Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908930 | KEH16858.1 | 93.651 | 126 | 8 | 0 | 37 | 162 | 15 | 140 | 2.69e-79 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672550 | Msa0908930 | -0.811151 | 8.080329e-51 | -8.615850e-47 |
| Msa0697990 | Msa0908930 | 0.846321 | 2.337758e-59 | -8.615850e-47 |
| Msa0908830 | Msa0908930 | 0.858906 | 5.971037e-63 | -8.615850e-47 |
| Msa0908840 | Msa0908930 | 0.866850 | 2.108268e-65 | -8.615850e-47 |
| Msa0908850 | Msa0908930 | 0.888837 | 4.142861e-73 | -8.615850e-47 |
| Msa0908870 | Msa0908930 | 0.883853 | 3.155788e-71 | -8.615850e-47 |
| Msa0908920 | Msa0908930 | 0.836815 | 7.501583e-57 | -8.615850e-47 |
| Msa0908930 | Msa0920060 | 0.823264 | 1.521284e-53 | -8.615850e-47 |
| Msa0908930 | Msa0944900 | 0.881730 | 1.882292e-70 | -8.615850e-47 |
| Msa0908930 | Msa0944920 | 0.878275 | 3.202968e-69 | -8.615850e-47 |
| Msa0908930 | Msa0944930 | 0.859391 | 4.272981e-63 | -8.615850e-47 |
| Msa0908930 | Msa0944940 | 0.836708 | 7.987376e-57 | -8.615850e-47 |
| Msa0908930 | Msa0944990 | 0.983391 | 1.293262e-157 | -8.615850e-47 |
| Msa0908930 | Msa0983170 | 0.826980 | 2.013828e-54 | -8.615850e-47 |
| Msa0908930 | Msa0983180 | 0.868598 | 5.795461e-66 | -8.615850e-47 |
| Msa0908930 | Msa0983190 | 0.884706 | 1.524960e-71 | -8.615850e-47 |
| Msa0908930 | Msa0983210 | 0.865935 | 4.115330e-65 | -8.615850e-47 |
| Msa0908930 | Msa0983220 | 0.831134 | 1.983175e-55 | -8.615850e-47 |
| Msa0908930 | Msa0983230 | 0.805836 | 1.101336e-49 | -8.615850e-47 |
| Msa0908930 | Msa0983260 | 0.980108 | 1.832509e-149 | -8.615850e-47 |
| Msa0908930 | Msa0983300 | 0.844910 | 5.641016e-59 | -8.615850e-47 |
| Msa0908930 | Msa0983320 | 0.843974 | 1.007242e-58 | -8.615850e-47 |
| Msa0908930 | Msa0983350 | 0.831064 | 2.063277e-55 | -8.615850e-47 |
| Msa0908930 | Msa0983460 | 0.892581 | 1.390792e-74 | -8.615850e-47 |
| Msa0908930 | Msa0983490 | 0.839019 | 2.034475e-57 | -8.615850e-47 |
| Msa0908930 | Msa0983500 | 0.876394 | 1.445755e-68 | -8.615850e-47 |
| Msa0908930 | Msa0983520 | 0.873580 | 1.317129e-67 | -8.615850e-47 |
| Msa0908930 | Msa0983530 | 0.859524 | 3.898334e-63 | -8.615850e-47 |
| Msa0908930 | Msa0983540 | 0.834442 | 2.990950e-56 | -8.615850e-47 |
| Msa0908930 | Msa1228620 | 0.836877 | 7.231613e-57 | -8.615850e-47 |
| Msa0908930 | Msa1391970 | 0.829884 | 4.009634e-55 | -8.615850e-47 |
| Msa0908930 | Msa1392010 | 0.834327 | 3.196152e-56 | -8.615850e-47 |
| Msa0908930 | Msa1392030 | 0.850988 | 1.188755e-60 | -8.615850e-47 |
| Msa0908930 | Msa1392120 | 0.886294 | 3.875103e-72 | -8.615850e-47 |
| Msa0908930 | Msa1392160 | 0.873329 | 1.599715e-67 | -8.615850e-47 |
| Msa0908930 | Msa1466540 | -0.801345 | 9.406964e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGTCTGCTATGCGTTTA+AGG | 0.136313 | 6_2:+9991679 | None:intergenic |
| TCGTCTTGTACCTGTCCTTT+TGG | 0.241491 | 6_2:+9992246 | None:intergenic |
| CGTTAAGCCGCGAGAGTTAC+AGG | 0.278769 | 6_2:-9991799 | Msa0908930:CDS |
| AGCATTCTTTGTGGCCCTAT+TGG | 0.280009 | 6_2:-9992355 | Msa0908930:five_prime_UTR |
| TTGGTTGTCACTCGAGTTAC+AGG | 0.291580 | 6_2:-9991738 | Msa0908930:CDS |
| CTGTACGTTCCTTTAGCTAT+AGG | 0.323026 | 6_2:-9991519 | Msa0908930:CDS |
| CGGATATGCTAGTCAAGATT+TGG | 0.353308 | 6_2:-9991757 | Msa0908930:CDS |
| AAAGTCTCCTTTCTTCTTGA+CGG | 0.366612 | 6_2:-9991606 | Msa0908930:CDS |
| TGTTCTTAAAGCATTCTTTG+TGG | 0.408726 | 6_2:-9992364 | None:intergenic |
| TGGCCCTATTGGATCTAGTA+AGG | 0.416151 | 6_2:-9992344 | Msa0908930:five_prime_UTR |
| TTCCCCTTACTAGATCCAAT+AGG | 0.442615 | 6_2:+9992340 | None:intergenic |
| TCAGCATGAAAAGGCATTGA+AGG | 0.461639 | 6_2:+9992196 | None:intergenic |
| GCTGTCTGCTATGCGTTTAA+GGG | 0.465623 | 6_2:+9991680 | None:intergenic |
| CTCTAAACCGTCAAGAAGAA+AGG | 0.482951 | 6_2:+9991599 | None:intergenic |
| TATGTGGAACGGACTATTCT+CGG | 0.483217 | 6_2:+9991486 | None:intergenic |
| TCCCCTTACTAGATCCAATA+GGG | 0.483736 | 6_2:+9992341 | None:intergenic |
| AGTAAGGGGAAGGCGCATAA+TGG | 0.485728 | 6_2:-9992328 | Msa0908930:five_prime_UTR |
| AAGAGAGAGGCTGTCCCAAA+AGG | 0.504987 | 6_2:-9992261 | Msa0908930:CDS |
| CGTGGTATCTGACGGGACAT+TGG | 0.510924 | 6_2:-9991563 | Msa0908930:CDS |
| TAGAGCTTGAACGTGGGCCG+TGG | 0.522206 | 6_2:-9991581 | Msa0908930:CDS |
| AGAGGCTGTCCCAAAAGGAC+AGG | 0.534725 | 6_2:-9992256 | Msa0908930:CDS |
| GCTATGCGTTTAAGGGCATA+AGG | 0.534942 | 6_2:+9991687 | None:intergenic |
| GGAACGGACTATTCTCGGAT+TGG | 0.537533 | 6_2:+9991491 | None:intergenic |
| GACGGTTTAGAGCTTGAACG+TGG | 0.549700 | 6_2:-9991588 | Msa0908930:CDS |
| TCTACCCAATCAGCATGAAA+AGG | 0.549978 | 6_2:+9992187 | None:intergenic |
| CATTGGCCTCCCTCCCGCTA+CGG | 0.557319 | 6_2:-9991546 | Msa0908930:CDS |
| AGCGAGCCGTAGCGGGAGGG+AGG | 0.562909 | 6_2:+9991540 | None:intergenic |
| ACGTGGGCCGTGGTATCTGA+CGG | 0.566135 | 6_2:-9991571 | Msa0908930:CDS |
| GGCCCTATTGGATCTAGTAA+GGG | 0.583375 | 6_2:-9992343 | Msa0908930:five_prime_UTR |
| TTGGACACGCCTATAGCTAA+AGG | 0.585840 | 6_2:+9991510 | None:intergenic |
| CAGCATGAAAAGGCATTGAA+GGG | 0.604261 | 6_2:+9992197 | None:intergenic |
| CAATGTCCCGTCAGATACCA+CGG | 0.604719 | 6_2:+9991564 | None:intergenic |
| CAGGAGAGGAGCGAAGTGAG+AGG | 0.607142 | 6_2:-9991780 | Msa0908930:CDS |
| GTACAGCGAGCCGTAGCGGG+AGG | 0.612644 | 6_2:+9991536 | None:intergenic |
| TATTGGATCTAGTAAGGGGA+AGG | 0.613431 | 6_2:-9992338 | Msa0908930:five_prime_UTR |
| GAACGTACAGCGAGCCGTAG+CGG | 0.616840 | 6_2:+9991532 | None:intergenic |
| GCCCTATTGGATCTAGTAAG+GGG | 0.621995 | 6_2:-9992342 | Msa0908930:five_prime_UTR |
| ACGGTTTAGAGCTTGAACGT+GGG | 0.631741 | 6_2:-9991587 | Msa0908930:CDS |
| CTTCCTTGCACTATGTGGAA+CGG | 0.640584 | 6_2:+9991475 | None:intergenic |
| GAGAGGAGCGAAGTGAGAGG+CGG | 0.650312 | 6_2:-9991777 | Msa0908930:CDS |
| AGGACAGGTACAAGACGAAG+TGG | 0.651118 | 6_2:-9992241 | Msa0908930:CDS |
| GTCACTCGAGTTACAGGAGA+GGG | 0.651239 | 6_2:-9991732 | Msa0908930:CDS |
| CTCCTCTCCTGTAACTCTCG+CGG | 0.659926 | 6_2:+9991792 | None:intergenic |
| AGCCGCGAGAGTTACAGGAG+AGG | 0.663478 | 6_2:-9991794 | Msa0908930:CDS |
| CACATATGAGAAGTGAAACG+TGG | 0.676128 | 6_2:+9991638 | None:intergenic |
| TGTCACTCGAGTTACAGGAG+AGG | 0.744502 | 6_2:-9991733 | Msa0908930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAGAGTTTTGAAAGATGAA+AGG | - | chr6_2:9991538-9991557 | Msa0908930:CDS | 30.0% |
| !!! | GTTTTGAAAGATGAAAGGAA+AGG | - | chr6_2:9991543-9991562 | Msa0908930:CDS | 30.0% |
| ACTAGATATAAGCTATAGGA+TGG | + | chr6_2:9991774-9991793 | None:intergenic | 30.0% | |
| AGTCACTAGATATAAGCTAT+AGG | + | chr6_2:9991778-9991797 | None:intergenic | 30.0% | |
| !! | TGCTTTGAGTTGTATGTTTA+TGG | - | chr6_2:9991849-9991868 | Msa0908930:intron | 30.0% |
| !! | GCTTTGAGTTGTATGTTTAT+GGG | - | chr6_2:9991850-9991869 | Msa0908930:intron | 30.0% |
| AGTTGTATGTTTATGGGTAA+GGG | - | chr6_2:9991856-9991875 | Msa0908930:intron | 30.0% | |
| GGGGAAAGCAAATAAAATAA+AGG | - | chr6_2:9991876-9991895 | Msa0908930:intron | 30.0% | |
| ATCTATCAAGAAGGATGAAT+AGG | + | chr6_2:9991907-9991926 | None:intergenic | 30.0% | |
| GATGAAGAAATCTATCAAGA+AGG | + | chr6_2:9991916-9991935 | None:intergenic | 30.0% | |
| ! | AAGAAGAAAGGAGACTTTTA+GGG | + | chr6_2:9992233-9992252 | None:intergenic | 30.0% |
| !!! | TGAGAGTTTTGAAAGATGAA+AGG | - | chr6_2:9991538-9991557 | Msa0908930:CDS | 30.0% |
| !!! | GTTTTGAAAGATGAAAGGAA+AGG | - | chr6_2:9991543-9991562 | Msa0908930:CDS | 30.0% |
| ACTAGATATAAGCTATAGGA+TGG | + | chr6_2:9991774-9991793 | None:intergenic | 30.0% | |
| AGTCACTAGATATAAGCTAT+AGG | + | chr6_2:9991778-9991797 | None:intergenic | 30.0% | |
| !! | TGCTTTGAGTTGTATGTTTA+TGG | - | chr6_2:9991849-9991868 | Msa0908930:intron | 30.0% |
| !! | GCTTTGAGTTGTATGTTTAT+GGG | - | chr6_2:9991850-9991869 | Msa0908930:intron | 30.0% |
| AGTTGTATGTTTATGGGTAA+GGG | - | chr6_2:9991856-9991875 | Msa0908930:intron | 30.0% | |
| GGGGAAAGCAAATAAAATAA+AGG | - | chr6_2:9991876-9991895 | Msa0908930:intron | 30.0% | |
| ATCTATCAAGAAGGATGAAT+AGG | + | chr6_2:9991907-9991926 | None:intergenic | 30.0% | |
| GATGAAGAAATCTATCAAGA+AGG | + | chr6_2:9991916-9991935 | None:intergenic | 30.0% | |
| ! | AAGAAGAAAGGAGACTTTTA+GGG | + | chr6_2:9992233-9992252 | None:intergenic | 30.0% |
| !! | CTCTCTCTTCATCTTTTTCA+TGG | + | chr6_2:9991569-9991588 | None:intergenic | 35.0% |
| CATGAAAAAGATGAAGAGAG+AGG | - | chr6_2:9991567-9991586 | Msa0908930:CDS | 35.0% | |
| !! | AATGCCTTTTCATGCTGATT+GGG | - | chr6_2:9991650-9991669 | Msa0908930:CDS | 35.0% |
| GATAGCCTATATATAAGGTC+AGG | + | chr6_2:9991744-9991763 | None:intergenic | 35.0% | |
| TTGGGGATAGCCTATATATA+AGG | + | chr6_2:9991749-9991768 | None:intergenic | 35.0% | |
| ! | ATAAGCTATAGGATGGACTT+GGG | + | chr6_2:9991767-9991786 | None:intergenic | 35.0% |
| ! | TATAAGCTATAGGATGGACT+TGG | + | chr6_2:9991768-9991787 | None:intergenic | 35.0% |
| ! | TATCCTTTTCACTAAGCTCT+TGG | - | chr6_2:9991800-9991819 | Msa0908930:CDS | 35.0% |
| ATTCCAAGAGCTTAGTGAAA+AGG | + | chr6_2:9991806-9991825 | None:intergenic | 35.0% | |
| GAGTTGTATGTTTATGGGTA+AGG | - | chr6_2:9991855-9991874 | Msa0908930:intron | 35.0% | |
| GTTGTATGTTTATGGGTAAG+GGG | - | chr6_2:9991857-9991876 | Msa0908930:intron | 35.0% | |
| GCAACAGATCAATATGAATG+AGG | + | chr6_2:9991995-9992014 | None:intergenic | 35.0% | |
| ! | AGAAGAAAGGAGACTTTTAG+GGG | + | chr6_2:9992232-9992251 | None:intergenic | 35.0% |
| ! | CAAGAAGAAAGGAGACTTTT+AGG | + | chr6_2:9992234-9992253 | None:intergenic | 35.0% |
| AAAGTCTCCTTTCTTCTTGA+CGG | - | chr6_2:9992235-9992254 | Msa0908930:CDS | 35.0% | |
| !! | CTCTCTCTTCATCTTTTTCA+TGG | + | chr6_2:9991569-9991588 | None:intergenic | 35.0% |
| CATGAAAAAGATGAAGAGAG+AGG | - | chr6_2:9991567-9991586 | Msa0908930:CDS | 35.0% | |
| !! | AATGCCTTTTCATGCTGATT+GGG | - | chr6_2:9991650-9991669 | Msa0908930:CDS | 35.0% |
| GATAGCCTATATATAAGGTC+AGG | + | chr6_2:9991744-9991763 | None:intergenic | 35.0% | |
| TTGGGGATAGCCTATATATA+AGG | + | chr6_2:9991749-9991768 | None:intergenic | 35.0% | |
| ! | ATAAGCTATAGGATGGACTT+GGG | + | chr6_2:9991767-9991786 | None:intergenic | 35.0% |
| ! | TATAAGCTATAGGATGGACT+TGG | + | chr6_2:9991768-9991787 | None:intergenic | 35.0% |
| ! | TATCCTTTTCACTAAGCTCT+TGG | - | chr6_2:9991800-9991819 | Msa0908930:CDS | 35.0% |
| ATTCCAAGAGCTTAGTGAAA+AGG | + | chr6_2:9991806-9991825 | None:intergenic | 35.0% | |
| GAGTTGTATGTTTATGGGTA+AGG | - | chr6_2:9991855-9991874 | Msa0908930:intron | 35.0% | |
| GTTGTATGTTTATGGGTAAG+GGG | - | chr6_2:9991857-9991876 | Msa0908930:intron | 35.0% | |
| GCAACAGATCAATATGAATG+AGG | + | chr6_2:9991995-9992014 | None:intergenic | 35.0% | |
| ! | AGAAGAAAGGAGACTTTTAG+GGG | + | chr6_2:9992232-9992251 | None:intergenic | 35.0% |
| ! | CAAGAAGAAAGGAGACTTTT+AGG | + | chr6_2:9992234-9992253 | None:intergenic | 35.0% |
| AAAGTCTCCTTTCTTCTTGA+CGG | - | chr6_2:9992235-9992254 | Msa0908930:CDS | 35.0% | |
| TCCCCTTACTAGATCCAATA+GGG | + | chr6_2:9991503-9991522 | None:intergenic | 40.0% | |
| TTCCCCTTACTAGATCCAAT+AGG | + | chr6_2:9991504-9991523 | None:intergenic | 40.0% | |
| TATTGGATCTAGTAAGGGGA+AGG | - | chr6_2:9991503-9991522 | Msa0908930:CDS | 40.0% | |
| !! | CAGCATGAAAAGGCATTGAA+GGG | + | chr6_2:9991647-9991666 | None:intergenic | 40.0% |
| !! | TCAGCATGAAAAGGCATTGA+AGG | + | chr6_2:9991648-9991667 | None:intergenic | 40.0% |
| ! | CAATGCCTTTTCATGCTGAT+TGG | - | chr6_2:9991649-9991668 | Msa0908930:CDS | 40.0% |
| TCTACCCAATCAGCATGAAA+AGG | + | chr6_2:9991657-9991676 | None:intergenic | 40.0% | |
| GGGTAGAAGAAATTTGACCT+CGG | - | chr6_2:9991670-9991689 | Msa0908930:CDS | 40.0% | |
| AGAAGAAATTTGACCTCGGT+TGG | - | chr6_2:9991674-9991693 | Msa0908930:CDS | 40.0% | |
| ACCGACCTGACCTTATATAT+AGG | - | chr6_2:9991736-9991755 | Msa0908930:CDS | 40.0% | |
| GCCTATATATAAGGTCAGGT+CGG | + | chr6_2:9991740-9991759 | None:intergenic | 40.0% | |
| ! | TAAGCTATAGGATGGACTTG+GGG | + | chr6_2:9991766-9991785 | None:intergenic | 40.0% |
| CTTCATCAACAAGCAAAGAG+AGG | - | chr6_2:9991929-9991948 | Msa0908930:intron | 40.0% | |
| CAACAAGCAAAGAGAGGTTT+AGG | - | chr6_2:9991935-9991954 | Msa0908930:intron | 40.0% | |
| CTGTTGAGAATCTTGGATCA+TGG | + | chr6_2:9991961-9991980 | None:intergenic | 40.0% | |
| CATGATCCAAGATTCTCAAC+AGG | - | chr6_2:9991959-9991978 | Msa0908930:intron | 40.0% | |
| CTTGTTCCTGTTGAGAATCT+TGG | + | chr6_2:9991968-9991987 | None:intergenic | 40.0% | |
| CAAGATTCTCAACAGGAACA+AGG | - | chr6_2:9991966-9991985 | Msa0908930:intron | 40.0% | |
| CGGATATGCTAGTCAAGATT+TGG | - | chr6_2:9992084-9992103 | Msa0908930:intron | 40.0% | |
| CACATATGAGAAGTGAAACG+TGG | + | chr6_2:9992206-9992225 | None:intergenic | 40.0% | |
| CTCTAAACCGTCAAGAAGAA+AGG | + | chr6_2:9992245-9992264 | None:intergenic | 40.0% | |
| CTGTACGTTCCTTTAGCTAT+AGG | - | chr6_2:9992322-9992341 | Msa0908930:exon | 40.0% | |
| TCCCCTTACTAGATCCAATA+GGG | + | chr6_2:9991503-9991522 | None:intergenic | 40.0% | |
| TTCCCCTTACTAGATCCAAT+AGG | + | chr6_2:9991504-9991523 | None:intergenic | 40.0% | |
| TATTGGATCTAGTAAGGGGA+AGG | - | chr6_2:9991503-9991522 | Msa0908930:CDS | 40.0% | |
| !! | CAGCATGAAAAGGCATTGAA+GGG | + | chr6_2:9991647-9991666 | None:intergenic | 40.0% |
| !! | TCAGCATGAAAAGGCATTGA+AGG | + | chr6_2:9991648-9991667 | None:intergenic | 40.0% |
| ! | CAATGCCTTTTCATGCTGAT+TGG | - | chr6_2:9991649-9991668 | Msa0908930:CDS | 40.0% |
| TCTACCCAATCAGCATGAAA+AGG | + | chr6_2:9991657-9991676 | None:intergenic | 40.0% | |
| GGGTAGAAGAAATTTGACCT+CGG | - | chr6_2:9991670-9991689 | Msa0908930:CDS | 40.0% | |
| AGAAGAAATTTGACCTCGGT+TGG | - | chr6_2:9991674-9991693 | Msa0908930:CDS | 40.0% | |
| ACCGACCTGACCTTATATAT+AGG | - | chr6_2:9991736-9991755 | Msa0908930:CDS | 40.0% | |
| GCCTATATATAAGGTCAGGT+CGG | + | chr6_2:9991740-9991759 | None:intergenic | 40.0% | |
| ! | TAAGCTATAGGATGGACTTG+GGG | + | chr6_2:9991766-9991785 | None:intergenic | 40.0% |
| CTTCATCAACAAGCAAAGAG+AGG | - | chr6_2:9991929-9991948 | Msa0908930:intron | 40.0% | |
| CAACAAGCAAAGAGAGGTTT+AGG | - | chr6_2:9991935-9991954 | Msa0908930:intron | 40.0% | |
| CTGTTGAGAATCTTGGATCA+TGG | + | chr6_2:9991961-9991980 | None:intergenic | 40.0% | |
| CATGATCCAAGATTCTCAAC+AGG | - | chr6_2:9991959-9991978 | Msa0908930:intron | 40.0% | |
| CTTGTTCCTGTTGAGAATCT+TGG | + | chr6_2:9991968-9991987 | None:intergenic | 40.0% | |
| CAAGATTCTCAACAGGAACA+AGG | - | chr6_2:9991966-9991985 | Msa0908930:intron | 40.0% | |
| CGGATATGCTAGTCAAGATT+TGG | - | chr6_2:9992084-9992103 | Msa0908930:intron | 40.0% | |
| CACATATGAGAAGTGAAACG+TGG | + | chr6_2:9992206-9992225 | None:intergenic | 40.0% | |
| CTCTAAACCGTCAAGAAGAA+AGG | + | chr6_2:9992245-9992264 | None:intergenic | 40.0% | |
| CTGTACGTTCCTTTAGCTAT+AGG | - | chr6_2:9992322-9992341 | Msa0908930:exon | 40.0% | |
| TGGCCCTATTGGATCTAGTA+AGG | - | chr6_2:9991497-9991516 | Msa0908930:CDS | 45.0% | |
| GGCCCTATTGGATCTAGTAA+GGG | - | chr6_2:9991498-9991517 | Msa0908930:CDS | 45.0% | |
| GCCCTATTGGATCTAGTAAG+GGG | - | chr6_2:9991499-9991518 | Msa0908930:CDS | 45.0% | |
| ! | CGTCTTGTACCTGTCCTTTT+GGG | + | chr6_2:9991597-9991616 | None:intergenic | 45.0% |
| ! | TCGTCTTGTACCTGTCCTTT+TGG | + | chr6_2:9991598-9991617 | None:intergenic | 45.0% |
| TCAAAGCAAGTGAGCAGCTT+GGG | + | chr6_2:9991837-9991856 | None:intergenic | 45.0% | |
| TTGATCTGTTGCGAAGCTAC+AGG | - | chr6_2:9992003-9992022 | Msa0908930:intron | 45.0% | |
| TGATCTGTTGCGAAGCTACA+GGG | - | chr6_2:9992004-9992023 | Msa0908930:intron | 45.0% | |
| TTGGTTGTCACTCGAGTTAC+AGG | - | chr6_2:9992103-9992122 | Msa0908930:intron | 45.0% | |
| ! | GCTATGCGTTTAAGGGCATA+AGG | + | chr6_2:9992157-9992176 | None:intergenic | 45.0% |
| GCTGTCTGCTATGCGTTTAA+GGG | + | chr6_2:9992164-9992183 | None:intergenic | 45.0% | |
| AGCTGTCTGCTATGCGTTTA+AGG | + | chr6_2:9992165-9992184 | None:intergenic | 45.0% | |
| !! | AGAAAGGAGACTTTTAGGGG+AGG | + | chr6_2:9992229-9992248 | None:intergenic | 45.0% |
| ! | ACGGTTTAGAGCTTGAACGT+GGG | - | chr6_2:9992254-9992273 | Msa0908930:CDS | 45.0% |
| TTGGACACGCCTATAGCTAA+AGG | + | chr6_2:9992334-9992353 | None:intergenic | 45.0% | |
| TGGCCCTATTGGATCTAGTA+AGG | - | chr6_2:9991497-9991516 | Msa0908930:CDS | 45.0% | |
| GGCCCTATTGGATCTAGTAA+GGG | - | chr6_2:9991498-9991517 | Msa0908930:CDS | 45.0% | |
| GCCCTATTGGATCTAGTAAG+GGG | - | chr6_2:9991499-9991518 | Msa0908930:CDS | 45.0% | |
| ! | CGTCTTGTACCTGTCCTTTT+GGG | + | chr6_2:9991597-9991616 | None:intergenic | 45.0% |
| ! | TCGTCTTGTACCTGTCCTTT+TGG | + | chr6_2:9991598-9991617 | None:intergenic | 45.0% |
| TCAAAGCAAGTGAGCAGCTT+GGG | + | chr6_2:9991837-9991856 | None:intergenic | 45.0% | |
| TTGATCTGTTGCGAAGCTAC+AGG | - | chr6_2:9992003-9992022 | Msa0908930:intron | 45.0% | |
| TGATCTGTTGCGAAGCTACA+GGG | - | chr6_2:9992004-9992023 | Msa0908930:intron | 45.0% | |
| TTGGTTGTCACTCGAGTTAC+AGG | - | chr6_2:9992103-9992122 | Msa0908930:intron | 45.0% | |
| ! | GCTATGCGTTTAAGGGCATA+AGG | + | chr6_2:9992157-9992176 | None:intergenic | 45.0% |
| GCTGTCTGCTATGCGTTTAA+GGG | + | chr6_2:9992164-9992183 | None:intergenic | 45.0% | |
| AGCTGTCTGCTATGCGTTTA+AGG | + | chr6_2:9992165-9992184 | None:intergenic | 45.0% | |
| !! | AGAAAGGAGACTTTTAGGGG+AGG | + | chr6_2:9992229-9992248 | None:intergenic | 45.0% |
| ! | ACGGTTTAGAGCTTGAACGT+GGG | - | chr6_2:9992254-9992273 | Msa0908930:CDS | 45.0% |
| TTGGACACGCCTATAGCTAA+AGG | + | chr6_2:9992334-9992353 | None:intergenic | 45.0% | |
| ! | AGTAAGGGGAAGGCGCATAA+TGG | - | chr6_2:9991513-9991532 | Msa0908930:CDS | 50.0% |
| AAGAGAGAGGCTGTCCCAAA+AGG | - | chr6_2:9991580-9991599 | Msa0908930:CDS | 50.0% | |
| AGGACAGGTACAAGACGAAG+TGG | - | chr6_2:9991600-9991619 | Msa0908930:CDS | 50.0% | |
| CTCAAAGCAAGTGAGCAGCT+TGG | + | chr6_2:9991838-9991857 | None:intergenic | 50.0% | |
| GATCTGTTGCGAAGCTACAG+GGG | - | chr6_2:9992005-9992024 | Msa0908930:intron | 50.0% | |
| TGTCACTCGAGTTACAGGAG+AGG | - | chr6_2:9992108-9992127 | Msa0908930:intron | 50.0% | |
| GTCACTCGAGTTACAGGAGA+GGG | - | chr6_2:9992109-9992128 | Msa0908930:intron | 50.0% | |
| ! | GACGGTTTAGAGCTTGAACG+TGG | - | chr6_2:9992253-9992272 | Msa0908930:CDS | 50.0% |
| CAATGTCCCGTCAGATACCA+CGG | + | chr6_2:9992280-9992299 | None:intergenic | 50.0% | |
| !! | GGAACGGACTATTCTCGGAT+TGG | + | chr6_2:9992353-9992372 | None:intergenic | 50.0% |
| ! | AGTAAGGGGAAGGCGCATAA+TGG | - | chr6_2:9991513-9991532 | Msa0908930:CDS | 50.0% |
| AAGAGAGAGGCTGTCCCAAA+AGG | - | chr6_2:9991580-9991599 | Msa0908930:CDS | 50.0% | |
| AGGACAGGTACAAGACGAAG+TGG | - | chr6_2:9991600-9991619 | Msa0908930:CDS | 50.0% | |
| CTCAAAGCAAGTGAGCAGCT+TGG | + | chr6_2:9991838-9991857 | None:intergenic | 50.0% | |
| GATCTGTTGCGAAGCTACAG+GGG | - | chr6_2:9992005-9992024 | Msa0908930:intron | 50.0% | |
| TGTCACTCGAGTTACAGGAG+AGG | - | chr6_2:9992108-9992127 | Msa0908930:intron | 50.0% | |
| GTCACTCGAGTTACAGGAGA+GGG | - | chr6_2:9992109-9992128 | Msa0908930:intron | 50.0% | |
| ! | GACGGTTTAGAGCTTGAACG+TGG | - | chr6_2:9992253-9992272 | Msa0908930:CDS | 50.0% |
| CAATGTCCCGTCAGATACCA+CGG | + | chr6_2:9992280-9992299 | None:intergenic | 50.0% | |
| !! | GGAACGGACTATTCTCGGAT+TGG | + | chr6_2:9992353-9992372 | None:intergenic | 50.0% |
| AGAGGCTGTCCCAAAAGGAC+AGG | - | chr6_2:9991585-9991604 | Msa0908930:CDS | 55.0% | |
| ! | TTTGACCTCGGTTGGTGCAC+CGG | - | chr6_2:9991682-9991701 | Msa0908930:CDS | 55.0% |
| CGTTAAGCCGCGAGAGTTAC+AGG | - | chr6_2:9992042-9992061 | Msa0908930:intron | 55.0% | |
| CTCCTCTCCTGTAACTCTCG+CGG | + | chr6_2:9992052-9992071 | None:intergenic | 55.0% | |
| CGTGGTATCTGACGGGACAT+TGG | - | chr6_2:9992278-9992297 | Msa0908930:CDS | 55.0% | |
| AGAGGCTGTCCCAAAAGGAC+AGG | - | chr6_2:9991585-9991604 | Msa0908930:CDS | 55.0% | |
| ! | TTTGACCTCGGTTGGTGCAC+CGG | - | chr6_2:9991682-9991701 | Msa0908930:CDS | 55.0% |
| CGTTAAGCCGCGAGAGTTAC+AGG | - | chr6_2:9992042-9992061 | Msa0908930:intron | 55.0% | |
| CTCCTCTCCTGTAACTCTCG+CGG | + | chr6_2:9992052-9992071 | None:intergenic | 55.0% | |
| CGTGGTATCTGACGGGACAT+TGG | - | chr6_2:9992278-9992297 | Msa0908930:CDS | 55.0% | |
| GTATACCGGTGCACCAACCG+AGG | + | chr6_2:9991690-9991709 | None:intergenic | 60.0% | |
| ACCGGTATACCCCCTCCATC+AGG | - | chr6_2:9991700-9991719 | Msa0908930:CDS | 60.0% | |
| ! | CCCTGATGGAGGGGGTATAC+CGG | + | chr6_2:9991704-9991723 | None:intergenic | 60.0% |
| CCGGTATACCCCCTCCATCA+GGG | - | chr6_2:9991701-9991720 | Msa0908930:CDS | 60.0% | |
| CGGTATACCCCCTCCATCAG+GGG | - | chr6_2:9991702-9991721 | Msa0908930:CDS | 60.0% | |
| GCACAATCCCCTGATGGAGG+GGG | + | chr6_2:9991712-9991731 | None:intergenic | 60.0% | |
| CGCACAATCCCCTGATGGAG+GGG | + | chr6_2:9991713-9991732 | None:intergenic | 60.0% | |
| CCGCACAATCCCCTGATGGA+GGG | + | chr6_2:9991714-9991733 | None:intergenic | 60.0% | |
| CCCTCCATCAGGGGATTGTG+CGG | - | chr6_2:9991711-9991730 | Msa0908930:CDS | 60.0% | |
| CCTCCATCAGGGGATTGTGC+GGG | - | chr6_2:9991712-9991731 | Msa0908930:CDS | 60.0% | |
| GTTCCCGCACAATCCCCTGA+TGG | + | chr6_2:9991718-9991737 | None:intergenic | 60.0% | |
| AGCCGCGAGAGTTACAGGAG+AGG | - | chr6_2:9992047-9992066 | Msa0908930:intron | 60.0% | |
| CAGGAGAGGAGCGAAGTGAG+AGG | - | chr6_2:9992061-9992080 | Msa0908930:intron | 60.0% | |
| GAGAGGAGCGAAGTGAGAGG+CGG | - | chr6_2:9992064-9992083 | Msa0908930:intron | 60.0% | |
| TAGAGCTTGAACGTGGGCCG+TGG | - | chr6_2:9992260-9992279 | Msa0908930:CDS | 60.0% | |
| ACGTGGGCCGTGGTATCTGA+CGG | - | chr6_2:9992270-9992289 | Msa0908930:CDS | 60.0% | |
| AACGTACAGCGAGCCGTAGC+GGG | + | chr6_2:9992311-9992330 | None:intergenic | 60.0% | |
| GAACGTACAGCGAGCCGTAG+CGG | + | chr6_2:9992312-9992331 | None:intergenic | 60.0% | |
| GTATACCGGTGCACCAACCG+AGG | + | chr6_2:9991690-9991709 | None:intergenic | 60.0% | |
| ACCGGTATACCCCCTCCATC+AGG | - | chr6_2:9991700-9991719 | Msa0908930:CDS | 60.0% | |
| ! | CCCTGATGGAGGGGGTATAC+CGG | + | chr6_2:9991704-9991723 | None:intergenic | 60.0% |
| CCGGTATACCCCCTCCATCA+GGG | - | chr6_2:9991701-9991720 | Msa0908930:CDS | 60.0% | |
| CGGTATACCCCCTCCATCAG+GGG | - | chr6_2:9991702-9991721 | Msa0908930:CDS | 60.0% | |
| GCACAATCCCCTGATGGAGG+GGG | + | chr6_2:9991712-9991731 | None:intergenic | 60.0% | |
| CGCACAATCCCCTGATGGAG+GGG | + | chr6_2:9991713-9991732 | None:intergenic | 60.0% | |
| CCGCACAATCCCCTGATGGA+GGG | + | chr6_2:9991714-9991733 | None:intergenic | 60.0% | |
| CCCTCCATCAGGGGATTGTG+CGG | - | chr6_2:9991711-9991730 | Msa0908930:CDS | 60.0% | |
| CCTCCATCAGGGGATTGTGC+GGG | - | chr6_2:9991712-9991731 | Msa0908930:CDS | 60.0% | |
| GTTCCCGCACAATCCCCTGA+TGG | + | chr6_2:9991718-9991737 | None:intergenic | 60.0% | |
| AGCCGCGAGAGTTACAGGAG+AGG | - | chr6_2:9992047-9992066 | Msa0908930:intron | 60.0% | |
| CAGGAGAGGAGCGAAGTGAG+AGG | - | chr6_2:9992061-9992080 | Msa0908930:intron | 60.0% | |
| GAGAGGAGCGAAGTGAGAGG+CGG | - | chr6_2:9992064-9992083 | Msa0908930:intron | 60.0% | |
| TAGAGCTTGAACGTGGGCCG+TGG | - | chr6_2:9992260-9992279 | Msa0908930:CDS | 60.0% | |
| ACGTGGGCCGTGGTATCTGA+CGG | - | chr6_2:9992270-9992289 | Msa0908930:CDS | 60.0% | |
| AACGTACAGCGAGCCGTAGC+GGG | + | chr6_2:9992311-9992330 | None:intergenic | 60.0% | |
| GAACGTACAGCGAGCCGTAG+CGG | + | chr6_2:9992312-9992331 | None:intergenic | 60.0% | |
| CCCGCACAATCCCCTGATGG+AGG | + | chr6_2:9991715-9991734 | None:intergenic | 65.0% | |
| CGTGGGCCGTGGTATCTGAC+GGG | - | chr6_2:9992271-9992290 | Msa0908930:CDS | 65.0% | |
| ! | CATTGGCCTCCCTCCCGCTA+CGG | - | chr6_2:9992295-9992314 | Msa0908930:CDS | 65.0% |
| ! | TACAGCGAGCCGTAGCGGGA+GGG | + | chr6_2:9992307-9992326 | None:intergenic | 65.0% |
| CCCGCACAATCCCCTGATGG+AGG | + | chr6_2:9991715-9991734 | None:intergenic | 65.0% | |
| CGTGGGCCGTGGTATCTGAC+GGG | - | chr6_2:9992271-9992290 | Msa0908930:CDS | 65.0% | |
| ! | CATTGGCCTCCCTCCCGCTA+CGG | - | chr6_2:9992295-9992314 | Msa0908930:CDS | 65.0% |
| ! | TACAGCGAGCCGTAGCGGGA+GGG | + | chr6_2:9992307-9992326 | None:intergenic | 65.0% |
| ! | GTACAGCGAGCCGTAGCGGG+AGG | + | chr6_2:9992308-9992327 | None:intergenic | 70.0% |
| ! | GTACAGCGAGCCGTAGCGGG+AGG | + | chr6_2:9992308-9992327 | None:intergenic | 70.0% |
| ! | AGCGAGCCGTAGCGGGAGGG+AGG | + | chr6_2:9992304-9992323 | None:intergenic | 75.0% |
| ! | AGCGAGCCGTAGCGGGAGGG+AGG | + | chr6_2:9992304-9992323 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 9991488 | 9992375 | 9991488 | ID=Msa0908930;Name=Msa0908930 |
| chr6_2 | mRNA | 9991488 | 9992375 | 9991488 | ID=Msa0908930-mRNA-1;Parent=Msa0908930;Name=Msa0908930-mRNA-1;_AED=0.41;_eAED=0.41;_QI=49|0|0|1|1|1|2|0|162 |
| chr6_2 | exon | 9992192 | 9992375 | 9992192 | ID=Msa0908930-mRNA-1:exon:2526;Parent=Msa0908930-mRNA-1 |
| chr6_2 | exon | 9991488 | 9991838 | 9991488 | ID=Msa0908930-mRNA-1:exon:2525;Parent=Msa0908930-mRNA-1 |
| chr6_2 | five_prime_UTR | 9992327 | 9992375 | 9992327 | ID=Msa0908930-mRNA-1:five_prime_utr;Parent=Msa0908930-mRNA-1 |
| chr6_2 | CDS | 9992192 | 9992326 | 9992192 | ID=Msa0908930-mRNA-1:cds;Parent=Msa0908930-mRNA-1 |
| chr6_2 | CDS | 9991488 | 9991838 | 9991488 | ID=Msa0908930-mRNA-1:cds;Parent=Msa0908930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
