Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935740 | sp|Q9LFR3|GASAE_ARATH | 64.615 | 65 | 23 | 0 | 166 | 230 | 211 | 275 | 3.40e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935740 | I3T630 | 92.623 | 244 | 4 | 1 | 1 | 230 | 5 | 248 | 9.18e-143 | 408 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042640 | Msa0935740 | 0.823381 | 1.428148e-53 | -8.615850e-47 |
| Msa0077560 | Msa0935740 | 0.801167 | 1.023286e-48 | -8.615850e-47 |
| Msa0094790 | Msa0935740 | 0.804864 | 1.760413e-49 | -8.615850e-47 |
| Msa0620900 | Msa0935740 | 0.808095 | 3.664461e-50 | -8.615850e-47 |
| Msa0662820 | Msa0935740 | 0.816222 | 6.180597e-52 | -8.615850e-47 |
| Msa0719270 | Msa0935740 | 0.818739 | 1.675006e-52 | -8.615850e-47 |
| Msa0734250 | Msa0935740 | 0.818639 | 1.765077e-52 | -8.615850e-47 |
| Msa0740710 | Msa0935740 | 0.814551 | 1.454231e-51 | -8.615850e-47 |
| Msa0745140 | Msa0935740 | 0.806073 | 9.817837e-50 | -8.615850e-47 |
| Msa0776640 | Msa0935740 | 0.808150 | 3.567199e-50 | -8.615850e-47 |
| Msa0778600 | Msa0935740 | 0.820422 | 6.916208e-53 | -8.615850e-47 |
| Msa0813160 | Msa0935740 | 0.804256 | 2.357558e-49 | -8.615850e-47 |
| Msa0815970 | Msa0935740 | 0.805109 | 1.564535e-49 | -8.615850e-47 |
| Msa0825920 | Msa0935740 | 0.805562 | 1.257125e-49 | -8.615850e-47 |
| Msa0840520 | Msa0935740 | 0.814850 | 1.248443e-51 | -8.615850e-47 |
| Msa0140130 | Msa0935740 | 0.830349 | 3.087481e-55 | -8.615850e-47 |
| Msa0154620 | Msa0935740 | 0.800465 | 1.423230e-48 | -8.615850e-47 |
| Msa0178450 | Msa0935740 | 0.808751 | 2.655247e-50 | -8.615850e-47 |
| Msa0184500 | Msa0935740 | 0.807555 | 4.773285e-50 | -8.615850e-47 |
| Msa0367690 | Msa0935740 | 0.827430 | 1.570967e-54 | -8.615850e-47 |
| Msa0412790 | Msa0935740 | 0.805310 | 1.420052e-49 | -8.615850e-47 |
| Msa0415450 | Msa0935740 | 0.829926 | 3.916595e-55 | -8.615850e-47 |
| Msa0457560 | Msa0935740 | 0.807217 | 5.630317e-50 | -8.615850e-47 |
| Msa0457570 | Msa0935740 | 0.831358 | 1.746840e-55 | -8.615850e-47 |
| Msa0460070 | Msa0935740 | 0.828599 | 8.220545e-55 | -8.615850e-47 |
| Msa0330520 | Msa0935740 | 0.802997 | 4.301567e-49 | -8.615850e-47 |
| Msa0347530 | Msa0935740 | 0.814637 | 1.392393e-51 | -8.615850e-47 |
| Msa0865420 | Msa0935740 | 0.810635 | 1.045195e-50 | -8.615850e-47 |
| Msa0866530 | Msa0935740 | 0.811591 | 6.483448e-51 | -8.615850e-47 |
| Msa0935740 | Msa0972740 | 0.953116 | 5.554151e-111 | -8.615850e-47 |
| Msa0935740 | Msa1145300 | 0.814674 | 1.365817e-51 | -8.615850e-47 |
| Msa0935740 | Msa1192560 | 0.813257 | 2.804661e-51 | -8.615850e-47 |
| Msa0935740 | Msa1192590 | 0.811078 | 8.381524e-51 | -8.615850e-47 |
| Msa0935740 | Msa1228580 | 0.800223 | 1.593661e-48 | -8.615850e-47 |
| Msa0935740 | Msa1252790 | 0.802617 | 5.153850e-49 | -8.615850e-47 |
| Msa0935740 | Msa1263780 | 0.803284 | 3.750952e-49 | -8.615850e-47 |
| Msa0935740 | Msa1279120 | 0.800132 | 1.663825e-48 | -8.615850e-47 |
| Msa0935740 | Msa1308850 | 0.809545 | 1.795090e-50 | -8.615850e-47 |
| Msa0935740 | Msa1321530 | 0.810358 | 1.199614e-50 | -8.615850e-47 |
| Msa0935740 | Msa1391500 | 0.801399 | 9.169133e-49 | -8.615850e-47 |
| Msa0935740 | Msa1407840 | 0.828854 | 7.133465e-55 | -8.615850e-47 |
| Msa0935740 | Msa1417370 | 0.826026 | 3.399979e-54 | -8.615850e-47 |
| Msa0935740 | Msa1435960 | 0.806580 | 7.676891e-50 | -8.615850e-47 |
| Msa0935740 | Msa1436620 | 0.816193 | 6.274802e-52 | -8.615850e-47 |
| Msa0935740 | Msa1437810 | 0.826854 | 2.158695e-54 | -8.615850e-47 |
| Msa0935740 | Msa1454500 | 0.810196 | 1.299702e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935740 | MtrunA17_Chr6g0451481 | 90.870 | 230 | 6 | 3 | 1 | 230 | 5 | 219 | 4.62e-125 | 353 |
| Msa0935740 | MtrunA17_Chr6g0451501 | 41.304 | 230 | 63 | 5 | 1 | 230 | 5 | 162 | 2.07e-44 | 146 |
| Msa0935740 | MtrunA17_Chr6g0451491 | 59.615 | 104 | 37 | 2 | 132 | 230 | 27 | 130 | 7.29e-34 | 118 |
| Msa0935740 | MtrunA17_Chr8g0364311 | 67.188 | 64 | 21 | 0 | 167 | 230 | 49 | 112 | 2.49e-26 | 98.6 |
| Msa0935740 | MtrunA17_Chr4g0059421 | 70.492 | 61 | 18 | 0 | 170 | 230 | 55 | 115 | 4.17e-23 | 90.1 |
| Msa0935740 | MtrunA17_Chr1g0200531 | 53.731 | 67 | 30 | 1 | 164 | 230 | 35 | 100 | 5.03e-17 | 73.9 |
| Msa0935740 | MtrunA17_Chr3g0142671 | 51.515 | 66 | 31 | 1 | 165 | 230 | 39 | 103 | 1.43e-14 | 67.4 |
| Msa0935740 | MtrunA17_Chr1g0156601 | 57.377 | 61 | 25 | 1 | 170 | 230 | 42 | 101 | 3.61e-14 | 66.2 |
| Msa0935740 | MtrunA17_Chr1g0156621 | 55.738 | 61 | 26 | 1 | 170 | 230 | 41 | 100 | 2.62e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935740 | AT5G14920.1 | 64.615 | 65 | 23 | 0 | 166 | 230 | 211 | 275 | 3.46e-27 | 105 |
| Msa0935740 | AT1G75750.1 | 55.738 | 61 | 26 | 1 | 170 | 230 | 39 | 98 | 2.11e-13 | 64.7 |
| Msa0935740 | AT1G75750.2 | 55.738 | 61 | 26 | 1 | 170 | 230 | 38 | 97 | 2.40e-13 | 64.3 |
| Msa0935740 | AT2G18420.1 | 55.738 | 61 | 26 | 1 | 170 | 230 | 35 | 94 | 2.05e-12 | 61.6 |
| Msa0935740 | AT2G18420.2 | 55.738 | 61 | 26 | 1 | 170 | 230 | 11 | 70 | 2.47e-12 | 60.8 |
| Msa0935740 | AT1G22690.1 | 50.820 | 61 | 29 | 1 | 170 | 230 | 60 | 119 | 3.88e-12 | 61.6 |
| Msa0935740 | AT1G22690.2 | 50.820 | 61 | 29 | 1 | 170 | 230 | 60 | 119 | 3.88e-12 | 61.6 |
| Msa0935740 | AT1G22690.3 | 50.820 | 61 | 29 | 1 | 170 | 230 | 60 | 119 | 3.88e-12 | 61.6 |
| Msa0935740 | AT4G09600.1 | 54.098 | 61 | 27 | 1 | 170 | 230 | 40 | 99 | 8.49e-12 | 60.1 |
Find 87 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATAAATTCAAAATTCT+TGG | 0.209274 | 6_3:-6366911 | None:intergenic |
| CCCTTCCATGATTTGACTAT+TGG | 0.212965 | 6_3:-6366167 | None:intergenic |
| ATTTATATATTGAAATTAAA+TGG | 0.222516 | 6_3:+6366924 | Msa0935740:three_prime_UTR |
| GCATTCCACTATGTGGTTAT+AGG | 0.264033 | 6_3:+6366588 | Msa0935740:CDS |
| ATCACCTCCTTCTCCTCCTT+TGG | 0.313521 | 6_3:+6366013 | Msa0935740:CDS |
| GGTGCAAATATATGTATCTA+TGG | 0.355334 | 6_3:-6366764 | None:intergenic |
| ATATTTGCACCTATATCTAA+TGG | 0.367682 | 6_3:+6366776 | Msa0935740:three_prime_UTR |
| GAAGCAGGGACAAGAAAGTA+TGG | 0.379188 | 6_3:-6364680 | None:intergenic |
| TCTCTGTTACCATAAGTTCC+TGG | 0.385043 | 6_3:-6366686 | None:intergenic |
| ACAATAGGTGGTGATTGATA+TGG | 0.386150 | 6_3:-6365942 | None:intergenic |
| TGTGTCCCTCCAGGAACTTA+TGG | 0.404918 | 6_3:+6366677 | Msa0935740:CDS |
| GGTGTTGGTGGTGCCTTCAC+TGG | 0.418572 | 6_3:-6365822 | None:intergenic |
| ACTATTGGTGGTGATTGATA+AGG | 0.424720 | 6_3:-6366110 | None:intergenic |
| GTTGGTGGTGCCTTCACTAT+AGG | 0.433989 | 6_3:-6366062 | None:intergenic |
| TGGCAAGTGTTACACTGATA+TGG | 0.441521 | 6_3:+6366715 | Msa0935740:CDS |
| GCTTAGAAACCATTAGATAT+AGG | 0.445934 | 6_3:-6366785 | None:intergenic |
| TAAGGTGGTGATTTAACTAA+AGG | 0.446310 | 6_3:-6365846 | None:intergenic |
| GAAGGAGGTGATTTCACAAT+AGG | 0.447190 | 6_3:-6365897 | None:intergenic |
| GAAGGAGGTGATTTCACAAT+AGG | 0.449629 | 6_3:-6366002 | None:intergenic |
| TTCATTTCTGGGAAGTAAGT+AGG | 0.453699 | 6_3:+6367030 | Msa0935740:three_prime_UTR |
| GGAGAAGGTGGTGTTACTAT+AGG | 0.467704 | 6_3:-6365801 | None:intergenic |
| ACTATAGGTGGAGGAGTTGG+TGG | 0.476412 | 6_3:-6366077 | None:intergenic |
| TTCACTATAGGTGGAGGAGT+TGG | 0.477408 | 6_3:-6366080 | None:intergenic |
| GGAGAAGGTGCCTTTACAAT+AGG | 0.477945 | 6_3:-6365957 | None:intergenic |
| CTACTCCAATAGTCAAATCA+TGG | 0.478634 | 6_3:+6366162 | Msa0935740:CDS |
| ATCACCTCCTTCACCACCAT+TGG | 0.482927 | 6_3:+6365908 | Msa0935740:CDS |
| GAGTAAAGATTATACCTTAG+TGG | 0.483133 | 6_3:-6364754 | None:intergenic |
| ATAGGTGGTGTTGGTTTCAC+TGG | 0.498511 | 6_3:-6365879 | None:intergenic |
| GGTGGTGGAGATGGAGCAAC+TGG | 0.499198 | 6_3:-6366140 | None:intergenic |
| ACTATAGGTGGTGATTGATA+AGG | 0.503850 | 6_3:-6366047 | None:intergenic |
| GATTTCACAATAGGTGGTGT+TGG | 0.507384 | 6_3:-6365888 | None:intergenic |
| GATTTCACAATAGGTGGTGT+TGG | 0.507384 | 6_3:-6365993 | None:intergenic |
| TTCACTGGTGGTGATTGATA+AGG | 0.508150 | 6_3:-6365864 | None:intergenic |
| TGATGAAGATCTCAAGATAG+TGG | 0.509151 | 6_3:+6364976 | Msa0935740:CDS |
| CGGTGCAAATGTGTCCCTCC+AGG | 0.510158 | 6_3:+6366668 | Msa0935740:CDS |
| ATAGGACTTGGTGGAGCTGT+AGG | 0.510347 | 6_3:-6365783 | None:intergenic |
| GAAATTAAATGGTATTGTCA+TGG | 0.514776 | 6_3:+6366935 | Msa0935740:three_prime_UTR |
| TTCAAAATTCTTGGACCACA+AGG | 0.516811 | 6_3:-6366902 | None:intergenic |
| CATGATTTGACTATTGGAGT+AGG | 0.520632 | 6_3:-6366161 | None:intergenic |
| GATTTAACTAAAGGTGGTGT+TGG | 0.520898 | 6_3:-6365837 | None:intergenic |
| TTGACTATTGGAGTAGGTGG+TGG | 0.529784 | 6_3:-6366155 | None:intergenic |
| TATATGTATCTATGGACACT+TGG | 0.529858 | 6_3:-6366756 | None:intergenic |
| TCCAATAGTCAAATCATGGA+AGG | 0.539250 | 6_3:+6366166 | Msa0935740:CDS |
| ATTGGAGTAGGTGGTGGAGA+TGG | 0.542148 | 6_3:-6366149 | None:intergenic |
| TCAATCACCACCTATTGTAA+AGG | 0.543871 | 6_3:+6365947 | Msa0935740:CDS |
| TAGGACTTGGTGGAGCTGTA+GGG | 0.552061 | 6_3:-6365782 | None:intergenic |
| TGCCACCTATAACCACATAG+TGG | 0.552964 | 6_3:-6366593 | None:intergenic |
| TTAACTAAAGGTGGTGTTGG+TGG | 0.560001 | 6_3:-6365834 | None:intergenic |
| GGTGGTGCCTTCACTGGAGA+AGG | 0.561894 | 6_3:-6365816 | None:intergenic |
| GGTGTTACTATAGGACTTGG+TGG | 0.562271 | 6_3:-6365792 | None:intergenic |
| GGTGGTGATTTAACTAAAGG+TGG | 0.563616 | 6_3:-6365843 | None:intergenic |
| TTACAATTATATAGAGGTCA+AGG | 0.565288 | 6_3:-6364601 | None:intergenic |
| GGTGGTGTTACTATAGGACT+TGG | 0.566564 | 6_3:-6365795 | None:intergenic |
| GAAGGTGCCTTTACAATAGG+TGG | 0.569135 | 6_3:-6365954 | None:intergenic |
| GGTGGTGTTGGTTTCACTAG+AGG | 0.574102 | 6_3:-6365981 | None:intergenic |
| CTGGAGGGACACATTTGCAC+CGG | 0.583431 | 6_3:-6366667 | None:intergenic |
| GGTTTCACTAGAGGAGGAGA+AGG | 0.586785 | 6_3:-6365972 | None:intergenic |
| TTCACCAAAGGAGGAGAAGG+AGG | 0.588422 | 6_3:-6366017 | None:intergenic |
| AACACCACCTTCTCCAGTGA+AGG | 0.591450 | 6_3:+6365809 | Msa0935740:CDS |
| GCAGATTGCATTCCACTATG+TGG | 0.591494 | 6_3:+6366581 | Msa0935740:intron |
| CCAATAGTCAAATCATGGAA+GGG | 0.592284 | 6_3:+6366167 | Msa0935740:CDS |
| GGTGTTGGTTTCACTAGAGG+AGG | 0.593802 | 6_3:-6365978 | None:intergenic |
| GATTTCACCAATGGTGGTGA+AGG | 0.594431 | 6_3:-6365915 | None:intergenic |
| GGTGGTGTTGGTTTCACTGG+TGG | 0.594612 | 6_3:-6365876 | None:intergenic |
| GTGTCAAGAGCTATCTAGTG+AGG | 0.598375 | 6_3:-6364652 | None:intergenic |
| GGAGGTGATTTCACAATAGG+TGG | 0.599121 | 6_3:-6365894 | None:intergenic |
| GGAGGTGATTTCACAATAGG+TGG | 0.599121 | 6_3:-6365999 | None:intergenic |
| CTAGTCTTACAATTATATAG+AGG | 0.601350 | 6_3:-6364607 | None:intergenic |
| TATGGTGGTGATTTCACCAA+TGG | 0.601372 | 6_3:-6365924 | None:intergenic |
| ATATGTATCTATGGACACTT+GGG | 0.603166 | 6_3:-6366755 | None:intergenic |
| GGTGCCTTCACTGGAGAAGG+TGG | 0.604169 | 6_3:-6365813 | None:intergenic |
| ATTGGTGGTGATTGATAAGG+AGG | 0.614855 | 6_3:-6366107 | None:intergenic |
| TCAATCACCACCTATAGTGA+AGG | 0.619479 | 6_3:+6366052 | Msa0935740:CDS |
| ATAGGTGGTGATTGATATGG+TGG | 0.620609 | 6_3:-6365939 | None:intergenic |
| ACTGGTGGTGATTGATAAGG+TGG | 0.624494 | 6_3:-6365861 | None:intergenic |
| TTCCACTATGTGGTTATAGG+TGG | 0.627525 | 6_3:+6366591 | Msa0935740:CDS |
| CATGCATGACTTGTTGTGAC+CGG | 0.628034 | 6_3:+6366648 | Msa0935740:CDS |
| TACACTGATATGGTGACTCA+TGG | 0.628922 | 6_3:+6366725 | Msa0935740:CDS |
| ACGTAATATTATGATCCTTG+TGG | 0.631450 | 6_3:+6366887 | Msa0935740:three_prime_UTR |
| TTCACCAATGGTGGTGAAGG+AGG | 0.636204 | 6_3:-6365912 | None:intergenic |
| GGTGGTGCCTTCACTATAGG+TGG | 0.638916 | 6_3:-6366059 | None:intergenic |
| CTGTTACCATAAGTTCCTGG+AGG | 0.651625 | 6_3:-6366683 | None:intergenic |
| GATTTGACTATTGGAGTAGG+TGG | 0.657281 | 6_3:-6366158 | None:intergenic |
| GGTGGAGATGGAGCAACTGG+TGG | 0.657637 | 6_3:-6366137 | None:intergenic |
| ATAGGTGGTGATTGATAAGG+TGG | 0.660552 | 6_3:-6366044 | None:intergenic |
| GGTGGTGATTTCACCAATGG+TGG | 0.693978 | 6_3:-6365921 | None:intergenic |
| TGTTACCATAAGTTCCTGGA+GGG | 0.694188 | 6_3:-6366682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAATTAGAAGTA+TGG | - | chr6_3:6365399-6365418 | None:intergenic | 10.0% |
| !! | CAAAAATATGATTATATATT+TGG | + | chr6_3:6366337-6366356 | Msa0935740:intron | 10.0% |
| !! | TAAATAATATGTAAATTCAA+TGG | - | chr6_3:6366433-6366452 | None:intergenic | 10.0% |
| !! | ATATATAAATTCAAAATTCT+TGG | - | chr6_3:6366914-6366933 | None:intergenic | 10.0% |
| !! | TAAATCAAGAAGAAAAAAAT+TGG | - | chr6_3:6364885-6364904 | None:intergenic | 15.0% |
| !! | AAAATTAGTAATGTGATATT+TGG | + | chr6_3:6365740-6365759 | Msa0935740:intron | 15.0% |
| !!! | ATATAATAGTTTTAGATGTT+TGG | + | chr6_3:6366282-6366301 | Msa0935740:intron | 15.0% |
| !!! | TTTTTAATTCACATATATTG+TGG | + | chr6_3:6366470-6366489 | Msa0935740:intron | 15.0% |
| !!! | AAAATTTTGATTTTCATTTC+TGG | + | chr6_3:6367018-6367037 | Msa0935740:three_prime_UTR | 15.0% |
| !!! | AAATTTTGATTTTCATTTCT+GGG | + | chr6_3:6367019-6367038 | Msa0935740:three_prime_UTR | 15.0% |
| !! | AAAAATGCTTAGAAGAAAAA+TGG | - | chr6_3:6364724-6364743 | None:intergenic | 20.0% |
| !! | AACATATTTATCTACTTAGA+AGG | + | chr6_3:6364801-6364820 | Msa0935740:intron | 20.0% |
| !! | TATAATATATCTTTATGTGC+AGG | + | chr6_3:6364943-6364962 | Msa0935740:intron | 20.0% |
| !! | GAATCAAACAAAAATAGAAA+GGG | - | chr6_3:6365029-6365048 | None:intergenic | 20.0% |
| !!! | GTTGATCTGTTTTTTAATAA+AGG | - | chr6_3:6365204-6365223 | None:intergenic | 20.0% |
| !!! | ATAAAAATTAGAAGTATGGT+AGG | - | chr6_3:6365395-6365414 | None:intergenic | 20.0% |
| !! | TTGACAAAATTATCGTAATA+TGG | - | chr6_3:6365512-6365531 | None:intergenic | 20.0% |
| !!! | TTGAATAGTAGTTAATGTTT+TGG | - | chr6_3:6365567-6365586 | None:intergenic | 20.0% |
| !!! | CATCTAAAACTATTATATTG+TGG | - | chr6_3:6366280-6366299 | None:intergenic | 20.0% |
| !!! | TAACTTTTTTGCTCTTTTTT+TGG | + | chr6_3:6366362-6366381 | Msa0935740:intron | 20.0% |
| !!! | AAACCTGTATTTTTATTTTG+TGG | + | chr6_3:6366558-6366577 | Msa0935740:intron | 20.0% |
| !!! | AACCTGTATTTTTATTTTGT+GGG | + | chr6_3:6366559-6366578 | Msa0935740:intron | 20.0% |
| !!! | ATGGAAATATATTTTGCTAT+TGG | + | chr6_3:6366954-6366973 | Msa0935740:three_prime_UTR | 20.0% |
| ! | TTACAATTATATAGAGGTCA+AGG | - | chr6_3:6364604-6364623 | None:intergenic | 25.0% |
| !!! | CTAGTCTTACAATTATATAG+AGG | - | chr6_3:6364610-6364629 | None:intergenic | 25.0% |
| ! | ATATTTATCTACTTAGAAGG+TGG | + | chr6_3:6364804-6364823 | Msa0935740:intron | 25.0% |
| ! | GGAATCAAACAAAAATAGAA+AGG | - | chr6_3:6365030-6365049 | None:intergenic | 25.0% |
| ! | TTCTGATAAGGATGTTTAAA+GGG | - | chr6_3:6365051-6365070 | None:intergenic | 25.0% |
| ! | TTTCTGATAAGGATGTTTAA+AGG | - | chr6_3:6365052-6365071 | None:intergenic | 25.0% |
| ! | TAAGAAAGAACTTTCTGATA+AGG | - | chr6_3:6365063-6365082 | None:intergenic | 25.0% |
| ! | AGTTAGAGAAAAGAGAAATT+AGG | + | chr6_3:6365258-6365277 | Msa0935740:intron | 25.0% |
| !! | TCTAAAACTAAAAAGACCAA+TGG | + | chr6_3:6365287-6365306 | Msa0935740:intron | 25.0% |
| !! | TCTTTTCTATATCTTTCCAT+TGG | - | chr6_3:6365306-6365325 | None:intergenic | 25.0% |
| !!! | AAAAATCCTTGTTTGTTATG+AGG | - | chr6_3:6365458-6365477 | None:intergenic | 25.0% |
| !! | AAATATGAAGTGTTACGTTA+TGG | - | chr6_3:6365540-6365559 | None:intergenic | 25.0% |
| ! | ATCAAAGAAAGACATAGAAA+TGG | - | chr6_3:6366204-6366223 | None:intergenic | 25.0% |
| !!! | TGTTTGGCATAAAACTTTTT+TGG | + | chr6_3:6366298-6366317 | Msa0935740:intron | 25.0% |
| ! | TATGTACAAGTTACAAAGTT+AGG | - | chr6_3:6366407-6366426 | None:intergenic | 25.0% |
| ! | TGAGAAGTAGTGATTAATAT+CGG | + | chr6_3:6366504-6366523 | Msa0935740:intron | 25.0% |
| ! | ATATTTGCACCTATATCTAA+TGG | + | chr6_3:6366776-6366795 | Msa0935740:three_prime_UTR | 25.0% |
| ! | GAAATTAAATGGTATTGTCA+TGG | + | chr6_3:6366935-6366954 | Msa0935740:three_prime_UTR | 25.0% |
| !!! | TATTTTGCTATTGGAAATTC+AGG | + | chr6_3:6366963-6366982 | Msa0935740:three_prime_UTR | 25.0% |
| GAGTAAAGATTATACCTTAG+TGG | - | chr6_3:6364757-6364776 | None:intergenic | 30.0% | |
| TTTCTCTAACTTAGAACAAG+AGG | - | chr6_3:6365249-6365268 | None:intergenic | 30.0% | |
| GAGTGAATTTGACAAAATCA+CGG | - | chr6_3:6365666-6365685 | None:intergenic | 30.0% | |
| TAAGGTGGTGATTTAACTAA+AGG | - | chr6_3:6365849-6365868 | None:intergenic | 30.0% | |
| TGCCCACAAAATAAAAATAC+AGG | - | chr6_3:6366564-6366583 | None:intergenic | 30.0% | |
| TATGGTAACAGAGAAAAATG+TGG | + | chr6_3:6366695-6366714 | Msa0935740:CDS | 30.0% | |
| ATATGTATCTATGGACACTT+GGG | - | chr6_3:6366758-6366777 | None:intergenic | 30.0% | |
| TATATGTATCTATGGACACT+TGG | - | chr6_3:6366759-6366778 | None:intergenic | 30.0% | |
| GGTGCAAATATATGTATCTA+TGG | - | chr6_3:6366767-6366786 | None:intergenic | 30.0% | |
| GCTTAGAAACCATTAGATAT+AGG | - | chr6_3:6366788-6366807 | None:intergenic | 30.0% | |
| ACGTAATATTATGATCCTTG+TGG | + | chr6_3:6366887-6366906 | Msa0935740:three_prime_UTR | 30.0% | |
| !!! | TGAAGCCATTTTTTGAAGCA+GGG | - | chr6_3:6364697-6364716 | None:intergenic | 35.0% |
| !!! | TTGAAGCCATTTTTTGAAGC+AGG | - | chr6_3:6364698-6364717 | None:intergenic | 35.0% |
| TGATGAAGATCTCAAGATAG+TGG | + | chr6_3:6364976-6364995 | Msa0935740:CDS | 35.0% | |
| TTATGAGGTTAGGGAAATGT+CGG | - | chr6_3:6365443-6365462 | None:intergenic | 35.0% | |
| !! | CCTTGTTTGTTATGAGGTTA+GGG | - | chr6_3:6365452-6365471 | None:intergenic | 35.0% |
| !! | TCCTTGTTTGTTATGAGGTT+AGG | - | chr6_3:6365453-6365472 | None:intergenic | 35.0% |
| TCTCGTCTATAGTAAAATCG+CGG | - | chr6_3:6365613-6365632 | None:intergenic | 35.0% | |
| TTGACAAAATCACGGTAACA+TGG | - | chr6_3:6365658-6365677 | None:intergenic | 35.0% | |
| TACAATGAGCGTTTAGAAGT+TGG | + | chr6_3:6365692-6365711 | Msa0935740:intron | 35.0% | |
| !! | AGTAATGTGATATTTGGTGC+AGG | + | chr6_3:6365746-6365765 | Msa0935740:intron | 35.0% |
| GATTTAACTAAAGGTGGTGT+TGG | - | chr6_3:6365840-6365859 | None:intergenic | 35.0% | |
| ACAATAGGTGGTGATTGATA+TGG | - | chr6_3:6365945-6365964 | None:intergenic | 35.0% | |
| TCAATCACCACCTATTGTAA+AGG | + | chr6_3:6365947-6365966 | Msa0935740:CDS | 35.0% | |
| ACTATAGGTGGTGATTGATA+AGG | - | chr6_3:6366050-6366069 | None:intergenic | 35.0% | |
| !!! | TAAGGAGGTGTTTTCACTAT+AGG | - | chr6_3:6366095-6366114 | None:intergenic | 35.0% |
| !! | ACTATTGGTGGTGATTGATA+AGG | - | chr6_3:6366113-6366132 | None:intergenic | 35.0% |
| CATGATTTGACTATTGGAGT+AGG | - | chr6_3:6366164-6366183 | None:intergenic | 35.0% | |
| CTACTCCAATAGTCAAATCA+TGG | + | chr6_3:6366162-6366181 | Msa0935740:CDS | 35.0% | |
| TCCAATAGTCAAATCATGGA+AGG | + | chr6_3:6366166-6366185 | Msa0935740:CDS | 35.0% | |
| CCAATAGTCAAATCATGGAA+GGG | + | chr6_3:6366167-6366186 | Msa0935740:CDS | 35.0% | |
| !!! | CTCTTTTTTTGGTACTAGAG+AGG | + | chr6_3:6366373-6366392 | Msa0935740:intron | 35.0% |
| AAGTTACAAAGTTAGGCATG+TGG | - | chr6_3:6366400-6366419 | None:intergenic | 35.0% | |
| ATAGGTGGCAAAAACATTCT+AGG | + | chr6_3:6366606-6366625 | Msa0935740:CDS | 35.0% | |
| TTCAAAATTCTTGGACCACA+AGG | - | chr6_3:6366905-6366924 | None:intergenic | 35.0% | |
| ! | TTCATTTCTGGGAAGTAAGT+AGG | + | chr6_3:6367030-6367049 | Msa0935740:three_prime_UTR | 35.0% |
| CTTGTCCCTGCTTCAAAAAA+TGG | + | chr6_3:6364689-6364708 | Msa0935740:exon | 40.0% | |
| CCCTAACCTCATAACAAACA+AGG | + | chr6_3:6365449-6365468 | Msa0935740:intron | 40.0% | |
| ! | TTAACTAAAGGTGGTGTTGG+TGG | - | chr6_3:6365837-6365856 | None:intergenic | 40.0% |
| GGTGGTGATTTAACTAAAGG+TGG | - | chr6_3:6365846-6365865 | None:intergenic | 40.0% | |
| ! | TTCACTGGTGGTGATTGATA+AGG | - | chr6_3:6365867-6365886 | None:intergenic | 40.0% |
| GATTTCACAATAGGTGGTGT+TGG | - | chr6_3:6365891-6365910 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACAAT+AGG | - | chr6_3:6365900-6365919 | None:intergenic | 40.0% | |
| ! | TATGGTGGTGATTTCACCAA+TGG | - | chr6_3:6365927-6365946 | None:intergenic | 40.0% |
| ATAGGTGGTGATTGATATGG+TGG | - | chr6_3:6365942-6365961 | None:intergenic | 40.0% | |
| GATTTCACAATAGGTGGTGT+TGG | - | chr6_3:6365891-6365910 | None:intergenic | 40.0% | |
| GAAGGAGGTGATTTCACAAT+AGG | - | chr6_3:6365900-6365919 | None:intergenic | 40.0% | |
| ! | TAAGGTGGTGTTTTCACCAA+AGG | - | chr6_3:6366032-6366051 | None:intergenic | 40.0% |
| ATAGGTGGTGATTGATAAGG+TGG | - | chr6_3:6366047-6366066 | None:intergenic | 40.0% | |
| TCAATCACCACCTATAGTGA+AGG | + | chr6_3:6366052-6366071 | Msa0935740:CDS | 40.0% | |
| !! | ATTGGTGGTGATTGATAAGG+AGG | - | chr6_3:6366110-6366129 | None:intergenic | 40.0% |
| !! | ACTGGTGGTTTTACTATTGG+TGG | - | chr6_3:6366125-6366144 | None:intergenic | 40.0% |
| !! | GCAACTGGTGGTTTTACTAT+TGG | - | chr6_3:6366128-6366147 | None:intergenic | 40.0% |
| GATTTGACTATTGGAGTAGG+TGG | - | chr6_3:6366161-6366180 | None:intergenic | 40.0% | |
| CCCTTCCATGATTTGACTAT+TGG | - | chr6_3:6366170-6366189 | None:intergenic | 40.0% | |
| GCATTCCACTATGTGGTTAT+AGG | + | chr6_3:6366588-6366607 | Msa0935740:CDS | 40.0% | |
| TTCCACTATGTGGTTATAGG+TGG | + | chr6_3:6366591-6366610 | Msa0935740:CDS | 40.0% | |
| TGTTACCATAAGTTCCTGGA+GGG | - | chr6_3:6366685-6366704 | None:intergenic | 40.0% | |
| TCTCTGTTACCATAAGTTCC+TGG | - | chr6_3:6366689-6366708 | None:intergenic | 40.0% | |
| TGGCAAGTGTTACACTGATA+TGG | + | chr6_3:6366715-6366734 | Msa0935740:CDS | 40.0% | |
| TACACTGATATGGTGACTCA+TGG | + | chr6_3:6366725-6366744 | Msa0935740:CDS | 40.0% | |
| GTGTCAAGAGCTATCTAGTG+AGG | - | chr6_3:6364655-6364674 | None:intergenic | 45.0% | |
| GAAGCAGGGACAAGAAAGTA+TGG | - | chr6_3:6364683-6364702 | None:intergenic | 45.0% | |
| ! | TTTTCTTGTGCTCGCCACTA+AGG | + | chr6_3:6364740-6364759 | Msa0935740:CDS | 45.0% |
| !! | GGTGTTACTATAGGACTTGG+TGG | - | chr6_3:6365795-6365814 | None:intergenic | 45.0% |
| !! | GGTGGTGTTACTATAGGACT+TGG | - | chr6_3:6365798-6365817 | None:intergenic | 45.0% |
| !! | GGAGAAGGTGGTGTTACTAT+AGG | - | chr6_3:6365804-6365823 | None:intergenic | 45.0% |
| ! | ACTGGTGGTGATTGATAAGG+TGG | - | chr6_3:6365864-6365883 | None:intergenic | 45.0% |
| !! | ATAGGTGGTGTTGGTTTCAC+TGG | - | chr6_3:6365882-6365901 | None:intergenic | 45.0% |
| GGAGGTGATTTCACAATAGG+TGG | - | chr6_3:6365897-6365916 | None:intergenic | 45.0% | |
| ! | GATTTCACCAATGGTGGTGA+AGG | - | chr6_3:6365918-6365937 | None:intergenic | 45.0% |
| !! | GAAGGTGCCTTTACAATAGG+TGG | - | chr6_3:6365957-6365976 | None:intergenic | 45.0% |
| !! | GGAGAAGGTGCCTTTACAAT+AGG | - | chr6_3:6365960-6365979 | None:intergenic | 45.0% |
| GGAGGTGATTTCACAATAGG+TGG | - | chr6_3:6365897-6365916 | None:intergenic | 45.0% | |
| ! | GTTTTCACCAAAGGAGGAGA+AGG | - | chr6_3:6366023-6366042 | None:intergenic | 45.0% |
| TTCACTATAGGTGGAGGAGT+TGG | - | chr6_3:6366083-6366102 | None:intergenic | 45.0% | |
| ! | GGTGTTTTCACTATAGGTGG+AGG | - | chr6_3:6366089-6366108 | None:intergenic | 45.0% |
| !!! | GGAGGTGTTTTCACTATAGG+TGG | - | chr6_3:6366092-6366111 | None:intergenic | 45.0% |
| TTGACTATTGGAGTAGGTGG+TGG | - | chr6_3:6366158-6366177 | None:intergenic | 45.0% | |
| GCAGATTGCATTCCACTATG+TGG | + | chr6_3:6366581-6366600 | Msa0935740:intron | 45.0% | |
| TGCCACCTATAACCACATAG+TGG | - | chr6_3:6366596-6366615 | None:intergenic | 45.0% | |
| !! | CATGCATGACTTGTTGTGAC+CGG | + | chr6_3:6366648-6366667 | Msa0935740:CDS | 45.0% |
| CTGTTACCATAAGTTCCTGG+AGG | - | chr6_3:6366686-6366705 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTAAAGAAAATT+AGG | + | chr6_3:6365472-6365491 | Msa0935740:intron | 5.0% |
| !! | ATTTATATATTGAAATTAAA+TGG | + | chr6_3:6366924-6366943 | Msa0935740:three_prime_UTR | 5.0% |
| !! | TAGGACTTGGTGGAGCTGTA+GGG | - | chr6_3:6365785-6365804 | None:intergenic | 50.0% |
| !! | ATAGGACTTGGTGGAGCTGT+AGG | - | chr6_3:6365786-6365805 | None:intergenic | 50.0% |
| AACACCACCTTCTCCAGTGA+AGG | + | chr6_3:6365809-6365828 | Msa0935740:CDS | 50.0% | |
| ATCACCTCCTTCACCACCAT+TGG | + | chr6_3:6365908-6365927 | Msa0935740:CDS | 50.0% | |
| ! | TTCACCAATGGTGGTGAAGG+AGG | - | chr6_3:6365915-6365934 | None:intergenic | 50.0% |
| GGTGGTGATTTCACCAATGG+TGG | - | chr6_3:6365924-6365943 | None:intergenic | 50.0% | |
| GGTTTCACTAGAGGAGGAGA+AGG | - | chr6_3:6365975-6365994 | None:intergenic | 50.0% | |
| !! | GGTGTTGGTTTCACTAGAGG+AGG | - | chr6_3:6365981-6366000 | None:intergenic | 50.0% |
| !! | GGTGGTGTTGGTTTCACTAG+AGG | - | chr6_3:6365984-6366003 | None:intergenic | 50.0% |
| ATCACCTCCTTCTCCTCCTT+TGG | + | chr6_3:6366013-6366032 | Msa0935740:CDS | 50.0% | |
| TTCACCAAAGGAGGAGAAGG+AGG | - | chr6_3:6366020-6366039 | None:intergenic | 50.0% | |
| ! | GGTGGTGTTTTCACCAAAGG+AGG | - | chr6_3:6366029-6366048 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGCCTTCACTAT+AGG | - | chr6_3:6366065-6366084 | None:intergenic | 50.0% |
| ACTATAGGTGGAGGAGTTGG+TGG | - | chr6_3:6366080-6366099 | None:intergenic | 50.0% | |
| !! | ATTGGAGTAGGTGGTGGAGA+TGG | - | chr6_3:6366152-6366171 | None:intergenic | 50.0% |
| TGTGTCCCTCCAGGAACTTA+TGG | + | chr6_3:6366677-6366696 | Msa0935740:CDS | 50.0% | |
| !! | GGTGGTGTTGGTTTCACTGG+TGG | - | chr6_3:6365879-6365898 | None:intergenic | 55.0% |
| GGTGGTGCCTTCACTATAGG+TGG | - | chr6_3:6366062-6366081 | None:intergenic | 55.0% | |
| CTGGAGGGACACATTTGCAC+CGG | - | chr6_3:6366670-6366689 | None:intergenic | 55.0% | |
| GGTGCCTTCACTGGAGAAGG+TGG | - | chr6_3:6365816-6365835 | None:intergenic | 60.0% | |
| GGTGGTGCCTTCACTGGAGA+AGG | - | chr6_3:6365819-6365838 | None:intergenic | 60.0% | |
| !! | GGTGTTGGTGGTGCCTTCAC+TGG | - | chr6_3:6365825-6365844 | None:intergenic | 60.0% |
| GGTGGAGATGGAGCAACTGG+TGG | - | chr6_3:6366140-6366159 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAGATGGAGCAAC+TGG | - | chr6_3:6366143-6366162 | None:intergenic | 60.0% |
| CGGTGCAAATGTGTCCCTCC+AGG | + | chr6_3:6366668-6366687 | Msa0935740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6364601 | 6367070 | 6364601 | ID=Msa0935740;Name=Msa0935740 |
| chr6_3 | mRNA | 6364601 | 6367070 | 6364601 | ID=Msa0935740-mRNA-1;Parent=Msa0935740;Name=Msa0935740-mRNA-1;_AED=0.29;_eAED=0.29;_QI=107|1|1|1|1|1|4|301|230 |
| chr6_3 | exon | 6364601 | 6364761 | 6364601 | ID=Msa0935740-mRNA-1:exon:2030;Parent=Msa0935740-mRNA-1 |
| chr6_3 | exon | 6364965 | 6364997 | 6364965 | ID=Msa0935740-mRNA-1:exon:2031;Parent=Msa0935740-mRNA-1 |
| chr6_3 | exon | 6365768 | 6366188 | 6365768 | ID=Msa0935740-mRNA-1:exon:2032;Parent=Msa0935740-mRNA-1 |
| chr6_3 | exon | 6366585 | 6367070 | 6366585 | ID=Msa0935740-mRNA-1:exon:2033;Parent=Msa0935740-mRNA-1 |
| chr6_3 | five_prime_UTR | 6364601 | 6364707 | 6364601 | ID=Msa0935740-mRNA-1:five_prime_utr;Parent=Msa0935740-mRNA-1 |
| chr6_3 | CDS | 6364708 | 6364761 | 6364708 | ID=Msa0935740-mRNA-1:cds;Parent=Msa0935740-mRNA-1 |
| chr6_3 | CDS | 6364965 | 6364997 | 6364965 | ID=Msa0935740-mRNA-1:cds;Parent=Msa0935740-mRNA-1 |
| chr6_3 | CDS | 6365768 | 6366188 | 6365768 | ID=Msa0935740-mRNA-1:cds;Parent=Msa0935740-mRNA-1 |
| chr6_3 | CDS | 6366585 | 6366769 | 6366585 | ID=Msa0935740-mRNA-1:cds;Parent=Msa0935740-mRNA-1 |
| chr6_3 | three_prime_UTR | 6366770 | 6367070 | 6366770 | ID=Msa0935740-mRNA-1:three_prime_utr;Parent=Msa0935740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
