AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617580 MtrunA17_Chr8g0377671 97.561 287 7 0 1 287 1 287 0.0 551
Msa0617580 MtrunA17_Chr8g0377191 71.144 201 58 0 13 213 5 205 1.17e-96 283
Msa0617580 MtrunA17_Chr8g0377191 56.329 158 69 0 113 270 13 170 9.99e-53 171
Msa0617580 MtrunA17_Chr8g0377191 50.000 114 57 0 156 269 10 123 8.24e-29 109
Msa0617580 MtrunA17_Chr8g0385241 46.471 340 102 3 12 271 2 341 1.72e-84 259
Msa0617580 MtrunA17_Chr8g0385241 38.889 162 75 2 21 158 182 343 1.22e-22 96.7
Msa0617580 MtrunA17_Chr4g0059911 51.737 259 123 2 15 271 4 262 3.04e-80 247
Msa0617580 MtrunA17_Chr8g0382971 42.216 334 131 4 15 286 20 353 5.20e-69 218
Msa0617580 MtrunA17_Chr8g0377211 69.481 154 46 1 134 287 19 171 2.28e-68 209
Msa0617580 MtrunA17_Chr8g0377211 58.757 177 49 2 1 177 1 153 9.03e-61 190
Msa0617580 MtrunA17_Chr2g0316631 43.561 264 149 0 15 278 31 294 3.32e-68 214
Msa0617580 MtrunA17_Chr2g0316631 38.500 200 123 0 20 219 105 304 3.82e-43 149
Msa0617580 MtrunA17_Chr2g0316611 42.023 257 149 0 15 271 31 287 3.20e-66 211
Msa0617580 MtrunA17_Chr2g0316611 40.873 252 149 0 20 271 105 356 8.05e-59 192
Msa0617580 MtrunA17_Chr2g0316611 39.303 201 122 0 19 219 173 373 2.01e-41 146
Msa0617580 MtrunA17_Chr8g0380791 53.646 192 89 0 8 199 1 192 6.66e-64 214
Msa0617580 MtrunA17_Chr8g0380791 40.252 159 95 0 111 269 12 170 1.14e-31 124
Msa0617580 MtrunA17_Chr8g0380791 38.938 113 69 0 156 268 11 123 1.77e-15 76.6
Msa0617580 MtrunA17_Chr6g0467061 44.130 247 138 0 20 266 88 334 3.98e-62 199
Msa0617580 MtrunA17_Chr6g0467061 38.384 297 133 3 14 283 13 286 2.41e-57 187
Msa0617580 MtrunA17_Chr6g0467061 43.575 179 101 0 20 198 157 335 1.29e-38 138
Msa0617580 MtrunA17_Chr8g0383331 61.585 164 62 1 109 271 1 164 2.02e-61 192
Msa0617580 MtrunA17_Chr8g0383331 58.333 156 64 1 63 217 1 156 2.15e-56 179
Msa0617580 MtrunA17_Chr8g0383331 53.061 147 69 0 20 166 4 150 5.49e-46 152
Msa0617580 MtrunA17_Chr8g0383551 41.549 284 105 7 13 264 20 274 4.12e-54 179
Msa0617580 MtrunA17_Chr8g0383551 34.513 226 91 5 85 269 24 233 3.33e-26 105
Msa0617580 MtrunA17_Chr5g0424111 43.094 181 103 0 14 194 191 371 3.06e-40 145
Msa0617580 MtrunA17_Chr5g0424111 39.560 182 103 1 95 269 173 354 2.40e-34 129
Msa0617580 MtrunA17_Chr5g0424111 37.853 177 110 0 65 241 196 372 8.42e-31 119
Msa0617580 MtrunA17_Chr8g0377221 34.934 229 137 3 18 244 3 221 2.00e-39 139
Msa0617580 MtrunA17_Chr8g0377221 37.288 118 74 0 154 271 1 118 4.83e-19 84.7
Msa0617580 MtrunA17_Chr8g0377221 29.101 189 119 2 89 262 5 193 5.73e-17 79.0
Msa0617580 MtrunA17_Chr8g0353121 38.537 205 124 1 8 210 39 243 4.60e-39 145
Msa0617580 MtrunA17_Chr8g0353121 35.426 223 138 3 62 281 51 270 3.85e-30 119
Msa0617580 MtrunA17_Chr8g0353121 33.520 179 113 3 98 271 12 189 4.14e-18 84.3
Msa0617580 MtrunA17_Chr1g0180261 40.323 186 111 0 14 199 45 230 2.63e-37 140
Msa0617580 MtrunA17_Chr1g0180261 38.798 183 112 0 63 245 48 230 4.78e-30 119
Msa0617580 MtrunA17_Chr1g0180261 36.250 160 102 0 109 268 48 207 3.31e-25 105
Msa0617580 MtrunA17_Chr1g0180261 30.657 137 95 0 134 270 50 186 2.01e-13 70.5
Msa0617580 MtrunA17_Chr5g0424301 40.113 177 106 0 7 183 56 232 9.13e-37 138
Msa0617580 MtrunA17_Chr5g0424301 35.220 159 103 0 112 270 69 227 1.68e-25 105
Msa0617580 MtrunA17_Chr5g0424301 37.681 138 86 0 134 271 68 205 3.48e-22 96.3
Msa0617580 MtrunA17_Chr5g0424301 29.439 214 122 3 39 252 48 232 5.30e-20 90.1
Msa0617580 MtrunA17_Chr3g0082501 36.765 204 119 1 16 209 60 263 1.58e-36 138
Msa0617580 MtrunA17_Chr3g0082501 34.597 211 137 1 67 277 65 274 9.92e-31 121
Msa0617580 MtrunA17_Chr1g0171491 40.217 184 110 0 16 199 57 240 9.25e-36 135
Msa0617580 MtrunA17_Chr1g0171491 32.456 228 147 2 67 287 62 289 7.95e-30 118
Msa0617580 MtrunA17_Chr1g0171491 36.970 165 102 1 104 268 55 217 1.65e-26 108
Msa0617580 MtrunA17_Chr1g0171491 34.975 203 130 1 27 229 47 247 3.74e-26 108
Msa0617580 MtrunA17_Chr7g0233351 40.556 180 107 0 17 196 189 368 3.58e-35 131
Msa0617580 MtrunA17_Chr7g0233351 39.884 173 104 0 44 216 193 365 4.85e-32 123
Msa0617580 MtrunA17_Chr7g0233351 35.294 187 121 0 62 248 188 374 8.90e-32 122
Msa0617580 MtrunA17_Chr7g0233351 39.506 162 98 0 108 269 188 349 1.37e-29 116
Msa0617580 MtrunA17_Chr7g0233351 36.571 175 111 0 90 264 193 367 9.29e-28 111
Msa0617580 MtrunA17_Chr3g0114791 39.560 182 108 1 14 193 177 358 6.94e-34 127
Msa0617580 MtrunA17_Chr3g0114791 35.326 184 119 0 53 236 172 355 1.72e-30 118
Msa0617580 MtrunA17_Chr3g0114791 37.423 163 102 0 106 268 179 341 5.39e-29 114
Msa0617580 MtrunA17_Chr3g0114791 32.500 200 132 1 84 283 180 376 2.40e-25 104
Msa0617580 MtrunA17_Chr3g0114791 37.391 115 72 0 148 262 175 289 7.66e-16 77.0
Msa0617580 MtrunA17_Chr8g0336161 39.891 183 110 0 14 196 191 373 7.12e-34 128
Msa0617580 MtrunA17_Chr8g0336161 36.957 184 116 0 65 248 196 379 1.09e-30 119
Msa0617580 MtrunA17_Chr8g0336161 39.506 162 98 0 108 269 193 354 1.65e-27 110
Msa0617580 MtrunA17_Chr4g0055371 39.205 176 107 0 41 216 170 345 2.29e-32 123
Msa0617580 MtrunA17_Chr4g0055371 38.889 162 99 0 108 269 168 329 1.62e-27 110
Msa0617580 MtrunA17_Chr4g0055371 33.514 185 123 0 58 242 164 348 2.67e-27 109
Msa0617580 MtrunA17_Chr4g0055371 35.227 176 114 0 89 264 172 347 1.22e-25 105
Msa0617580 MtrunA17_Chr3g0115111 37.158 183 114 1 8 189 45 227 3.72e-32 125
Msa0617580 MtrunA17_Chr3g0115111 32.653 196 129 2 76 270 23 216 4.78e-27 110
Msa0617580 MtrunA17_Chr3g0115111 33.032 221 138 4 39 258 35 246 3.07e-26 108
Msa0617580 MtrunA17_Chr3g0115111 36.471 170 102 2 21 189 82 246 1.73e-22 97.4
Msa0617580 MtrunA17_Chr3g0115111 35.971 139 88 1 134 271 56 194 8.55e-20 89.4
Msa0617580 MtrunA17_Chr7g0256301 40.113 177 106 0 14 190 65 241 9.54e-32 124
Msa0617580 MtrunA17_Chr7g0256301 38.217 157 97 0 112 268 71 227 2.43e-24 102
Msa0617580 MtrunA17_Chr7g0256301 35.673 171 110 0 66 236 71 241 3.70e-23 99.4
Msa0617580 MtrunA17_Chr7g0256301 33.918 171 113 0 89 259 71 241 1.20e-21 94.7
Msa0617580 MtrunA17_Chr8g0377201 64.368 87 31 0 201 287 1 87 1.69e-31 112
Msa0617580 MtrunA17_Chr8g0377201 61.290 62 24 0 109 170 1 62 8.40e-17 73.9
Msa0617580 MtrunA17_Chr8g0377201 54.545 66 30 0 63 128 1 66 8.66e-17 73.9
Msa0617580 MtrunA17_Chr8g0377201 68.889 45 14 0 19 63 26 70 2.89e-13 64.3
Msa0617580 MtrunA17_Chr8g0377201 43.284 67 38 0 89 155 4 70 3.64e-11 58.5
Msa0617580 MtrunA17_Chr3g0131001 41.714 175 102 0 16 190 51 225 4.08e-31 122
Msa0617580 MtrunA17_Chr3g0131001 36.723 177 112 0 64 240 53 229 8.04e-21 92.4
Msa0617580 MtrunA17_Chr3g0131001 34.503 171 112 0 89 259 55 225 3.89e-19 87.4
Msa0617580 MtrunA17_Chr3g0131001 37.107 159 100 0 112 270 55 213 4.78e-19 87.0
Msa0617580 MtrunA17_Chr3g0131001 38.406 138 85 0 134 271 54 191 2.97e-18 84.7
Msa0617580 MtrunA17_Chr8g0385201 37.158 183 113 2 14 195 24 205 9.04e-29 115
Msa0617580 MtrunA17_Chr8g0385201 38.125 160 98 1 112 270 30 189 3.07e-27 110
Msa0617580 MtrunA17_Chr8g0385201 36.041 197 120 4 67 258 31 226 4.53e-25 104
Msa0617580 MtrunA17_Chr5g0398011 46.903 113 60 0 18 130 33 145 1.78e-26 101
Msa0617580 MtrunA17_Chr5g0398011 37.607 117 73 0 155 271 32 148 1.73e-20 85.5
Msa0617580 MtrunA17_Chr5g0398011 32.456 114 77 0 109 222 32 145 4.04e-13 65.9
Msa0617580 MtrunA17_Chr5g0398011 29.655 145 96 1 32 176 7 145 5.62e-13 65.5
Msa0617580 MtrunA17_Chr5g0398021 45.192 104 57 0 20 123 13 116 1.40e-23 94.0
Msa0617580 MtrunA17_Chr5g0398021 35.338 133 86 0 155 287 10 142 3.96e-20 84.7
Msa0617580 MtrunA17_Chr5g0398021 33.621 116 77 0 102 217 3 118 6.35e-16 73.6
Msa0617580 MtrunA17_Chr5g0398021 37.383 107 67 0 63 169 10 116 5.35e-15 70.9
Msa0617580 MtrunA17_Chr5g0398021 29.730 111 78 0 81 191 5 115 3.53e-14 68.6
Msa0617580 MtrunA17_Chr3g0085921 63.333 60 22 0 196 255 2 61 1.92e-19 81.6
Msa0617580 MtrunA17_Chr3g0085921 60.000 60 24 0 150 209 2 61 4.92e-18 77.8
Msa0617580 MtrunA17_Chr3g0085921 55.932 59 26 0 105 163 3 61 9.56e-17 74.3
Msa0617580 MtrunA17_Chr3g0085921 57.627 59 25 0 59 117 3 61 7.59e-16 72.0
Msa0617580 MtrunA17_Chr1g0210831 37.069 116 73 0 78 193 625 740 2.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617580 AT1G60890.2 48.677 189 97 0 16 204 19 207 5.30e-54 187
Msa0617580 AT1G60890.2 41.209 182 107 0 65 246 22 203 5.14e-40 148
Msa0617580 AT1G60890.2 40.881 159 94 0 111 269 22 180 3.41e-33 129
Msa0617580 AT1G60890.1 48.677 189 97 0 16 204 7 195 5.56e-54 187
Msa0617580 AT1G60890.1 41.209 182 107 0 65 246 10 191 6.28e-40 148
Msa0617580 AT1G60890.1 40.881 159 94 0 111 269 10 168 3.96e-33 128
Msa0617580 AT1G10900.2 45.503 189 103 0 16 204 7 195 2.87e-49 174
Msa0617580 AT1G10900.2 38.798 183 112 0 64 246 9 191 7.14e-37 139
Msa0617580 AT1G10900.2 38.750 160 98 0 110 269 9 168 8.42e-30 119
Msa0617580 AT1G10900.1 45.503 189 103 0 16 204 7 195 2.87e-49 174
Msa0617580 AT1G10900.1 38.798 183 112 0 64 246 9 191 7.14e-37 139
Msa0617580 AT1G10900.1 38.750 160 98 0 110 269 9 168 8.42e-30 119
Msa0617580 AT1G10900.3 45.503 189 103 0 16 204 7 195 2.87e-49 174
Msa0617580 AT1G10900.3 38.798 183 112 0 64 246 9 191 7.14e-37 139
Msa0617580 AT1G10900.3 38.750 160 98 0 110 269 9 168 8.42e-30 119
Msa0617580 AT1G21980.1 41.714 175 102 0 16 190 72 246 9.11e-39 144
Msa0617580 AT1G21980.1 36.216 185 114 1 56 236 62 246 3.70e-30 120
Msa0617580 AT1G21980.1 37.736 159 99 0 112 270 76 234 2.77e-29 117
Msa0617580 AT3G07960.2 40.000 185 111 0 16 200 23 207 1.57e-38 143
Msa0617580 AT3G07960.2 40.764 157 93 0 112 268 27 183 1.36e-31 123
Msa0617580 AT3G07960.2 34.634 205 121 2 67 265 28 225 2.33e-31 123
Msa0617580 AT3G07960.2 38.938 113 69 0 20 132 96 208 1.79e-14 73.9
Msa0617580 AT3G07960.4 40.000 185 111 0 16 200 23 207 1.57e-38 143
Msa0617580 AT3G07960.4 40.764 157 93 0 112 268 27 183 1.36e-31 123
Msa0617580 AT3G07960.4 34.634 205 121 2 67 265 28 225 2.33e-31 123
Msa0617580 AT3G07960.4 38.938 113 69 0 20 132 96 208 1.79e-14 73.9
Msa0617580 AT3G07960.3 40.000 185 111 0 16 200 23 207 2.20e-38 142
Msa0617580 AT3G07960.3 40.764 157 93 0 112 268 27 183 1.97e-31 123
Msa0617580 AT3G07960.3 34.634 205 121 2 67 265 28 225 3.50e-31 122
Msa0617580 AT3G07960.3 38.938 113 69 0 20 132 96 208 1.86e-14 73.9
Msa0617580 AT3G09920.3 41.935 186 108 0 14 199 47 232 2.91e-38 143
Msa0617580 AT3G09920.3 39.891 183 110 0 63 245 50 232 1.76e-32 126
Msa0617580 AT3G09920.3 39.752 161 97 0 109 269 50 210 1.78e-26 109
Msa0617580 AT3G09920.4 41.935 186 108 0 14 199 47 232 2.91e-38 143
Msa0617580 AT3G09920.4 39.891 183 110 0 63 245 50 232 1.76e-32 126
Msa0617580 AT3G09920.4 39.752 161 97 0 109 269 50 210 1.78e-26 109
Msa0617580 AT3G09920.2 41.935 186 108 0 14 199 47 232 2.91e-38 143
Msa0617580 AT3G09920.2 39.891 183 110 0 63 245 50 232 1.76e-32 126
Msa0617580 AT3G09920.2 39.752 161 97 0 109 269 50 210 1.78e-26 109
Msa0617580 AT3G09920.1 41.935 186 108 0 14 199 47 232 2.91e-38 143
Msa0617580 AT3G09920.1 39.891 183 110 0 63 245 50 232 1.76e-32 126
Msa0617580 AT3G09920.1 39.752 161 97 0 109 269 50 210 1.78e-26 109
Msa0617580 AT3G07960.1 40.000 185 111 0 16 200 23 207 4.35e-38 142
Msa0617580 AT3G07960.1 40.764 157 93 0 112 268 27 183 3.01e-31 123
Msa0617580 AT3G07960.1 34.634 205 121 2 67 265 28 225 5.40e-31 122
Msa0617580 AT3G07960.1 38.938 113 69 0 20 132 96 208 2.58e-14 73.6
Msa0617580 AT3G56960.2 35.961 203 121 1 16 209 68 270 3.00e-35 134
Msa0617580 AT3G56960.2 35.196 179 116 0 67 245 73 251 7.51e-29 116
Msa0617580 AT3G56960.2 36.264 182 105 2 87 268 58 228 3.13e-28 114
Msa0617580 AT3G56960.2 33.514 185 123 0 89 273 72 256 9.03e-25 104
Msa0617580 AT3G56960.1 35.961 203 121 1 16 209 68 270 3.00e-35 134
Msa0617580 AT3G56960.1 35.196 179 116 0 67 245 73 251 7.51e-29 116
Msa0617580 AT3G56960.1 36.264 182 105 2 87 268 58 228 3.13e-28 114
Msa0617580 AT3G56960.1 33.514 185 123 0 89 273 72 256 9.03e-25 104
Msa0617580 AT2G41210.1 36.275 204 121 1 16 210 66 269 3.12e-35 134
Msa0617580 AT2G41210.1 35.754 179 115 0 67 245 71 249 8.45e-28 113
Msa0617580 AT2G41210.1 36.364 165 103 1 104 268 64 226 2.41e-26 108
Msa0617580 AT1G21920.2 40.659 182 106 1 14 193 166 347 7.28e-35 129
Msa0617580 AT1G21920.2 36.413 184 117 0 53 236 161 344 2.55e-31 120
Msa0617580 AT1G21920.2 38.650 163 100 0 106 268 168 330 3.39e-28 111
Msa0617580 AT1G21920.2 31.658 199 136 0 84 282 169 367 5.36e-25 103
Msa0617580 AT1G77660.1 40.206 194 114 1 2 193 158 351 1.25e-34 130
Msa0617580 AT1G77660.1 37.222 180 113 0 57 236 169 348 2.14e-29 115
Msa0617580 AT1G77660.1 38.650 163 100 0 106 268 172 334 5.40e-26 106
Msa0617580 AT1G21920.1 40.659 182 106 1 14 193 166 347 1.41e-34 129
Msa0617580 AT1G21920.1 36.413 184 117 0 53 236 161 344 7.17e-31 119
Msa0617580 AT1G21920.1 38.650 163 100 0 106 268 168 330 1.01e-27 111
Msa0617580 AT1G21920.1 31.500 200 137 0 84 283 169 368 1.59e-24 102
Msa0617580 AT1G77740.2 39.429 175 106 0 16 190 73 247 1.51e-34 132
Msa0617580 AT1G77740.2 37.647 170 106 0 67 236 78 247 4.68e-28 114
Msa0617580 AT1G77740.2 36.478 159 101 0 112 270 77 235 2.62e-27 111
Msa0617580 AT1G77740.2 33.333 171 114 0 89 259 77 247 9.16e-23 98.6
Msa0617580 AT1G77740.2 36.496 137 87 0 134 270 76 212 1.22e-21 95.1
Msa0617580 AT1G77740.1 39.429 175 106 0 16 190 73 247 1.51e-34 132
Msa0617580 AT1G77740.1 37.647 170 106 0 67 236 78 247 4.68e-28 114
Msa0617580 AT1G77740.1 36.478 159 101 0 112 270 77 235 2.62e-27 111
Msa0617580 AT1G77740.1 33.333 171 114 0 89 259 77 247 9.16e-23 98.6
Msa0617580 AT1G77740.1 36.496 137 87 0 134 270 76 212 1.22e-21 95.1
Msa0617580 AT2G26420.1 41.463 164 96 0 14 177 47 210 5.31e-32 125
Msa0617580 AT2G26420.1 37.975 158 98 0 113 270 54 211 2.42e-26 108
Msa0617580 AT2G26420.1 36.957 184 114 1 67 248 54 237 2.91e-24 102
Msa0617580 AT2G26420.1 36.875 160 101 0 90 249 54 213 1.63e-22 97.8
Msa0617580 AT2G26420.2 41.463 164 96 0 14 177 47 210 6.40e-32 125
Msa0617580 AT2G26420.2 37.975 158 98 0 113 270 54 211 3.16e-26 108
Msa0617580 AT2G26420.2 36.875 160 101 0 90 249 54 213 2.06e-22 97.4
Msa0617580 AT2G26420.3 41.463 164 96 0 14 177 47 210 6.40e-32 125
Msa0617580 AT2G26420.3 37.975 158 98 0 113 270 54 211 3.16e-26 108
Msa0617580 AT2G26420.3 36.875 160 101 0 90 249 54 213 2.06e-22 97.4
Msa0617580 AT4G17080.1 40.000 175 105 0 19 193 256 430 7.37e-32 124
Msa0617580 AT4G17080.1 37.714 175 109 0 42 216 256 430 3.40e-29 116
Msa0617580 AT4G17080.1 32.487 197 127 1 62 258 253 443 2.64e-28 114
Msa0617580 AT4G17080.1 38.012 171 106 0 99 269 244 414 2.91e-28 113
Msa0617580 AT2G35170.1 39.181 171 104 0 23 193 229 399 2.34e-29 116
Msa0617580 AT2G35170.1 32.843 204 134 1 62 262 222 425 1.46e-27 111
Msa0617580 AT2G35170.1 38.824 170 104 0 47 216 230 399 3.80e-27 110
Msa0617580 AT1G75010.1 34.921 126 82 0 68 193 604 729 1.71e-11 65.1

Find 109 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACGTCTACACTGGAAAT+TGG 0.199973 4_2:+68182296 Msa0617580:CDS
GAAACGTCTACACTGGAAAT+TGG 0.199973 4_2:+68182572 Msa0617580:CDS
TTTAGAGAAGAGTGGTTAAA+AGG 0.215927 4_2:+68181435 Msa0617580:five_prime_UTR
TACACTGGAAATTGGGAAAA+AGG 0.217123 4_2:+68182580 Msa0617580:CDS
GGGATGTCTACGCTGGAAAT+TGG 0.240613 4_2:+68182434 Msa0617580:CDS
ATTGATGATGATGATACTTT+AGG 0.276478 4_2:-68181402 None:intergenic
TACACTGGAAATTGGGAAAA+AGG 0.296129 4_2:+68182304 Msa0617580:CDS
GAGATGTCTACACTGGAAAT+TGG 0.297839 4_2:+68182710 Msa0617580:CDS
TGAGATTCCTTCTAGCTATC+TGG 0.302934 4_2:+68184111 Msa0617580:three_prime_UTR
TGACCAACAACCATCGAAAA+TGG 0.303459 4_2:-68182230 None:intergenic
TACGCTGGAAATTGGGAAAA+AGG 0.309774 4_2:+68182442 Msa0617580:CDS
ACTGATGAACATGATGATTA+GGG 0.312807 4_2:+68183770 Msa0617580:three_prime_UTR
AATTAAGCTTCAGATGATAA+TGG 0.335808 4_2:-68182875 None:intergenic
TACTGATGAACATGATGATT+AGG 0.344048 4_2:+68183769 Msa0617580:three_prime_UTR
ATGGAAAAGGGATTATGAAT+TGG 0.347632 4_2:+68182473 Msa0617580:CDS
AATGGACTTTCGCATGGATA+TGG 0.353378 4_2:+68182529 Msa0617580:CDS
TACGAGGGCGATTGGGTTGA+TGG 0.368273 4_2:+68182787 Msa0617580:CDS
AATGGACATAAACATGGATA+TGG 0.369212 4_2:+68182391 Msa0617580:CDS
TTCAATGGTTATTGGTCAAA+TGG 0.370575 4_2:+68182373 Msa0617580:CDS
AGGGAAAGGGATTATGAATT+GGG 0.375715 4_2:+68182198 Msa0617580:CDS
GAGTTTATAGATTTGCAAAT+GGG 0.384860 4_2:+68182413 Msa0617580:CDS
CAGGGAAAGGGATTATGAAT+TGG 0.387625 4_2:+68182197 Msa0617580:CDS
TTCAAGGGTGAACTTCTTCA+TGG 0.393069 4_2:+68182109 Msa0617580:CDS
TTCGATGGTTGTTGGTCAAA+TGG 0.393393 4_2:+68182235 Msa0617580:CDS
AATGGACTTTCACATGGATA+TGG 0.393948 4_2:+68182253 Msa0617580:CDS
TGGAAAAGGGATTATGAATT+GGG 0.398832 4_2:+68182474 Msa0617580:CDS
ATTAAGCTTCAGATGATAAT+GGG 0.406796 4_2:-68182874 None:intergenic
TTCGATGGTTATTGGTCAAA+TGG 0.407614 4_2:+68182649 Msa0617580:CDS
TACGAGGGTGACTGGGTTGA+TGG 0.408545 4_2:+68182166 Msa0617580:CDS
AATAATAAAATGGATGGAAG+AGG 0.408648 4_2:+68182736 Msa0617580:CDS
GAACAATATACGAGGGTGAC+TGG 0.412789 4_2:+68182158 Msa0617580:CDS
ATGGAAAAGGGATTATGAAA+TGG 0.419433 4_2:+68182335 Msa0617580:CDS
TAGAAGACTTGTCAAAATAT+AGG 0.420171 4_2:-68184059 None:intergenic
TTCGATGGTTGCTGGTCAAA+TGG 0.420223 4_2:+68182511 Msa0617580:CDS
GGGATTATGAATTGGGCTAA+TGG 0.426829 4_2:+68182481 Msa0617580:CDS
AAGGGGAAAGGGATGGAAAA+GGG 0.430911 4_2:+68182599 Msa0617580:CDS
TGGGTTGATGGACAAATGAT+AGG 0.434531 4_2:+68182799 Msa0617580:CDS
AGGGGAGGAGCGGTTGCTAT+AGG 0.434841 4_2:+68183789 Msa0617580:three_prime_UTR
GGAGTTTATAGATTTGCAAA+TGG 0.437498 4_2:+68182412 Msa0617580:CDS
AAAGGGGAAAGGGATGGAAA+AGG 0.442937 4_2:+68182598 Msa0617580:CDS
ATGGAAAAGGGATTATGAAA+TGG 0.443399 4_2:+68182611 Msa0617580:CDS
AAAGGAGAAAAGGATGGAAA+AGG 0.446263 4_2:+68182460 Msa0617580:CDS
AAACGTCTACACTGGAAATT+GGG 0.451480 4_2:+68182297 Msa0617580:CDS
AAACGTCTACACTGGAAATT+GGG 0.451480 4_2:+68182573 Msa0617580:CDS
AAGGAGAAAAGGATGGAAAA+GGG 0.451607 4_2:+68182461 Msa0617580:CDS
GGGATTATGAATTGGTCAAA+TGG 0.455729 4_2:+68182757 Msa0617580:CDS
GAACAATGTACGAGGGCGAT+TGG 0.457462 4_2:+68182779 Msa0617580:CDS
AAGGTGAAAGGCATGGAAAA+GGG 0.462403 4_2:+68182323 Msa0617580:CDS
GGATGTCTACGCTGGAAATT+GGG 0.465315 4_2:+68182435 Msa0617580:CDS
CATCATCATCAATATATAGA+AGG 0.468056 4_2:+68181412 Msa0617580:five_prime_UTR
ATGGAAGAGGGATTATGAAT+TGG 0.469752 4_2:+68182749 Msa0617580:CDS
GGGATTATGAATTGGGGTAA+TGG 0.470324 4_2:+68182205 Msa0617580:CDS
GACAATGCATAATATATGTA+AGG 0.470325 4_2:-68181319 None:intergenic
AACAATGTACGAGGGCGATT+GGG 0.470740 4_2:+68182780 Msa0617580:CDS
TGTCTACATTGGTAAATTCA+AGG 0.474127 4_2:+68182093 Msa0617580:CDS
AAAGGTGAAAGGCATGGAAA+AGG 0.474168 4_2:+68182322 Msa0617580:CDS
CAAACAACCAGATAGCTAGA+AGG 0.478740 4_2:-68184118 None:intergenic
GGAGTTTATAGATTTGCAAA+TGG 0.480472 4_2:+68182688 Msa0617580:CDS
TGGAAAAGGGATTATGAAAT+GGG 0.487859 4_2:+68182612 Msa0617580:CDS
TGGAAAAGGGATTATGAAAT+GGG 0.493424 4_2:+68182336 Msa0617580:CDS
GGAAAGTACACATGGACAAA+TGG 0.494048 4_2:+68182136 Msa0617580:CDS
CTATTTGTAGTTAAGTTCGC+GGG 0.494915 4_2:+68181341 Msa0617580:five_prime_UTR
GATGGAAAAGTGACAGGGAA+AGG 0.496612 4_2:+68182184 Msa0617580:CDS
GGAGTTTATAGATCTGCAAA+TGG 0.513797 4_2:+68182274 Msa0617580:CDS
GGAGTTTATAGATCTGCAAA+TGG 0.513797 4_2:+68182550 Msa0617580:CDS
TCAAATGGGGATGTCTACAT+TGG 0.518877 4_2:+68182082 Msa0617580:CDS
ATGCAAGTCATGGAGGATGA+TGG 0.528096 4_2:+68181906 Msa0617580:CDS
ATGGAAAAGTGACAGGGAAA+GGG 0.534561 4_2:+68182185 Msa0617580:CDS
GAGGTCATGACTACAACAAA+GGG 0.536136 4_2:+68183714 Msa0617580:intron
TGGGTTGATGGAAAAGTGAC+AGG 0.540161 4_2:+68182178 Msa0617580:CDS
ATAATAAAATGGATGGAAGA+GGG 0.546218 4_2:+68182737 Msa0617580:CDS
GATGGACAAATGATAGGGAA+TGG 0.550634 4_2:+68182805 Msa0617580:CDS
AGCGGTTGCTATAGGAGTCT+AGG 0.556943 4_2:+68183797 Msa0617580:three_prime_UTR
ATAGAAGGTTTAGAGAAGAG+TGG 0.560311 4_2:+68181427 Msa0617580:five_prime_UTR
AACAATATACGAGGGTGACT+GGG 0.562591 4_2:+68182159 Msa0617580:CDS
GGGTTGATGGACAAATGATA+GGG 0.565463 4_2:+68182800 Msa0617580:CDS
TCTATTTGTAGTTAAGTTCG+CGG 0.567179 4_2:+68181340 Msa0617580:five_prime_UTR
AGTTTATAGATTTGCAAATG+GGG 0.568661 4_2:+68182414 Msa0617580:CDS
GTCTACATTGGTAAATTCAA+GGG 0.570653 4_2:+68182094 Msa0617580:CDS
AATGGACAGAAACATGGCTA+TGG 0.574469 4_2:+68182667 Msa0617580:CDS
GGTGAACTTCTTCATGGCAT+CGG 0.576407 4_2:+68182115 Msa0617580:CDS
TGGTCAAATGGACTTTCACA+TGG 0.576790 4_2:+68182247 Msa0617580:CDS
GGGAATGGATTGATGATACC+AGG 0.577591 4_2:+68182820 Msa0617580:CDS
GAGTGAAAGAATGCAAGTCA+TGG 0.582412 4_2:+68181896 Msa0617580:CDS
GCAAATGGAAACGTCTACAC+TGG 0.588126 4_2:+68182289 Msa0617580:CDS
GCAAATGGAAACGTCTACAC+TGG 0.588126 4_2:+68182565 Msa0617580:CDS
AGACTTGTCAAAATATAGGA+AGG 0.593311 4_2:-68184055 None:intergenic
GCAAATGGGGATGTCTACGC+TGG 0.596613 4_2:+68182427 Msa0617580:CDS
TGGTCAAATGGACAGAAACA+TGG 0.596729 4_2:+68182661 Msa0617580:CDS
TGGTCAAATGGACTTTCGCA+TGG 0.604154 4_2:+68182523 Msa0617580:CDS
TGGTCAAATGGACATAAACA+TGG 0.607218 4_2:+68182385 Msa0617580:CDS
AGAGGTCATGACTACAACAA+AGG 0.607283 4_2:+68183713 Msa0617580:intron
GCAAATGGAGATGTCTACAC+TGG 0.608648 4_2:+68182703 Msa0617580:CDS
GGGATTATGAAATGGGCTAA+CGG 0.622522 4_2:+68182343 Msa0617580:CDS
GGGATTATGAAATGGGCTAA+CGG 0.622522 4_2:+68182619 Msa0617580:CDS
CATGATGATTAGGGGAGGAG+CGG 0.625040 4_2:+68183779 Msa0617580:three_prime_UTR
GGGAAAGGGATTATGAATTG+GGG 0.649116 4_2:+68182199 Msa0617580:CDS
CTGATGAACATGATGATTAG+GGG 0.661023 4_2:+68183771 Msa0617580:three_prime_UTR
AAGTCATGGAGGATGATGGA+AGG 0.670085 4_2:+68181910 Msa0617580:CDS
ATGAACATGATGATTAGGGG+AGG 0.677924 4_2:+68183774 Msa0617580:three_prime_UTR
GTCAAATGGAACAATGTACG+AGG 0.679412 4_2:+68182771 Msa0617580:CDS
ATGGCATCGGAAAGTACACA+TGG 0.681327 4_2:+68182128 Msa0617580:CDS
GTCTCAACTAATACTCAACA+AGG 0.683248 4_2:-68184020 None:intergenic
TATTTGTAGTTAAGTTCGCG+GGG 0.700724 4_2:+68181342 Msa0617580:five_prime_UTR
GACAAATGGAACAATATACG+AGG 0.707016 4_2:+68182150 Msa0617580:CDS
TCAAATGGAACAATGTACGA+GGG 0.718322 4_2:+68182772 Msa0617580:CDS
ACAAATGGAACAATATACGA+GGG 0.718645 4_2:+68182151 Msa0617580:CDS
GGGTTGATGGAAAAGTGACA+GGG 0.720292 4_2:+68182179 Msa0617580:CDS
TGAAAGAATGCAAGTCATGG+AGG 0.727592 4_2:+68181899 Msa0617580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGGAAAAATAATAAAA+TGG + chr4_2:68182726-68182745 Msa0617580:CDS 10.0%
!! GAAATCATAATCATAATAAA+TGG - chr4_2:68182022-68182041 None:intergenic 15.0%
!! TTTGATCTTTAATAGTATTA+TGG + chr4_2:68182922-68182941 Msa0617580:intron 15.0%
!!! ATGATTATTAGTTTAAACTT+TGG + chr4_2:68183435-68183454 Msa0617580:intron 15.0%
!!! TATTATCTAGTTTTAGTTTT+TGG + chr4_2:68183891-68183910 Msa0617580:three_prime_UTR 15.0%
!! TAAGAAATTATAGAGTAAAG+TGG - chr4_2:68181496-68181515 None:intergenic 20.0%
!! TAATGTATTATCTTGATTCT+TGG + chr4_2:68181587-68181606 Msa0617580:intron 20.0%
!! AATGTATTATCTTGATTCTT+GGG + chr4_2:68181588-68181607 Msa0617580:intron 20.0%
!! AATTAAACAAACTCAAAACT+TGG - chr4_2:68181831-68181850 None:intergenic 20.0%
!! TGGAAAAATAATAAAATGGA+TGG + chr4_2:68182730-68182749 Msa0617580:CDS 20.0%
!! TTAATAGTATTATGGAAAAC+TGG + chr4_2:68182930-68182949 Msa0617580:intron 20.0%
!! ACTTAATTATTTGACAATCA+TGG + chr4_2:68183006-68183025 Msa0617580:intron 20.0%
!! ATTATAAGCTTAATCCAAAT+AGG + chr4_2:68183353-68183372 Msa0617580:intron 20.0%
!!! ATTATTAGTTTAAACTTTGG+TGG + chr4_2:68183438-68183457 Msa0617580:intron 20.0%
!!! ATTGATGATGATGATACTTT+AGG - chr4_2:68181405-68181424 None:intergenic 25.0%
! CATCATCATCAATATATAGA+AGG + chr4_2:68181412-68181431 Msa0617580:five_prime_UTR 25.0%
! AGTAGAAAAAAAGAGATCAT+CGG + chr4_2:68181459-68181478 Msa0617580:five_prime_UTR 25.0%
!! ATGATTTTGTGTTTTCACAT+CGG + chr4_2:68181519-68181538 Msa0617580:intron 25.0%
! AAAGCTTAATCCAAGAAAAA+AGG + chr4_2:68181547-68181566 Msa0617580:intron 25.0%
! AAGCTTAATCCAAGAAAAAA+GGG + chr4_2:68181548-68181567 Msa0617580:intron 25.0%
! ACAAAAAATTGAGATGAGAA+TGG - chr4_2:68181753-68181772 None:intergenic 25.0%
!! AAAGAGAAGTTCTTTTCAAA+TGG + chr4_2:68182067-68182086 Msa0617580:CDS 25.0%
!! AAGAGAAGTTCTTTTCAAAT+GGG + chr4_2:68182068-68182087 Msa0617580:CDS 25.0%
! GAGTTTATAGATTTGCAAAT+GGG + chr4_2:68182413-68182432 Msa0617580:CDS 25.0%
! AGTTTATAGATTTGCAAATG+GGG + chr4_2:68182414-68182433 Msa0617580:CDS 25.0%
! AATAATAAAATGGATGGAAG+AGG + chr4_2:68182736-68182755 Msa0617580:CDS 25.0%
! ATAATAAAATGGATGGAAGA+GGG + chr4_2:68182737-68182756 Msa0617580:CDS 25.0%
! ATTAAGCTTCAGATGATAAT+GGG - chr4_2:68182877-68182896 None:intergenic 25.0%
! AATTAAGCTTCAGATGATAA+TGG - chr4_2:68182878-68182897 None:intergenic 25.0%
! GAAAACTGGTATAATATTCA+TGG + chr4_2:68182944-68182963 Msa0617580:intron 25.0%
! ATTAAGTATAGAACAGTTGA+TGG - chr4_2:68182993-68183012 None:intergenic 25.0%
!! GTCAAATAGTTTTCTATACA+GGG - chr4_2:68183032-68183051 None:intergenic 25.0%
!! AGTCAAATAGTTTTCTATAC+AGG - chr4_2:68183033-68183052 None:intergenic 25.0%
! TATTTGACTAATAGATCAGA+TGG + chr4_2:68183044-68183063 Msa0617580:intron 25.0%
! ACTAATAAACTAAAAGCTCA+TGG - chr4_2:68183113-68183132 None:intergenic 25.0%
! TTCTTATGTTAAGTAGACTT+GGG - chr4_2:68183163-68183182 None:intergenic 25.0%
! TTTCTTATGTTAAGTAGACT+TGG - chr4_2:68183164-68183183 None:intergenic 25.0%
! TATGTGTTTAGTGTTGTAAA+TGG + chr4_2:68183201-68183220 Msa0617580:intron 25.0%
! TAGTGTTGTAAATGGAAAAT+TGG + chr4_2:68183209-68183228 Msa0617580:intron 25.0%
!!! CTGACAGAAATTTTTTAGTA+TGG + chr4_2:68183237-68183256 Msa0617580:intron 25.0%
! TTATAGTAACTGTGTGTTTA+TGG + chr4_2:68183649-68183668 Msa0617580:intron 25.0%
!! GTTTAAATTTTCTTATGCAG+AGG + chr4_2:68183695-68183714 Msa0617580:intron 25.0%
! TAGAAGACTTGTCAAAATAT+AGG - chr4_2:68184062-68184081 None:intergenic 25.0%
TCTATTTGTAGTTAAGTTCG+CGG + chr4_2:68181340-68181359 Msa0617580:five_prime_UTR 30.0%
TTTAGAGAAGAGTGGTTAAA+AGG + chr4_2:68181435-68181454 Msa0617580:five_prime_UTR 30.0%
AAAAAGAGATCATCGGAAAA+AGG + chr4_2:68181466-68181485 Msa0617580:five_prime_UTR 30.0%
!!! TACACTAAACCCTTTTTTCT+TGG - chr4_2:68181560-68181579 None:intergenic 30.0%
GAACGTTAACAGAAATACTA+GGG - chr4_2:68181640-68181659 None:intergenic 30.0%
AGAACGTTAACAGAAATACT+AGG - chr4_2:68181641-68181660 None:intergenic 30.0%
CTAACAATGATTCACATTCT+GGG - chr4_2:68181671-68181690 None:intergenic 30.0%
ATCAACAAAACCCTGAATTA+GGG + chr4_2:68181705-68181724 Msa0617580:intron 30.0%
CTTAAATCAACCCTAATTCA+GGG - chr4_2:68181718-68181737 None:intergenic 30.0%
! AGAGAAGTTCTTTTCAAATG+GGG + chr4_2:68182069-68182088 Msa0617580:CDS 30.0%
TGTCTACATTGGTAAATTCA+AGG + chr4_2:68182093-68182112 Msa0617580:CDS 30.0%
GTCTACATTGGTAAATTCAA+GGG + chr4_2:68182094-68182113 Msa0617580:CDS 30.0%
ACAAATGGAACAATATACGA+GGG + chr4_2:68182151-68182170 Msa0617580:CDS 30.0%
ATGGAAAAGGGATTATGAAA+TGG + chr4_2:68182335-68182354 Msa0617580:CDS 30.0%
TGGAAAAGGGATTATGAAAT+GGG + chr4_2:68182336-68182355 Msa0617580:CDS 30.0%
! GTGATGTTTTCAATGGTTAT+TGG + chr4_2:68182365-68182384 Msa0617580:CDS 30.0%
TTCAATGGTTATTGGTCAAA+TGG + chr4_2:68182373-68182392 Msa0617580:CDS 30.0%
AATGGACATAAACATGGATA+TGG + chr4_2:68182391-68182410 Msa0617580:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG + chr4_2:68182412-68182431 Msa0617580:CDS 30.0%
AAATTGGGAAAAAGGAGAAA+AGG + chr4_2:68182450-68182469 Msa0617580:CDS 30.0%
ATGGAAAAGGGATTATGAAT+TGG + chr4_2:68182473-68182492 Msa0617580:CDS 30.0%
TGGAAAAGGGATTATGAATT+GGG + chr4_2:68182474-68182493 Msa0617580:CDS 30.0%
ATGGAAAAGGGATTATGAAA+TGG + chr4_2:68182335-68182354 Msa0617580:CDS 30.0%
TGGAAAAGGGATTATGAAAT+GGG + chr4_2:68182336-68182355 Msa0617580:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG + chr4_2:68182412-68182431 Msa0617580:CDS 30.0%
AAAAATGTACATAGAAAGCC+TGG - chr4_2:68182841-68182860 None:intergenic 30.0%
GCTTCAAGTCTTTATGAAAA+TGG + chr4_2:68183066-68183085 Msa0617580:intron 30.0%
TATGGATAAAGAATGTGAAC+AGG + chr4_2:68183255-68183274 Msa0617580:intron 30.0%
CACAGAAAATATAGATGACA+GGG + chr4_2:68183295-68183314 Msa0617580:intron 30.0%
AAAACTGAAACCCTTTAGAT+AGG - chr4_2:68183323-68183342 None:intergenic 30.0%
ATAAGCTTAATCCAAATAGG+AGG + chr4_2:68183356-68183375 Msa0617580:intron 30.0%
TGATAAGTATCTAAGCACTT+GGG - chr4_2:68183520-68183539 None:intergenic 30.0%
TACTGATGAACATGATGATT+AGG + chr4_2:68183769-68183788 Msa0617580:three_prime_UTR 30.0%
ACTGATGAACATGATGATTA+GGG + chr4_2:68183770-68183789 Msa0617580:three_prime_UTR 30.0%
!!! GGTAAGATGTTTTGAGAATT+AGG - chr4_2:68184002-68184021 None:intergenic 30.0%
AGACTTGTCAAAATATAGGA+AGG - chr4_2:68184058-68184077 None:intergenic 30.0%
CTATTTGTAGTTAAGTTCGC+GGG + chr4_2:68181341-68181360 Msa0617580:five_prime_UTR 35.0%
TATTTGTAGTTAAGTTCGCG+GGG + chr4_2:68181342-68181361 Msa0617580:five_prime_UTR 35.0%
ATAGAAGGTTTAGAGAAGAG+TGG + chr4_2:68181427-68181446 Msa0617580:five_prime_UTR 35.0%
! ATTTTGTGTTTTCACATCGG+AGG + chr4_2:68181522-68181541 Msa0617580:intron 35.0%
GCTAACAATGATTCACATTC+TGG - chr4_2:68181672-68181691 None:intergenic 35.0%
CATCAACAAAACCCTGAATT+AGG + chr4_2:68181704-68181723 Msa0617580:intron 35.0%
CCTTAAATCAACCCTAATTC+AGG - chr4_2:68181719-68181738 None:intergenic 35.0%
! CCTGAATTAGGGTTGATTTA+AGG + chr4_2:68181716-68181735 Msa0617580:intron 35.0%
ACAAACTCAAAACTTGGAAG+AGG - chr4_2:68181825-68181844 None:intergenic 35.0%
TCAAATTCAGTTCAGAAAGC+TGG - chr4_2:68181859-68181878 None:intergenic 35.0%
TGAATTAGATAGAGTAGCTG+TGG - chr4_2:68181951-68181970 None:intergenic 35.0%
GACAAATGGAACAATATACG+AGG + chr4_2:68182150-68182169 Msa0617580:CDS 35.0%
AGGGAAAGGGATTATGAATT+GGG + chr4_2:68182198-68182217 Msa0617580:CDS 35.0%
! AATGGACTTTCACATGGATA+TGG + chr4_2:68182253-68182272 Msa0617580:CDS 35.0%
GGAGTTTATAGATCTGCAAA+TGG + chr4_2:68182274-68182293 Msa0617580:CDS 35.0%
AAACGTCTACACTGGAAATT+GGG + chr4_2:68182297-68182316 Msa0617580:CDS 35.0%
TACACTGGAAATTGGGAAAA+AGG + chr4_2:68182304-68182323 Msa0617580:CDS 35.0%
GAAATTGGGAAAAAGGTGAA+AGG + chr4_2:68182311-68182330 Msa0617580:CDS 35.0%
TGGTCAAATGGACATAAACA+TGG + chr4_2:68182385-68182404 Msa0617580:CDS 35.0%
AAAGGAGAAAAGGATGGAAA+AGG + chr4_2:68182460-68182479 Msa0617580:CDS 35.0%
AAGGAGAAAAGGATGGAAAA+GGG + chr4_2:68182461-68182480 Msa0617580:CDS 35.0%
GGAGTTTATAGATCTGCAAA+TGG + chr4_2:68182274-68182293 Msa0617580:CDS 35.0%
AAACGTCTACACTGGAAATT+GGG + chr4_2:68182297-68182316 Msa0617580:CDS 35.0%
TACACTGGAAATTGGGAAAA+AGG + chr4_2:68182304-68182323 Msa0617580:CDS 35.0%
ACACTGGAAATTGGGAAAAA+GGG + chr4_2:68182305-68182324 Msa0617580:CDS 35.0%
AAATTGGGAAAAAGGGGAAA+GGG + chr4_2:68182588-68182607 Msa0617580:CDS 35.0%
! GTGATGTTTTCGATGGTTAT+TGG + chr4_2:68182641-68182660 Msa0617580:CDS 35.0%
TTCGATGGTTATTGGTCAAA+TGG + chr4_2:68182649-68182668 Msa0617580:CDS 35.0%
ATGGAAGAGGGATTATGAAT+TGG + chr4_2:68182749-68182768 Msa0617580:CDS 35.0%
GGGATTATGAATTGGTCAAA+TGG + chr4_2:68182757-68182776 Msa0617580:CDS 35.0%
TCAAATGGAACAATGTACGA+GGG + chr4_2:68182772-68182791 Msa0617580:CDS 35.0%
! CCTGTCATCTATATTTTCTG+TGG - chr4_2:68183297-68183316 None:intergenic 35.0%
CCACAGAAAATATAGATGAC+AGG + chr4_2:68183294-68183313 Msa0617580:intron 35.0%
AAACTAAACAGCCTCCTATT+TGG - chr4_2:68183370-68183389 None:intergenic 35.0%
!!! ACTTTGGTGGACTATTTTAG+TGG + chr4_2:68183451-68183470 Msa0617580:intron 35.0%
GCTATCAAAGGTGAATAATG+AGG - chr4_2:68183477-68183496 None:intergenic 35.0%
!! CTTTGATAGCTAGCTTTCAA+GGG + chr4_2:68183487-68183506 Msa0617580:intron 35.0%
GATAAGTATCTAAGCACTTG+GGG - chr4_2:68183519-68183538 None:intergenic 35.0%
CTGATAAGTATCTAAGCACT+TGG - chr4_2:68183521-68183540 None:intergenic 35.0%
AGATACTTATCAGAACGATG+TGG + chr4_2:68183528-68183547 Msa0617580:intron 35.0%
CTGATGAACATGATGATTAG+GGG + chr4_2:68183771-68183790 Msa0617580:three_prime_UTR 35.0%
GTCTCAACTAATACTCAACA+AGG - chr4_2:68184023-68184042 None:intergenic 35.0%
GAGTGAAAGAATGCAAGTCA+TGG + chr4_2:68181896-68181915 Msa0617580:CDS 40.0%
TGAAAGAATGCAAGTCATGG+AGG + chr4_2:68181899-68181918 Msa0617580:CDS 40.0%
TCAAATGGGGATGTCTACAT+TGG + chr4_2:68182082-68182101 Msa0617580:CDS 40.0%
TTCAAGGGTGAACTTCTTCA+TGG + chr4_2:68182109-68182128 Msa0617580:CDS 40.0%
! GGAAAGTACACATGGACAAA+TGG + chr4_2:68182136-68182155 Msa0617580:CDS 40.0%
AACAATATACGAGGGTGACT+GGG + chr4_2:68182159-68182178 Msa0617580:CDS 40.0%
ATGGAAAAGTGACAGGGAAA+GGG + chr4_2:68182185-68182204 Msa0617580:CDS 40.0%
CAGGGAAAGGGATTATGAAT+TGG + chr4_2:68182197-68182216 Msa0617580:CDS 40.0%
GGGAAAGGGATTATGAATTG+GGG + chr4_2:68182199-68182218 Msa0617580:CDS 40.0%
GGGATTATGAATTGGGGTAA+TGG + chr4_2:68182205-68182224 Msa0617580:CDS 40.0%
TGACCAACAACCATCGAAAA+TGG - chr4_2:68182233-68182252 None:intergenic 40.0%
TTCGATGGTTGTTGGTCAAA+TGG + chr4_2:68182235-68182254 Msa0617580:CDS 40.0%
! TGGTCAAATGGACTTTCACA+TGG + chr4_2:68182247-68182266 Msa0617580:CDS 40.0%
GAAACGTCTACACTGGAAAT+TGG + chr4_2:68182296-68182315 Msa0617580:CDS 40.0%
! AAAGGTGAAAGGCATGGAAA+AGG + chr4_2:68182322-68182341 Msa0617580:CDS 40.0%
! AAGGTGAAAGGCATGGAAAA+GGG + chr4_2:68182323-68182342 Msa0617580:CDS 40.0%
!! GGGATTATGAAATGGGCTAA+CGG + chr4_2:68182343-68182362 Msa0617580:CDS 40.0%
! GCTAACGGTGATGTTTTCAA+TGG + chr4_2:68182358-68182377 Msa0617580:CDS 40.0%
TACGCTGGAAATTGGGAAAA+AGG + chr4_2:68182442-68182461 Msa0617580:CDS 40.0%
TGGGAAAAAGGAGAAAAGGA+TGG + chr4_2:68182454-68182473 Msa0617580:CDS 40.0%
GGGATTATGAATTGGGCTAA+TGG + chr4_2:68182481-68182500 Msa0617580:CDS 40.0%
!!! GCTAATGGTGCTATTTTCGA+TGG + chr4_2:68182496-68182515 Msa0617580:CDS 40.0%
! AATGGACTTTCGCATGGATA+TGG + chr4_2:68182529-68182548 Msa0617580:CDS 40.0%
GAAACGTCTACACTGGAAAT+TGG + chr4_2:68182296-68182315 Msa0617580:CDS 40.0%
CACTGGAAATTGGGAAAAAG+GGG + chr4_2:68182306-68182325 Msa0617580:CDS 40.0%
GAAATTGGGAAAAAGGGGAA+AGG + chr4_2:68182587-68182606 Msa0617580:CDS 40.0%
!! GGGATTATGAAATGGGCTAA+CGG + chr4_2:68182343-68182362 Msa0617580:CDS 40.0%
TGGTCAAATGGACAGAAACA+TGG + chr4_2:68182661-68182680 Msa0617580:CDS 40.0%
AATGGACAGAAACATGGCTA+TGG + chr4_2:68182667-68182686 Msa0617580:CDS 40.0%
GAGATGTCTACACTGGAAAT+TGG + chr4_2:68182710-68182729 Msa0617580:CDS 40.0%
GTCAAATGGAACAATGTACG+AGG + chr4_2:68182771-68182790 Msa0617580:CDS 40.0%
!! TGGGTTGATGGACAAATGAT+AGG + chr4_2:68182799-68182818 Msa0617580:CDS 40.0%
!! GGGTTGATGGACAAATGATA+GGG + chr4_2:68182800-68182819 Msa0617580:CDS 40.0%
GATGGACAAATGATAGGGAA+TGG + chr4_2:68182805-68182824 Msa0617580:CDS 40.0%
ATGACAGGGTTCCTATCTAA+AGG + chr4_2:68183309-68183328 Msa0617580:intron 40.0%
TGACAGGGTTCCTATCTAAA+GGG + chr4_2:68183310-68183329 Msa0617580:intron 40.0%
CCTTGAAAGCTAGCTATCAA+AGG - chr4_2:68183489-68183508 None:intergenic 40.0%
!! CCTTTGATAGCTAGCTTTCA+AGG + chr4_2:68183486-68183505 Msa0617580:intron 40.0%
GAACGATGTGGTGTGATATA+CGG + chr4_2:68183540-68183559 Msa0617580:intron 40.0%
AGAGGTCATGACTACAACAA+AGG + chr4_2:68183713-68183732 Msa0617580:intron 40.0%
GAGGTCATGACTACAACAAA+GGG + chr4_2:68183714-68183733 Msa0617580:intron 40.0%
ATGAACATGATGATTAGGGG+AGG + chr4_2:68183774-68183793 Msa0617580:three_prime_UTR 40.0%
! TGAGATTCCTTCTAGCTATC+TGG + chr4_2:68184111-68184130 Msa0617580:three_prime_UTR 40.0%
CAAACAACCAGATAGCTAGA+AGG - chr4_2:68184121-68184140 None:intergenic 40.0%
ATGCAAGTCATGGAGGATGA+TGG + chr4_2:68181906-68181925 Msa0617580:CDS 45.0%
!! AAGTCATGGAGGATGATGGA+AGG + chr4_2:68181910-68181929 Msa0617580:CDS 45.0%
GGTGAACTTCTTCATGGCAT+CGG + chr4_2:68182115-68182134 Msa0617580:CDS 45.0%
! ATGGCATCGGAAAGTACACA+TGG + chr4_2:68182128-68182147 Msa0617580:CDS 45.0%
GAACAATATACGAGGGTGAC+TGG + chr4_2:68182158-68182177 Msa0617580:CDS 45.0%
!! TGGGTTGATGGAAAAGTGAC+AGG + chr4_2:68182178-68182197 Msa0617580:CDS 45.0%
!! GGGTTGATGGAAAAGTGACA+GGG + chr4_2:68182179-68182198 Msa0617580:CDS 45.0%
GATGGAAAAGTGACAGGGAA+AGG + chr4_2:68182184-68182203 Msa0617580:CDS 45.0%
!!! GGTAATGGTGCCATTTTCGA+TGG + chr4_2:68182220-68182239 Msa0617580:CDS 45.0%
!!! GTGCCATTTTCGATGGTTGT+TGG + chr4_2:68182227-68182246 Msa0617580:CDS 45.0%
GCAAATGGAAACGTCTACAC+TGG + chr4_2:68182289-68182308 Msa0617580:CDS 45.0%
TGGGAAAAAGGTGAAAGGCA+TGG + chr4_2:68182316-68182335 Msa0617580:CDS 45.0%
GGATGTCTACGCTGGAAATT+GGG + chr4_2:68182435-68182454 Msa0617580:CDS 45.0%
!!! GTGCTATTTTCGATGGTTGC+TGG + chr4_2:68182503-68182522 Msa0617580:CDS 45.0%
TTCGATGGTTGCTGGTCAAA+TGG + chr4_2:68182511-68182530 Msa0617580:CDS 45.0%
! TGGTCAAATGGACTTTCGCA+TGG + chr4_2:68182523-68182542 Msa0617580:CDS 45.0%
GCAAATGGAAACGTCTACAC+TGG + chr4_2:68182289-68182308 Msa0617580:CDS 45.0%
AAAGGGGAAAGGGATGGAAA+AGG + chr4_2:68182598-68182617 Msa0617580:CDS 45.0%
AAGGGGAAAGGGATGGAAAA+GGG + chr4_2:68182599-68182618 Msa0617580:CDS 45.0%
! GCTAACGGTGATGTTTTCGA+TGG + chr4_2:68182634-68182653 Msa0617580:CDS 45.0%
GCAAATGGAGATGTCTACAC+TGG + chr4_2:68182703-68182722 Msa0617580:CDS 45.0%
AACAATGTACGAGGGCGATT+GGG + chr4_2:68182780-68182799 Msa0617580:CDS 45.0%
!! GGGAATGGATTGATGATACC+AGG + chr4_2:68182820-68182839 Msa0617580:CDS 45.0%
!! TGATAGCTAGCTTTCAAGGG+AGG + chr4_2:68183490-68183509 Msa0617580:intron 45.0%
GGGATGTCTACGCTGGAAAT+TGG + chr4_2:68182434-68182453 Msa0617580:CDS 50.0%
TGGGAAAAAGGGGAAAGGGA+TGG + chr4_2:68182592-68182611 Msa0617580:CDS 50.0%
GAACAATGTACGAGGGCGAT+TGG + chr4_2:68182779-68182798 Msa0617580:CDS 50.0%
CATGATGATTAGGGGAGGAG+CGG + chr4_2:68183779-68183798 Msa0617580:three_prime_UTR 50.0%
AGCGGTTGCTATAGGAGTCT+AGG + chr4_2:68183797-68183816 Msa0617580:three_prime_UTR 50.0%
! TACGAGGGTGACTGGGTTGA+TGG + chr4_2:68182166-68182185 Msa0617580:CDS 55.0%
GCAAATGGGGATGTCTACGC+TGG + chr4_2:68182427-68182446 Msa0617580:CDS 55.0%
!! TACGAGGGCGATTGGGTTGA+TGG + chr4_2:68182787-68182806 Msa0617580:CDS 55.0%
AGGGGAGGAGCGGTTGCTAT+AGG + chr4_2:68183789-68183808 Msa0617580:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 68181320 68184170 68181320 ID=Msa0617580;Name=Msa0617580
chr4_2 mRNA 68181320 68184170 68181320 ID=Msa0617580-mRNA-1;Parent=Msa0617580;Name=Msa0617580-mRNA-1;_AED=0.37;_eAED=0.37;_QI=202|1|1|1|0.33|0|4|481|287
chr4_2 exon 68181320 68181487 68181320 ID=Msa0617580-mRNA-1:exon:19587;Parent=Msa0617580-mRNA-1
chr4_2 exon 68181860 68181931 68181860 ID=Msa0617580-mRNA-1:exon:19588;Parent=Msa0617580-mRNA-1
chr4_2 exon 68182063 68182913 68182063 ID=Msa0617580-mRNA-1:exon:19589;Parent=Msa0617580-mRNA-1
chr4_2 exon 68183715 68184170 68183715 ID=Msa0617580-mRNA-1:exon:19590;Parent=Msa0617580-mRNA-1
chr4_2 five_prime_UTR 68181320 68181487 68181320 ID=Msa0617580-mRNA-1:five_prime_utr;Parent=Msa0617580-mRNA-1
chr4_2 five_prime_UTR 68181860 68181893 68181860 ID=Msa0617580-mRNA-1:five_prime_utr;Parent=Msa0617580-mRNA-1
chr4_2 CDS 68181894 68181931 68181894 ID=Msa0617580-mRNA-1:cds;Parent=Msa0617580-mRNA-1
chr4_2 CDS 68182063 68182888 68182063 ID=Msa0617580-mRNA-1:cds;Parent=Msa0617580-mRNA-1
chr4_2 three_prime_UTR 68182889 68182913 68182889 ID=Msa0617580-mRNA-1:three_prime_utr;Parent=Msa0617580-mRNA-1
chr4_2 three_prime_UTR 68183715 68184170 68183715 ID=Msa0617580-mRNA-1:three_prime_utr;Parent=Msa0617580-mRNA-1
Gene Sequence

>Msa0617580

ATGAGTGAAAGAATGCAAGTCATGGAGGATGATGGAAGTGTTAAAGAGAAGTTCTTTTCAAATGGGGATGTCTACATTGGTAAATTCAAGGGTGAACTTCTTCATGGCATCGGAAAGTACACATGGACAAATGGAACAATATACGAGGGTGACTGGGTTGATGGAAAAGTGACAGGGAAAGGGATTATGAATTGGGGTAATGGTGCCATTTTCGATGGTTGTTGGTCAAATGGACTTTCACATGGATATGGAGTTTATAGATCTGCAAATGGAAACGTCTACACTGGAAATTGGGAAAAAGGTGAAAGGCATGGAAAAGGGATTATGAAATGGGCTAACGGTGATGTTTTCAATGGTTATTGGTCAAATGGACATAAACATGGATATGGAGTTTATAGATTTGCAAATGGGGATGTCTACGCTGGAAATTGGGAAAAAGGAGAAAAGGATGGAAAAGGGATTATGAATTGGGCTAATGGTGCTATTTTCGATGGTTGCTGGTCAAATGGACTTTCGCATGGATATGGAGTTTATAGATCTGCAAATGGAAACGTCTACACTGGAAATTGGGAAAAAGGGGAAAGGGATGGAAAAGGGATTATGAAATGGGCTAACGGTGATGTTTTCGATGGTTATTGGTCAAATGGACAGAAACATGGCTATGGAGTTTATAGATTTGCAAATGGAGATGTCTACACTGGAAATTGGAAAAATAATAAAATGGATGGAAGAGGGATTATGAATTGGTCAAATGGAACAATGTACGAGGGCGATTGGGTTGATGGACAAATGATAGGGAATGGATTGATGATACCAGGCTTTCTATGTACATTTTTGAAGACTATCAGACCCATTATCATCTGA

Protein sequence

>Msa0617580

MSERMQVMEDDGSVKEKFFSNGDVYIGKFKGELLHGIGKYTWTNGTIYEGDWVDGKVTGKGIMNWGNGAIFDGCWSNGLSHGYGVYRSANGNVYTGNWEKGERHGKGIMKWANGDVFNGYWSNGHKHGYGVYRFANGDVYAGNWEKGEKDGKGIMNWANGAIFDGCWSNGLSHGYGVYRSANGNVYTGNWEKGERDGKGIMKWANGDVFDGYWSNGQKHGYGVYRFANGDVYTGNWKNNKMDGRGIMNWSNGTMYEGDWVDGQMIGNGLMIPGFLCTFLKTIRPIII*