intergenic 15.0%
!! AATTATGTCATTAAAATACA+TGG + chr2_3:3332194-3332213 None:intergenic 15.0%
!!! TCATCTTTAATGTTTTTAAT+CGG - chr2_3:3332726-3332745 Msa0271810:intron 15.0%
!! AAAGAAAAACCTAAAAAACA+AGG + chr2_3:3329597-3329616 None:intergenic 20.0%
!! AATAAACCAATTCATCAAAT+AGG - chr2_3:3329872-3329891 Msa0271810:intron 20.0%
!! GAATACATTATTTGAACAAA+TGG - chr2_3:3329935-3329954 Msa0271810:intron 20.0%
!! TTGAACAAATGGATAAAAAA+AGG - chr2_3:3329946-3329965 Msa0271810:intron 20.0%
!!! TTGTAACATTTTTCTGTTAA+TGG - chr2_3:3329993-3330012 Msa0271810:intron 20.0%
!! GTTATAAGAATATGCTTATA+TGG - chr2_3:3330044-3330063 Msa0271810:intron 20.0%
!! ACTTAGAACATTTCATTAAT+TGG - chr2_3:3330414-3330433 Msa0271810:intron 20.0%
!! ATTCAATTAATAAGTTGTCA+AGG - chr2_3:3330877-3330896 Msa0271810:intron 20.0%
!! TGAATCAAATGATAAAACAT+AGG + chr2_3:3331072-3331091 None:intergenic 20.0%
!! TTATCATTTGATTCATTCTT+AGG - chr2_3:3331077-3331096 Msa0271810:CDS 20.0%
!! AATTTGTAATTAGTGACAAT+AGG - chr2_3:3331131-3331150 Msa0271810:intron 20.0%
!!! AAATTTCCCTTTTTGATTTT+CGG + chr2_3:3331316-3331335 None:intergenic 20.0%
!!! GTACATACTTATTTTGTTAA+GGG - chr2_3:3331618-3331637 Msa0271810:intron 20.0%
!!! TAATTGATATCTTTTCCAAT+AGG - chr2_3:3331669-3331688 Msa0271810:intron 20.0%
!!! TTTTCTTATTATAACACTGA+TGG + chr2_3:3332273-3332292 None:intergenic 20.0%
!!! CTTTTACATCATTAAATCAT+AGG + chr2_3:3332873-3332892 None:intergenic 20.0%
!! TATTATTATGATCCAAATAC+AGG - chr2_3:3333013-3333032 Msa0271810:intron 20.0%
!! ATTATTATGATCCAAATACA+GGG - chr2_3:3333014-3333033 Msa0271810:intron 20.0%
!!! GTTTATTTTTGTTTAAACAC+AGG - chr2_3:3333886-3333905 Msa0271810:intron 20.0%
!!! GCAGAAATAAATTTGAAATT+TGG + chr2_3:3334266-3334285 None:intergenic 20.0%
! AAGAAGAAGAAGAAGAATTA+CGG + chr2_3:3329269-3329288 None:intergenic 25.0%
! ATTTATTATACAGAGCAAAG+AGG - chr2_3:3329366-3329385 Msa0271810:three_prime_UTR 25.0%
! TTTATTATACAGAGCAAAGA+GGG - chr2_3:3329367-3329386 Msa0271810:three_prime_UTR 25.0%
!!! GTTTTTGTGTTGATAGATAA+TGG - chr2_3:3329619-3329638 Msa0271810:CDS 25.0%
! TAAGTTTCGTAAGACTATTT+GGG + chr2_3:3329833-3329852 None:intergenic 25.0%
! ATAAGTTTCGTAAGACTATT+TGG + chr2_3:3329834-3329853 None:intergenic 25.0%
! GTCAAATTACAAAACAATCA+TGG + chr2_3:3330582-3330601 None:intergenic 25.0%
! TTTCAACCTAGATAAAGAAA+GGG - chr2_3:3330735-3330754 Msa0271810:intron 25.0%
! TACATATTCAACAAAGTTTC+CGG + chr2_3:3330782-3330801 None:intergenic 25.0%
! TGTAAGAGATAATGAGATTA+AGG - chr2_3:3330798-3330817 Msa0271810:intron 25.0%
!! GAATAATTTAAAGGTTTGCT+TGG + chr2_3:3331185-3331204 None:intergenic 25.0%
! GATACCCTTTAAACATTTAT+TGG - chr2_3:3331231-3331250 Msa0271810:intron 25.0%
! CTAGCCAATAAATGTTTAAA+GGG + chr2_3:3331238-3331257 None:intergenic 25.0%
! TGTAAGAAGTTATATTAGCT+TGG - chr2_3:3331502-3331521 Msa0271810:intron 25.0%
! TCAATTAAAGTGATTTCCAA+TGG + chr2_3:3331585-3331604 None:intergenic 25.0%
! TTGGAAATCACTTTAATTGA+CGG - chr2_3:3331585-3331604 Msa0271810:intron 25.0%
!!! CGTACATACTTATTTTGTTA+AGG - chr2_3:3331617-3331636 Msa0271810:intron 25.0%
! TGTTTATCATGAACATAAAG+AGG - chr2_3:3331999-3332018 Msa0271810:intron 25.0%
! GTCACAAAACATAAAAGTAA+AGG + chr2_3:3332103-3332122 None:intergenic 25.0%
! TTATTATAACACTGATGGTA+CGG + chr2_3:3332268-3332287 None:intergenic 25.0%
!! AAGTTTAAAGCTTAATGTGA+TGG + chr2_3:3332308-3332327 None:intergenic 25.0%
!!! TCACATTAAGCTTTAAACTT+AGG - chr2_3:3332308-3332327 Msa0271810:intron 25.0%
!!! CACATTAAGCTTTAAACTTA+GGG - chr2_3:3332309-3332328 Msa0271810:intron 25.0%
!!! ACATTAAGCTTTAAACTTAG+GGG - chr2_3:3332310-3332329 Msa0271810:intron 25.0%
! TACGTTGATATCATTATTCA+TGG + chr2_3:3332386-3332405 None:intergenic 25.0%
! TATCAACGTATAGATTTACA+AGG - chr2_3:3332396-3332415 Msa0271810:intron 25.0%
! AAACATTGTCTCTATAACTT+TGG - chr2_3:3332673-3332692 Msa0271810:intron 25.0%
! TTTAAATCCTAATCCTATTC+TGG - chr2_3:3333181-3333200 Msa0271810:intron 25.0%
! AATATCTATCTAACCAGAAT+AGG + chr2_3:3333197-3333216 None:intergenic 25.0%
! TACAAATAATGCATGTTTCT+AGG + chr2_3:3333238-3333257 None:intergenic 25.0%
!! TTGTACTTTAAGTTTGATCT+TGG - chr2_3:3333253-3333272 Msa0271810:intron 25.0%
!! TGTACTTTAAGTTTGATCTT+GGG - chr2_3:3333254-3333273 Msa0271810:intron 25.0%
! ATAGACAATGCTATTGTTAT+AGG - chr2_3:3333485-3333504 Msa0271810:intron 25.0%
!! CTCTTGTTTATCTATAACTT+AGG - chr2_3:3333551-3333570 Msa0271810:intron 25.0%
! TACAACATTAAAACTCTAGA+GGG + chr2_3:3333706-3333725 None:intergenic 25.0%
! ATACAACATTAAAACTCTAG+AGG + chr2_3:3333707-3333726 None:intergenic 25.0%
!!! AGTTTTAATGTTGTATTTCC+TGG - chr2_3:3333711-3333730 Msa0271810:intron 25.0%
!!! GTTTTAATGTTGTATTTCCT+GGG - chr2_3:3333712-3333731 Msa0271810:intron 25.0%
!! TATTTTCTGCATTTAGTGAT+CGG - chr2_3:3333816-3333835 Msa0271810:intron 25.0%
!! AATTGGATAGCTGTTTATTT+TGG - chr2_3:3334292-3334311 Msa0271810:CDS 25.0%
! TGTCAATAATTTGTCGAATC+CGG - chr2_3:3329460-3329479 Msa0271810:three_prime_UTR 30.0%
!!! AGGTTTGTTCCTTGTTTTTT+AGG - chr2_3:3329585-3329604 Msa0271810:CDS 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr2_3:3329755-3329774 Msa0271810:intron 30.0%
!! AAGATGTTTTCAGCTGATTT+TGG + chr2_3:3329789-3329808 None:intergenic 30.0%
! AATCTCATGTTCTGAACATT+GGG + chr2_3:3329898-3329917 None:intergenic 30.0%
! AAATCTCATGTTCTGAACAT+TGG + chr2_3:3329899-3329918 None:intergenic 30.0%
!! ATAAAAAAAGGTACTGTGAG+TGG - chr2_3:3329958-3329977 Msa0271810:intron 30.0%
!! GAATTAAGAATGTTCTAGAG+TGG - chr2_3:3330015-3330034 Msa0271810:intron 30.0%
TAGTCAAATTACTACACTAG+AGG - chr2_3:3330083-3330102 Msa0271810:intron 30.0%
CTGGAATATATCAACAAGAT+CGG + chr2_3:3330227-3330246 None:intergenic 30.0%
GTAAAAATGCCGAAATTGTT+AGG - chr2_3:3330275-3330294 Msa0271810:intron 30.0%
TTTCATTAATTGGCAATGCT+TGG - chr2_3:3330424-3330443 Msa0271810:intron 30.0%
TGTTCAAATGAACATGTCAT+TGG - chr2_3:3330621-3330640 Msa0271810:intron 30.0%
GTTCAAATGAACATGTCATT+GGG - chr2_3:3330622-3330641 Msa0271810:intron 30.0%
ATGTCATTGGGTTCATATTA+AGG - chr2_3:3330634-3330653 Msa0271810:intron 30.0%
ATTGGGTTCATATTAAGGAT+AGG - chr2_3:3330639-3330658 Msa0271810:intron 30.0%
TGCAGATTAATAATGTGTGT+TGG - chr2_3:3330668-3330687 Msa0271810:intron 30.0%
! GGAAAATGAGAATTTTGTTG+AGG - chr2_3:3330693-3330712 Msa0271810:intron 30.0%
! AATGAGAATTTTGTTGAGGA+CGG - chr2_3:3330697-3330716 Msa0271810:intron 30.0%
! CTTTCTTTATCTAGGTTGAA+AGG + chr2_3:3330736-3330755 None:intergenic 30.0%
CTTTCAACCTAGATAAAGAA+AGG - chr2_3:3330734-3330753 Msa0271810:intron 30.0%
! TCTTTTGGTAAACATTGTTG+AGG - chr2_3:3331203-3331222 Msa0271810:intron 30.0%
! CTTTTGGTAAACATTGTTGA+GGG - chr2_3:3331204-3331223 Msa0271810:intron 30.0%
GCTAGCCAATAAATGTTTAA+AGG + chr2_3:3331239-3331258 None:intergenic 30.0%
TCCTCTTAATGTGTAAAGAA+TGG - chr2_3:3331262-3331281 Msa0271810:intron 30.0%
CCTCTTAATGTGTAAAGAAT+GGG - chr2_3:3331263-3331282 Msa0271810:intron 30.0%
AGAATGGGTAATATTGAAGT+TGG - chr2_3:3331278-3331297 Msa0271810:intron 30.0%
GTAATATTGAAGTTGGAACT+AGG - chr2_3:3331285-3331304 Msa0271810:intron 30.0%
!! TTTGCTGTTAATTCCATAGT+AGG - chr2_3:3331333-3331352 Msa0271810:intron 30.0%
GAGAAAAACAGTTATATGTC+AGG + chr2_3:3331379-3331398 None:intergenic 30.0%
! ATTTTGTTAAGGGATGTTGA+AGG - chr2_3:3331628-3331647 Msa0271810:intron 30.0%
GATAGAAAGACAAAAATGTC+TGG - chr2_3:3331727-3331746 Msa0271810:intron 30.0%
TTCAGTTAAGTCATTCTCAT+TGG - chr2_3:3331814-3331833 Msa0271810:CDS 30.0%
TCAGTTAAGTCATTCTCATT+GGG - chr2_3:3331815-3331834 Msa0271810:CDS 30.0%
ATAAATACATGTCTTAGCCA+TGG + chr2_3:3331856-3331875 None:intergenic 30.0%
TATTTATTATGACAGCCTGA+TGG - chr2_3:3331869-3331888 Msa0271810:intron 30.0%
TACCACATGATGCTTAATAT+TGG - chr2_3:3331941-3331960 Msa0271810:intron 30.0%
! GAGTTACTTTATTAACACGA+TGG - chr2_3:3332142-3332161 Msa0271810:intron 30.0%
TAATTCTATTCCACTTGTGT+TGG - chr2_3:3332209-3332228 Msa0271810:intron 30.0%
TTCAGATGGATATGAGAAAT+TGG - chr2_3:3332496-3332515 Msa0271810:intron 30.0%
! GCATTATTTTCATCTGTAGA+TGG + chr2_3:3332605-3332624 None:intergenic 30.0%
TATAACTTTGGCATCTGAAA+TGG - chr2_3:3332685-3332704 Msa0271810:intron 30.0%
TATGTGTATGATGAATCTTC+TGG - chr2_3:3332787-3332806 Msa0271810:CDS 30.0%
ATGTGTATGATGAATCTTCT+GGG - chr2_3:3332788-3332807 Msa0271810:CDS 30.0%
ATCTGACATCAGTTGTTTAT+TGG - chr2_3:3332960-3332979 Msa0271810:intron 30.0%
TATTATTACAGCAGCAGTTT+GGG - chr2_3:3332989-3333008 Msa0271810:intron 30.0%
TATCTAACCAGAATAGGATT+AGG + chr2_3:3333191-3333210 None:intergenic 30.0%
AAGAATATGCCAATAGTTAG+AGG - chr2_3:3333325-3333344 Msa0271810:intron 30.0%
AGAATATGCCAATAGTTAGA+GGG - chr2_3:3333326-3333345 Msa0271810:intron 30.0%
! AACTTAGGCTCTTGAATTTT+TGG - chr2_3:3333566-3333585 Msa0271810:intron 30.0%
! ACTTAGGCTCTTGAATTTTT+GGG - chr2_3:3333567-3333586 Msa0271810:intron 30.0%
TTAACAAGATCTATCCAACA+TGG + chr2_3:3333596-3333615 None:intergenic 30.0%
ATAGATCTTGTTAAAGTAGC+TGG - chr2_3:3333602-3333621 Msa0271810:intron 30.0%
AAACTATACAGATACTACTC+AGG + chr2_3:3333797-3333816 None:intergenic 30.0%
AACCTCATTAACTTCATCAT+AGG + chr2_3:3333937-3333956 None:intergenic 30.0%
! CGAAAGAGTATGTGTTATAA+AGG + chr2_3:3334132-3334151 None:intergenic 30.0%
!! TTTATTTCTGCTTGTGCAAT+TGG - chr2_3:3334275-3334294 Msa0271810:intron 30.0%
!!! TTTATTTTGGCGCCAAATTT+AGG - chr2_3:3334305-3334324 Msa0271810:CDS 30.0%
CATTAGTAACGTCCTAAATT+TGG + chr2_3:3334320-3334339 None:intergenic 30.0%
!! GAAGAATTACGGTGGATTTT+TGG + chr2_3:3329258-3329277 None:intergenic 35.0%
AAGAAGAAGAAGAATTACGG+TGG + chr2_3:3329266-3329285 None:intergenic 35.0%
GAAACCAGTTGAAGTAATAG+TGG - chr2_3:3329415-3329434 Msa0271810:three_prime_UTR 35.0%
TTCTCCACTATTACTTCAAC+TGG + chr2_3:3329422-3329441 None:intergenic 35.0%
ATATGTAACTTCAGCAACCT+TGG + chr2_3:3329564-3329583 None:intergenic 35.0%
GGTTGCTGAAGTTACATATA+AGG - chr2_3:3329565-3329584 Msa0271810:exon 35.0%
TCTTACGAAACTTATGCCTT+GGG - chr2_3:3329839-3329858 Msa0271810:intron 35.0%
TTTATTTGAGCTTATCCCCA+AGG + chr2_3:3329858-3329877 None:intergenic 35.0%
ATTGGGCCTATTTGATGAAT+TGG + chr2_3:3329881-3329900 None:intergenic 35.0%
TAGGACTTATGAGACAAAAC+TGG + chr2_3:3330246-3330265 None:intergenic 35.0%
ATAAACTCACACACACAAAG+TGG + chr2_3:3330337-3330356 None:intergenic 35.0%
TTGTGTGTGTGAGTTTATGA+TGG - chr2_3:3330339-3330358 Msa0271810:intron 35.0%
!! ATGTTCTAAGTGCTGAAAAC+TGG + chr2_3:3330405-3330424 None:intergenic 35.0%
! GATTAATAATGTGTGTTGGC+AGG - chr2_3:3330672-3330691 Msa0271810:intron 35.0%
CTTCTTCCCTTTCTTTATCT+AGG + chr2_3:3330744-3330763 None:intergenic 35.0%
CTAGATAAAGAAAGGGAAGA+AGG - chr2_3:3330742-3330761 Msa0271810:intron 35.0%
!!! GAAGGTTATTTTGATGCATC+CGG - chr2_3:3330760-3330779 Msa0271810:CDS 35.0%
GAGATAATGAGATTAAGGTG+AGG - chr2_3:3330803-3330822 Msa0271810:intron 35.0%
! CATCTTTAGAAGAAAGCTCT+TGG + chr2_3:3330993-3331012 None:intergenic 35.0%
! AGAGCTTTCTTCTAAAGATG+TGG - chr2_3:3330993-3331012 Msa0271810:CDS 35.0%
CCCATTCTTTACACATTAAG+AGG + chr2_3:3331266-3331285 None:intergenic 35.0%
GAACTGCCGAAAATCAAAAA+GGG - chr2_3:3331307-3331326 Msa0271810:intron 35.0%
TAACAGAGAATAGCCTACTA+TGG + chr2_3:3331349-3331368 None:intergenic 35.0%
! ATCCCCAATTTGGCTTAAAA+AGG - chr2_3:3331437-3331456 Msa0271810:intron 35.0%
! TCCCCAATTTGGCTTAAAAA+GGG - chr2_3:3331438-3331457 Msa0271810:intron 35.0%
TTCTCTTAAAGTCTTGCCAT+TGG - chr2_3:3331566-3331585 Msa0271810:intron 35.0%
! CTTTTCCAATAGGTCTTACA+AGG - chr2_3:3331679-3331698 Msa0271810:intron 35.0%
AGCCAATATTAAGCATCATG+TGG + chr2_3:3331946-3331965 None:intergenic 35.0%
ATTAACACGATGGAATATGC+TGG - chr2_3:3332152-3332171 Msa0271810:intron 35.0%
! TTCCACTTGTGTTGGTATTA+TGG - chr2_3:3332217-3332236 Msa0271810:intron 35.0%
! ACTTGTGTTGGTATTATGGT+CGG - chr2_3:3332221-3332240 Msa0271810:intron 35.0%
ATTGAGATTAACTAATGCCC+AGG + chr2_3:3332344-3332363 None:intergenic 35.0%
TTTACAAGGACTGAAAAGCA+AGG - chr2_3:3332410-3332429 Msa0271810:intron 35.0%
!! GGAATGCTACATGTTTTTGT+AGG - chr2_3:3332431-3332450 Msa0271810:intron 35.0%
AACGCATAGGCATTAGTAAT+TGG + chr2_3:3332461-3332480 None:intergenic 35.0%
AGAGAGATTGTAAAACGCAT+AGG + chr2_3:3332474-3332493 None:intergenic 35.0%
TACAATCTCTCTCTTTCAGA+TGG - chr2_3:3332482-3332501 Msa0271810:intron 35.0%
ATGGATATGAGAAATTGGTC+AGG - chr2_3:3332501-3332520 Msa0271810:intron 35.0%
TGGATATGAGAAATTGGTCA+GGG - chr2_3:3332502-3332521 Msa0271810:intron 35.0%
GAATTAATGGCATCTGATGA+TGG + chr2_3:3332638-3332657 None:intergenic 35.0%
TGCCATTAATTCTTCTACAG+AGG - chr2_3:3332646-3332665 Msa0271810:intron 35.0%
GCCATTAATTCTTCTACAGA+GGG - chr2_3:3332647-3332666 Msa0271810:intron 35.0%
ACCCTCTGTAGAAGAATTAA+TGG + chr2_3:3332651-3332670 None:intergenic 35.0%
GTATTATTACAGCAGCAGTT+TGG - chr2_3:3332988-3333007 Msa0271810:intron 35.0%
!! AGGCAAGTTGATGTTTAAGA+AGG + chr2_3:3333140-3333159 None:intergenic 35.0%
AGCAAAGAACTCACATCTAA+AGG + chr2_3:3333160-3333179 None:intergenic 35.0%
! ATTTTTCCATTAGGTAGGGT+TGG + chr2_3:3333434-3333453 None:intergenic 35.0%
! GGACATTTTTCCATTAGGTA+GGG + chr2_3:3333438-3333457 None:intergenic 35.0%
! TAGTGGGACATTTTTCCATT+AGG + chr2_3:3333443-3333462 None:intergenic 35.0%
!!! GAATTTTTGGGATTCCATGT+TGG - chr2_3:3333579-3333598 Msa0271810:intron 35.0%
TTTAGTGATCGGATCATTCT+TGG - chr2_3:3333827-3333846 Msa0271810:intron 35.0%
TAATTGTCTTTGTAGCTCAC+TGG - chr2_3:3333859-3333878 Msa0271810:intron 35.0%
AATTGTCTTTGTAGCTCACT+GGG - chr2_3:3333860-3333879 Msa0271810:intron 35.0%
CACCTATGATGAAGTTAATG+AGG - chr2_3:3333932-3333951 Msa0271810:intron 35.0%
!! TTGCATCCAATTTGAGTTGA+TGG - chr2_3:3333955-3333974 Msa0271810:intron 35.0%
!! TGCATCCAATTTGAGTTGAT+GGG - chr2_3:3333956-3333975 Msa0271810:intron 35.0%
! CCTAAACAAGTAGAAAGTGT+GGG + chr2_3:3334083-3334102 None:intergenic 35.0%
ACCTAAACAAGTAGAAAGTG+TGG + chr2_3:3334084-3334103 None:intergenic 35.0%
TCAACACAGAAACATGCTAT+TGG + chr2_3:3334166-3334185 None:intergenic 35.0%
!! GAATTACGGTGGATTTTTGG+TGG + chr2_3:3329255-3329274 None:intergenic 40.0%
TATACAGAGCAAAGAGGGTT+AGG - chr2_3:3329372-3329391 Msa0271810:three_prime_UTR 40.0%
AGTGGAGAAAGTAATTGCTG+AGG - chr2_3:3329433-3329452 Msa0271810:three_prime_UTR 40.0%
GAGCTTATCAGTGACGAAAA+TGG - chr2_3:3329530-3329549 Msa0271810:three_prime_UTR 40.0%
CTTATCAGTGACGAAAATGG+AGG - chr2_3:3329533-3329552 Msa0271810:three_prime_UTR 40.0%
GTCTTACGAAACTTATGCCT+TGG - chr2_3:3329838-3329857 Msa0271810:intron 40.0%
CTTACGAAACTTATGCCTTG+GGG - chr2_3:3329840-3329859 Msa0271810:intron 40.0%
TGCTTATATGGTGTACGAGA+TGG - chr2_3:3330056-3330075 Msa0271810:intron 40.0%
TTATATGGTGTACGAGATGG+AGG - chr2_3:3330059-3330078 Msa0271810:intron 40.0%
TATATGGTGTACGAGATGGA+GGG - chr2_3:3330060-3330079 Msa0271810:intron 40.0%
ACTACACTAGAGGTAGAGTA+AGG - chr2_3:3330093-3330112 Msa0271810:intron 40.0%
ACAACGTTGTTTGATCCATG+TGG - chr2_3:3330201-3330220 Msa0271810:intron 40.0%
! GCATTTTTACCAGTTGAGCT+AGG + chr2_3:3330265-3330284 None:intergenic 40.0%
AAATGCCGAAATTGTTAGGC+CGG - chr2_3:3330279-3330298 Msa0271810:intron 40.0%
! TTGTGAAGTTTAGAGCCAGT+TGG - chr2_3:3330532-3330551 Msa0271810:CDS 40.0%
! TGTGAAGTTTAGAGCCAGTT+GGG - chr2_3:3330533-3330552 Msa0271810:CDS 40.0%
GCATTTGAACTAAACCCAAC+TGG + chr2_3:3330550-3330569 None:intergenic 40.0%
GGTTCATATTAAGGATAGGC+AGG - chr2_3:3330643-3330662 Msa0271810:intron 40.0%
AAGTTGTCAAGGATTCTTGC+AGG - chr2_3:3330888-3330907 Msa0271810:intron 40.0%
!! TGCATGGCTTGATAATGTTG+AGG - chr2_3:3330912-3330931 Msa0271810:CDS 40.0%
GAGCTTAATCCAGCATATCT+AGG + chr2_3:3330943-3330962 None:intergenic 40.0%
ATATGCTGGATTAAGCTCTG+TGG - chr2_3:3330945-3330964 Msa0271810:CDS 40.0%
TGTGGCAACAAATGATGAAG+AGG - chr2_3:3330963-3330982 Msa0271810:CDS 40.0%
AAGATGTGGCAATCATGAAG+AGG - chr2_3:3331007-3331026 Msa0271810:CDS 40.0%
TGCAAATGTTCTTGAACCAG+AGG - chr2_3:3331035-3331054 Msa0271810:CDS 40.0%
ATAGGACTTACTGTTTCCTC+TGG + chr2_3:3331054-3331073 None:intergenic 40.0%
GGAACTGCCGAAAATCAAAA+AGG - chr2_3:3331306-3331325 Msa0271810:intron 40.0%
!! AACTGTTTTTCTCTCCCTCA+TGG - chr2_3:3331386-3331405 Msa0271810:intron 40.0%
! TTTTTCTCTGCCAACCATGA+GGG + chr2_3:3331403-3331422 None:intergenic 40.0%
GCAGAGAAAAACCAGGTAAT+CGG - chr2_3:3331412-3331431 Msa0271810:intron 40.0%
GTAATCGGTAATCCCCAATT+TGG - chr2_3:3331427-3331446 Msa0271810:intron 40.0%
!! CCCCTTTTTAAGCCAAATTG+GGG + chr2_3:3331442-3331461 None:intergenic 40.0%
! CCCCAATTTGGCTTAAAAAG+GGG - chr2_3:3331439-3331458 Msa0271810:intron 40.0%
!! CCCCCTTTTTAAGCCAAATT+GGG + chr2_3:3331443-3331462 None:intergenic 40.0%
! CCCAATTTGGCTTAAAAAGG+GGG - chr2_3:3331440-3331459 Msa0271810:intron 40.0%
!! ACCCCCTTTTTAAGCCAAAT+TGG + chr2_3:3331444-3331463 None:intergenic 40.0%
GGATGTTGAAGGTCATTTGT+TGG - chr2_3:3331639-3331658 Msa0271810:intron 40.0%
! TCAAGCCTTGTAAGACCTAT+TGG + chr2_3:3331687-3331706 None:intergenic 40.0%
CAAGGCTTGAGAAGGTTAAA+AGG - chr2_3:3331697-3331716 Msa0271810:intron 40.0%
TTGAGAAGGTTAAAAGGCAG+CGG - chr2_3:3331703-3331722 Msa0271810:intron 40.0%
TGTATTTGACCAGCTAACTG+AGG - chr2_3:3331762-3331781 Msa0271810:CDS 40.0%
TGAGGATGCTATGAAGCTTA+TGG - chr2_3:3331780-3331799 Msa0271810:CDS 40.0%
GCTATGAAGCTTATGGAGAA+TGG - chr2_3:3331787-3331806 Msa0271810:CDS 40.0%
! GGCTTTGTAGATATTGTCCA+TGG - chr2_3:3331836-3331855 Msa0271810:CDS 40.0%
!! ACAAAGACAAAGGTACCATC+AGG + chr2_3:3331887-3331906 None:intergenic 40.0%
GACCATAATACCAACACAAG+TGG + chr2_3:3332222-3332241 None:intergenic 40.0%
! CTTGTGTTGGTATTATGGTC+GGG - chr2_3:3332222-3332241 Msa0271810:intron 40.0%
! GCTTTAAACTTAGGGGAAGT+TGG - chr2_3:3332317-3332336 Msa0271810:intron 40.0%
! CAAGAGAAGAAGGCATATCT+GGG - chr2_3:3332525-3332544 Msa0271810:CDS 40.0%
GATATGTTTGCCGATGATGA+CGG - chr2_3:3332563-3332582 Msa0271810:CDS 40.0%
TTCATCTGTAGATGGCTTAG+TGG + chr2_3:3332597-3332616 None:intergenic 40.0%
!! TCGGTTCTACTTTTCTTTCC+AGG - chr2_3:3332745-3332764 Msa0271810:CDS 40.0%
!! GTTCTACTTTTCTTTCCAGG+CGG - chr2_3:3332748-3332767 Msa0271810:CDS 40.0%
CATCAGTTGTTTATTGGTCC+AGG - chr2_3:3332966-3332985 Msa0271810:intron 40.0%
ACTGCTGCTGTAATAATACC+TGG + chr2_3:3332987-3333006 None:intergenic 40.0%
GAGCAATAAAGCCCTGTATT+TGG + chr2_3:3333028-3333047 None:intergenic 40.0%
TTTATTGCTCTGCAGCATCA+GGG - chr2_3:3333038-3333057 Msa0271810:intron 40.0%
GCACAAGCACAATCATACAT+CGG + chr2_3:3333294-3333313 None:intergenic 40.0%
CTTCTTCTCCCTCTAACTAT+TGG + chr2_3:3333337-3333356 None:intergenic 40.0%
AGACTATGTCTCGTTCTCAA+TGG + chr2_3:3333383-3333402 None:intergenic 40.0%
ATTTAGCCAACCCTACCTAA+TGG - chr2_3:3333425-3333444 Msa0271810:intron 40.0%
! GGGACATTTTTCCATTAGGT+AGG + chr2_3:3333439-3333458 None:intergenic 40.0%
GCAACAAGCATACAACTAGT+GGG + chr2_3:3333459-3333478 None:intergenic 40.0%
AGCAACAAGCATACAACTAG+TGG + chr2_3:3333460-3333479 None:intergenic 40.0%
GAGAATCCTACCTAGAAAAG+AGG - chr2_3:3333513-3333532 Msa0271810:intron 40.0%
! TAAACCGCTACCTCTTTTCT+AGG + chr2_3:3333526-3333545 None:intergenic 40.0%
GCGATTGAATGAGATGACAT+TGG + chr2_3:3333773-3333792 None:intergenic 40.0%
ACATGCCCATCAACTCAAAT+TGG + chr2_3:3333964-3333983 None:intergenic 40.0%
TCACAATCATTGTCTTCCAG+TGG - chr2_3:3334016-3334035 Msa0271810:CDS 40.0%
! TGTTTCTGTACATATGCCAC+TGG + chr2_3:3334035-3334054 None:intergenic 40.0%
CCCACACTTTCTACTTGTTT+AGG - chr2_3:3334080-3334099 Msa0271810:CDS 40.0%
ACTTGTTTAGGTGCTAATGC+CGG - chr2_3:3334092-3334111 Msa0271810:CDS 40.0%
AAAGGCAGAAGAAAAACTGC+CGG + chr2_3:3334114-3334133 None:intergenic 40.0%
AACATGCTATTGGAACTTGC+AGG + chr2_3:3334156-3334175 None:intergenic 40.0%
TTTCAGCTTCTACACAGACG+AGG + chr2_3:3329131-3329150 None:intergenic 45.0%
TTCCTTCCAGAGAGAAGAAG+CGG + chr2_3:3329162-3329181 None:intergenic 45.0%
TGGAAGGAAGCTTCAATGTC+AGG - chr2_3:3329173-3329192 Msa0271810:three_prime_UTR 45.0%
GAAGCTTCAATGTCAGGTGA+AGG - chr2_3:3329179-3329198 Msa0271810:three_prime_UTR 45.0%
CGTCATCGTCTAAAGGAAGA+GGG + chr2_3:3329229-3329248 None:intergenic 45.0%
TCGTCATCGTCTAAAGGAAG+AGG + chr2_3:3329230-3329249 None:intergenic 45.0%
GTGGAATCGTCATCGTCTAA+AGG + chr2_3:3329236-3329255 None:intergenic 45.0%
AAAGAGGGTTAGGTTTCCGA+AGG - chr2_3:3329382-3329401 Msa0271810:three_prime_UTR 45.0%
AAGAGGGTTAGGTTTCCGAA+GGG - chr2_3:3329383-3329402 Msa0271810:three_prime_UTR 45.0%
GGAGAAAGTAATTGCTGAGG+AGG - chr2_3:3329436-3329455 Msa0271810:three_prime_UTR 45.0%
!! CGAAAATGGAGGTATCTCCA+AGG - chr2_3:3329544-3329563 Msa0271810:three_prime_UTR 45.0%
TATCAACAAGATCGGCCACA+TGG + chr2_3:3330219-3330238 None:intergenic 45.0%
CTCATAAGTCCTAGCTCAAC+TGG - chr2_3:3330253-3330272 Msa0271810:intron 45.0%
AACTCACACACACAAAGTGG+AGG + chr2_3:3330334-3330353 None:intergenic 45.0%
AAGGATTCTTGCAGGATGCA+TGG - chr2_3:3330896-3330915 Msa0271810:CDS 45.0%
! GAGGTTGATCCTAGATATGC+TGG - chr2_3:3330931-3330950 Msa0271810:CDS 45.0%
GGCAACAAATGATGAAGAGG+AGG - chr2_3:3330966-3330985 Msa0271810:CDS 45.0%
! GTTTTTCTCTCCCTCATGGT+TGG - chr2_3:3331390-3331409 Msa0271810:intron 45.0%
! GTTTTTCTCTGCCAACCATG+AGG + chr2_3:3331404-3331423 None:intergenic 45.0%
ATGGTTGGCAGAGAAAAACC+AGG - chr2_3:3331405-3331424 Msa0271810:intron 45.0%
! ATTGGGGATTACCGATTACC+TGG + chr2_3:3331426-3331445 None:intergenic 45.0%
AGGTCTTACAAGGCTTGAGA+AGG - chr2_3:3331689-3331708 Msa0271810:intron 45.0%
TCATAGCATCCTCAGTTAGC+TGG + chr2_3:3331774-3331793 None:intergenic 45.0%
GCAGGACAACACAAAGACAA+AGG + chr2_3:3331897-3331916 None:intergenic 45.0%
! AATCTAGAAGCACAGCAAGC+AGG + chr2_3:3331915-3331934 None:intergenic 45.0%
! GCAAGAGAAGAAGGCATATC+TGG - chr2_3:3332524-3332543 Msa0271810:CDS 45.0%
! AGAAGGCATATCTGGGAACA+CGG - chr2_3:3332532-3332551 Msa0271810:CDS 45.0%
CTTTATTGCTCTGCAGCATC+AGG - chr2_3:3333037-3333056 Msa0271810:intron 45.0%
! GGTTGGCTAAATGTGTCAAC+AGG + chr2_3:3333417-3333436 None:intergenic 45.0%
CCTACCTAGAAAAGAGGTAG+CGG - chr2_3:3333519-3333538 Msa0271810:intron 45.0%
GTGATTCTTACAGGGCTTGA+GGG + chr2_3:3333666-3333685 None:intergenic 45.0%
TGTGATTCTTACAGGGCTTG+AGG + chr2_3:3333667-3333686 None:intergenic 45.0%
AGCCCTGTAAGAATCACATG+AGG - chr2_3:3333669-3333688 Msa0271810:intron 45.0%
GCCCTGTAAGAATCACATGA+GGG - chr2_3:3333670-3333689 Msa0271810:intron 45.0%
CCCCTCATGTGATTCTTACA+GGG + chr2_3:3333674-3333693 None:intergenic 45.0%
CCCTGTAAGAATCACATGAG+GGG - chr2_3:3333671-3333690 Msa0271810:intron 45.0%
GAGTTCTCAAGTTTGAACCC+AGG + chr2_3:3333732-3333751 None:intergenic 45.0%
GGGTTCAAACTTGAGAACTC+TGG - chr2_3:3333732-3333751 Msa0271810:intron 45.0%
!! ATATTATATAAAATTAACAA+TGG + chr2_3:3331537-3331556 None:intergenic 5.0%
!!! ATAATAAGAAAATTATTTTT+TGG - chr2_3:3332281-3332300 Msa0271810:intron 5.0%
GTTGAACCGCTTCTTCTCTC+TGG - chr2_3:3329153-3329172 Msa0271810:three_prime_UTR 50.0%
AACCGCTTCTTCTCTCTGGA+AGG - chr2_3:3329157-3329176 Msa0271810:three_prime_UTR 50.0%
AGAGGGTTAGGTTTCCGAAG+GGG - chr2_3:3329384-3329403 Msa0271810:three_prime_UTR 50.0%
AGGTTTCCGAAGGGGAAGAA+AGG - chr2_3:3329392-3329411 Msa0271810:three_prime_UTR 50.0%
GGTTTCCGAAGGGGAAGAAA+GGG - chr2_3:3329393-3329412 Msa0271810:three_prime_UTR 50.0%
GGTTTCCCTTTCTTCCCCTT+CGG + chr2_3:3329401-3329420 None:intergenic 50.0%
GACGTCCGGCCTAACAATTT+CGG + chr2_3:3330287-3330306 None:intergenic 50.0%
!! ACACACAAAGTGGAGGTACC+GGG + chr2_3:3330327-3330346 None:intergenic 50.0%
! CACACACAAAGTGGAGGTAC+CGG + chr2_3:3330328-3330347 None:intergenic 50.0%
!! GAGGTTTTTGAGCGTGAAGC+AGG - chr2_3:3332018-3332037 Msa0271810:intron 50.0%
! AACTTAGGGGAAGTTGGTCC+TGG - chr2_3:3332323-3332342 Msa0271810:intron 50.0%
! ACTTAGGGGAAGTTGGTCCT+GGG - chr2_3:3332324-3332343 Msa0271810:intron 50.0%
TTGGTCAGGGCAAGAGAAGA+AGG - chr2_3:3332515-3332534 Msa0271810:intron 50.0%
! CCGCTACCTCTTTTCTAGGT+AGG + chr2_3:3333522-3333541 None:intergenic 50.0%
GCCCCTCATGTGATTCTTAC+AGG + chr2_3:3333675-3333694 None:intergenic 50.0%
!! TGAGTTGATGGGCATGTCTC+AGG - chr2_3:3333967-3333986 Msa0271810:intron 50.0%
!! GAGTTGATGGGCATGTCTCA+GGG - chr2_3:3333968-3333987 Msa0271810:intron 50.0%
!! AGTTGATGGGCATGTCTCAG+GGG - chr2_3:3333969-3333988 Msa0271810:intron 50.0%
AACTTGTGATCGTGCTGAGC+AGG - chr2_3:3334198-3334217 Msa0271810:intron 50.0%
CTGCGAAAGAGCGGGTGAAA+CGG - chr2_3:3329489-3329508 Msa0271810:three_prime_UTR 55.0%
TTAGGCCGGACGTCATGACT+GGG - chr2_3:3330293-3330312 Msa0271810:intron 55.0%
!! CACACAAAGTGGAGGTACCG+GGG + chr2_3:3330326-3330345 None:intergenic 55.0%
GGCAGCTTGTCCGTCATCAT+CGG + chr2_3:3332576-3332595 None:intergenic 55.0%
TCACTTTGCAAAGCTCCGCC+TGG + chr2_3:3332766-3332785 None:intergenic 55.0%
GCTCTGCAGCATCAGGGAAA+TGG - chr2_3:3333044-3333063 Msa0271810:intron 55.0%
TCGTGCTGAGCAGGCTGTTA+TGG - chr2_3:3334207-3334226 Msa0271810:intron 55.0%
GAAGGTTCATCTCGCAGCCG+CGG - chr2_3:3329197-3329216 Msa0271810:three_prime_UTR 60.0%
!! AAGGAAGAGGGCGTTTGCCG+CGG + chr2_3:3329217-3329236 None:intergenic 60.0%
CGCTCTTTCGCAGCAACAGC+CGG + chr2_3:3329482-3329501 None:intergenic 60.0%
CGGCTGTTGCTGCGAAAGAG+CGG - chr2_3:3329480-3329499 Msa0271810:three_prime_UTR 60.0%
GGCTGTTGCTGCGAAAGAGC+GGG - chr2_3:3329481-3329500 Msa0271810:three_prime_UTR 60.0%
CGAAAGAGCGGGTGAAACGG+AGG - chr2_3:3329492-3329511 Msa0271810:three_prime_UTR 60.0%
GTTAGGCCGGACGTCATGAC+TGG - chr2_3:3330292-3330311 Msa0271810:intron 60.0%
TAGGCCGGACGTCATGACTG+GGG - chr2_3:3330294-3330313 Msa0271810:intron 60.0%
CGAACCCCAGTCATGACGTC+CGG + chr2_3:3330301-3330320 None:intergenic 60.0%
CATGACTGGGGTTCGAACCC+CGG - chr2_3:3330306-3330325 Msa0271810:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 3329087 3334471 3329087 ID=Msa0271810;Name=Msa0271810
chr2_3 mRNA 3329087 3334471 3329087 ID=Msa0271810-mRNA-1;Parent=Msa0271810;Name=Msa0271810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=101|0.88|0.9|1|1|1|10|497|372
chr2_3 exon 3329087 3329650 3329087 ID=Msa0271810-mRNA-1:exon:1674;Parent=Msa0271810-mRNA-1
chr2_3 exon 3330493 3330570 3330493 ID=Msa0271810-mRNA-1:exon:1673;Parent=Msa0271810-mRNA-1
chr2_3 exon 3330749 3330791 3330749 ID=Msa0271810-mRNA-1:exon:1672;Parent=Msa0271810-mRNA-1
chr2_3 exon 3330890 3331105 3330890 ID=Msa0271810-mRNA-1:exon:1671;Parent=Msa0271810-mRNA-1
chr2_3 exon 3331519 3331560 3331519 ID=Msa0271810-mRNA-1:exon:1670;Parent=Msa0271810-mRNA-1
chr2_3 exon 3331741 3331867 3331741 ID=Msa0271810-mRNA-1:exon:1669;Parent=Msa0271810-mRNA-1
chr2_3 exon 3332517 3332648 3332517 ID=Msa0271810-mRNA-1:exon:1668;Parent=Msa0271810-mRNA-1
chr2_3 exon 3332739 3332864 3332739 ID=Msa0271810-mRNA-1:exon:1667;Parent=Msa0271810-mRNA-1
chr2_3 exon 3333972 3334179 3333972 ID=Msa0271810-mRNA-1:exon:1666;Parent=Msa0271810-mRNA-1
chr2_3 exon 3334291 3334471 3334291 ID=Msa0271810-mRNA-1:exon:1665;Parent=Msa0271810-mRNA-1
chr2_3 five_prime_UTR 3334371 3334471 3334371 ID=Msa0271810-mRNA-1:five_prime_utr;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3334291 3334370 3334291 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3333972 3334179 3333972 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3332739 3332864 3332739 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3332517 3332648 3332517 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3331741 3331867 3331741 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3331519 3331560 3331519 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3330890 3331105 3330890 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3330749 3330791 3330749 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3330493 3330570 3330493 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 CDS 3329584 3329650 3329584 ID=Msa0271810-mRNA-1:cds;Parent=Msa0271810-mRNA-1
chr2_3 three_prime_UTR 3329087 3329583 3329087 ID=Msa0271810-mRNA-1:three_prime_utr;Parent=Msa0271810-mRNA-1
Gene Sequence

>Msa0271810

ATGTCAGGTGAAGGTTCATCTCGCAGCCGCGGCAAACGCCCTCTTCCTTTAGACGATGACGATTCCACCAAAAATCCACCAGCAAAGAGGGTTAGGTTTCCGAAGGGGAAGAAAGGGAAACCAGTTGAAGTAATAGTGGAGAAAGTAATTGCTGAGGAGGATGTCAATAATTTGTCGAATCCGGCTGTTGCTGCGAAAGAGCGGGTGAAACGGAGGAATCAAATTACTGCTGAGCTTATCAGTGACGAAAATGGAGGTATCTCCAAGGTTGCTGAAGTTACATATAAGGAAAATGAGAATTTTGTTGAGGACGGAATTCAGATTGAGCCTTTCAACCTAGATAAAGAAAGGGAAGAAGGTTATTTTGATGCATCCGGAAACTTTGTTGAATATGTAAGAGATAATGAGATTAAGGATGCATGGCTTGATAATGTTGAGGTTGATCCTAGATATGCTGGATTAAGCTCTGTGGCAACAAATGATGAAGAGGAGGTCCAAGAGCTTTCTTCTAAAGATGTGGCAATCATGAAGAGGCGCATTGCAAATGTCTTACAAGGCTTGAGAAGGTTAAAAGGCAGCGGTGATAGAAAGACAAAAATGTCTGGTGAGACTAAGATTGTATTTGACCAGCTAACTGAGGATGCTATGAAGCTTATGGAGAATGGTGAATTCAATGTTTATCATGAACATAAAGAGGTTTTTGAGCGTGAAGCAGGAGCACCAATTACTAATGCCTATGCGTTTTACAATCTCTCTCTTTCAGATGGATATGAGAAATTGGTCAGGGCAAGAGAAGAAGGCATATCTGGGAACACGGATGATTTTGATATGTTTGCCGATGATGACGGACAAGCTGCCACTAAGCCATCTACAGATGAAAATAATGCAGTTAGTGAACCATCATCAGATGCCATTAATTCTTCTACAGAGGGCGGAGCTTTGCAAAGTGATTATGTGTATGATGAATCTTCTGGGTATTATTACAGCAGCAGTTTGGGCTATTATTATGATCCAAATACAGGGCTTTATTGCTCTGCAGCATCAGGGAAATGGTACTCATTTAATGAAGAGACTAGCACCTATGATGAAGTTAATGAGGTTGCATCCAATTTGAGTTGA

Protein sequence

>Msa0271810

MSGEGSSRSRGKRPLPLDDDDSTKNPPAKRVRFPKGKKGKPVEVIVEKVIAEEDVNNLSNPAVAAKERVKRRNQITAELISDENGGISKVAEVTYKENENFVEDGIQIEPFNLDKEREEGYFDASGNFVEYVRDNEIKDAWLDNVEVDPRYAGLSSVATNDEEEVQELSSKDVAIMKRRIANVLQGLRRLKGSGDRKTKMSGETKIVFDQLTEDAMKLMENGEFNVYHEHKEVFEREAGAPITNAYAFYNLSLSDGYEKLVRAREEGISGNTDDFDMFADDDGQAATKPSTDENNAVSEPSSDAINSSTEGGALQSDYVYDESSGYYYSSSLGYYYDPNTGLYCSAASGKWYSFNEETSTYDEVNEVASNLS*