AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569980 MtrunA17_Chr8g0385271 95.982 224 9 0 1 224 1 224 4.06e-159 451
Msa0569980 MtrunA17_Chr3g0131031 76.884 199 46 0 25 223 25 223 1.25e-104 312
Msa0569980 MtrunA17_Chr3g0135611 74.336 113 29 0 111 223 92 204 3.42e-56 185
Msa0569980 MtrunA17_Chr4g0008821 73.451 113 30 0 111 223 95 207 7.41e-56 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569980 AT2G30390.1 74.026 154 28 2 82 223 56 209 6.44e-71 225
Msa0569980 AT2G30390.2 74.026 154 28 2 82 223 56 209 1.08e-70 224
Msa0569980 AT5G26030.1 73.043 115 31 0 109 223 84 198 1.97e-57 189
Msa0569980 AT5G26030.2 73.043 115 31 0 109 223 84 198 1.97e-57 189

Find 76 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCTGATTCCCACAAAT+TGG 0.162122 4_1:+72015559 None:intergenic
GCATAGCCTTCTTTGCTCTT+TGG 0.251316 4_1:+72014604 None:intergenic
GTATCTGATACGCCTCTTAT+TGG 0.284907 4_1:-72014897 Msa0569980:CDS
CTTCCCAATTTGTGGGAATC+AGG 0.307005 4_1:-72015563 Msa0569980:intron
CCATTGAAAACTTGCATTGT+TGG 0.321899 4_1:-72015026 Msa0569980:CDS
TGTATGTTGGCATGCGTTAC+TGG 0.324474 4_1:-72014137 Msa0569980:CDS
CTAAAGCTCCCACAGGTAAA+AGG 0.335562 4_1:+72014940 None:intergenic
GAAGTTGAAGGGGCACGAAT+TGG 0.396096 4_1:+72015391 None:intergenic
TGACCCATCTTCCCAATTTG+TGG 0.438375 4_1:-72015571 Msa0569980:five_prime_UTR
TTACCTGATTCCCACAAATT+GGG 0.451114 4_1:+72015560 None:intergenic
TACCAGCTCAATAGCCTCTT+CGG 0.451215 4_1:+72014104 None:intergenic
TTTCCAAGCAATCACTCAAC+AGG 0.455055 4_1:-72014965 Msa0569980:CDS
GTATTACTGGATCGGCAAAA+AGG 0.455393 4_1:+72014796 None:intergenic
ATTCCCACAAATTGGGAAGA+TGG 0.464811 4_1:+72015567 None:intergenic
CAAAAGGTGTATCGATGCTC+TGG 0.467208 4_1:-72015080 Msa0569980:CDS
GTGTTATTGTTGAACCTTGG+AGG 0.476838 4_1:-72014858 Msa0569980:CDS
TGCACATCATCTAGAGTCTC+TGG 0.484642 4_1:+72014834 None:intergenic
ATGGTCTGAAGCACAACCCT+TGG 0.489226 4_1:-72014988 Msa0569980:CDS
TGAAGAAAACTAAATAACCT+TGG 0.490599 4_1:+72014664 None:intergenic
GTAGTTGAAGGACAAGTTAG+TGG 0.501213 4_1:-72015446 Msa0569980:five_prime_UTR
GAAGGCTATGCTTCCATTGG+TGG 0.502519 4_1:-72014592 Msa0569980:CDS
CAGATTTATTCTCAACCTCA+AGG 0.502681 4_1:-72015744 Msa0569980:five_prime_UTR
GCATCAGTCATGCGTCTAAG+AGG 0.503158 4_1:+72014562 None:intergenic
AGAGCACCAAAGAGCAAAGA+AGG 0.504484 4_1:-72014610 Msa0569980:CDS
GGCTATGCTTCCATTGGTGG+TGG 0.511065 4_1:-72014589 Msa0569980:CDS
ATCTTATCATCACCAATAAG+AGG 0.511634 4_1:+72014885 None:intergenic
TCAATAGCCTCTTCGGTGAA+TGG 0.511788 4_1:+72014111 None:intergenic
GGCAATCTGTACCACTCAAA+AGG 0.512114 4_1:-72015096 Msa0569980:CDS
GTGCCTGTTGAGTGATTGCT+TGG 0.517670 4_1:+72014962 None:intergenic
CCCTTGAGGTTGAGAGTGAC+TGG 0.520347 4_1:+72015792 None:intergenic
GACCCATCTTCCCAATTTGT+GGG 0.525868 4_1:-72015570 Msa0569980:five_prime_UTR
TGTATTTGTGCAGTAGTTGA+AGG 0.526133 4_1:-72015458 Msa0569980:intron
TTCCCACAAATTGGGAAGAT+GGG 0.528839 4_1:+72015568 None:intergenic
TATGAGCAAGAAGAAGTTGA+AGG 0.530273 4_1:+72015379 None:intergenic
CATCAGTCATGCGTCTAAGA+GGG 0.534210 4_1:+72014563 None:intergenic
GGAGTGTTATTGTTGAACCT+TGG 0.536999 4_1:-72014861 Msa0569980:CDS
ATTGTTGGCAAATTTACTCC+AGG 0.538933 4_1:-72015011 Msa0569980:CDS
CACCGAAGAGGCTATTGAGC+TGG 0.540788 4_1:-72014106 Msa0569980:intron
AAGAGGGGATCCACCACCAA+TGG 0.548779 4_1:+72014579 None:intergenic
CAGTGTTTAGTATGAAGTAA+TGG 0.549051 4_1:+72015656 None:intergenic
AAAGAAGGCTATGCTTCCAT+TGG 0.556763 4_1:-72014595 Msa0569980:CDS
GCACAAGTGCGGCAAGAATG+AGG 0.559654 4_1:+72015349 None:intergenic
GGTTGTGCTTCAGACCATCC+TGG 0.561646 4_1:+72014993 None:intergenic
ATGAGCAAGAAGAAGTTGAA+GGG 0.565066 4_1:+72015380 None:intergenic
ACCAGTCACTCTCAACCTCA+AGG 0.566849 4_1:-72015793 Msa0569980:five_prime_UTR
AGATTTATTCTCAACCTCAA+GGG 0.569252 4_1:-72015743 Msa0569980:five_prime_UTR
CTTATTGGTGATGATAAGAT+CGG 0.572457 4_1:-72014882 Msa0569980:CDS
TAGACGCATGACTGATGCAC+AGG 0.574150 4_1:-72014557 Msa0569980:intron
AAGTGAGAGTATTACTGGAT+CGG 0.579550 4_1:+72014788 None:intergenic
AAGATGGGTCACTAAGAAGA+AGG 0.584780 4_1:+72015583 None:intergenic
ATAAACAGAAATAGAAGAAG+AGG 0.584829 4_1:-72015836 Msa0569980:five_prime_UTR
TTGGCAAATTTACTCCAGGA+TGG 0.585479 4_1:-72015007 Msa0569980:CDS
GTCCCAGCAAAAGTGTATGT+TGG 0.593607 4_1:-72014150 Msa0569980:CDS
CTAGAGTCTCTGGACCTCCA+AGG 0.606445 4_1:+72014844 None:intergenic
AATATGAGTAGAGCAGAGAG+AGG 0.611494 4_1:+72015718 None:intergenic
AATATGAGTAGAGCAGAGAG+AGG 0.611494 4_1:+72015767 None:intergenic
GAAGTTACTAAAGCTCCCAC+AGG 0.611643 4_1:+72014933 None:intergenic
ACAGATACAAATTGAGCCAG+TGG 0.614604 4_1:+72014637 None:intergenic
AGTGATTGCTTGGAAACCAA+GGG 0.631296 4_1:+72014972 None:intergenic
CCAGTCACTCTCAACCTCAA+GGG 0.639701 4_1:-72015792 Msa0569980:five_prime_UTR
ATGCTCTGGAGGCCGCACGG+AGG 0.647600 4_1:-72015066 Msa0569980:CDS
TCGATGCTCTGGAGGCCGCA+CGG 0.648209 4_1:-72015069 Msa0569980:CDS
ATATGAGTAGAGCAGAGAGA+GGG 0.653047 4_1:+72015719 None:intergenic
ATATGAGTAGAGCAGAGAGA+GGG 0.653047 4_1:+72015768 None:intergenic
TGAGCAAGAAGAAGTTGAAG+GGG 0.653348 4_1:+72015381 None:intergenic
CTGGCATCCATTCACCGAAG+AGG 0.654462 4_1:-72014118 Msa0569980:CDS
ATCAGTCATGCGTCTAAGAG+GGG 0.658159 4_1:+72014564 None:intergenic
AAGGTGTATCGATGCTCTGG+AGG 0.658242 4_1:-72015077 Msa0569980:CDS
ATGGGTCACTAAGAAGAAGG+TGG 0.658723 4_1:+72015586 None:intergenic
AGGATATCATACGATTGCCA+AGG 0.659302 4_1:-72014681 Msa0569980:CDS
AGCAGAGAGAGGGACCCTTG+AGG 0.661068 4_1:+72015729 None:intergenic
AGCAGAGAGAGGGACCCTTG+AGG 0.661068 4_1:+72015778 None:intergenic
GAGTGATTGCTTGGAAACCA+AGG 0.662624 4_1:+72014971 None:intergenic
TGAGTGGTACAGATTGCCTG+TGG 0.695911 4_1:+72015101 None:intergenic
AATTACGAGAAGCACAAGTG+CGG 0.707850 4_1:+72015338 None:intergenic
CGTTACTAGAAGCCTCCGTG+CGG 0.803782 4_1:+72015054 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAAAAATAAAGAATATT+AGG + chr4_1:72014708-72014727 None:intergenic 10.0%
!!! CTAATATTCTTTATTTTTAT+AGG - chr4_1:72014706-72014725 Msa0569980:intron 10.0%
!! CTATAAAAATAAAGAATATT+AGG + chr4_1:72014708-72014727 None:intergenic 10.0%
!!! CTAATATTCTTTATTTTTAT+AGG - chr4_1:72014706-72014725 Msa0569980:intron 10.0%
!!! ATGAAGAATTTTTTCTTTTA+GGG + chr4_1:72014223-72014242 None:intergenic 15.0%
!!! AATGAAGAATTTTTTCTTTT+AGG + chr4_1:72014224-72014243 None:intergenic 15.0%
!! AATAACCTTAGTAAAATATT+TGG + chr4_1:72014586-72014605 None:intergenic 15.0%
!! TAGTGAGAATTTAAAAAAAA+TGG + chr4_1:72015464-72015483 None:intergenic 15.0%
!!! ATGAAGAATTTTTTCTTTTA+GGG + chr4_1:72014223-72014242 None:intergenic 15.0%
!!! AATGAAGAATTTTTTCTTTT+AGG + chr4_1:72014224-72014243 None:intergenic 15.0%
!! AATAACCTTAGTAAAATATT+TGG + chr4_1:72014586-72014605 None:intergenic 15.0%
!! TAGTGAGAATTTAAAAAAAA+TGG + chr4_1:72015464-72015483 None:intergenic 15.0%
!!! TTTTTCATGAATCAATTTCT+GGG - chr4_1:72014309-72014328 Msa0569980:intron 20.0%
!! AACACAATAACAATTGAAAA+AGG + chr4_1:72014546-72014565 None:intergenic 20.0%
!!! AGTAACCAAATATTTTACTA+AGG - chr4_1:72014578-72014597 Msa0569980:CDS 20.0%
!! TATACAGAAAATGTAACTAA+CGG + chr4_1:72015128-72015147 None:intergenic 20.0%
!! TTTAAAAAAAATGGCTTGAA+CGG + chr4_1:72015455-72015474 None:intergenic 20.0%
!! TAAAAATACATCACTAAAAG+TGG + chr4_1:72015816-72015835 None:intergenic 20.0%
!!! GATGTATTTTTACAAGTTTT+AGG - chr4_1:72015824-72015843 Msa0569980:five_prime_UTR 20.0%
!!! TTTTTCATGAATCAATTTCT+GGG - chr4_1:72014309-72014328 Msa0569980:intron 20.0%
!! AACACAATAACAATTGAAAA+AGG + chr4_1:72014546-72014565 None:intergenic 20.0%
!!! AGTAACCAAATATTTTACTA+AGG - chr4_1:72014578-72014597 Msa0569980:CDS 20.0%
!! TATACAGAAAATGTAACTAA+CGG + chr4_1:72015128-72015147 None:intergenic 20.0%
!! TTTAAAAAAAATGGCTTGAA+CGG + chr4_1:72015455-72015474 None:intergenic 20.0%
!! TAAAAATACATCACTAAAAG+TGG + chr4_1:72015816-72015835 None:intergenic 20.0%
!!! GATGTATTTTTACAAGTTTT+AGG - chr4_1:72015824-72015843 Msa0569980:five_prime_UTR 20.0%
! ATAAACAGAAATAGAAGAAG+AGG - chr4_1:72014000-72014019 Msa0569980:intron 25.0%
!! CAGAAATTGATTCATGAAAA+AGG + chr4_1:72014310-72014329 None:intergenic 25.0%
!!! CTTTTTCATGAATCAATTTC+TGG - chr4_1:72014308-72014327 Msa0569980:intron 25.0%
! TTGTTTGTAGTTTAGTTGAT+AGG - chr4_1:72014608-72014627 Msa0569980:CDS 25.0%
! GCAAAAAGGTTAAACAAAAA+AGG + chr4_1:72015029-72015048 None:intergenic 25.0%
!! CATTTTCTGTATAATTATGC+AGG - chr4_1:72015135-72015154 Msa0569980:intron 25.0%
! TGAAGAAAACTAAATAACCT+TGG + chr4_1:72015175-72015194 None:intergenic 25.0%
! AAAAACAGCAATTATATGAG+AGG + chr4_1:72015428-72015447 None:intergenic 25.0%
! AGTCAATTGTAAAATCTCAA+TGG + chr4_1:72015489-72015508 None:intergenic 25.0%
!! CTTTTTCTAATACTATGATG+CGG - chr4_1:72015539-72015558 Msa0569980:intron 25.0%
! GTTAGATTACAATGTCAAAT+TGG - chr4_1:72015769-72015788 Msa0569980:five_prime_UTR 25.0%
!!! GTATTTTTACAAGTTTTAGG+AGG - chr4_1:72015827-72015846 Msa0569980:five_prime_UTR 25.0%
! ATAAACAGAAATAGAAGAAG+AGG - chr4_1:72014000-72014019 Msa0569980:intron 25.0%
!! CAGAAATTGATTCATGAAAA+AGG + chr4_1:72014310-72014329 None:intergenic 25.0%
!!! CTTTTTCATGAATCAATTTC+TGG - chr4_1:72014308-72014327 Msa0569980:intron 25.0%
! TTGTTTGTAGTTTAGTTGAT+AGG - chr4_1:72014608-72014627 Msa0569980:CDS 25.0%
! GCAAAAAGGTTAAACAAAAA+AGG + chr4_1:72015029-72015048 None:intergenic 25.0%
!! CATTTTCTGTATAATTATGC+AGG - chr4_1:72015135-72015154 Msa0569980:intron 25.0%
! TGAAGAAAACTAAATAACCT+TGG + chr4_1:72015175-72015194 None:intergenic 25.0%
! AAAAACAGCAATTATATGAG+AGG + chr4_1:72015428-72015447 None:intergenic 25.0%
! AGTCAATTGTAAAATCTCAA+TGG + chr4_1:72015489-72015508 None:intergenic 25.0%
!! CTTTTTCTAATACTATGATG+CGG - chr4_1:72015539-72015558 Msa0569980:intron 25.0%
! GTTAGATTACAATGTCAAAT+TGG - chr4_1:72015769-72015788 Msa0569980:five_prime_UTR 25.0%
!!! GTATTTTTACAAGTTTTAGG+AGG - chr4_1:72015827-72015846 Msa0569980:five_prime_UTR 25.0%
AGATTTATTCTCAACCTCAA+GGG - chr4_1:72014093-72014112 Msa0569980:intron 30.0%
CAGTGTTTAGTATGAAGTAA+TGG + chr4_1:72014183-72014202 None:intergenic 30.0%
ATCTTATCATCACCAATAAG+AGG + chr4_1:72014954-72014973 None:intergenic 30.0%
!! CTTATTGGTGATGATAAGAT+CGG - chr4_1:72014954-72014973 Msa0569980:CDS 30.0%
GTGTACAGAAAAAAGTTATC+AGG + chr4_1:72015315-72015334 None:intergenic 30.0%
TGACTTTCGAATTGTTAGAT+AGG - chr4_1:72015346-72015365 Msa0569980:CDS 30.0%
GACTTTCGAATTGTTAGATA+GGG - chr4_1:72015347-72015366 Msa0569980:CDS 30.0%
TACGAACTAAATTCAGTATC+TGG + chr4_1:72015396-72015415 None:intergenic 30.0%
! CTGATAATGATTCTCTATAC+AGG - chr4_1:72015628-72015647 Msa0569980:five_prime_UTR 30.0%
AGATTTATTCTCAACCTCAA+GGG - chr4_1:72014093-72014112 Msa0569980:intron 30.0%
CAGTGTTTAGTATGAAGTAA+TGG + chr4_1:72014183-72014202 None:intergenic 30.0%
ATCTTATCATCACCAATAAG+AGG + chr4_1:72014954-72014973 None:intergenic 30.0%
!! CTTATTGGTGATGATAAGAT+CGG - chr4_1:72014954-72014973 Msa0569980:CDS 30.0%
GTGTACAGAAAAAAGTTATC+AGG + chr4_1:72015315-72015334 None:intergenic 30.0%
TGACTTTCGAATTGTTAGAT+AGG - chr4_1:72015346-72015365 Msa0569980:CDS 30.0%
GACTTTCGAATTGTTAGATA+GGG - chr4_1:72015347-72015366 Msa0569980:CDS 30.0%
TACGAACTAAATTCAGTATC+TGG + chr4_1:72015396-72015415 None:intergenic 30.0%
! CTGATAATGATTCTCTATAC+AGG - chr4_1:72015628-72015647 Msa0569980:five_prime_UTR 30.0%
CAGATTTATTCTCAACCTCA+AGG - chr4_1:72014092-72014111 Msa0569980:intron 35.0%
TTACCTGATTCCCACAAATT+GGG + chr4_1:72014279-72014298 None:intergenic 35.0%
TTTACCTGATTCCCACAAAT+TGG + chr4_1:72014280-72014299 None:intergenic 35.0%
TGTATTTGTGCAGTAGTTGA+AGG - chr4_1:72014378-72014397 Msa0569980:intron 35.0%
ATGAGCAAGAAGAAGTTGAA+GGG + chr4_1:72014459-72014478 None:intergenic 35.0%
TATGAGCAAGAAGAAGTTGA+AGG + chr4_1:72014460-72014479 None:intergenic 35.0%
TGAAAAAGGAACACTGACAT+AGG + chr4_1:72014532-72014551 None:intergenic 35.0%
GAAAAACACAATTTCACACG+AGG + chr4_1:72014654-72014673 None:intergenic 35.0%
! TTTTTATAGGCTATTGCCAC+AGG - chr4_1:72014719-72014738 Msa0569980:intron 35.0%
! CCAACAATGCAAGTTTTCAA+TGG + chr4_1:72014813-72014832 None:intergenic 35.0%
CCATTGAAAACTTGCATTGT+TGG - chr4_1:72014810-72014829 Msa0569980:CDS 35.0%
ATTGTTGGCAAATTTACTCC+AGG - chr4_1:72014825-72014844 Msa0569980:CDS 35.0%
!! AAGTGAGAGTATTACTGGAT+CGG + chr4_1:72015051-72015070 None:intergenic 35.0%
! TAGTTTTCTTCAAAAGCCAC+TGG - chr4_1:72015183-72015202 Msa0569980:intron 35.0%
CAATTCGAAAGTCAAATGTG+TGG + chr4_1:72015340-72015359 None:intergenic 35.0%
! GAATTGTTAGATAGGGCATT+TGG - chr4_1:72015354-72015373 Msa0569980:CDS 35.0%
AAAAAAATGGCTTGAACGGT+TGG + chr4_1:72015451-72015470 None:intergenic 35.0%
CAGATTTATTCTCAACCTCA+AGG - chr4_1:72014092-72014111 Msa0569980:intron 35.0%
TTACCTGATTCCCACAAATT+GGG + chr4_1:72014279-72014298 None:intergenic 35.0%
TTTACCTGATTCCCACAAAT+TGG + chr4_1:72014280-72014299 None:intergenic 35.0%
TGTATTTGTGCAGTAGTTGA+AGG - chr4_1:72014378-72014397 Msa0569980:intron 35.0%
ATGAGCAAGAAGAAGTTGAA+GGG + chr4_1:72014459-72014478 None:intergenic 35.0%
TATGAGCAAGAAGAAGTTGA+AGG + chr4_1:72014460-72014479 None:intergenic 35.0%
TGAAAAAGGAACACTGACAT+AGG + chr4_1:72014532-72014551 None:intergenic 35.0%
GAAAAACACAATTTCACACG+AGG + chr4_1:72014654-72014673 None:intergenic 35.0%
! TTTTTATAGGCTATTGCCAC+AGG - chr4_1:72014719-72014738 Msa0569980:intron 35.0%
! CCAACAATGCAAGTTTTCAA+TGG + chr4_1:72014813-72014832 None:intergenic 35.0%
CCATTGAAAACTTGCATTGT+TGG - chr4_1:72014810-72014829 Msa0569980:CDS 35.0%
ATTGTTGGCAAATTTACTCC+AGG - chr4_1:72014825-72014844 Msa0569980:CDS 35.0%
!! AAGTGAGAGTATTACTGGAT+CGG + chr4_1:72015051-72015070 None:intergenic 35.0%
! TAGTTTTCTTCAAAAGCCAC+TGG - chr4_1:72015183-72015202 Msa0569980:intron 35.0%
CAATTCGAAAGTCAAATGTG+TGG + chr4_1:72015340-72015359 None:intergenic 35.0%
! GAATTGTTAGATAGGGCATT+TGG - chr4_1:72015354-72015373 Msa0569980:CDS 35.0%
AAAAAAATGGCTTGAACGGT+TGG + chr4_1:72015451-72015470 None:intergenic 35.0%
ATATGAGTAGAGCAGAGAGA+GGG + chr4_1:72014071-72014090 None:intergenic 40.0%
AATATGAGTAGAGCAGAGAG+AGG + chr4_1:72014072-72014091 None:intergenic 40.0%
ATATGAGTAGAGCAGAGAGA+GGG + chr4_1:72014071-72014090 None:intergenic 40.0%
AATATGAGTAGAGCAGAGAG+AGG + chr4_1:72014072-72014091 None:intergenic 40.0%
AAGATGGGTCACTAAGAAGA+AGG + chr4_1:72014256-72014275 None:intergenic 40.0%
TTCCCACAAATTGGGAAGAT+GGG + chr4_1:72014271-72014290 None:intergenic 40.0%
ATTCCCACAAATTGGGAAGA+TGG + chr4_1:72014272-72014291 None:intergenic 40.0%
GTAGTTGAAGGACAAGTTAG+TGG - chr4_1:72014390-72014409 Msa0569980:intron 40.0%
TGAGCAAGAAGAAGTTGAAG+GGG + chr4_1:72014458-72014477 None:intergenic 40.0%
! AATTACGAGAAGCACAAGTG+CGG + chr4_1:72014501-72014520 None:intergenic 40.0%
TTGGCAAATTTACTCCAGGA+TGG - chr4_1:72014829-72014848 Msa0569980:CDS 40.0%
AGTGATTGCTTGGAAACCAA+GGG + chr4_1:72014867-72014886 None:intergenic 40.0%
TTTCCAAGCAATCACTCAAC+AGG - chr4_1:72014871-72014890 Msa0569980:CDS 40.0%
GTATCTGATACGCCTCTTAT+TGG - chr4_1:72014939-72014958 Msa0569980:CDS 40.0%
! GGAGTGTTATTGTTGAACCT+TGG - chr4_1:72014975-72014994 Msa0569980:CDS 40.0%
! GTGTTATTGTTGAACCTTGG+AGG - chr4_1:72014978-72014997 Msa0569980:CDS 40.0%
GTATTACTGGATCGGCAAAA+AGG + chr4_1:72015043-72015062 None:intergenic 40.0%
!! TGCTCAAGTGAGAGTATTAC+TGG + chr4_1:72015056-72015075 None:intergenic 40.0%
AGGATATCATACGATTGCCA+AGG - chr4_1:72015155-72015174 Msa0569980:intron 40.0%
ACAGATACAAATTGAGCCAG+TGG + chr4_1:72015202-72015221 None:intergenic 40.0%
AAAGAAGGCTATGCTTCCAT+TGG - chr4_1:72015241-72015260 Msa0569980:intron 40.0%
TCAGCACTAGAGCAATACAA+GGG + chr4_1:72015612-72015631 None:intergenic 40.0%
ATCAGCACTAGAGCAATACA+AGG + chr4_1:72015613-72015632 None:intergenic 40.0%
! TGCCAACATACACTTTTGCT+GGG + chr4_1:72015691-72015710 None:intergenic 40.0%
! ATGCCAACATACACTTTTGC+TGG + chr4_1:72015692-72015711 None:intergenic 40.0%
!! TTTTAGGAGGATGACATCTG+AGG - chr4_1:72015840-72015859 Msa0569980:five_prime_UTR 40.0%
ATATGAGTAGAGCAGAGAGA+GGG + chr4_1:72014071-72014090 None:intergenic 40.0%
AATATGAGTAGAGCAGAGAG+AGG + chr4_1:72014072-72014091 None:intergenic 40.0%
ATATGAGTAGAGCAGAGAGA+GGG + chr4_1:72014071-72014090 None:intergenic 40.0%
AATATGAGTAGAGCAGAGAG+AGG + chr4_1:72014072-72014091 None:intergenic 40.0%
AAGATGGGTCACTAAGAAGA+AGG + chr4_1:72014256-72014275 None:intergenic 40.0%
TTCCCACAAATTGGGAAGAT+GGG + chr4_1:72014271-72014290 None:intergenic 40.0%
ATTCCCACAAATTGGGAAGA+TGG + chr4_1:72014272-72014291 None:intergenic 40.0%
GTAGTTGAAGGACAAGTTAG+TGG - chr4_1:72014390-72014409 Msa0569980:intron 40.0%
TGAGCAAGAAGAAGTTGAAG+GGG + chr4_1:72014458-72014477 None:intergenic 40.0%
! AATTACGAGAAGCACAAGTG+CGG + chr4_1:72014501-72014520 None:intergenic 40.0%
TTGGCAAATTTACTCCAGGA+TGG - chr4_1:72014829-72014848 Msa0569980:CDS 40.0%
AGTGATTGCTTGGAAACCAA+GGG + chr4_1:72014867-72014886 None:intergenic 40.0%
TTTCCAAGCAATCACTCAAC+AGG - chr4_1:72014871-72014890 Msa0569980:CDS 40.0%
GTATCTGATACGCCTCTTAT+TGG - chr4_1:72014939-72014958 Msa0569980:CDS 40.0%
! GGAGTGTTATTGTTGAACCT+TGG - chr4_1:72014975-72014994 Msa0569980:CDS 40.0%
! GTGTTATTGTTGAACCTTGG+AGG - chr4_1:72014978-72014997 Msa0569980:CDS 40.0%
GTATTACTGGATCGGCAAAA+AGG + chr4_1:72015043-72015062 None:intergenic 40.0%
!! TGCTCAAGTGAGAGTATTAC+TGG + chr4_1:72015056-72015075 None:intergenic 40.0%
AGGATATCATACGATTGCCA+AGG - chr4_1:72015155-72015174 Msa0569980:intron 40.0%
ACAGATACAAATTGAGCCAG+TGG + chr4_1:72015202-72015221 None:intergenic 40.0%
AAAGAAGGCTATGCTTCCAT+TGG - chr4_1:72015241-72015260 Msa0569980:intron 40.0%
TCAGCACTAGAGCAATACAA+GGG + chr4_1:72015612-72015631 None:intergenic 40.0%
ATCAGCACTAGAGCAATACA+AGG + chr4_1:72015613-72015632 None:intergenic 40.0%
! TGCCAACATACACTTTTGCT+GGG + chr4_1:72015691-72015710 None:intergenic 40.0%
! ATGCCAACATACACTTTTGC+TGG + chr4_1:72015692-72015711 None:intergenic 40.0%
ATGGGTCACTAAGAAGAAGG+TGG + chr4_1:72014253-72014272 None:intergenic 45.0%
TGACCCATCTTCCCAATTTG+TGG - chr4_1:72014265-72014284 Msa0569980:intron 45.0%
GACCCATCTTCCCAATTTGT+GGG - chr4_1:72014266-72014285 Msa0569980:intron 45.0%
CTTCCCAATTTGTGGGAATC+AGG - chr4_1:72014273-72014292 Msa0569980:intron 45.0%
GGCAATCTGTACCACTCAAA+AGG - chr4_1:72014740-72014759 Msa0569980:intron 45.0%
!! GCATCGATACACCTTTTGAG+TGG + chr4_1:72014754-72014773 None:intergenic 45.0%
! CAAAAGGTGTATCGATGCTC+TGG - chr4_1:72014756-72014775 Msa0569980:intron 45.0%
GAGTGATTGCTTGGAAACCA+AGG + chr4_1:72014868-72014887 None:intergenic 45.0%
! AACAGGCACCTTTTACCTGT+GGG - chr4_1:72014888-72014907 Msa0569980:CDS 45.0%
CTAAAGCTCCCACAGGTAAA+AGG + chr4_1:72014899-72014918 None:intergenic 45.0%
GAAGTTACTAAAGCTCCCAC+AGG + chr4_1:72014906-72014925 None:intergenic 45.0%
! TGCACATCATCTAGAGTCTC+TGG + chr4_1:72015005-72015024 None:intergenic 45.0%
! AGAGCACCAAAGAGCAAAGA+AGG - chr4_1:72015226-72015245 Msa0569980:intron 45.0%
GCATAGCCTTCTTTGCTCTT+TGG + chr4_1:72015235-72015254 None:intergenic 45.0%
ATCAGTCATGCGTCTAAGAG+GGG + chr4_1:72015275-72015294 None:intergenic 45.0%
CATCAGTCATGCGTCTAAGA+GGG + chr4_1:72015276-72015295 None:intergenic 45.0%
AGCACTAGAGCAATACAAGG+GGG + chr4_1:72015610-72015629 None:intergenic 45.0%
CAGCACTAGAGCAATACAAG+GGG + chr4_1:72015611-72015630 None:intergenic 45.0%
! GTCCCAGCAAAAGTGTATGT+TGG - chr4_1:72015686-72015705 Msa0569980:five_prime_UTR 45.0%
TGTATGTTGGCATGCGTTAC+TGG - chr4_1:72015699-72015718 Msa0569980:five_prime_UTR 45.0%
TCAATAGCCTCTTCGGTGAA+TGG + chr4_1:72015728-72015747 None:intergenic 45.0%
TACCAGCTCAATAGCCTCTT+CGG + chr4_1:72015735-72015754 None:intergenic 45.0%
ATGGGTCACTAAGAAGAAGG+TGG + chr4_1:72014253-72014272 None:intergenic 45.0%
TGACCCATCTTCCCAATTTG+TGG - chr4_1:72014265-72014284 Msa0569980:intron 45.0%
GACCCATCTTCCCAATTTGT+GGG - chr4_1:72014266-72014285 Msa0569980:intron 45.0%
CTTCCCAATTTGTGGGAATC+AGG - chr4_1:72014273-72014292 Msa0569980:intron 45.0%
GGCAATCTGTACCACTCAAA+AGG - chr4_1:72014740-72014759 Msa0569980:intron 45.0%
!! GCATCGATACACCTTTTGAG+TGG + chr4_1:72014754-72014773 None:intergenic 45.0%
! CAAAAGGTGTATCGATGCTC+TGG - chr4_1:72014756-72014775 Msa0569980:intron 45.0%
GAGTGATTGCTTGGAAACCA+AGG + chr4_1:72014868-72014887 None:intergenic 45.0%
! AACAGGCACCTTTTACCTGT+GGG - chr4_1:72014888-72014907 Msa0569980:CDS 45.0%
CTAAAGCTCCCACAGGTAAA+AGG + chr4_1:72014899-72014918 None:intergenic 45.0%
GAAGTTACTAAAGCTCCCAC+AGG + chr4_1:72014906-72014925 None:intergenic 45.0%
! TGCACATCATCTAGAGTCTC+TGG + chr4_1:72015005-72015024 None:intergenic 45.0%
! AGAGCACCAAAGAGCAAAGA+AGG - chr4_1:72015226-72015245 Msa0569980:intron 45.0%
GCATAGCCTTCTTTGCTCTT+TGG + chr4_1:72015235-72015254 None:intergenic 45.0%
ATCAGTCATGCGTCTAAGAG+GGG + chr4_1:72015275-72015294 None:intergenic 45.0%
CATCAGTCATGCGTCTAAGA+GGG + chr4_1:72015276-72015295 None:intergenic 45.0%
AGCACTAGAGCAATACAAGG+GGG + chr4_1:72015610-72015629 None:intergenic 45.0%
CAGCACTAGAGCAATACAAG+GGG + chr4_1:72015611-72015630 None:intergenic 45.0%
! GTCCCAGCAAAAGTGTATGT+TGG - chr4_1:72015686-72015705 Msa0569980:five_prime_UTR 45.0%
TGTATGTTGGCATGCGTTAC+TGG - chr4_1:72015699-72015718 Msa0569980:five_prime_UTR 45.0%
TCAATAGCCTCTTCGGTGAA+TGG + chr4_1:72015728-72015747 None:intergenic 45.0%
TACCAGCTCAATAGCCTCTT+CGG + chr4_1:72015735-72015754 None:intergenic 45.0%
ACCAGTCACTCTCAACCTCA+AGG - chr4_1:72014043-72014062 Msa0569980:intron 50.0%
CCAGTCACTCTCAACCTCAA+GGG - chr4_1:72014044-72014063 Msa0569980:intron 50.0%
! GAAGTTGAAGGGGCACGAAT+TGG + chr4_1:72014448-72014467 None:intergenic 50.0%
TGAGTGGTACAGATTGCCTG+TGG + chr4_1:72014738-72014757 None:intergenic 50.0%
! AAGGTGTATCGATGCTCTGG+AGG - chr4_1:72014759-72014778 Msa0569980:intron 50.0%
! ATGGTCTGAAGCACAACCCT+TGG - chr4_1:72014848-72014867 Msa0569980:CDS 50.0%
GTGCCTGTTGAGTGATTGCT+TGG + chr4_1:72014877-72014896 None:intergenic 50.0%
! CAACAGGCACCTTTTACCTG+TGG - chr4_1:72014887-72014906 Msa0569980:CDS 50.0%
GAAGGCTATGCTTCCATTGG+TGG - chr4_1:72015244-72015263 Msa0569980:intron 50.0%
GCATCAGTCATGCGTCTAAG+AGG + chr4_1:72015277-72015296 None:intergenic 50.0%
TAGACGCATGACTGATGCAC+AGG - chr4_1:72015279-72015298 Msa0569980:intron 50.0%
ACCAGTCACTCTCAACCTCA+AGG - chr4_1:72014043-72014062 Msa0569980:intron 50.0%
CCAGTCACTCTCAACCTCAA+GGG - chr4_1:72014044-72014063 Msa0569980:intron 50.0%
! GAAGTTGAAGGGGCACGAAT+TGG + chr4_1:72014448-72014467 None:intergenic 50.0%
TGAGTGGTACAGATTGCCTG+TGG + chr4_1:72014738-72014757 None:intergenic 50.0%
! AAGGTGTATCGATGCTCTGG+AGG - chr4_1:72014759-72014778 Msa0569980:intron 50.0%
! ATGGTCTGAAGCACAACCCT+TGG - chr4_1:72014848-72014867 Msa0569980:CDS 50.0%
GTGCCTGTTGAGTGATTGCT+TGG + chr4_1:72014877-72014896 None:intergenic 50.0%
! CAACAGGCACCTTTTACCTG+TGG - chr4_1:72014887-72014906 Msa0569980:CDS 50.0%
GAAGGCTATGCTTCCATTGG+TGG - chr4_1:72015244-72015263 Msa0569980:intron 50.0%
GCATCAGTCATGCGTCTAAG+AGG + chr4_1:72015277-72015296 None:intergenic 50.0%
TAGACGCATGACTGATGCAC+AGG - chr4_1:72015279-72015298 Msa0569980:intron 50.0%
CCCTTGAGGTTGAGAGTGAC+TGG + chr4_1:72014047-72014066 None:intergenic 55.0%
GCACAAGTGCGGCAAGAATG+AGG + chr4_1:72014490-72014509 None:intergenic 55.0%
CGTTACTAGAAGCCTCCGTG+CGG + chr4_1:72014785-72014804 None:intergenic 55.0%
GGTTGTGCTTCAGACCATCC+TGG + chr4_1:72014846-72014865 None:intergenic 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr4_1:72014995-72015014 None:intergenic 55.0%
GGCTATGCTTCCATTGGTGG+TGG - chr4_1:72015247-72015266 Msa0569980:intron 55.0%
AAGAGGGGATCCACCACCAA+TGG + chr4_1:72015260-72015279 None:intergenic 55.0%
CTGGCATCCATTCACCGAAG+AGG - chr4_1:72015718-72015737 Msa0569980:five_prime_UTR 55.0%
CACCGAAGAGGCTATTGAGC+TGG - chr4_1:72015730-72015749 Msa0569980:five_prime_UTR 55.0%
CCCTTGAGGTTGAGAGTGAC+TGG + chr4_1:72014047-72014066 None:intergenic 55.0%
GCACAAGTGCGGCAAGAATG+AGG + chr4_1:72014490-72014509 None:intergenic 55.0%
CGTTACTAGAAGCCTCCGTG+CGG + chr4_1:72014785-72014804 None:intergenic 55.0%
GGTTGTGCTTCAGACCATCC+TGG + chr4_1:72014846-72014865 None:intergenic 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr4_1:72014995-72015014 None:intergenic 55.0%
GGCTATGCTTCCATTGGTGG+TGG - chr4_1:72015247-72015266 Msa0569980:intron 55.0%
AAGAGGGGATCCACCACCAA+TGG + chr4_1:72015260-72015279 None:intergenic 55.0%
CTGGCATCCATTCACCGAAG+AGG - chr4_1:72015718-72015737 Msa0569980:five_prime_UTR 55.0%
CACCGAAGAGGCTATTGAGC+TGG - chr4_1:72015730-72015749 Msa0569980:five_prime_UTR 55.0%
AGCAGAGAGAGGGACCCTTG+AGG + chr4_1:72014061-72014080 None:intergenic 60.0%
AGCAGAGAGAGGGACCCTTG+AGG + chr4_1:72014061-72014080 None:intergenic 60.0%
AGCAGAGAGAGGGACCCTTG+AGG + chr4_1:72014061-72014080 None:intergenic 60.0%
AGCAGAGAGAGGGACCCTTG+AGG + chr4_1:72014061-72014080 None:intergenic 60.0%
!! TCGATGCTCTGGAGGCCGCA+CGG - chr4_1:72014767-72014786 Msa0569980:intron 65.0%
!! TCGATGCTCTGGAGGCCGCA+CGG - chr4_1:72014767-72014786 Msa0569980:intron 65.0%
!! ATGCTCTGGAGGCCGCACGG+AGG - chr4_1:72014770-72014789 Msa0569980:intron 70.0%
!! ATGCTCTGGAGGCCGCACGG+AGG - chr4_1:72014770-72014789 Msa0569980:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 72013998 72015860 72013998 ID=Msa0569980;Name=Msa0569980
chr4_1 mRNA 72013998 72015860 72013998 ID=Msa0569980-mRNA-1;Parent=Msa0569980;Name=Msa0569980-mRNA-1;_AED=0.29;_eAED=0.29;_QI=342|0.8|0.83|0.83|0.8|0.66|6|0|228
chr4_1 exon 72013998 72014012 72013998 ID=Msa0569980-mRNA-1:exon:24583;Parent=Msa0569980-mRNA-1
chr4_1 exon 72014107 72014208 72014107 ID=Msa0569980-mRNA-1:exon:24582;Parent=Msa0569980-mRNA-1
chr4_1 exon 72014558 72014701 72014558 ID=Msa0569980-mRNA-1:exon:24581;Parent=Msa0569980-mRNA-1
chr4_1 exon 72014803 72015130 72014803 ID=Msa0569980-mRNA-1:exon:24580;Parent=Msa0569980-mRNA-1
chr4_1 exon 72015325 72015467 72015325 ID=Msa0569980-mRNA-1:exon:24579;Parent=Msa0569980-mRNA-1
chr4_1 exon 72015564 72015860 72015564 ID=Msa0569980-mRNA-1:exon:24578;Parent=Msa0569980-mRNA-1
chr4_1 five_prime_UTR 72015564 72015860 72015564 ID=Msa0569980-mRNA-1:five_prime_utr;Parent=Msa0569980-mRNA-1
chr4_1 five_prime_UTR 72015423 72015467 72015423 ID=Msa0569980-mRNA-1:five_prime_utr;Parent=Msa0569980-mRNA-1
chr4_1 CDS 72015325 72015422 72015325 ID=Msa0569980-mRNA-1:cds;Parent=Msa0569980-mRNA-1
chr4_1 CDS 72014803 72015130 72014803 ID=Msa0569980-mRNA-1:cds;Parent=Msa0569980-mRNA-1
chr4_1 CDS 72014558 72014701 72014558 ID=Msa0569980-mRNA-1:cds;Parent=Msa0569980-mRNA-1
chr4_1 CDS 72014107 72014208 72014107 ID=Msa0569980-mRNA-1:cds;Parent=Msa0569980-mRNA-1
chr4_1 CDS 72013998 72014012 72013998 ID=Msa0569980-mRNA-1:cds;Parent=Msa0569980-mRNA-1
Gene Sequence

>Msa0569980

ATGAATTCTCCAATTCGTGCCCCTTCAACTTCTTCTTGCTCATATATTCGTCCTCATTCTTGCCGCACTTGTGCTTCTCGTAATTTCAAGCTTCCTATGCTATTGCCACAGGCAATCTGTACCACTCAAAAGGTGTATCGATGCTCTGGAGGCCGCACGGAGGCTTCTAGTAACGCTAATCCATTGAAAACTTGCATTGTTGGCAAATTTACTCCAGGATGGTCTGAAGCACAACCCTTGGTTTCCAAGCAATCACTCAACAGGCACCTTTTACCTGTGGGAGCTTTAGTAACTTCAACAACTCAAGATGTATCTGATACGCCTCTTATTGGTGATGATAAGATCGGAGTGTTATTGTTGAACCTTGGAGGTCCAGAGACTCTAGATGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCCGATCCAGATATCATACGATTGCCAAGGTTATTTAGTTTTCTTCAAAAGCCACTGGCTCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCCATTGGTGGTGGATCCCCTCTTAGACGCATGACTGATGCACAGGCTGAAGAGTTAAGAAAATCTCTATTTGAAAAGAATGTCCCAGCAAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAGCTGGAGGATGACATCTGA

Protein sequence

>Msa0569980

MNSPIRAPSTSSCSYIRPHSCRTCASRNFKLPMLLPQAICTTQKVYRCSGGRTEASSNANPLKTCIVGKFTPGWSEAQPLVSKQSLNRHLLPVGALVTSTTQDVSDTPLIGDDKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRMTDAQAEELRKSLFEKNVPAKVYVGMRYWHPFTEEAIELEDDI*