AlfalfaGEDB | Msa0617580

M. sativa cultivar zhongmu-4 / Msa0617580

KEGG: -
GO: -
PFAM: PF02493.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617580	KEH20623.1	97.561	287	7	0	1	287	1	287	0.0	551

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617580	sp\|Q8RY89\|PI5K8_ARATH	48.677	189	97	16	204	7	195	5.47e-53	187
Msa0617580	sp\|Q8RY89\|PI5K8_ARATH	41.209	182	107	65	246	10	191	6.18e-39	148
Msa0617580	sp\|Q8RY89\|PI5K8_ARATH	40.881	159	94	111	269	10	168	3.90e-32	128

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617580	A0A072TUU3	97.561	287	7	0	1	287	1	287	0.0	551

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004860	Msa0617580	0.854271	1.375812e-61	-8.615850e-47
Msa0004920	Msa0617580	0.841318	5.109297e-58	-8.615850e-47
Msa0008410	Msa0617580	0.807071	6.046102e-50	-8.615850e-47
Msa0031820	Msa0617580	0.801517	8.674154e-49	-8.615850e-47
Msa0036140	Msa0617580	0.800613	1.327291e-48	-8.615850e-47
Msa0040450	Msa0617580	0.803339	3.655196e-49	-8.615850e-47
Msa0051770	Msa0617580	0.848390	6.317750e-60	-8.615850e-47
Msa0056030	Msa0617580	0.820741	5.844661e-53	-8.615850e-47
Msa0057140	Msa0617580	0.821355	4.220502e-53	-8.615850e-47
Msa0068680	Msa0617580	0.822281	2.575801e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617580	MtrunA17_Chr8g0377671	97.561	287	7	0	1	287	1	287	0.0	551
Msa0617580	MtrunA17_Chr8g0377191	71.144	201	58	0	13	213	5	205	1.17e-96	283
Msa0617580	MtrunA17_Chr8g0377191	56.329	158	69	0	113	270	13	170	9.99e-53	171
Msa0617580	MtrunA17_Chr8g0377191	50.000	114	57	0	156	269	10	123	8.24e-29	109
Msa0617580	MtrunA17_Chr8g0385241	46.471	340	102	3	12	271	2	341	1.72e-84	259
Msa0617580	MtrunA17_Chr8g0385241	38.889	162	75	2	21	158	182	343	1.22e-22	96.7
Msa0617580	MtrunA17_Chr4g0059911	51.737	259	123	2	15	271	4	262	3.04e-80	247
Msa0617580	MtrunA17_Chr8g0382971	42.216	334	131	4	15	286	20	353	5.20e-69	218
Msa0617580	MtrunA17_Chr8g0377211	69.481	154	46	1	134	287	19	171	2.28e-68	209
Msa0617580	MtrunA17_Chr8g0377211	58.757	177	49	2	1	177	1	153	9.03e-61	190

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617580	AT1G60890.2	48.677	189	97	16	204	19	207	5.30e-54	187
Msa0617580	AT1G60890.2	41.209	182	107	65	246	22	203	5.14e-40	148
Msa0617580	AT1G60890.2	40.881	159	94	111	269	22	180	3.41e-33	129
Msa0617580	AT1G60890.1	48.677	189	97	16	204	7	195	5.56e-54	187
Msa0617580	AT1G60890.1	41.209	182	107	65	246	10	191	6.28e-40	148
Msa0617580	AT1G60890.1	40.881	159	94	111	269	10	168	3.96e-33	128
Msa0617580	AT1G10900.2	45.503	189	103	16	204	7	195	2.87e-49	174
Msa0617580	AT1G10900.2	38.798	183	112	64	246	9	191	7.14e-37	139
Msa0617580	AT1G10900.2	38.750	160	98	110	269	9	168	8.42e-30	119
Msa0617580	AT1G10900.1	45.503	189	103	16	204	7	195	2.87e-49	174

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Find 109 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTCTACACTGGAAATT+GGG	0.451480	4_2:+68182297	Msa0617580:CDS
AAACGTCTACACTGGAAATT+GGG	0.451480	4_2:+68182573	Msa0617580:CDS
AAAGGAGAAAAGGATGGAAA+AGG	0.446263	4_2:+68182460	Msa0617580:CDS
AAAGGGGAAAGGGATGGAAA+AGG	0.442937	4_2:+68182598	Msa0617580:CDS
AAAGGTGAAAGGCATGGAAA+AGG	0.474168	4_2:+68182322	Msa0617580:CDS
AACAATATACGAGGGTGACT+GGG	0.562591	4_2:+68182159	Msa0617580:CDS
AACAATGTACGAGGGCGATT+GGG	0.470740	4_2:+68182780	Msa0617580:CDS
AAGGAGAAAAGGATGGAAAA+GGG	0.451607	4_2:+68182461	Msa0617580:CDS
AAGGGGAAAGGGATGGAAAA+GGG	0.430911	4_2:+68182599	Msa0617580:CDS
AAGGTGAAAGGCATGGAAAA+GGG	0.462403	4_2:+68182323	Msa0617580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTATTTGTAGTTAAGTTCG+CGG	+	chr4_2:68181340-68181359	Msa0617580:five_prime_UTR	30.0%
TTTAGAGAAGAGTGGTTAAA+AGG	+	chr4_2:68181435-68181454	Msa0617580:five_prime_UTR	30.0%
AAAAAGAGATCATCGGAAAA+AGG	+	chr4_2:68181466-68181485	Msa0617580:five_prime_UTR	30.0%
GAACGTTAACAGAAATACTA+GGG	-	chr4_2:68181640-68181659	None:intergenic	30.0%
AGAACGTTAACAGAAATACT+AGG	-	chr4_2:68181641-68181660	None:intergenic	30.0%
CTAACAATGATTCACATTCT+GGG	-	chr4_2:68181671-68181690	None:intergenic	30.0%
ATCAACAAAACCCTGAATTA+GGG	+	chr4_2:68181705-68181724	Msa0617580:intron	30.0%
CTTAAATCAACCCTAATTCA+GGG	-	chr4_2:68181718-68181737	None:intergenic	30.0%
TGTCTACATTGGTAAATTCA+AGG	+	chr4_2:68182093-68182112	Msa0617580:CDS	30.0%
GTCTACATTGGTAAATTCAA+GGG	+	chr4_2:68182094-68182113	Msa0617580:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	68181320	68184170	68181320	ID=Msa0617580;Name=Msa0617580
chr4_2	mRNA	68181320	68184170	68181320	ID=Msa0617580-mRNA-1;Parent=Msa0617580;Name=Msa0617580-mRNA-1;_AED=0.37;_eAED=0.37;_QI=202\|1\|1\|1\|0.33\|0\|4\|481\|287
chr4_2	exon	68181320	68181487	68181320	ID=Msa0617580-mRNA-1:exon:19587;Parent=Msa0617580-mRNA-1
chr4_2	exon	68181860	68181931	68181860	ID=Msa0617580-mRNA-1:exon:19588;Parent=Msa0617580-mRNA-1
chr4_2	exon	68182063	68182913	68182063	ID=Msa0617580-mRNA-1:exon:19589;Parent=Msa0617580-mRNA-1
chr4_2	exon	68183715	68184170	68183715	ID=Msa0617580-mRNA-1:exon:19590;Parent=Msa0617580-mRNA-1
chr4_2	five_prime_UTR	68181320	68181487	68181320	ID=Msa0617580-mRNA-1:five_prime_utr;Parent=Msa0617580-mRNA-1
chr4_2	five_prime_UTR	68181860	68181893	68181860	ID=Msa0617580-mRNA-1:five_prime_utr;Parent=Msa0617580-mRNA-1
chr4_2	CDS	68181894	68181931	68181894	ID=Msa0617580-mRNA-1:cds;Parent=Msa0617580-mRNA-1
chr4_2	CDS	68182063	68182888	68182063	ID=Msa0617580-mRNA-1:cds;Parent=Msa0617580-mRNA-1
chr4_2	three_prime_UTR	68182889	68182913	68182889	ID=Msa0617580-mRNA-1:three_prime_utr;Parent=Msa0617580-mRNA-1
chr4_2	three_prime_UTR	68183715	68184170	68183715	ID=Msa0617580-mRNA-1:three_prime_utr;Parent=Msa0617580-mRNA-1

Gene Sequence

>Msa0617580

ATGAGTGAAAGAATGCAAGTCATGGAGGATGATGGAAGTGTTAAAGAGAAGTTCTTTTCAAATGGGGATGTCTACATTGGTAAATTCAAGGGTGAACTTCTTCATGGCATCGGAAAGTACACATGGACAAATGGAACAATATACGAGGGTGACTGGGTTGATGGAAAAGTGACAGGGAAAGGGATTATGAATTGGGGTAATGGTGCCATTTTCGATGGTTGTTGGTCAAATGGACTTTCACATGGATATGGAGTTTATAGATCTGCAAATGGAAACGTCTACACTGGAAATTGGGAAAAAGGTGAAAGGCATGGAAAAGGGATTATGAAATGGGCTAACGGTGATGTTTTCAATGGTTATTGGTCAAATGGACATAAACATGGATATGGAGTTTATAGATTTGCAAATGGGGATGTCTACGCTGGAAATTGGGAAAAAGGAGAAAAGGATGGAAAAGGGATTATGAATTGGGCTAATGGTGCTATTTTCGATGGTTGCTGGTCAAATGGACTTTCGCATGGATATGGAGTTTATAGATCTGCAAATGGAAACGTCTACACTGGAAATTGGGAAAAAGGGGAAAGGGATGGAAAAGGGATTATGAAATGGGCTAACGGTGATGTTTTCGATGGTTATTGGTCAAATGGACAGAAACATGGCTATGGAGTTTATAGATTTGCAAATGGAGATGTCTACACTGGAAATTGGAAAAATAATAAAATGGATGGAAGAGGGATTATGAATTGGTCAAATGGAACAATGTACGAGGGCGATTGGGTTGATGGACAAATGATAGGGAATGGATTGATGATACCAGGCTTTCTATGTACATTTTTGAAGACTATCAGACCCATTATCATCTGA

Protein sequence

>Msa0617580

MSERMQVMEDDGSVKEKFFSNGDVYIGKFKGELLHGIGKYTWTNGTIYEGDWVDGKVTGKGIMNWGNGAIFDGCWSNGLSHGYGVYRSANGNVYTGNWEKGERHGKGIMKWANGDVFNGYWSNGHKHGYGVYRFANGDVYAGNWEKGEKDGKGIMNWANGAIFDGCWSNGLSHGYGVYRSANGNVYTGNWEKGERDGKGIMKWANGDVFDGYWSNGQKHGYGVYRFANGDVYTGNWKNNKMDGRGIMNWSNGTMYEGDWVDGQMIGNGLMIPGFLCTFLKTIRPIII*