Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983320 | KEH16849.1 | 79.679 | 187 | 24 | 3 | 1 | 175 | 1 | 185 | 2.59e-96 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983320 | A0A072TH22 | 79.679 | 187 | 24 | 3 | 1 | 175 | 1 | 185 | 1.24e-96 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026430 | Msa0983320 | -0.808499 | 3.005704e-50 | -8.615850e-47 |
| Msa0026910 | Msa0983320 | -0.807514 | 4.871050e-50 | -8.615850e-47 |
| Msa0043980 | Msa0983320 | -0.810873 | 9.282434e-51 | -8.615850e-47 |
| Msa0051630 | Msa0983320 | -0.803100 | 4.096341e-49 | -8.615850e-47 |
| Msa0051750 | Msa0983320 | -0.810915 | 9.089230e-51 | -8.615850e-47 |
| Msa0069500 | Msa0983320 | 0.811350 | 7.314290e-51 | -8.615850e-47 |
| Msa0074750 | Msa0983320 | -0.806910 | 6.539751e-50 | -8.615850e-47 |
| Msa0692840 | Msa0983320 | -0.809942 | 1.474316e-50 | -8.615850e-47 |
| Msa0697990 | Msa0983320 | 0.815351 | 9.666935e-52 | -8.615850e-47 |
| Msa0709160 | Msa0983320 | -0.806700 | 7.242262e-50 | -8.615850e-47 |
| Msa0709500 | Msa0983320 | -0.826812 | 2.208580e-54 | -8.615850e-47 |
| Msa0711780 | Msa0983320 | -0.805808 | 1.116177e-49 | -8.615850e-47 |
| Msa0721280 | Msa0983320 | -0.806027 | 1.003811e-49 | -8.615850e-47 |
| Msa0790660 | Msa0983320 | 0.802683 | 4.994899e-49 | -8.615850e-47 |
| Msa0790850 | Msa0983320 | -0.817554 | 3.105308e-52 | -8.615850e-47 |
| Msa0794670 | Msa0983320 | -0.803083 | 4.129151e-49 | -8.615850e-47 |
| Msa0827280 | Msa0983320 | -0.803451 | 3.464464e-49 | -8.615850e-47 |
| Msa0157100 | Msa0983320 | -0.815665 | 8.230559e-52 | -8.615850e-47 |
| Msa0173070 | Msa0983320 | -0.839199 | 1.827277e-57 | -8.615850e-47 |
| Msa0380300 | Msa0983320 | -0.803606 | 3.217453e-49 | -8.615850e-47 |
| Msa0390730 | Msa0983320 | -0.804922 | 1.711551e-49 | -8.615850e-47 |
| Msa0983170 | Msa0983320 | 0.834830 | 2.389254e-56 | -8.615850e-47 |
| Msa0983180 | Msa0983320 | 0.884507 | 1.808198e-71 | -8.615850e-47 |
| Msa0983190 | Msa0983320 | 0.881263 | 2.776008e-70 | -8.615850e-47 |
| Msa0983210 | Msa0983320 | 0.852162 | 5.532093e-61 | -8.615850e-47 |
| Msa0983220 | Msa0983320 | 0.819396 | 1.187560e-52 | -8.615850e-47 |
| Msa0983260 | Msa0983320 | 0.851100 | 1.105373e-60 | -8.615850e-47 |
| Msa0983300 | Msa0983320 | 0.839715 | 1.342209e-57 | -8.615850e-47 |
| Msa0983310 | Msa0983320 | 0.838828 | 2.281005e-57 | -8.615850e-47 |
| Msa0983320 | Msa0983350 | 0.834476 | 2.931578e-56 | -8.615850e-47 |
| Msa0983320 | Msa0983460 | 0.867860 | 1.001921e-65 | -8.615850e-47 |
| Msa0983320 | Msa0983490 | 0.835455 | 1.661293e-56 | -8.615850e-47 |
| Msa0983320 | Msa0983500 | 0.866377 | 2.981853e-65 | -8.615850e-47 |
| Msa0983320 | Msa0983520 | 0.870070 | 1.925656e-66 | -8.615850e-47 |
| Msa0983320 | Msa0983530 | 0.879511 | 1.174442e-69 | -8.615850e-47 |
| Msa0983320 | Msa0983540 | 0.859453 | 4.093299e-63 | -8.615850e-47 |
| Msa0983320 | Msa1012430 | -0.804666 | 1.936272e-49 | -8.615850e-47 |
| Msa0983320 | Msa1023920 | -0.804880 | 1.746816e-49 | -8.615850e-47 |
| Msa0983320 | Msa1081930 | -0.801067 | 1.072610e-48 | -8.615850e-47 |
| Msa0983320 | Msa1093530 | -0.803823 | 2.900079e-49 | -8.615850e-47 |
| Msa0983320 | Msa1100720 | -0.812727 | 3.666136e-51 | -8.615850e-47 |
| Msa0983320 | Msa1107900 | -0.804580 | 2.018226e-49 | -8.615850e-47 |
| Msa0983320 | Msa1109680 | -0.808484 | 3.027522e-50 | -8.615850e-47 |
| Msa0983320 | Msa1135470 | -0.805279 | 1.441155e-49 | -8.615850e-47 |
| Msa0983320 | Msa1171360 | -0.826320 | 2.894438e-54 | -8.615850e-47 |
| Msa0983320 | Msa1193290 | -0.803166 | 3.969392e-49 | -8.615850e-47 |
| Msa0983320 | Msa1218600 | -0.800481 | 1.412487e-48 | -8.615850e-47 |
| Msa0983320 | Msa1228620 | 0.863857 | 1.844454e-64 | -8.615850e-47 |
| Msa0983320 | Msa1305710 | -0.815163 | 1.064047e-51 | -8.615850e-47 |
| Msa0983320 | Msa1342900 | -0.806502 | 7.972994e-50 | -8.615850e-47 |
| Msa0983320 | Msa1357890 | -0.808741 | 2.668209e-50 | -8.615850e-47 |
| Msa0983320 | Msa1391970 | 0.837781 | 4.243911e-57 | -8.615850e-47 |
| Msa0983320 | Msa1392010 | 0.984646 | 3.614659e-161 | -8.615850e-47 |
| Msa0983320 | Msa1392020 | 0.831659 | 1.472587e-55 | -8.615850e-47 |
| Msa0983320 | Msa1392030 | 0.837911 | 3.930615e-57 | -8.615850e-47 |
| Msa0983320 | Msa1392120 | 0.860241 | 2.369975e-63 | -8.615850e-47 |
| Msa0983320 | Msa1392160 | 0.862063 | 6.604513e-64 | -8.615850e-47 |
| Msa0983320 | Msa1398090 | -0.808542 | 2.942131e-50 | -8.615850e-47 |
| Msa0983320 | Msa1406430 | -0.803102 | 4.091326e-49 | -8.615850e-47 |
| Msa0983320 | Msa1417200 | -0.803731 | 3.031282e-49 | -8.615850e-47 |
| Msa0983320 | Msa1458810 | -0.808911 | 2.454594e-50 | -8.615850e-47 |
| Msa0983320 | Msa1466540 | -0.803568 | 3.275707e-49 | -8.615850e-47 |
| Msa0271530 | Msa0983320 | -0.823068 | 1.689773e-53 | -8.615850e-47 |
| Msa0287410 | Msa0983320 | -0.802172 | 6.363713e-49 | -8.615850e-47 |
| Msa0300120 | Msa0983320 | -0.810551 | 1.089572e-50 | -8.615850e-47 |
| Msa0311700 | Msa0983320 | -0.808174 | 3.524987e-50 | -8.615850e-47 |
| Msa0326110 | Msa0983320 | -0.805740 | 1.153860e-49 | -8.615850e-47 |
| Msa0485120 | Msa0983320 | -0.803182 | 3.939179e-49 | -8.615850e-47 |
| Msa0565620 | Msa0983320 | 0.809311 | 2.014556e-50 | -8.615850e-47 |
| Msa0860030 | Msa0983320 | 0.806791 | 6.927699e-50 | -8.615850e-47 |
| Msa0876580 | Msa0983320 | -0.803515 | 3.360854e-49 | -8.615850e-47 |
| Msa0908830 | Msa0983320 | 0.842712 | 2.186911e-58 | -8.615850e-47 |
| Msa0908840 | Msa0983320 | 0.884407 | 1.968691e-71 | -8.615850e-47 |
| Msa0908850 | Msa0983320 | 0.870405 | 1.496401e-66 | -8.615850e-47 |
| Msa0908870 | Msa0983320 | 0.849603 | 2.908145e-60 | -8.615850e-47 |
| Msa0908920 | Msa0983320 | 0.861460 | 1.010290e-63 | -8.615850e-47 |
| Msa0908930 | Msa0983320 | 0.843974 | 1.007242e-58 | -8.615850e-47 |
| Msa0920060 | Msa0983320 | 0.813150 | 2.961355e-51 | -8.615850e-47 |
| Msa0932570 | Msa0983320 | -0.805820 | 1.109734e-49 | -8.615850e-47 |
| Msa0944900 | Msa0983320 | 0.877266 | 7.211376e-69 | -8.615850e-47 |
| Msa0944920 | Msa0983320 | 0.876843 | 1.011395e-68 | -8.615850e-47 |
| Msa0944930 | Msa0983320 | 0.885193 | 1.003775e-71 | -8.615850e-47 |
| Msa0944940 | Msa0983320 | 0.849711 | 2.713292e-60 | -8.615850e-47 |
| Msa0944990 | Msa0983320 | 0.852880 | 3.452278e-61 | -8.615850e-47 |
| Msa0970530 | Msa0983320 | -0.800784 | 1.225198e-48 | -8.615850e-47 |
| Msa0970600 | Msa0983320 | -0.814908 | 1.212290e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGCTGTGGGTCAGTTTC+GGG | 0.191312 | 6_4:+26440051 | Msa0983320:CDS |
| TGTGGGTCAGTTTCGGGGCG+GGG | 0.313334 | 6_4:+26440057 | Msa0983320:CDS |
| CTTTCTGTGTGGGACGATGC+CGG | 0.316270 | 6_4:-26439606 | None:intergenic |
| GCTGTGCTGTGGGTCAGTTT+CGG | 0.325201 | 6_4:+26440050 | Msa0983320:CDS |
| GTGGGTCAGTTTCGGGGCGG+GGG | 0.330602 | 6_4:+26440058 | Msa0983320:CDS |
| CTGTGGGTCAGTTTCGGGGC+GGG | 0.351980 | 6_4:+26440056 | Msa0983320:CDS |
| CGCCCATTCGCTTCGCGCGC+GGG | 0.358241 | 6_4:-26440028 | None:intergenic |
| TGACTTCGGTTCGCCAGTTC+AGG | 0.360274 | 6_4:-26439693 | None:intergenic |
| TTCCCGCGCGCGAAGCGAAT+GGG | 0.362487 | 6_4:+26440026 | Msa0983320:CDS |
| TTTGCGCTGCGCGTTCCCGC+TGG | 0.368645 | 6_4:-26439756 | None:intergenic |
| TTTCTGTGTGGGACGATGCC+GGG | 0.378127 | 6_4:-26439605 | None:intergenic |
| CGCGGGAAGGCTACGAAGTT+CGG | 0.381304 | 6_4:-26440011 | None:intergenic |
| CTCGGTCCCCGATGGCCTGC+GGG | 0.387846 | 6_4:-26439805 | None:intergenic |
| CTTCCCGCGCGCGAAGCGAA+TGG | 0.392844 | 6_4:+26440025 | Msa0983320:CDS |
| CCGTCGCCTACTTACCGTTT+AGG | 0.396921 | 6_4:+26439915 | Msa0983320:CDS |
| ACGAAGTTCCTTCCCTTAGC+TGG | 0.398339 | 6_4:-26439953 | None:intergenic |
| TGGCGAACCGAAGTCACTTT+CGG | 0.415405 | 6_4:+26439700 | Msa0983320:CDS |
| GCGCCCATTCGCTTCGCGCG+CGG | 0.425723 | 6_4:-26440029 | None:intergenic |
| AGCGAATGGGCGCTGTGCTG+TGG | 0.429564 | 6_4:+26440039 | Msa0983320:CDS |
| CATTCGCTTCGCGCGCGGGA+AGG | 0.433191 | 6_4:-26440024 | None:intergenic |
| TGGGTCAGTTTCGGGGCGGG+GGG | 0.448710 | 6_4:+26440059 | Msa0983320:CDS |
| GCTGCGCGTTCCCGCTGGAC+TGG | 0.454225 | 6_4:-26439751 | None:intergenic |
| AAGAGAACTGAGCTGGCGCT+TGG | 0.459565 | 6_4:-26439488 | None:intergenic |
| CGTGTTAGCTGTAGGAAGTA+TGG | 0.472037 | 6_4:-26439725 | None:intergenic |
| GCGAGGAGTTGAGCCTGAAC+TGG | 0.476860 | 6_4:+26439680 | Msa0983320:intron |
| GGGACGATGCCGGGGAGAGA+AGG | 0.483121 | 6_4:-26439596 | None:intergenic |
| TCTCGCTGGTGCCACCTAAA+CGG | 0.485900 | 6_4:-26439929 | None:intergenic |
| TTCCCTTAGCTGGATCTCGC+TGG | 0.493334 | 6_4:-26439943 | None:intergenic |
| AGAGAACTGAGCTGGCGCTT+GGG | 0.494487 | 6_4:-26439487 | None:intergenic |
| GGACGATGCCGGGGAGAGAA+GGG | 0.500282 | 6_4:-26439595 | None:intergenic |
| GGCGACGGATGTGTGACGTT+TGG | 0.502967 | 6_4:-26439900 | None:intergenic |
| GACGCATTCCCTTCTCTCCC+CGG | 0.520898 | 6_4:+26439587 | Msa0983320:CDS |
| ATAAATCGATATGTATCTGA+TGG | 0.523902 | 6_4:+26439442 | None:intergenic |
| CTCCATCCATGACAGTGCAT+TGG | 0.532650 | 6_4:-26439521 | None:intergenic |
| GTCCAATGCACTGTCATGGA+TGG | 0.536192 | 6_4:+26439519 | Msa0983320:CDS |
| GCGAATGGGCGCTGTGCTGT+GGG | 0.539770 | 6_4:+26440040 | Msa0983320:CDS |
| AGCTCAGTTCTCTTATCCAT+CGG | 0.540408 | 6_4:+26439497 | Msa0983320:CDS |
| CAATGCACTGTCATGGATGG+AGG | 0.543873 | 6_4:+26439522 | Msa0983320:CDS |
| TTCATGAGACCGCGGCGGAG+TGG | 0.545398 | 6_4:-26439988 | None:intergenic |
| ACTCGGTCCCCGATGGCCTG+CGG | 0.553396 | 6_4:-26439806 | None:intergenic |
| ATCGGTCCAATGCACTGTCA+TGG | 0.554798 | 6_4:+26439515 | Msa0983320:CDS |
| GCTGTGGGTCAGTTTCGGGG+CGG | 0.555599 | 6_4:+26440055 | Msa0983320:CDS |
| GATGGATAAGAGAACTGAGC+TGG | 0.556532 | 6_4:-26439495 | None:intergenic |
| ATGACAGTGCATTGGACCGA+TGG | 0.558632 | 6_4:-26439513 | None:intergenic |
| TTCTGTGTGGGACGATGCCG+GGG | 0.559319 | 6_4:-26439604 | None:intergenic |
| CCTTACCACTCGGTCCCCGA+TGG | 0.572919 | 6_4:-26439813 | None:intergenic |
| TCGGTCCCCGATGGCCTGCG+GGG | 0.576019 | 6_4:-26439804 | None:intergenic |
| TATGGTTCCGAAAGTGACTT+CGG | 0.579844 | 6_4:-26439707 | None:intergenic |
| ATCCAAATGAATCATTCTTG+TGG | 0.586529 | 6_4:-26440092 | None:intergenic |
| CGGTCCCCGATGGCCTGCGG+GGG | 0.603794 | 6_4:-26439803 | None:intergenic |
| TAACACGTGTCCAGTCCAGC+GGG | 0.606235 | 6_4:+26439741 | Msa0983320:CDS |
| GTGCCACCTAAACGGTAAGT+AGG | 0.609035 | 6_4:-26439921 | None:intergenic |
| TGTGCTGTGGGTCAGTTTCG+GGG | 0.610535 | 6_4:+26440052 | Msa0983320:CDS |
| AGCGAGATCCAGCTAAGGGA+AGG | 0.613371 | 6_4:+26439945 | Msa0983320:CDS |
| GCACCAGCGAGATCCAGCTA+AGG | 0.613771 | 6_4:+26439940 | Msa0983320:CDS |
| CACCAGCGAGATCCAGCTAA+GGG | 0.620544 | 6_4:+26439941 | Msa0983320:CDS |
| AATGCACTGTCATGGATGGA+GGG | 0.629806 | 6_4:+26439523 | Msa0983320:CDS |
| ACTGGACACGTGTTAGCTGT+AGG | 0.636729 | 6_4:-26439733 | None:intergenic |
| TCGCCTACTTACCGTTTAGG+TGG | 0.640918 | 6_4:+26439918 | Msa0983320:CDS |
| GCGGCTGCTCCACTCCGCCG+CGG | 0.642559 | 6_4:+26439979 | Msa0983320:CDS |
| GGAGAGAAGGGAATGCGTCG+AGG | 0.646607 | 6_4:-26439583 | None:intergenic |
| GAGAAGGGAATGCGTCGAGG+CGG | 0.663253 | 6_4:-26439580 | None:intergenic |
| GCAGGCCATCGGGGACCGAG+TGG | 0.669923 | 6_4:+26439808 | Msa0983320:CDS |
| CTAACACGTGTCCAGTCCAG+CGG | 0.686803 | 6_4:+26439740 | Msa0983320:CDS |
| AGGGAAGGAACTTCGTGTCG+CGG | 0.689775 | 6_4:+26439960 | Msa0983320:CDS |
| CCTAAACGGTAAGTAGGCGA+CGG | 0.699145 | 6_4:-26439915 | None:intergenic |
| TTCGGTTCATGAGACCGCGG+CGG | 0.744018 | 6_4:-26439993 | None:intergenic |
| AAGTTCGGTTCATGAGACCG+CGG | 0.751147 | 6_4:-26439996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AGCTCAGTTCTCTTATCCAT+CGG | + | chr6_4:26439497-26439516 | Msa0983320:CDS | 40.0% | |
| TATGGTTCCGAAAGTGACTT+CGG | - | chr6_4:26439710-26439729 | None:intergenic | 40.0% | |
| GGATCACTCATTCTTCCATT+GGG | + | chr6_4:26439855-26439874 | Msa0983320:intron | 40.0% | |
| GATCACTCATTCTTCCATTG+GGG | + | chr6_4:26439856-26439875 | Msa0983320:intron | 40.0% | |
| GATGGATAAGAGAACTGAGC+TGG | - | chr6_4:26439498-26439517 | None:intergenic | 45.0% | |
| AATGCACTGTCATGGATGGA+GGG | + | chr6_4:26439523-26439542 | Msa0983320:CDS | 45.0% | |
| TGCGCTCTTTCTTTCTGTGT+GGG | - | chr6_4:26439619-26439638 | None:intergenic | 45.0% | |
| AACTCCTCGCTTTACGTTAG+CGG | - | chr6_4:26439670-26439689 | None:intergenic | 45.0% | |
| CGTGTTAGCTGTAGGAAGTA+TGG | - | chr6_4:26439728-26439747 | None:intergenic | 45.0% | |
| CGGATCACTCATTCTTCCAT+TGG | + | chr6_4:26439854-26439873 | Msa0983320:intron | 45.0% | |
| ATGACAGTGCATTGGACCGA+TGG | - | chr6_4:26439516-26439535 | None:intergenic | 50.0% | |
| ATCGGTCCAATGCACTGTCA+TGG | + | chr6_4:26439515-26439534 | Msa0983320:CDS | 50.0% | |
| GTCCAATGCACTGTCATGGA+TGG | + | chr6_4:26439519-26439538 | Msa0983320:CDS | 50.0% | |
| CTCCATCCATGACAGTGCAT+TGG | - | chr6_4:26439524-26439543 | None:intergenic | 50.0% | |
| CAATGCACTGTCATGGATGG+AGG | + | chr6_4:26439522-26439541 | Msa0983320:CDS | 50.0% | |
| CTGCGCTCTTTCTTTCTGTG+TGG | - | chr6_4:26439620-26439639 | None:intergenic | 50.0% | |
| ! | TGGCGAACCGAAGTCACTTT+CGG | + | chr6_4:26439700-26439719 | Msa0983320:CDS | 50.0% |
| ACTGGACACGTGTTAGCTGT+AGG | - | chr6_4:26439736-26439755 | None:intergenic | 50.0% | |
| CTCATTCTTCCATTGGGGAC+AGG | + | chr6_4:26439861-26439880 | Msa0983320:intron | 50.0% | |
| CCTAAACGGTAAGTAGGCGA+CGG | - | chr6_4:26439918-26439937 | None:intergenic | 50.0% | |
| TCGCCTACTTACCGTTTAGG+TGG | + | chr6_4:26439918-26439937 | Msa0983320:CDS | 50.0% | |
| GTGCCACCTAAACGGTAAGT+AGG | - | chr6_4:26439924-26439943 | None:intergenic | 50.0% | |
| ACGAAGTTCCTTCCCTTAGC+TGG | - | chr6_4:26439956-26439975 | None:intergenic | 50.0% | |
| AAGTTCGGTTCATGAGACCG+CGG | - | chr6_4:26439999-26440018 | None:intergenic | 50.0% | |
| AGAGAACTGAGCTGGCGCTT+GGG | - | chr6_4:26439490-26439509 | None:intergenic | 55.0% | |
| AAGAGAACTGAGCTGGCGCT+TGG | - | chr6_4:26439491-26439510 | None:intergenic | 55.0% | |
| TTTCTGTGTGGGACGATGCC+GGG | - | chr6_4:26439608-26439627 | None:intergenic | 55.0% | |
| CTTTCTGTGTGGGACGATGC+CGG | - | chr6_4:26439609-26439628 | None:intergenic | 55.0% | |
| ! | AAAGAAAGAGCGCAGAGCCC+CGG | + | chr6_4:26439625-26439644 | Msa0983320:intron | 55.0% |
| AGCGGACCTACACTACAGGT+CGG | - | chr6_4:26439652-26439671 | None:intergenic | 55.0% | |
| ! | CGTTAGCGGACCTACACTAC+AGG | - | chr6_4:26439656-26439675 | None:intergenic | 55.0% |
| AGGTCCGCTAACGTAAAGCG+AGG | + | chr6_4:26439663-26439682 | Msa0983320:intron | 55.0% | |
| ! | TGACTTCGGTTCGCCAGTTC+AGG | - | chr6_4:26439696-26439715 | None:intergenic | 55.0% |
| CTAACACGTGTCCAGTCCAG+CGG | + | chr6_4:26439740-26439759 | Msa0983320:CDS | 55.0% | |
| TAACACGTGTCCAGTCCAGC+GGG | + | chr6_4:26439741-26439760 | Msa0983320:CDS | 55.0% | |
| ! | CGGATCATGGCCTTACCACT+CGG | - | chr6_4:26439826-26439845 | None:intergenic | 55.0% |
| TGGTAAGGCCATGATCCGCA+GGG | + | chr6_4:26439828-26439847 | Msa0983320:intron | 55.0% | |
| ATGAGTGATCCGTTCCCCTG+CGG | - | chr6_4:26439846-26439865 | None:intergenic | 55.0% | |
| CCGTCGCCTACTTACCGTTT+AGG | + | chr6_4:26439915-26439934 | Msa0983320:CDS | 55.0% | |
| !! | TCTCGCTGGTGCCACCTAAA+CGG | - | chr6_4:26439932-26439951 | None:intergenic | 55.0% |
| CACCAGCGAGATCCAGCTAA+GGG | + | chr6_4:26439941-26439960 | Msa0983320:CDS | 55.0% | |
| TTCCCTTAGCTGGATCTCGC+TGG | - | chr6_4:26439946-26439965 | None:intergenic | 55.0% | |
| AGCGAGATCCAGCTAAGGGA+AGG | + | chr6_4:26439945-26439964 | Msa0983320:CDS | 55.0% | |
| AGGGAAGGAACTTCGTGTCG+CGG | + | chr6_4:26439960-26439979 | Msa0983320:CDS | 55.0% | |
| GCTGTGCTGTGGGTCAGTTT+CGG | + | chr6_4:26440050-26440069 | Msa0983320:CDS | 55.0% | |
| CTGTGCTGTGGGTCAGTTTC+GGG | + | chr6_4:26440051-26440070 | Msa0983320:CDS | 55.0% | |
| TGTGCTGTGGGTCAGTTTCG+GGG | + | chr6_4:26440052-26440071 | Msa0983320:CDS | 55.0% | |
| GAGAAGGGAATGCGTCGAGG+CGG | - | chr6_4:26439583-26439602 | None:intergenic | 60.0% | |
| GGAGAGAAGGGAATGCGTCG+AGG | - | chr6_4:26439586-26439605 | None:intergenic | 60.0% | |
| GACGCATTCCCTTCTCTCCC+CGG | + | chr6_4:26439587-26439606 | Msa0983320:CDS | 60.0% | |
| TTCTGTGTGGGACGATGCCG+GGG | - | chr6_4:26439607-26439626 | None:intergenic | 60.0% | |
| ACCTACACTACAGGTCGGGC+CGG | - | chr6_4:26439647-26439666 | None:intergenic | 60.0% | |
| GCGGACCTACACTACAGGTC+GGG | - | chr6_4:26439651-26439670 | None:intergenic | 60.0% | |
| GCGAGGAGTTGAGCCTGAAC+TGG | + | chr6_4:26439680-26439699 | Msa0983320:intron | 60.0% | |
| TGCTATACCGAATCCCCCGC+AGG | + | chr6_4:26439790-26439809 | Msa0983320:CDS | 60.0% | |
| GTGGTAAGGCCATGATCCGC+AGG | + | chr6_4:26439827-26439846 | Msa0983320:intron | 60.0% | |
| GGTAAGGCCATGATCCGCAG+GGG | + | chr6_4:26439829-26439848 | Msa0983320:intron | 60.0% | |
| ATCCGTTCCCCTGCGGATCA+TGG | - | chr6_4:26439839-26439858 | None:intergenic | 60.0% | |
| GTTCGTGCACCTGTCCCCAA+TGG | - | chr6_4:26439873-26439892 | None:intergenic | 60.0% | |
| GGCGACGGATGTGTGACGTT+TGG | - | chr6_4:26439903-26439922 | None:intergenic | 60.0% | |
| GCACCAGCGAGATCCAGCTA+AGG | + | chr6_4:26439940-26439959 | Msa0983320:CDS | 60.0% | |
| TTCGGTTCATGAGACCGCGG+CGG | - | chr6_4:26439996-26440015 | None:intergenic | 60.0% | |
| CGCGGGAAGGCTACGAAGTT+CGG | - | chr6_4:26440014-26440033 | None:intergenic | 60.0% | |
| GGACGATGCCGGGGAGAGAA+GGG | - | chr6_4:26439598-26439617 | None:intergenic | 65.0% | |
| CTACACTACAGGTCGGGCCG+GGG | - | chr6_4:26439645-26439664 | None:intergenic | 65.0% | |
| CCTACACTACAGGTCGGGCC+GGG | - | chr6_4:26439646-26439665 | None:intergenic | 65.0% | |
| CCTTACCACTCGGTCCCCGA+TGG | - | chr6_4:26439816-26439835 | None:intergenic | 65.0% | |
| CCATCGGGGACCGAGTGGTA+AGG | + | chr6_4:26439813-26439832 | Msa0983320:intron | 65.0% | |
| GGCCATGATCCGCAGGGGAA+CGG | + | chr6_4:26439834-26439853 | Msa0983320:intron | 65.0% | |
| TTCATGAGACCGCGGCGGAG+TGG | - | chr6_4:26439991-26440010 | None:intergenic | 65.0% | |
| TTCCCGCGCGCGAAGCGAAT+GGG | + | chr6_4:26440026-26440045 | Msa0983320:CDS | 65.0% | |
| ! | AGCGAATGGGCGCTGTGCTG+TGG | + | chr6_4:26440039-26440058 | Msa0983320:CDS | 65.0% |
| ! | GCGAATGGGCGCTGTGCTGT+GGG | + | chr6_4:26440040-26440059 | Msa0983320:CDS | 65.0% |
| GCTGTGGGTCAGTTTCGGGG+CGG | + | chr6_4:26440055-26440074 | Msa0983320:CDS | 65.0% | |
| CTGTGGGTCAGTTTCGGGGC+GGG | + | chr6_4:26440056-26440075 | Msa0983320:CDS | 65.0% | |
| TGTGGGTCAGTTTCGGGGCG+GGG | + | chr6_4:26440057-26440076 | Msa0983320:CDS | 65.0% | |
| GGGACGATGCCGGGGAGAGA+AGG | - | chr6_4:26439599-26439618 | None:intergenic | 70.0% | |
| CCCGGCCCGACCTGTAGTGT+AGG | + | chr6_4:26439643-26439662 | Msa0983320:intron | 70.0% | |
| TTTGCGCTGCGCGTTCCCGC+TGG | - | chr6_4:26439759-26439778 | None:intergenic | 70.0% | |
| CCGATGGCCTGCGGGGGATT+CGG | - | chr6_4:26439800-26439819 | None:intergenic | 70.0% | |
| CCGAATCCCCCGCAGGCCAT+CGG | + | chr6_4:26439797-26439816 | Msa0983320:CDS | 70.0% | |
| CGAATCCCCCGCAGGCCATC+GGG | + | chr6_4:26439798-26439817 | Msa0983320:CDS | 70.0% | |
| GAATCCCCCGCAGGCCATCG+GGG | + | chr6_4:26439799-26439818 | Msa0983320:CDS | 70.0% | |
| ACTCGGTCCCCGATGGCCTG+CGG | - | chr6_4:26439809-26439828 | None:intergenic | 70.0% | |
| CATTCGCTTCGCGCGCGGGA+AGG | - | chr6_4:26440027-26440046 | None:intergenic | 70.0% | |
| CTTCCCGCGCGCGAAGCGAA+TGG | + | chr6_4:26440025-26440044 | Msa0983320:CDS | 70.0% | |
| GTGGGTCAGTTTCGGGGCGG+GGG | + | chr6_4:26440058-26440077 | Msa0983320:CDS | 70.0% | |
| TGGGTCAGTTTCGGGGCGGG+GGG | + | chr6_4:26440059-26440078 | Msa0983320:CDS | 70.0% | |
| GCTGCGCGTTCCCGCTGGAC+TGG | - | chr6_4:26439754-26439773 | None:intergenic | 75.0% | |
| TCGGTCCCCGATGGCCTGCG+GGG | - | chr6_4:26439807-26439826 | None:intergenic | 75.0% | |
| CTCGGTCCCCGATGGCCTGC+GGG | - | chr6_4:26439808-26439827 | None:intergenic | 75.0% | |
| GCAGGCCATCGGGGACCGAG+TGG | + | chr6_4:26439808-26439827 | Msa0983320:CDS | 75.0% | |
| CGCCCATTCGCTTCGCGCGC+GGG | - | chr6_4:26440031-26440050 | None:intergenic | 75.0% | |
| GCGCCCATTCGCTTCGCGCG+CGG | - | chr6_4:26440032-26440051 | None:intergenic | 75.0% | |
| ! | CGGTCCCCGATGGCCTGCGG+GGG | - | chr6_4:26439806-26439825 | None:intergenic | 80.0% |
| ! | GCGGCTGCTCCACTCCGCCG+CGG | + | chr6_4:26439979-26439998 | Msa0983320:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26439452 | 26440103 | 26439452 | ID=Msa0983320;Name=Msa0983320 |
| chr6_4 | mRNA | 26439452 | 26440103 | 26439452 | ID=Msa0983320-mRNA-1;Parent=Msa0983320;Name=Msa0983320-mRNA-1;_AED=0.46;_eAED=0.50;_QI=0|0|0|1|0|0.33|3|0|175 |
| chr6_4 | exon | 26439452 | 26439613 | 26439452 | ID=Msa0983320-mRNA-1:exon:7440;Parent=Msa0983320-mRNA-1 |
| chr6_4 | exon | 26439685 | 26439829 | 26439685 | ID=Msa0983320-mRNA-1:exon:7441;Parent=Msa0983320-mRNA-1 |
| chr6_4 | exon | 26439883 | 26440103 | 26439883 | ID=Msa0983320-mRNA-1:exon:7442;Parent=Msa0983320-mRNA-1 |
| chr6_4 | CDS | 26439452 | 26439613 | 26439452 | ID=Msa0983320-mRNA-1:cds;Parent=Msa0983320-mRNA-1 |
| chr6_4 | CDS | 26439685 | 26439829 | 26439685 | ID=Msa0983320-mRNA-1:cds;Parent=Msa0983320-mRNA-1 |
| chr6_4 | CDS | 26439883 | 26440103 | 26439883 | ID=Msa0983320-mRNA-1:cds;Parent=Msa0983320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
