Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944990 | KEH16858.1 | 93.651 | 126 | 8 | 0 | 37 | 162 | 15 | 140 | 2.69e-79 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0944990 | -0.801829 | 7.484144e-49 | -8.615850e-47 |
| Msa0020410 | Msa0944990 | -0.804288 | 2.321783e-49 | -8.615850e-47 |
| Msa0037880 | Msa0944990 | -0.805689 | 1.182506e-49 | -8.615850e-47 |
| Msa0069330 | Msa0944990 | -0.807834 | 4.164140e-50 | -8.615850e-47 |
| Msa0069500 | Msa0944990 | 0.811335 | 7.370128e-51 | -8.615850e-47 |
| Msa0104550 | Msa0944990 | -0.808844 | 2.536418e-50 | -8.615850e-47 |
| Msa0672550 | Msa0944990 | -0.822988 | 1.763885e-53 | -8.615850e-47 |
| Msa0682680 | Msa0944990 | -0.801900 | 7.239388e-49 | -8.615850e-47 |
| Msa0687020 | Msa0944990 | -0.803785 | 2.954109e-49 | -8.615850e-47 |
| Msa0697990 | Msa0944990 | 0.834292 | 3.260421e-56 | -8.615850e-47 |
| Msa0187120 | Msa0944990 | -0.807634 | 4.593429e-50 | -8.615850e-47 |
| Msa0212930 | Msa0944990 | -0.803911 | 2.780992e-49 | -8.615850e-47 |
| Msa0220440 | Msa0944990 | -0.802908 | 4.487134e-49 | -8.615850e-47 |
| Msa0453350 | Msa0944990 | -0.806168 | 9.378872e-50 | -8.615850e-47 |
| Msa0467060 | Msa0944990 | -0.807776 | 4.285113e-50 | -8.615850e-47 |
| Msa0253200 | Msa0944990 | -0.820672 | 6.060044e-53 | -8.615850e-47 |
| Msa0261720 | Msa0944990 | -0.809465 | 1.866827e-50 | -8.615850e-47 |
| Msa0292030 | Msa0944990 | -0.821233 | 4.502096e-53 | -8.615850e-47 |
| Msa0319170 | Msa0944990 | -0.805305 | 1.423232e-49 | -8.615850e-47 |
| Msa0510840 | Msa0944990 | -0.801366 | 9.317142e-49 | -8.615850e-47 |
| Msa0556060 | Msa0944990 | -0.800720 | 1.262299e-48 | -8.615850e-47 |
| Msa0908830 | Msa0944990 | 0.841074 | 5.924548e-58 | -8.615850e-47 |
| Msa0908840 | Msa0944990 | 0.880544 | 5.031955e-70 | -8.615850e-47 |
| Msa0908850 | Msa0944990 | 0.871442 | 6.814948e-67 | -8.615850e-47 |
| Msa0908870 | Msa0944990 | 0.864232 | 1.410480e-64 | -8.615850e-47 |
| Msa0908920 | Msa0944990 | 0.848282 | 6.770874e-60 | -8.615850e-47 |
| Msa0908930 | Msa0944990 | 0.983391 | 1.293262e-157 | -8.615850e-47 |
| Msa0920060 | Msa0944990 | 0.814789 | 1.288223e-51 | -8.615850e-47 |
| Msa0932570 | Msa0944990 | -0.800306 | 1.533379e-48 | -8.615850e-47 |
| Msa0942070 | Msa0944990 | -0.808910 | 2.455800e-50 | -8.615850e-47 |
| Msa0944900 | Msa0944990 | 0.891938 | 2.514160e-74 | -8.615850e-47 |
| Msa0944920 | Msa0944990 | 0.880544 | 5.028411e-70 | -8.615850e-47 |
| Msa0944930 | Msa0944990 | 0.875925 | 2.098219e-68 | -8.615850e-47 |
| Msa0944940 | Msa0944990 | 0.844570 | 6.964262e-59 | -8.615850e-47 |
| Msa0944990 | Msa0983170 | 0.836398 | 9.578720e-57 | -8.615850e-47 |
| Msa0944990 | Msa0983180 | 0.884156 | 2.438379e-71 | -8.615850e-47 |
| Msa0944990 | Msa0983190 | 0.885620 | 6.949744e-72 | -8.615850e-47 |
| Msa0944990 | Msa0983210 | 0.876471 | 1.360039e-68 | -8.615850e-47 |
| Msa0944990 | Msa0983220 | 0.847068 | 1.460777e-59 | -8.615850e-47 |
| Msa0944990 | Msa0983260 | 0.995717 | 3.892974e-219 | -8.615850e-47 |
| Msa0944990 | Msa0983300 | 0.833782 | 4.375905e-56 | -8.615850e-47 |
| Msa0944990 | Msa0983310 | 0.802270 | 6.075997e-49 | -8.615850e-47 |
| Msa0944990 | Msa0983320 | 0.852880 | 3.452278e-61 | -8.615850e-47 |
| Msa0944990 | Msa0983350 | 0.843553 | 1.305612e-58 | -8.615850e-47 |
| Msa0944990 | Msa0983460 | 0.876120 | 1.796872e-68 | -8.615850e-47 |
| Msa0944990 | Msa0983490 | 0.853863 | 1.804056e-61 | -8.615850e-47 |
| Msa0944990 | Msa0983500 | 0.888623 | 5.010134e-73 | -8.615850e-47 |
| Msa0944990 | Msa0983520 | 0.874206 | 8.092695e-68 | -8.615850e-47 |
| Msa0944990 | Msa0983530 | 0.875475 | 2.991649e-68 | -8.615850e-47 |
| Msa0944990 | Msa0983540 | 0.843763 | 1.147036e-58 | -8.615850e-47 |
| Msa0944990 | Msa1063510 | -0.825818 | 3.810404e-54 | -8.615850e-47 |
| Msa0944990 | Msa1109680 | -0.808641 | 2.802898e-50 | -8.615850e-47 |
| Msa0944990 | Msa1123470 | -0.804639 | 1.961744e-49 | -8.615850e-47 |
| Msa0944990 | Msa1174040 | -0.807394 | 5.165219e-50 | -8.615850e-47 |
| Msa0944990 | Msa1204630 | -0.807266 | 5.496251e-50 | -8.615850e-47 |
| Msa0944990 | Msa1228620 | 0.851449 | 8.809054e-61 | -8.615850e-47 |
| Msa0944990 | Msa1254730 | -0.801392 | 9.200502e-49 | -8.615850e-47 |
| Msa0944990 | Msa1270660 | -0.800574 | 1.352301e-48 | -8.615850e-47 |
| Msa0944990 | Msa1305710 | -0.806082 | 9.776271e-50 | -8.615850e-47 |
| Msa0944990 | Msa1342900 | -0.800506 | 1.395864e-48 | -8.615850e-47 |
| Msa0944990 | Msa1357890 | -0.802695 | 4.965667e-49 | -8.615850e-47 |
| Msa0944990 | Msa1370070 | 0.803359 | 3.619990e-49 | -8.615850e-47 |
| Msa0944990 | Msa1372760 | -0.803660 | 3.135235e-49 | -8.615850e-47 |
| Msa0944990 | Msa1391970 | 0.842658 | 2.260881e-58 | -8.615850e-47 |
| Msa0944990 | Msa1392010 | 0.843044 | 1.784272e-58 | -8.615850e-47 |
| Msa0944990 | Msa1392030 | 0.836587 | 8.575277e-57 | -8.615850e-47 |
| Msa0944990 | Msa1392120 | 0.868845 | 4.824134e-66 | -8.615850e-47 |
| Msa0944990 | Msa1392160 | 0.882445 | 1.035761e-70 | -8.615850e-47 |
| Msa0944990 | Msa1419640 | -0.802266 | 6.085555e-49 | -8.615850e-47 |
| Msa0944990 | Msa1427230 | -0.802879 | 4.549982e-49 | -8.615850e-47 |
| Msa0944990 | Msa1466540 | -0.818918 | 1.525450e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGTCTGCTATGCGTTTA+AGG | 0.136313 | 6_3:+22427671 | None:intergenic |
| TCGTCTTGTACCTGTCCTTT+TGG | 0.241491 | 6_3:+22428238 | None:intergenic |
| CGTTAAGCCGCGAGAGTTAC+AGG | 0.278769 | 6_3:-22427791 | Msa0944990:CDS |
| AGCATTCTTTGTGGCCCTAT+TGG | 0.280009 | 6_3:-22428347 | Msa0944990:five_prime_UTR |
| TTGGTTGTCACTCGAGTTAC+AGG | 0.291580 | 6_3:-22427730 | Msa0944990:CDS |
| CTGTACGTTCCTTTAGCTAT+AGG | 0.323026 | 6_3:-22427511 | Msa0944990:CDS |
| CGGATATGCTAGTCAAGATT+TGG | 0.353308 | 6_3:-22427749 | Msa0944990:CDS |
| AAAGTCTCCTTTCTTCTTGA+CGG | 0.366612 | 6_3:-22427598 | Msa0944990:CDS |
| TGTTCTTAAAGCATTCTTTG+TGG | 0.408726 | 6_3:-22428356 | None:intergenic |
| TGGCCCTATTGGATCTAGTA+AGG | 0.416151 | 6_3:-22428336 | Msa0944990:five_prime_UTR |
| TTCCCCTTACTAGATCCAAT+AGG | 0.442615 | 6_3:+22428332 | None:intergenic |
| TCAGCATGAAAAGGCATTGA+AGG | 0.461639 | 6_3:+22428188 | None:intergenic |
| GCTGTCTGCTATGCGTTTAA+GGG | 0.465623 | 6_3:+22427672 | None:intergenic |
| CTCTAAACCGTCAAGAAGAA+AGG | 0.482951 | 6_3:+22427591 | None:intergenic |
| TATGTGGAACGGACTATTCT+CGG | 0.483217 | 6_3:+22427478 | None:intergenic |
| TCCCCTTACTAGATCCAATA+GGG | 0.483736 | 6_3:+22428333 | None:intergenic |
| AGTAAGGGGAAGGCGCATAA+TGG | 0.485728 | 6_3:-22428320 | Msa0944990:five_prime_UTR |
| AAGAGAGAGGCTGTCCCAAA+AGG | 0.504987 | 6_3:-22428253 | Msa0944990:CDS |
| CGTGGTATCTGACGGGACAT+TGG | 0.510924 | 6_3:-22427555 | Msa0944990:CDS |
| TAGAGCTTGAACGTGGGCCG+TGG | 0.522206 | 6_3:-22427573 | Msa0944990:CDS |
| AGAGGCTGTCCCAAAAGGAC+AGG | 0.534725 | 6_3:-22428248 | Msa0944990:CDS |
| GCTATGCGTTTAAGGGCATA+AGG | 0.534942 | 6_3:+22427679 | None:intergenic |
| GGAACGGACTATTCTCGGAT+TGG | 0.537533 | 6_3:+22427483 | None:intergenic |
| GACGGTTTAGAGCTTGAACG+TGG | 0.549700 | 6_3:-22427580 | Msa0944990:CDS |
| TCTACCCAATCAGCATGAAA+AGG | 0.549978 | 6_3:+22428179 | None:intergenic |
| CATTGGCCTCCCTCCCGCTA+CGG | 0.557319 | 6_3:-22427538 | Msa0944990:CDS |
| AGCGAGCCGTAGCGGGAGGG+AGG | 0.562909 | 6_3:+22427532 | None:intergenic |
| ACGTGGGCCGTGGTATCTGA+CGG | 0.566135 | 6_3:-22427563 | Msa0944990:CDS |
| GGCCCTATTGGATCTAGTAA+GGG | 0.583375 | 6_3:-22428335 | Msa0944990:five_prime_UTR |
| TTGGACACGCCTATAGCTAA+AGG | 0.585840 | 6_3:+22427502 | None:intergenic |
| CAGCATGAAAAGGCATTGAA+GGG | 0.604261 | 6_3:+22428189 | None:intergenic |
| CAATGTCCCGTCAGATACCA+CGG | 0.604719 | 6_3:+22427556 | None:intergenic |
| CAGGAGAGGAGCGAAGTGAG+AGG | 0.607142 | 6_3:-22427772 | Msa0944990:CDS |
| GTACAGCGAGCCGTAGCGGG+AGG | 0.612644 | 6_3:+22427528 | None:intergenic |
| TATTGGATCTAGTAAGGGGA+AGG | 0.613431 | 6_3:-22428330 | Msa0944990:five_prime_UTR |
| GAACGTACAGCGAGCCGTAG+CGG | 0.616840 | 6_3:+22427524 | None:intergenic |
| GCCCTATTGGATCTAGTAAG+GGG | 0.621995 | 6_3:-22428334 | Msa0944990:five_prime_UTR |
| ACGGTTTAGAGCTTGAACGT+GGG | 0.631741 | 6_3:-22427579 | Msa0944990:CDS |
| CTTCCTTGCACTATGTGGAA+CGG | 0.640584 | 6_3:+22427467 | None:intergenic |
| GAGAGGAGCGAAGTGAGAGG+CGG | 0.650312 | 6_3:-22427769 | Msa0944990:CDS |
| AGGACAGGTACAAGACGAAG+TGG | 0.651118 | 6_3:-22428233 | Msa0944990:CDS |
| GTCACTCGAGTTACAGGAGA+GGG | 0.651239 | 6_3:-22427724 | Msa0944990:CDS |
| CTCCTCTCCTGTAACTCTCG+CGG | 0.659926 | 6_3:+22427784 | None:intergenic |
| AGCCGCGAGAGTTACAGGAG+AGG | 0.663478 | 6_3:-22427786 | Msa0944990:CDS |
| CACATATGAGAAGTGAAACG+TGG | 0.676128 | 6_3:+22427630 | None:intergenic |
| TGTCACTCGAGTTACAGGAG+AGG | 0.744502 | 6_3:-22427725 | Msa0944990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAGAGTTTTGAAAGATGAA+AGG | - | chr6_3:22427530-22427549 | Msa0944990:CDS | 30.0% |
| !!! | GTTTTGAAAGATGAAAGGAA+AGG | - | chr6_3:22427535-22427554 | Msa0944990:CDS | 30.0% |
| ACTAGATATAAGCTATAGGA+TGG | + | chr6_3:22427766-22427785 | None:intergenic | 30.0% | |
| AGTCACTAGATATAAGCTAT+AGG | + | chr6_3:22427770-22427789 | None:intergenic | 30.0% | |
| !! | TGCTTTGAGTTGTATGTTTA+TGG | - | chr6_3:22427841-22427860 | Msa0944990:intron | 30.0% |
| !! | GCTTTGAGTTGTATGTTTAT+GGG | - | chr6_3:22427842-22427861 | Msa0944990:intron | 30.0% |
| AGTTGTATGTTTATGGGTAA+GGG | - | chr6_3:22427848-22427867 | Msa0944990:intron | 30.0% | |
| GGGGAAAGCAAATAAAATAA+AGG | - | chr6_3:22427868-22427887 | Msa0944990:intron | 30.0% | |
| ATCTATCAAGAAGGATGAAT+AGG | + | chr6_3:22427899-22427918 | None:intergenic | 30.0% | |
| GATGAAGAAATCTATCAAGA+AGG | + | chr6_3:22427908-22427927 | None:intergenic | 30.0% | |
| ! | AAGAAGAAAGGAGACTTTTA+GGG | + | chr6_3:22428225-22428244 | None:intergenic | 30.0% |
| !!! | TGAGAGTTTTGAAAGATGAA+AGG | - | chr6_3:22427530-22427549 | Msa0944990:CDS | 30.0% |
| !!! | GTTTTGAAAGATGAAAGGAA+AGG | - | chr6_3:22427535-22427554 | Msa0944990:CDS | 30.0% |
| ACTAGATATAAGCTATAGGA+TGG | + | chr6_3:22427766-22427785 | None:intergenic | 30.0% | |
| AGTCACTAGATATAAGCTAT+AGG | + | chr6_3:22427770-22427789 | None:intergenic | 30.0% | |
| !! | TGCTTTGAGTTGTATGTTTA+TGG | - | chr6_3:22427841-22427860 | Msa0944990:intron | 30.0% |
| !! | GCTTTGAGTTGTATGTTTAT+GGG | - | chr6_3:22427842-22427861 | Msa0944990:intron | 30.0% |
| AGTTGTATGTTTATGGGTAA+GGG | - | chr6_3:22427848-22427867 | Msa0944990:intron | 30.0% | |
| GGGGAAAGCAAATAAAATAA+AGG | - | chr6_3:22427868-22427887 | Msa0944990:intron | 30.0% | |
| ATCTATCAAGAAGGATGAAT+AGG | + | chr6_3:22427899-22427918 | None:intergenic | 30.0% | |
| GATGAAGAAATCTATCAAGA+AGG | + | chr6_3:22427908-22427927 | None:intergenic | 30.0% | |
| ! | AAGAAGAAAGGAGACTTTTA+GGG | + | chr6_3:22428225-22428244 | None:intergenic | 30.0% |
| !! | CTCTCTCTTCATCTTTTTCA+TGG | + | chr6_3:22427561-22427580 | None:intergenic | 35.0% |
| CATGAAAAAGATGAAGAGAG+AGG | - | chr6_3:22427559-22427578 | Msa0944990:CDS | 35.0% | |
| !! | AATGCCTTTTCATGCTGATT+GGG | - | chr6_3:22427642-22427661 | Msa0944990:CDS | 35.0% |
| GATAGCCTATATATAAGGTC+AGG | + | chr6_3:22427736-22427755 | None:intergenic | 35.0% | |
| TTGGGGATAGCCTATATATA+AGG | + | chr6_3:22427741-22427760 | None:intergenic | 35.0% | |
| ! | ATAAGCTATAGGATGGACTT+GGG | + | chr6_3:22427759-22427778 | None:intergenic | 35.0% |
| ! | TATAAGCTATAGGATGGACT+TGG | + | chr6_3:22427760-22427779 | None:intergenic | 35.0% |
| ! | TATCCTTTTCACTAAGCTCT+TGG | - | chr6_3:22427792-22427811 | Msa0944990:CDS | 35.0% |
| ATTCCAAGAGCTTAGTGAAA+AGG | + | chr6_3:22427798-22427817 | None:intergenic | 35.0% | |
| GAGTTGTATGTTTATGGGTA+AGG | - | chr6_3:22427847-22427866 | Msa0944990:intron | 35.0% | |
| GTTGTATGTTTATGGGTAAG+GGG | - | chr6_3:22427849-22427868 | Msa0944990:intron | 35.0% | |
| GCAACAGATCAATATGAATG+AGG | + | chr6_3:22427987-22428006 | None:intergenic | 35.0% | |
| ! | AGAAGAAAGGAGACTTTTAG+GGG | + | chr6_3:22428224-22428243 | None:intergenic | 35.0% |
| ! | CAAGAAGAAAGGAGACTTTT+AGG | + | chr6_3:22428226-22428245 | None:intergenic | 35.0% |
| AAAGTCTCCTTTCTTCTTGA+CGG | - | chr6_3:22428227-22428246 | Msa0944990:CDS | 35.0% | |
| !! | CTCTCTCTTCATCTTTTTCA+TGG | + | chr6_3:22427561-22427580 | None:intergenic | 35.0% |
| CATGAAAAAGATGAAGAGAG+AGG | - | chr6_3:22427559-22427578 | Msa0944990:CDS | 35.0% | |
| !! | AATGCCTTTTCATGCTGATT+GGG | - | chr6_3:22427642-22427661 | Msa0944990:CDS | 35.0% |
| GATAGCCTATATATAAGGTC+AGG | + | chr6_3:22427736-22427755 | None:intergenic | 35.0% | |
| TTGGGGATAGCCTATATATA+AGG | + | chr6_3:22427741-22427760 | None:intergenic | 35.0% | |
| ! | ATAAGCTATAGGATGGACTT+GGG | + | chr6_3:22427759-22427778 | None:intergenic | 35.0% |
| ! | TATAAGCTATAGGATGGACT+TGG | + | chr6_3:22427760-22427779 | None:intergenic | 35.0% |
| ! | TATCCTTTTCACTAAGCTCT+TGG | - | chr6_3:22427792-22427811 | Msa0944990:CDS | 35.0% |
| ATTCCAAGAGCTTAGTGAAA+AGG | + | chr6_3:22427798-22427817 | None:intergenic | 35.0% | |
| GAGTTGTATGTTTATGGGTA+AGG | - | chr6_3:22427847-22427866 | Msa0944990:intron | 35.0% | |
| GTTGTATGTTTATGGGTAAG+GGG | - | chr6_3:22427849-22427868 | Msa0944990:intron | 35.0% | |
| GCAACAGATCAATATGAATG+AGG | + | chr6_3:22427987-22428006 | None:intergenic | 35.0% | |
| ! | AGAAGAAAGGAGACTTTTAG+GGG | + | chr6_3:22428224-22428243 | None:intergenic | 35.0% |
| ! | CAAGAAGAAAGGAGACTTTT+AGG | + | chr6_3:22428226-22428245 | None:intergenic | 35.0% |
| AAAGTCTCCTTTCTTCTTGA+CGG | - | chr6_3:22428227-22428246 | Msa0944990:CDS | 35.0% | |
| TCCCCTTACTAGATCCAATA+GGG | + | chr6_3:22427495-22427514 | None:intergenic | 40.0% | |
| TTCCCCTTACTAGATCCAAT+AGG | + | chr6_3:22427496-22427515 | None:intergenic | 40.0% | |
| TATTGGATCTAGTAAGGGGA+AGG | - | chr6_3:22427495-22427514 | Msa0944990:CDS | 40.0% | |
| !! | CAGCATGAAAAGGCATTGAA+GGG | + | chr6_3:22427639-22427658 | None:intergenic | 40.0% |
| !! | TCAGCATGAAAAGGCATTGA+AGG | + | chr6_3:22427640-22427659 | None:intergenic | 40.0% |
| ! | CAATGCCTTTTCATGCTGAT+TGG | - | chr6_3:22427641-22427660 | Msa0944990:CDS | 40.0% |
| TCTACCCAATCAGCATGAAA+AGG | + | chr6_3:22427649-22427668 | None:intergenic | 40.0% | |
| GGGTAGAAGAAATTTGACCT+CGG | - | chr6_3:22427662-22427681 | Msa0944990:CDS | 40.0% | |
| AGAAGAAATTTGACCTCGGT+TGG | - | chr6_3:22427666-22427685 | Msa0944990:CDS | 40.0% | |
| ACCGACCTGACCTTATATAT+AGG | - | chr6_3:22427728-22427747 | Msa0944990:CDS | 40.0% | |
| GCCTATATATAAGGTCAGGT+CGG | + | chr6_3:22427732-22427751 | None:intergenic | 40.0% | |
| ! | TAAGCTATAGGATGGACTTG+GGG | + | chr6_3:22427758-22427777 | None:intergenic | 40.0% |
| CTTCATCAACAAGCAAAGAG+AGG | - | chr6_3:22427921-22427940 | Msa0944990:intron | 40.0% | |
| CAACAAGCAAAGAGAGGTTT+AGG | - | chr6_3:22427927-22427946 | Msa0944990:intron | 40.0% | |
| CTGTTGAGAATCTTGGATCA+TGG | + | chr6_3:22427953-22427972 | None:intergenic | 40.0% | |
| CATGATCCAAGATTCTCAAC+AGG | - | chr6_3:22427951-22427970 | Msa0944990:intron | 40.0% | |
| CTTGTTCCTGTTGAGAATCT+TGG | + | chr6_3:22427960-22427979 | None:intergenic | 40.0% | |
| CAAGATTCTCAACAGGAACA+AGG | - | chr6_3:22427958-22427977 | Msa0944990:intron | 40.0% | |
| CGGATATGCTAGTCAAGATT+TGG | - | chr6_3:22428076-22428095 | Msa0944990:intron | 40.0% | |
| CACATATGAGAAGTGAAACG+TGG | + | chr6_3:22428198-22428217 | None:intergenic | 40.0% | |
| CTCTAAACCGTCAAGAAGAA+AGG | + | chr6_3:22428237-22428256 | None:intergenic | 40.0% | |
| CTGTACGTTCCTTTAGCTAT+AGG | - | chr6_3:22428314-22428333 | Msa0944990:exon | 40.0% | |
| TCCCCTTACTAGATCCAATA+GGG | + | chr6_3:22427495-22427514 | None:intergenic | 40.0% | |
| TTCCCCTTACTAGATCCAAT+AGG | + | chr6_3:22427496-22427515 | None:intergenic | 40.0% | |
| TATTGGATCTAGTAAGGGGA+AGG | - | chr6_3:22427495-22427514 | Msa0944990:CDS | 40.0% | |
| !! | CAGCATGAAAAGGCATTGAA+GGG | + | chr6_3:22427639-22427658 | None:intergenic | 40.0% |
| !! | TCAGCATGAAAAGGCATTGA+AGG | + | chr6_3:22427640-22427659 | None:intergenic | 40.0% |
| ! | CAATGCCTTTTCATGCTGAT+TGG | - | chr6_3:22427641-22427660 | Msa0944990:CDS | 40.0% |
| TCTACCCAATCAGCATGAAA+AGG | + | chr6_3:22427649-22427668 | None:intergenic | 40.0% | |
| GGGTAGAAGAAATTTGACCT+CGG | - | chr6_3:22427662-22427681 | Msa0944990:CDS | 40.0% | |
| AGAAGAAATTTGACCTCGGT+TGG | - | chr6_3:22427666-22427685 | Msa0944990:CDS | 40.0% | |
| ACCGACCTGACCTTATATAT+AGG | - | chr6_3:22427728-22427747 | Msa0944990:CDS | 40.0% | |
| GCCTATATATAAGGTCAGGT+CGG | + | chr6_3:22427732-22427751 | None:intergenic | 40.0% | |
| ! | TAAGCTATAGGATGGACTTG+GGG | + | chr6_3:22427758-22427777 | None:intergenic | 40.0% |
| CTTCATCAACAAGCAAAGAG+AGG | - | chr6_3:22427921-22427940 | Msa0944990:intron | 40.0% | |
| CAACAAGCAAAGAGAGGTTT+AGG | - | chr6_3:22427927-22427946 | Msa0944990:intron | 40.0% | |
| CTGTTGAGAATCTTGGATCA+TGG | + | chr6_3:22427953-22427972 | None:intergenic | 40.0% | |
| CATGATCCAAGATTCTCAAC+AGG | - | chr6_3:22427951-22427970 | Msa0944990:intron | 40.0% | |
| CTTGTTCCTGTTGAGAATCT+TGG | + | chr6_3:22427960-22427979 | None:intergenic | 40.0% | |
| CAAGATTCTCAACAGGAACA+AGG | - | chr6_3:22427958-22427977 | Msa0944990:intron | 40.0% | |
| CGGATATGCTAGTCAAGATT+TGG | - | chr6_3:22428076-22428095 | Msa0944990:intron | 40.0% | |
| CACATATGAGAAGTGAAACG+TGG | + | chr6_3:22428198-22428217 | None:intergenic | 40.0% | |
| CTCTAAACCGTCAAGAAGAA+AGG | + | chr6_3:22428237-22428256 | None:intergenic | 40.0% | |
| CTGTACGTTCCTTTAGCTAT+AGG | - | chr6_3:22428314-22428333 | Msa0944990:exon | 40.0% | |
| TGGCCCTATTGGATCTAGTA+AGG | - | chr6_3:22427489-22427508 | Msa0944990:CDS | 45.0% | |
| GGCCCTATTGGATCTAGTAA+GGG | - | chr6_3:22427490-22427509 | Msa0944990:CDS | 45.0% | |
| GCCCTATTGGATCTAGTAAG+GGG | - | chr6_3:22427491-22427510 | Msa0944990:CDS | 45.0% | |
| ! | CGTCTTGTACCTGTCCTTTT+GGG | + | chr6_3:22427589-22427608 | None:intergenic | 45.0% |
| ! | TCGTCTTGTACCTGTCCTTT+TGG | + | chr6_3:22427590-22427609 | None:intergenic | 45.0% |
| TCAAAGCAAGTGAGCAGCTT+GGG | + | chr6_3:22427829-22427848 | None:intergenic | 45.0% | |
| TTGATCTGTTGCGAAGCTAC+AGG | - | chr6_3:22427995-22428014 | Msa0944990:intron | 45.0% | |
| TGATCTGTTGCGAAGCTACA+GGG | - | chr6_3:22427996-22428015 | Msa0944990:intron | 45.0% | |
| TTGGTTGTCACTCGAGTTAC+AGG | - | chr6_3:22428095-22428114 | Msa0944990:intron | 45.0% | |
| ! | GCTATGCGTTTAAGGGCATA+AGG | + | chr6_3:22428149-22428168 | None:intergenic | 45.0% |
| GCTGTCTGCTATGCGTTTAA+GGG | + | chr6_3:22428156-22428175 | None:intergenic | 45.0% | |
| AGCTGTCTGCTATGCGTTTA+AGG | + | chr6_3:22428157-22428176 | None:intergenic | 45.0% | |
| !! | AGAAAGGAGACTTTTAGGGG+AGG | + | chr6_3:22428221-22428240 | None:intergenic | 45.0% |
| ! | ACGGTTTAGAGCTTGAACGT+GGG | - | chr6_3:22428246-22428265 | Msa0944990:CDS | 45.0% |
| TTGGACACGCCTATAGCTAA+AGG | + | chr6_3:22428326-22428345 | None:intergenic | 45.0% | |
| TGGCCCTATTGGATCTAGTA+AGG | - | chr6_3:22427489-22427508 | Msa0944990:CDS | 45.0% | |
| GGCCCTATTGGATCTAGTAA+GGG | - | chr6_3:22427490-22427509 | Msa0944990:CDS | 45.0% | |
| GCCCTATTGGATCTAGTAAG+GGG | - | chr6_3:22427491-22427510 | Msa0944990:CDS | 45.0% | |
| ! | CGTCTTGTACCTGTCCTTTT+GGG | + | chr6_3:22427589-22427608 | None:intergenic | 45.0% |
| ! | TCGTCTTGTACCTGTCCTTT+TGG | + | chr6_3:22427590-22427609 | None:intergenic | 45.0% |
| TCAAAGCAAGTGAGCAGCTT+GGG | + | chr6_3:22427829-22427848 | None:intergenic | 45.0% | |
| TTGATCTGTTGCGAAGCTAC+AGG | - | chr6_3:22427995-22428014 | Msa0944990:intron | 45.0% | |
| TGATCTGTTGCGAAGCTACA+GGG | - | chr6_3:22427996-22428015 | Msa0944990:intron | 45.0% | |
| TTGGTTGTCACTCGAGTTAC+AGG | - | chr6_3:22428095-22428114 | Msa0944990:intron | 45.0% | |
| ! | GCTATGCGTTTAAGGGCATA+AGG | + | chr6_3:22428149-22428168 | None:intergenic | 45.0% |
| GCTGTCTGCTATGCGTTTAA+GGG | + | chr6_3:22428156-22428175 | None:intergenic | 45.0% | |
| AGCTGTCTGCTATGCGTTTA+AGG | + | chr6_3:22428157-22428176 | None:intergenic | 45.0% | |
| !! | AGAAAGGAGACTTTTAGGGG+AGG | + | chr6_3:22428221-22428240 | None:intergenic | 45.0% |
| ! | ACGGTTTAGAGCTTGAACGT+GGG | - | chr6_3:22428246-22428265 | Msa0944990:CDS | 45.0% |
| TTGGACACGCCTATAGCTAA+AGG | + | chr6_3:22428326-22428345 | None:intergenic | 45.0% | |
| ! | AGTAAGGGGAAGGCGCATAA+TGG | - | chr6_3:22427505-22427524 | Msa0944990:CDS | 50.0% |
| AAGAGAGAGGCTGTCCCAAA+AGG | - | chr6_3:22427572-22427591 | Msa0944990:CDS | 50.0% | |
| AGGACAGGTACAAGACGAAG+TGG | - | chr6_3:22427592-22427611 | Msa0944990:CDS | 50.0% | |
| CTCAAAGCAAGTGAGCAGCT+TGG | + | chr6_3:22427830-22427849 | None:intergenic | 50.0% | |
| GATCTGTTGCGAAGCTACAG+GGG | - | chr6_3:22427997-22428016 | Msa0944990:intron | 50.0% | |
| TGTCACTCGAGTTACAGGAG+AGG | - | chr6_3:22428100-22428119 | Msa0944990:intron | 50.0% | |
| GTCACTCGAGTTACAGGAGA+GGG | - | chr6_3:22428101-22428120 | Msa0944990:intron | 50.0% | |
| ! | GACGGTTTAGAGCTTGAACG+TGG | - | chr6_3:22428245-22428264 | Msa0944990:CDS | 50.0% |
| CAATGTCCCGTCAGATACCA+CGG | + | chr6_3:22428272-22428291 | None:intergenic | 50.0% | |
| !! | GGAACGGACTATTCTCGGAT+TGG | + | chr6_3:22428345-22428364 | None:intergenic | 50.0% |
| ! | AGTAAGGGGAAGGCGCATAA+TGG | - | chr6_3:22427505-22427524 | Msa0944990:CDS | 50.0% |
| AAGAGAGAGGCTGTCCCAAA+AGG | - | chr6_3:22427572-22427591 | Msa0944990:CDS | 50.0% | |
| AGGACAGGTACAAGACGAAG+TGG | - | chr6_3:22427592-22427611 | Msa0944990:CDS | 50.0% | |
| CTCAAAGCAAGTGAGCAGCT+TGG | + | chr6_3:22427830-22427849 | None:intergenic | 50.0% | |
| GATCTGTTGCGAAGCTACAG+GGG | - | chr6_3:22427997-22428016 | Msa0944990:intron | 50.0% | |
| TGTCACTCGAGTTACAGGAG+AGG | - | chr6_3:22428100-22428119 | Msa0944990:intron | 50.0% | |
| GTCACTCGAGTTACAGGAGA+GGG | - | chr6_3:22428101-22428120 | Msa0944990:intron | 50.0% | |
| ! | GACGGTTTAGAGCTTGAACG+TGG | - | chr6_3:22428245-22428264 | Msa0944990:CDS | 50.0% |
| CAATGTCCCGTCAGATACCA+CGG | + | chr6_3:22428272-22428291 | None:intergenic | 50.0% | |
| !! | GGAACGGACTATTCTCGGAT+TGG | + | chr6_3:22428345-22428364 | None:intergenic | 50.0% |
| AGAGGCTGTCCCAAAAGGAC+AGG | - | chr6_3:22427577-22427596 | Msa0944990:CDS | 55.0% | |
| ! | TTTGACCTCGGTTGGTGCAC+CGG | - | chr6_3:22427674-22427693 | Msa0944990:CDS | 55.0% |
| CGTTAAGCCGCGAGAGTTAC+AGG | - | chr6_3:22428034-22428053 | Msa0944990:intron | 55.0% | |
| CTCCTCTCCTGTAACTCTCG+CGG | + | chr6_3:22428044-22428063 | None:intergenic | 55.0% | |
| CGTGGTATCTGACGGGACAT+TGG | - | chr6_3:22428270-22428289 | Msa0944990:CDS | 55.0% | |
| AGAGGCTGTCCCAAAAGGAC+AGG | - | chr6_3:22427577-22427596 | Msa0944990:CDS | 55.0% | |
| ! | TTTGACCTCGGTTGGTGCAC+CGG | - | chr6_3:22427674-22427693 | Msa0944990:CDS | 55.0% |
| CGTTAAGCCGCGAGAGTTAC+AGG | - | chr6_3:22428034-22428053 | Msa0944990:intron | 55.0% | |
| CTCCTCTCCTGTAACTCTCG+CGG | + | chr6_3:22428044-22428063 | None:intergenic | 55.0% | |
| CGTGGTATCTGACGGGACAT+TGG | - | chr6_3:22428270-22428289 | Msa0944990:CDS | 55.0% | |
| GTATACCGGTGCACCAACCG+AGG | + | chr6_3:22427682-22427701 | None:intergenic | 60.0% | |
| ACCGGTATACCCCCTCCATC+AGG | - | chr6_3:22427692-22427711 | Msa0944990:CDS | 60.0% | |
| ! | CCCTGATGGAGGGGGTATAC+CGG | + | chr6_3:22427696-22427715 | None:intergenic | 60.0% |
| CCGGTATACCCCCTCCATCA+GGG | - | chr6_3:22427693-22427712 | Msa0944990:CDS | 60.0% | |
| CGGTATACCCCCTCCATCAG+GGG | - | chr6_3:22427694-22427713 | Msa0944990:CDS | 60.0% | |
| GCACAATCCCCTGATGGAGG+GGG | + | chr6_3:22427704-22427723 | None:intergenic | 60.0% | |
| CGCACAATCCCCTGATGGAG+GGG | + | chr6_3:22427705-22427724 | None:intergenic | 60.0% | |
| CCGCACAATCCCCTGATGGA+GGG | + | chr6_3:22427706-22427725 | None:intergenic | 60.0% | |
| CCCTCCATCAGGGGATTGTG+CGG | - | chr6_3:22427703-22427722 | Msa0944990:CDS | 60.0% | |
| CCTCCATCAGGGGATTGTGC+GGG | - | chr6_3:22427704-22427723 | Msa0944990:CDS | 60.0% | |
| GTTCCCGCACAATCCCCTGA+TGG | + | chr6_3:22427710-22427729 | None:intergenic | 60.0% | |
| AGCCGCGAGAGTTACAGGAG+AGG | - | chr6_3:22428039-22428058 | Msa0944990:intron | 60.0% | |
| CAGGAGAGGAGCGAAGTGAG+AGG | - | chr6_3:22428053-22428072 | Msa0944990:intron | 60.0% | |
| GAGAGGAGCGAAGTGAGAGG+CGG | - | chr6_3:22428056-22428075 | Msa0944990:intron | 60.0% | |
| TAGAGCTTGAACGTGGGCCG+TGG | - | chr6_3:22428252-22428271 | Msa0944990:CDS | 60.0% | |
| ACGTGGGCCGTGGTATCTGA+CGG | - | chr6_3:22428262-22428281 | Msa0944990:CDS | 60.0% | |
| AACGTACAGCGAGCCGTAGC+GGG | + | chr6_3:22428303-22428322 | None:intergenic | 60.0% | |
| GAACGTACAGCGAGCCGTAG+CGG | + | chr6_3:22428304-22428323 | None:intergenic | 60.0% | |
| GTATACCGGTGCACCAACCG+AGG | + | chr6_3:22427682-22427701 | None:intergenic | 60.0% | |
| ACCGGTATACCCCCTCCATC+AGG | - | chr6_3:22427692-22427711 | Msa0944990:CDS | 60.0% | |
| ! | CCCTGATGGAGGGGGTATAC+CGG | + | chr6_3:22427696-22427715 | None:intergenic | 60.0% |
| CCGGTATACCCCCTCCATCA+GGG | - | chr6_3:22427693-22427712 | Msa0944990:CDS | 60.0% | |
| CGGTATACCCCCTCCATCAG+GGG | - | chr6_3:22427694-22427713 | Msa0944990:CDS | 60.0% | |
| GCACAATCCCCTGATGGAGG+GGG | + | chr6_3:22427704-22427723 | None:intergenic | 60.0% | |
| CGCACAATCCCCTGATGGAG+GGG | + | chr6_3:22427705-22427724 | None:intergenic | 60.0% | |
| CCGCACAATCCCCTGATGGA+GGG | + | chr6_3:22427706-22427725 | None:intergenic | 60.0% | |
| CCCTCCATCAGGGGATTGTG+CGG | - | chr6_3:22427703-22427722 | Msa0944990:CDS | 60.0% | |
| CCTCCATCAGGGGATTGTGC+GGG | - | chr6_3:22427704-22427723 | Msa0944990:CDS | 60.0% | |
| GTTCCCGCACAATCCCCTGA+TGG | + | chr6_3:22427710-22427729 | None:intergenic | 60.0% | |
| AGCCGCGAGAGTTACAGGAG+AGG | - | chr6_3:22428039-22428058 | Msa0944990:intron | 60.0% | |
| CAGGAGAGGAGCGAAGTGAG+AGG | - | chr6_3:22428053-22428072 | Msa0944990:intron | 60.0% | |
| GAGAGGAGCGAAGTGAGAGG+CGG | - | chr6_3:22428056-22428075 | Msa0944990:intron | 60.0% | |
| TAGAGCTTGAACGTGGGCCG+TGG | - | chr6_3:22428252-22428271 | Msa0944990:CDS | 60.0% | |
| ACGTGGGCCGTGGTATCTGA+CGG | - | chr6_3:22428262-22428281 | Msa0944990:CDS | 60.0% | |
| AACGTACAGCGAGCCGTAGC+GGG | + | chr6_3:22428303-22428322 | None:intergenic | 60.0% | |
| GAACGTACAGCGAGCCGTAG+CGG | + | chr6_3:22428304-22428323 | None:intergenic | 60.0% | |
| CCCGCACAATCCCCTGATGG+AGG | + | chr6_3:22427707-22427726 | None:intergenic | 65.0% | |
| CGTGGGCCGTGGTATCTGAC+GGG | - | chr6_3:22428263-22428282 | Msa0944990:CDS | 65.0% | |
| ! | CATTGGCCTCCCTCCCGCTA+CGG | - | chr6_3:22428287-22428306 | Msa0944990:CDS | 65.0% |
| ! | TACAGCGAGCCGTAGCGGGA+GGG | + | chr6_3:22428299-22428318 | None:intergenic | 65.0% |
| CCCGCACAATCCCCTGATGG+AGG | + | chr6_3:22427707-22427726 | None:intergenic | 65.0% | |
| CGTGGGCCGTGGTATCTGAC+GGG | - | chr6_3:22428263-22428282 | Msa0944990:CDS | 65.0% | |
| ! | CATTGGCCTCCCTCCCGCTA+CGG | - | chr6_3:22428287-22428306 | Msa0944990:CDS | 65.0% |
| ! | TACAGCGAGCCGTAGCGGGA+GGG | + | chr6_3:22428299-22428318 | None:intergenic | 65.0% |
| ! | GTACAGCGAGCCGTAGCGGG+AGG | + | chr6_3:22428300-22428319 | None:intergenic | 70.0% |
| ! | GTACAGCGAGCCGTAGCGGG+AGG | + | chr6_3:22428300-22428319 | None:intergenic | 70.0% |
| ! | AGCGAGCCGTAGCGGGAGGG+AGG | + | chr6_3:22428296-22428315 | None:intergenic | 75.0% |
| ! | AGCGAGCCGTAGCGGGAGGG+AGG | + | chr6_3:22428296-22428315 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 22427480 | 22428367 | 22427480 | ID=Msa0944990;Name=Msa0944990 |
| chr6_3 | mRNA | 22427480 | 22428367 | 22427480 | ID=Msa0944990-mRNA-1;Parent=Msa0944990;Name=Msa0944990-mRNA-1;_AED=0.41;_eAED=0.41;_QI=49|0|0|1|1|1|2|0|162 |
| chr6_3 | exon | 22428184 | 22428367 | 22428184 | ID=Msa0944990-mRNA-1:exon:6581;Parent=Msa0944990-mRNA-1 |
| chr6_3 | exon | 22427480 | 22427830 | 22427480 | ID=Msa0944990-mRNA-1:exon:6580;Parent=Msa0944990-mRNA-1 |
| chr6_3 | five_prime_UTR | 22428319 | 22428367 | 22428319 | ID=Msa0944990-mRNA-1:five_prime_utr;Parent=Msa0944990-mRNA-1 |
| chr6_3 | CDS | 22428184 | 22428318 | 22428184 | ID=Msa0944990-mRNA-1:cds;Parent=Msa0944990-mRNA-1 |
| chr6_3 | CDS | 22427480 | 22427830 | 22427480 | ID=Msa0944990-mRNA-1:cds;Parent=Msa0944990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
