Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392010 | KEH16849.1 | 79.679 | 187 | 24 | 3 | 1 | 175 | 1 | 185 | 2.59e-96 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392010 | A0A072TH22 | 79.679 | 187 | 24 | 3 | 1 | 175 | 1 | 185 | 1.24e-96 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026430 | Msa1392010 | -0.805305 | 1.423052e-49 | -8.615850e-47 |
| Msa0026910 | Msa1392010 | -0.802892 | 4.521136e-49 | -8.615850e-47 |
| Msa0043980 | Msa1392010 | -0.813525 | 2.449610e-51 | -8.615850e-47 |
| Msa0051750 | Msa1392010 | -0.805113 | 1.561381e-49 | -8.615850e-47 |
| Msa0069500 | Msa1392010 | 0.810492 | 1.122126e-50 | -8.615850e-47 |
| Msa0074750 | Msa1392010 | -0.805710 | 1.170607e-49 | -8.615850e-47 |
| Msa1357890 | Msa1392010 | -0.805121 | 1.555115e-49 | -8.615850e-47 |
| Msa1364210 | Msa1392010 | -0.801900 | 7.237433e-49 | -8.615850e-47 |
| Msa1391970 | Msa1392010 | 0.837598 | 4.728833e-57 | -8.615850e-47 |
| Msa1392010 | Msa1392020 | 0.829970 | 3.819896e-55 | -8.615850e-47 |
| Msa1392010 | Msa1392030 | 0.838082 | 3.551054e-57 | -8.615850e-47 |
| Msa1392010 | Msa1392120 | 0.856772 | 2.565439e-62 | -8.615850e-47 |
| Msa1392010 | Msa1392160 | 0.857589 | 1.472882e-62 | -8.615850e-47 |
| Msa1392010 | Msa1398090 | -0.804235 | 2.380867e-49 | -8.615850e-47 |
| Msa1392010 | Msa1458810 | -0.801553 | 8.527890e-49 | -8.615850e-47 |
| Msa1392010 | Msa1466540 | -0.801062 | 1.075163e-48 | -8.615850e-47 |
| Msa0692840 | Msa1392010 | -0.801523 | 8.650524e-49 | -8.615850e-47 |
| Msa0697990 | Msa1392010 | 0.814201 | 1.738137e-51 | -8.615850e-47 |
| Msa0709160 | Msa1392010 | -0.807339 | 5.305481e-50 | -8.615850e-47 |
| Msa0709500 | Msa1392010 | -0.818422 | 1.976610e-52 | -8.615850e-47 |
| Msa0711780 | Msa1392010 | -0.802915 | 4.472603e-49 | -8.615850e-47 |
| Msa0721280 | Msa1392010 | -0.801971 | 6.998676e-49 | -8.615850e-47 |
| Msa0724830 | Msa1392010 | -0.800271 | 1.558364e-48 | -8.615850e-47 |
| Msa0790850 | Msa1392010 | -0.809952 | 1.467428e-50 | -8.615850e-47 |
| Msa0794670 | Msa1392010 | -0.803242 | 3.827076e-49 | -8.615850e-47 |
| Msa0827280 | Msa1392010 | -0.806189 | 9.280448e-50 | -8.615850e-47 |
| Msa0157100 | Msa1392010 | -0.804241 | 2.373904e-49 | -8.615850e-47 |
| Msa0173070 | Msa1392010 | -0.833071 | 6.581880e-56 | -8.615850e-47 |
| Msa1228620 | Msa1392010 | 0.865647 | 5.075167e-65 | -8.615850e-47 |
| Msa1305710 | Msa1392010 | -0.816254 | 6.079029e-52 | -8.615850e-47 |
| Msa0380300 | Msa1392010 | -0.804547 | 2.049907e-49 | -8.615850e-47 |
| Msa0390730 | Msa1392010 | -0.801266 | 9.765640e-49 | -8.615850e-47 |
| Msa0983170 | Msa1392010 | 0.831688 | 1.448454e-55 | -8.615850e-47 |
| Msa0983180 | Msa1392010 | 0.884749 | 1.470020e-71 | -8.615850e-47 |
| Msa0983190 | Msa1392010 | 0.882567 | 9.352213e-71 | -8.615850e-47 |
| Msa0983210 | Msa1392010 | 0.847938 | 8.423402e-60 | -8.615850e-47 |
| Msa0983220 | Msa1392010 | 0.818288 | 2.119557e-52 | -8.615850e-47 |
| Msa0983260 | Msa1392010 | 0.839081 | 1.961138e-57 | -8.615850e-47 |
| Msa0983300 | Msa1392010 | 0.839841 | 1.245038e-57 | -8.615850e-47 |
| Msa0983310 | Msa1392010 | 0.835151 | 1.983202e-56 | -8.615850e-47 |
| Msa0983320 | Msa1392010 | 0.984646 | 3.614659e-161 | -8.615850e-47 |
| Msa0983350 | Msa1392010 | 0.835017 | 2.142664e-56 | -8.615850e-47 |
| Msa0983460 | Msa1392010 | 0.864273 | 1.369164e-64 | -8.615850e-47 |
| Msa0983490 | Msa1392010 | 0.833606 | 4.843091e-56 | -8.615850e-47 |
| Msa0983500 | Msa1392010 | 0.863599 | 2.219342e-64 | -8.615850e-47 |
| Msa0983520 | Msa1392010 | 0.871153 | 8.487156e-67 | -8.615850e-47 |
| Msa0983530 | Msa1392010 | 0.880115 | 7.159644e-70 | -8.615850e-47 |
| Msa0983540 | Msa1392010 | 0.861670 | 8.715466e-64 | -8.615850e-47 |
| Msa1012430 | Msa1392010 | -0.800704 | 1.272257e-48 | -8.615850e-47 |
| Msa1023920 | Msa1392010 | -0.803196 | 3.912381e-49 | -8.615850e-47 |
| Msa1089320 | Msa1392010 | -0.803706 | 3.067456e-49 | -8.615850e-47 |
| Msa1093530 | Msa1392010 | -0.804245 | 2.369385e-49 | -8.615850e-47 |
| Msa0261720 | Msa1392010 | -0.800678 | 1.287792e-48 | -8.615850e-47 |
| Msa0271530 | Msa1392010 | -0.823427 | 1.393468e-53 | -8.615850e-47 |
| Msa0300120 | Msa1392010 | -0.808326 | 3.272664e-50 | -8.615850e-47 |
| Msa0311700 | Msa1392010 | -0.801715 | 7.899928e-49 | -8.615850e-47 |
| Msa0326110 | Msa1392010 | -0.804333 | 2.271933e-49 | -8.615850e-47 |
| Msa1107900 | Msa1392010 | -0.803949 | 2.730572e-49 | -8.615850e-47 |
| Msa1109680 | Msa1392010 | -0.804824 | 1.794562e-49 | -8.615850e-47 |
| Msa1135470 | Msa1392010 | -0.812859 | 3.430011e-51 | -8.615850e-47 |
| Msa1171360 | Msa1392010 | -0.817627 | 2.990068e-52 | -8.615850e-47 |
| Msa1193290 | Msa1392010 | -0.803548 | 3.307800e-49 | -8.615850e-47 |
| Msa0565620 | Msa1392010 | 0.805131 | 1.548161e-49 | -8.615850e-47 |
| Msa0860030 | Msa1392010 | 0.808765 | 2.637093e-50 | -8.615850e-47 |
| Msa0876580 | Msa1392010 | -0.805492 | 1.300651e-49 | -8.615850e-47 |
| Msa0880040 | Msa1392010 | -0.805330 | 1.405999e-49 | -8.615850e-47 |
| Msa0908830 | Msa1392010 | 0.836769 | 7.704501e-57 | -8.615850e-47 |
| Msa0908840 | Msa1392010 | 0.885307 | 9.101686e-72 | -8.615850e-47 |
| Msa0908850 | Msa1392010 | 0.870907 | 1.023294e-66 | -8.615850e-47 |
| Msa0908870 | Msa1392010 | 0.846548 | 2.026865e-59 | -8.615850e-47 |
| Msa0908920 | Msa1392010 | 0.865327 | 6.401932e-65 | -8.615850e-47 |
| Msa0908930 | Msa1392010 | 0.834327 | 3.196152e-56 | -8.615850e-47 |
| Msa0920060 | Msa1392010 | 0.817278 | 3.582501e-52 | -8.615850e-47 |
| Msa0944900 | Msa1392010 | 0.876898 | 9.683009e-69 | -8.615850e-47 |
| Msa0944920 | Msa1392010 | 0.877489 | 6.031457e-69 | -8.615850e-47 |
| Msa0944930 | Msa1392010 | 0.884417 | 1.951641e-71 | -8.615850e-47 |
| Msa0944940 | Msa1392010 | 0.850866 | 1.286865e-60 | -8.615850e-47 |
| Msa0944990 | Msa1392010 | 0.843044 | 1.784272e-58 | -8.615850e-47 |
| Msa0970600 | Msa1392010 | -0.809173 | 2.156373e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGCTGTGGGTCAGTTTC+GGG | 0.191312 | tig0021468:-44620 | Msa1392010:CDS |
| TGTGGGTCAGTTTCGGGGCG+GGG | 0.313334 | tig0021468:-44614 | Msa1392010:CDS |
| CTTTCTGTGTGGGACGATGC+CGG | 0.316270 | tig0021468:+45065 | None:intergenic |
| GCTGTGCTGTGGGTCAGTTT+CGG | 0.325201 | tig0021468:-44621 | Msa1392010:CDS |
| GTGGGTCAGTTTCGGGGCGG+GGG | 0.330602 | tig0021468:-44613 | Msa1392010:CDS |
| CTGTGGGTCAGTTTCGGGGC+GGG | 0.351980 | tig0021468:-44615 | Msa1392010:CDS |
| CGCCCATTCGCTTCGCGCGC+GGG | 0.358241 | tig0021468:+44643 | None:intergenic |
| TGACTTCGGTTCGCCAGTTC+AGG | 0.360274 | tig0021468:+44978 | None:intergenic |
| TTCCCGCGCGCGAAGCGAAT+GGG | 0.362487 | tig0021468:-44645 | Msa1392010:CDS |
| TTTGCGCTGCGCGTTCCCGC+TGG | 0.368645 | tig0021468:+44915 | None:intergenic |
| TTTCTGTGTGGGACGATGCC+GGG | 0.378127 | tig0021468:+45066 | None:intergenic |
| CGCGGGAAGGCTACGAAGTT+CGG | 0.381304 | tig0021468:+44660 | None:intergenic |
| CTCGGTCCCCGATGGCCTGC+GGG | 0.387846 | tig0021468:+44866 | None:intergenic |
| CTTCCCGCGCGCGAAGCGAA+TGG | 0.392844 | tig0021468:-44646 | Msa1392010:CDS |
| CCGTCGCCTACTTACCGTTT+AGG | 0.396921 | tig0021468:-44756 | Msa1392010:CDS |
| ACGAAGTTCCTTCCCTTAGC+TGG | 0.398339 | tig0021468:+44718 | None:intergenic |
| TGGCGAACCGAAGTCACTTT+CGG | 0.415405 | tig0021468:-44971 | Msa1392010:CDS |
| GCGCCCATTCGCTTCGCGCG+CGG | 0.425723 | tig0021468:+44642 | None:intergenic |
| AGCGAATGGGCGCTGTGCTG+TGG | 0.429564 | tig0021468:-44632 | Msa1392010:CDS |
| CATTCGCTTCGCGCGCGGGA+AGG | 0.433191 | tig0021468:+44647 | None:intergenic |
| TGGGTCAGTTTCGGGGCGGG+GGG | 0.448710 | tig0021468:-44612 | Msa1392010:CDS |
| GCTGCGCGTTCCCGCTGGAC+TGG | 0.454225 | tig0021468:+44920 | None:intergenic |
| AAGAGAACTGAGCTGGCGCT+TGG | 0.459565 | tig0021468:+45183 | None:intergenic |
| CGTGTTAGCTGTAGGAAGTA+TGG | 0.472037 | tig0021468:+44946 | None:intergenic |
| GCGAGGAGTTGAGCCTGAAC+TGG | 0.476860 | tig0021468:-44991 | Msa1392010:intron |
| GGGACGATGCCGGGGAGAGA+AGG | 0.483121 | tig0021468:+45075 | None:intergenic |
| TCTCGCTGGTGCCACCTAAA+CGG | 0.485900 | tig0021468:+44742 | None:intergenic |
| TTCCCTTAGCTGGATCTCGC+TGG | 0.493334 | tig0021468:+44728 | None:intergenic |
| AGAGAACTGAGCTGGCGCTT+GGG | 0.494487 | tig0021468:+45184 | None:intergenic |
| GGACGATGCCGGGGAGAGAA+GGG | 0.500282 | tig0021468:+45076 | None:intergenic |
| GGCGACGGATGTGTGACGTT+TGG | 0.502967 | tig0021468:+44771 | None:intergenic |
| GACGCATTCCCTTCTCTCCC+CGG | 0.520898 | tig0021468:-45084 | Msa1392010:CDS |
| ATAAATCGATATGTATCTGA+TGG | 0.523902 | tig0021468:-45229 | None:intergenic |
| CTCCATCCATGACAGTGCAT+TGG | 0.532650 | tig0021468:+45150 | None:intergenic |
| GTCCAATGCACTGTCATGGA+TGG | 0.536192 | tig0021468:-45152 | Msa1392010:CDS |
| GCGAATGGGCGCTGTGCTGT+GGG | 0.539770 | tig0021468:-44631 | Msa1392010:CDS |
| AGCTCAGTTCTCTTATCCAT+CGG | 0.540408 | tig0021468:-45174 | Msa1392010:CDS |
| CAATGCACTGTCATGGATGG+AGG | 0.543873 | tig0021468:-45149 | Msa1392010:CDS |
| TTCATGAGACCGCGGCGGAG+TGG | 0.545398 | tig0021468:+44683 | None:intergenic |
| ACTCGGTCCCCGATGGCCTG+CGG | 0.553396 | tig0021468:+44865 | None:intergenic |
| ATCGGTCCAATGCACTGTCA+TGG | 0.554798 | tig0021468:-45156 | Msa1392010:CDS |
| GCTGTGGGTCAGTTTCGGGG+CGG | 0.555599 | tig0021468:-44616 | Msa1392010:CDS |
| GATGGATAAGAGAACTGAGC+TGG | 0.556532 | tig0021468:+45176 | None:intergenic |
| ATGACAGTGCATTGGACCGA+TGG | 0.558632 | tig0021468:+45158 | None:intergenic |
| TTCTGTGTGGGACGATGCCG+GGG | 0.559319 | tig0021468:+45067 | None:intergenic |
| CCTTACCACTCGGTCCCCGA+TGG | 0.572919 | tig0021468:+44858 | None:intergenic |
| TCGGTCCCCGATGGCCTGCG+GGG | 0.576019 | tig0021468:+44867 | None:intergenic |
| TATGGTTCCGAAAGTGACTT+CGG | 0.579844 | tig0021468:+44964 | None:intergenic |
| ATCCAAATGAATCATTCTTG+TGG | 0.586529 | tig0021468:+44579 | None:intergenic |
| CGGTCCCCGATGGCCTGCGG+GGG | 0.603794 | tig0021468:+44868 | None:intergenic |
| TAACACGTGTCCAGTCCAGC+GGG | 0.606235 | tig0021468:-44930 | Msa1392010:CDS |
| GTGCCACCTAAACGGTAAGT+AGG | 0.609035 | tig0021468:+44750 | None:intergenic |
| TGTGCTGTGGGTCAGTTTCG+GGG | 0.610535 | tig0021468:-44619 | Msa1392010:CDS |
| AGCGAGATCCAGCTAAGGGA+AGG | 0.613371 | tig0021468:-44726 | Msa1392010:CDS |
| GCACCAGCGAGATCCAGCTA+AGG | 0.613771 | tig0021468:-44731 | Msa1392010:CDS |
| CACCAGCGAGATCCAGCTAA+GGG | 0.620544 | tig0021468:-44730 | Msa1392010:CDS |
| AATGCACTGTCATGGATGGA+GGG | 0.629806 | tig0021468:-45148 | Msa1392010:CDS |
| ACTGGACACGTGTTAGCTGT+AGG | 0.636729 | tig0021468:+44938 | None:intergenic |
| TCGCCTACTTACCGTTTAGG+TGG | 0.640918 | tig0021468:-44753 | Msa1392010:CDS |
| GCGGCTGCTCCACTCCGCCG+CGG | 0.642559 | tig0021468:-44692 | Msa1392010:CDS |
| GGAGAGAAGGGAATGCGTCG+AGG | 0.646607 | tig0021468:+45088 | None:intergenic |
| GAGAAGGGAATGCGTCGAGG+CGG | 0.663253 | tig0021468:+45091 | None:intergenic |
| GCAGGCCATCGGGGACCGAG+TGG | 0.669923 | tig0021468:-44863 | Msa1392010:intron |
| CTAACACGTGTCCAGTCCAG+CGG | 0.686803 | tig0021468:-44931 | Msa1392010:CDS |
| AGGGAAGGAACTTCGTGTCG+CGG | 0.689775 | tig0021468:-44711 | Msa1392010:CDS |
| CCTAAACGGTAAGTAGGCGA+CGG | 0.699145 | tig0021468:+44756 | None:intergenic |
| TTCGGTTCATGAGACCGCGG+CGG | 0.744018 | tig0021468:+44678 | None:intergenic |
| AAGTTCGGTTCATGAGACCG+CGG | 0.751147 | tig0021468:+44675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AGCTCAGTTCTCTTATCCAT+CGG | - | tig0021468:44635-44654 | Msa1392010:CDS | 40.0% | |
| TATGGTTCCGAAAGTGACTT+CGG | + | tig0021468:44848-44867 | None:intergenic | 40.0% | |
| GGATCACTCATTCTTCCATT+GGG | - | tig0021468:44993-45012 | Msa1392010:intron | 40.0% | |
| GATCACTCATTCTTCCATTG+GGG | - | tig0021468:44994-45013 | Msa1392010:intron | 40.0% | |
| GATGGATAAGAGAACTGAGC+TGG | + | tig0021468:44636-44655 | None:intergenic | 45.0% | |
| AATGCACTGTCATGGATGGA+GGG | - | tig0021468:44661-44680 | Msa1392010:CDS | 45.0% | |
| TGCGCTCTTTCTTTCTGTGT+GGG | + | tig0021468:44757-44776 | None:intergenic | 45.0% | |
| AACTCCTCGCTTTACGTTAG+CGG | + | tig0021468:44808-44827 | None:intergenic | 45.0% | |
| CGTGTTAGCTGTAGGAAGTA+TGG | + | tig0021468:44866-44885 | None:intergenic | 45.0% | |
| CGGATCACTCATTCTTCCAT+TGG | - | tig0021468:44992-45011 | Msa1392010:intron | 45.0% | |
| ATGACAGTGCATTGGACCGA+TGG | + | tig0021468:44654-44673 | None:intergenic | 50.0% | |
| ATCGGTCCAATGCACTGTCA+TGG | - | tig0021468:44653-44672 | Msa1392010:CDS | 50.0% | |
| GTCCAATGCACTGTCATGGA+TGG | - | tig0021468:44657-44676 | Msa1392010:CDS | 50.0% | |
| CTCCATCCATGACAGTGCAT+TGG | + | tig0021468:44662-44681 | None:intergenic | 50.0% | |
| CAATGCACTGTCATGGATGG+AGG | - | tig0021468:44660-44679 | Msa1392010:CDS | 50.0% | |
| CTGCGCTCTTTCTTTCTGTG+TGG | + | tig0021468:44758-44777 | None:intergenic | 50.0% | |
| ! | TGGCGAACCGAAGTCACTTT+CGG | - | tig0021468:44838-44857 | Msa1392010:intron | 50.0% |
| ACTGGACACGTGTTAGCTGT+AGG | + | tig0021468:44874-44893 | None:intergenic | 50.0% | |
| CTCATTCTTCCATTGGGGAC+AGG | - | tig0021468:44999-45018 | Msa1392010:intron | 50.0% | |
| CCTAAACGGTAAGTAGGCGA+CGG | + | tig0021468:45056-45075 | None:intergenic | 50.0% | |
| TCGCCTACTTACCGTTTAGG+TGG | - | tig0021468:45056-45075 | Msa1392010:intron | 50.0% | |
| GTGCCACCTAAACGGTAAGT+AGG | + | tig0021468:45062-45081 | None:intergenic | 50.0% | |
| ACGAAGTTCCTTCCCTTAGC+TGG | + | tig0021468:45094-45113 | None:intergenic | 50.0% | |
| AAGTTCGGTTCATGAGACCG+CGG | + | tig0021468:45137-45156 | None:intergenic | 50.0% | |
| AGAGAACTGAGCTGGCGCTT+GGG | + | tig0021468:44628-44647 | None:intergenic | 55.0% | |
| AAGAGAACTGAGCTGGCGCT+TGG | + | tig0021468:44629-44648 | None:intergenic | 55.0% | |
| TTTCTGTGTGGGACGATGCC+GGG | + | tig0021468:44746-44765 | None:intergenic | 55.0% | |
| CTTTCTGTGTGGGACGATGC+CGG | + | tig0021468:44747-44766 | None:intergenic | 55.0% | |
| ! | AAAGAAAGAGCGCAGAGCCC+CGG | - | tig0021468:44763-44782 | Msa1392010:CDS | 55.0% |
| AGCGGACCTACACTACAGGT+CGG | + | tig0021468:44790-44809 | None:intergenic | 55.0% | |
| ! | CGTTAGCGGACCTACACTAC+AGG | + | tig0021468:44794-44813 | None:intergenic | 55.0% |
| AGGTCCGCTAACGTAAAGCG+AGG | - | tig0021468:44801-44820 | Msa1392010:intron | 55.0% | |
| ! | TGACTTCGGTTCGCCAGTTC+AGG | + | tig0021468:44834-44853 | None:intergenic | 55.0% |
| CTAACACGTGTCCAGTCCAG+CGG | - | tig0021468:44878-44897 | Msa1392010:CDS | 55.0% | |
| TAACACGTGTCCAGTCCAGC+GGG | - | tig0021468:44879-44898 | Msa1392010:CDS | 55.0% | |
| ! | CGGATCATGGCCTTACCACT+CGG | + | tig0021468:44964-44983 | None:intergenic | 55.0% |
| TGGTAAGGCCATGATCCGCA+GGG | - | tig0021468:44966-44985 | Msa1392010:CDS | 55.0% | |
| ATGAGTGATCCGTTCCCCTG+CGG | + | tig0021468:44984-45003 | None:intergenic | 55.0% | |
| CCGTCGCCTACTTACCGTTT+AGG | - | tig0021468:45053-45072 | Msa1392010:intron | 55.0% | |
| !! | TCTCGCTGGTGCCACCTAAA+CGG | + | tig0021468:45070-45089 | None:intergenic | 55.0% |
| CACCAGCGAGATCCAGCTAA+GGG | - | tig0021468:45079-45098 | Msa1392010:intron | 55.0% | |
| TTCCCTTAGCTGGATCTCGC+TGG | + | tig0021468:45084-45103 | None:intergenic | 55.0% | |
| AGCGAGATCCAGCTAAGGGA+AGG | - | tig0021468:45083-45102 | Msa1392010:CDS | 55.0% | |
| AGGGAAGGAACTTCGTGTCG+CGG | - | tig0021468:45098-45117 | Msa1392010:CDS | 55.0% | |
| GCTGTGCTGTGGGTCAGTTT+CGG | - | tig0021468:45188-45207 | Msa1392010:CDS | 55.0% | |
| CTGTGCTGTGGGTCAGTTTC+GGG | - | tig0021468:45189-45208 | Msa1392010:CDS | 55.0% | |
| TGTGCTGTGGGTCAGTTTCG+GGG | - | tig0021468:45190-45209 | Msa1392010:CDS | 55.0% | |
| GAGAAGGGAATGCGTCGAGG+CGG | + | tig0021468:44721-44740 | None:intergenic | 60.0% | |
| GGAGAGAAGGGAATGCGTCG+AGG | + | tig0021468:44724-44743 | None:intergenic | 60.0% | |
| GACGCATTCCCTTCTCTCCC+CGG | - | tig0021468:44725-44744 | Msa1392010:CDS | 60.0% | |
| TTCTGTGTGGGACGATGCCG+GGG | + | tig0021468:44745-44764 | None:intergenic | 60.0% | |
| ACCTACACTACAGGTCGGGC+CGG | + | tig0021468:44785-44804 | None:intergenic | 60.0% | |
| GCGGACCTACACTACAGGTC+GGG | + | tig0021468:44789-44808 | None:intergenic | 60.0% | |
| GCGAGGAGTTGAGCCTGAAC+TGG | - | tig0021468:44818-44837 | Msa1392010:intron | 60.0% | |
| TGCTATACCGAATCCCCCGC+AGG | - | tig0021468:44928-44947 | Msa1392010:CDS | 60.0% | |
| GTGGTAAGGCCATGATCCGC+AGG | - | tig0021468:44965-44984 | Msa1392010:CDS | 60.0% | |
| GGTAAGGCCATGATCCGCAG+GGG | - | tig0021468:44967-44986 | Msa1392010:CDS | 60.0% | |
| ATCCGTTCCCCTGCGGATCA+TGG | + | tig0021468:44977-44996 | None:intergenic | 60.0% | |
| GTTCGTGCACCTGTCCCCAA+TGG | + | tig0021468:45011-45030 | None:intergenic | 60.0% | |
| GGCGACGGATGTGTGACGTT+TGG | + | tig0021468:45041-45060 | None:intergenic | 60.0% | |
| GCACCAGCGAGATCCAGCTA+AGG | - | tig0021468:45078-45097 | Msa1392010:intron | 60.0% | |
| TTCGGTTCATGAGACCGCGG+CGG | + | tig0021468:45134-45153 | None:intergenic | 60.0% | |
| CGCGGGAAGGCTACGAAGTT+CGG | + | tig0021468:45152-45171 | None:intergenic | 60.0% | |
| GGACGATGCCGGGGAGAGAA+GGG | + | tig0021468:44736-44755 | None:intergenic | 65.0% | |
| CTACACTACAGGTCGGGCCG+GGG | + | tig0021468:44783-44802 | None:intergenic | 65.0% | |
| CCTACACTACAGGTCGGGCC+GGG | + | tig0021468:44784-44803 | None:intergenic | 65.0% | |
| CCTTACCACTCGGTCCCCGA+TGG | + | tig0021468:44954-44973 | None:intergenic | 65.0% | |
| CCATCGGGGACCGAGTGGTA+AGG | - | tig0021468:44951-44970 | Msa1392010:CDS | 65.0% | |
| GGCCATGATCCGCAGGGGAA+CGG | - | tig0021468:44972-44991 | Msa1392010:CDS | 65.0% | |
| TTCATGAGACCGCGGCGGAG+TGG | + | tig0021468:45129-45148 | None:intergenic | 65.0% | |
| TTCCCGCGCGCGAAGCGAAT+GGG | - | tig0021468:45164-45183 | Msa1392010:CDS | 65.0% | |
| ! | AGCGAATGGGCGCTGTGCTG+TGG | - | tig0021468:45177-45196 | Msa1392010:CDS | 65.0% |
| ! | GCGAATGGGCGCTGTGCTGT+GGG | - | tig0021468:45178-45197 | Msa1392010:CDS | 65.0% |
| GCTGTGGGTCAGTTTCGGGG+CGG | - | tig0021468:45193-45212 | Msa1392010:CDS | 65.0% | |
| CTGTGGGTCAGTTTCGGGGC+GGG | - | tig0021468:45194-45213 | Msa1392010:CDS | 65.0% | |
| TGTGGGTCAGTTTCGGGGCG+GGG | - | tig0021468:45195-45214 | Msa1392010:CDS | 65.0% | |
| GGGACGATGCCGGGGAGAGA+AGG | + | tig0021468:44737-44756 | None:intergenic | 70.0% | |
| CCCGGCCCGACCTGTAGTGT+AGG | - | tig0021468:44781-44800 | Msa1392010:CDS | 70.0% | |
| TTTGCGCTGCGCGTTCCCGC+TGG | + | tig0021468:44897-44916 | None:intergenic | 70.0% | |
| CCGATGGCCTGCGGGGGATT+CGG | + | tig0021468:44938-44957 | None:intergenic | 70.0% | |
| CCGAATCCCCCGCAGGCCAT+CGG | - | tig0021468:44935-44954 | Msa1392010:CDS | 70.0% | |
| CGAATCCCCCGCAGGCCATC+GGG | - | tig0021468:44936-44955 | Msa1392010:CDS | 70.0% | |
| GAATCCCCCGCAGGCCATCG+GGG | - | tig0021468:44937-44956 | Msa1392010:CDS | 70.0% | |
| ACTCGGTCCCCGATGGCCTG+CGG | + | tig0021468:44947-44966 | None:intergenic | 70.0% | |
| CATTCGCTTCGCGCGCGGGA+AGG | + | tig0021468:45165-45184 | None:intergenic | 70.0% | |
| CTTCCCGCGCGCGAAGCGAA+TGG | - | tig0021468:45163-45182 | Msa1392010:CDS | 70.0% | |
| GTGGGTCAGTTTCGGGGCGG+GGG | - | tig0021468:45196-45215 | Msa1392010:CDS | 70.0% | |
| TGGGTCAGTTTCGGGGCGGG+GGG | - | tig0021468:45197-45216 | Msa1392010:CDS | 70.0% | |
| GCTGCGCGTTCCCGCTGGAC+TGG | + | tig0021468:44892-44911 | None:intergenic | 75.0% | |
| TCGGTCCCCGATGGCCTGCG+GGG | + | tig0021468:44945-44964 | None:intergenic | 75.0% | |
| CTCGGTCCCCGATGGCCTGC+GGG | + | tig0021468:44946-44965 | None:intergenic | 75.0% | |
| GCAGGCCATCGGGGACCGAG+TGG | - | tig0021468:44946-44965 | Msa1392010:CDS | 75.0% | |
| CGCCCATTCGCTTCGCGCGC+GGG | + | tig0021468:45169-45188 | None:intergenic | 75.0% | |
| GCGCCCATTCGCTTCGCGCG+CGG | + | tig0021468:45170-45189 | None:intergenic | 75.0% | |
| ! | CGGTCCCCGATGGCCTGCGG+GGG | + | tig0021468:44944-44963 | None:intergenic | 80.0% |
| ! | GCGGCTGCTCCACTCCGCCG+CGG | - | tig0021468:45117-45136 | Msa1392010:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021468 | gene | 44590 | 45241 | 44590 | ID=Msa1392010;Name=Msa1392010 |
| tig0021468 | mRNA | 44590 | 45241 | 44590 | ID=Msa1392010-mRNA-1;Parent=Msa1392010;Name=Msa1392010-mRNA-1;_AED=0.41;_eAED=0.46;_QI=0|0|0|1|0|0.33|3|0|175 |
| tig0021468 | exon | 45080 | 45241 | 45080 | ID=Msa1392010-mRNA-1:exon:12979;Parent=Msa1392010-mRNA-1 |
| tig0021468 | exon | 44864 | 45008 | 44864 | ID=Msa1392010-mRNA-1:exon:12978;Parent=Msa1392010-mRNA-1 |
| tig0021468 | exon | 44590 | 44810 | 44590 | ID=Msa1392010-mRNA-1:exon:12977;Parent=Msa1392010-mRNA-1 |
| tig0021468 | CDS | 45080 | 45241 | 45080 | ID=Msa1392010-mRNA-1:cds;Parent=Msa1392010-mRNA-1 |
| tig0021468 | CDS | 44864 | 45008 | 44864 | ID=Msa1392010-mRNA-1:cds;Parent=Msa1392010-mRNA-1 |
| tig0021468 | CDS | 44590 | 44810 | 44590 | ID=Msa1392010-mRNA-1:cds;Parent=Msa1392010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
