AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244960 MtrunA17_Chr2g0298851 85.315 143 20 1 42 184 477 618 1.12e-73 233
Msa0244960 MtrunA17_Chr2g0298851 92.063 63 5 0 2 64 1 63 7.91e-37 134
Msa0244960 MtrunA17_Chr1g0152001 68.276 145 42 3 42 184 160 302 9.99e-57 181
Msa0244960 MtrunA17_Chr7g0228281 66.438 146 47 2 39 183 489 633 5.37e-54 181
Msa0244960 MtrunA17_Chr7g0228281 79.104 67 14 0 1 67 61 127 9.03e-33 123
Msa0244960 MtrunA17_Chr7g0225671 65.068 146 49 2 39 183 479 623 5.37e-53 178
Msa0244960 MtrunA17_Chr7g0225671 74.627 67 15 1 1 67 9 73 1.32e-28 111
Msa0244960 MtrunA17_Chr7g0215261 64.828 145 48 3 42 184 442 585 9.89e-51 171
Msa0244960 MtrunA17_Chr7g0215261 85.714 63 9 0 2 64 1 63 2.63e-33 124
Msa0244960 MtrunA17_Chr4g0012541 60.667 150 57 2 35 183 460 608 2.36e-50 171
Msa0244960 MtrunA17_Chr4g0012541 80.357 56 11 0 2 57 1 56 2.31e-27 107
Msa0244960 MtrunA17_Chr7g0223761 64.234 137 47 2 48 183 203 338 2.57e-50 165
Msa0244960 MtrunA17_Chr7g0223871 67.500 120 38 1 64 182 13 132 8.55e-50 157
Msa0244960 MtrunA17_Chr1g0166551 69.919 123 35 2 64 184 381 503 1.84e-49 167
Msa0244960 MtrunA17_Chr1g0166551 58.163 98 29 2 7 92 2 99 8.73e-30 114
Msa0244960 MtrunA17_Chr7g0223831 51.813 193 76 4 4 184 403 590 2.46e-49 168
Msa0244960 MtrunA17_Chr7g0223831 68.293 82 22 1 2 83 1 78 6.00e-33 123
Msa0244960 MtrunA17_Chr7g0223851 61.644 146 54 2 39 183 482 626 6.65e-49 167
Msa0244960 MtrunA17_Chr7g0223851 77.612 67 15 0 1 67 9 75 3.21e-32 121
Msa0244960 MtrunA17_Chr7g0223721 60.417 144 55 2 42 184 476 618 1.07e-48 166
Msa0244960 MtrunA17_Chr7g0223721 76.190 63 15 0 2 64 1 63 5.86e-30 115
Msa0244960 MtrunA17_Chr4g0040931 58.741 143 57 2 42 183 476 617 4.45e-44 154
Msa0244960 MtrunA17_Chr4g0040931 74.603 63 16 0 2 64 1 63 9.47e-28 108
Msa0244960 MtrunA17_Chr2g0298861 58.741 143 57 2 42 183 488 629 1.53e-43 152
Msa0244960 MtrunA17_Chr2g0298861 76.190 63 15 0 2 64 1 63 1.70e-29 114
Msa0244960 MtrunA17_Chr7g0245531 56.552 145 60 3 39 182 170 312 2.08e-42 144
Msa0244960 MtrunA17_Chr7g0217971 63.636 143 49 3 42 183 451 591 2.00e-41 146
Msa0244960 MtrunA17_Chr7g0217971 84.127 63 10 0 2 64 1 63 4.33e-33 124
Msa0244960 MtrunA17_Chr2g0293581 62.712 118 43 1 67 183 502 619 2.51e-41 146
Msa0244960 MtrunA17_Chr2g0293581 82.812 64 10 1 2 64 1 64 9.61e-31 117
Msa0244960 MtrunA17_Chr7g0233311 61.864 118 44 1 67 183 501 618 3.88e-40 143
Msa0244960 MtrunA17_Chr7g0233311 76.190 63 15 0 2 64 1 63 7.17e-29 112
Msa0244960 MtrunA17_Chr2g0287631 53.846 143 62 3 43 183 478 618 1.76e-39 141
Msa0244960 MtrunA17_Chr2g0287631 72.727 66 18 0 2 67 1 66 5.14e-28 109
Msa0244960 MtrunA17_Chr7g0221661 56.204 137 57 3 45 180 479 613 1.95e-39 141
Msa0244960 MtrunA17_Chr7g0221661 84.127 63 10 0 2 64 1 63 1.32e-32 122
Msa0244960 MtrunA17_Chr7g0223801 61.345 119 44 2 65 182 496 613 2.53e-39 141
Msa0244960 MtrunA17_Chr7g0223801 86.364 66 9 0 2 67 1 66 5.70e-35 129
Msa0244960 MtrunA17_Chr7g0245541 54.483 145 61 4 42 184 60 201 3.39e-38 130
Msa0244960 MtrunA17_Chr7g0233301 53.147 143 65 2 42 183 446 587 1.42e-37 136
Msa0244960 MtrunA17_Chr7g0233301 76.190 63 15 0 2 64 1 63 4.93e-28 109
Msa0244960 MtrunA17_Chr5g0427901 47.126 174 78 4 21 182 455 626 1.39e-36 133
Msa0244960 MtrunA17_Chr5g0427901 69.620 79 21 1 2 80 1 76 4.57e-31 118
Msa0244960 MtrunA17_Chr8g0390821 61.538 117 43 2 67 182 538 653 1.54e-36 133
Msa0244960 MtrunA17_Chr8g0390821 80.000 65 10 2 2 64 1 64 1.68e-27 108
Msa0244960 MtrunA17_Chr6g0481381 66.667 96 31 1 82 176 75 170 1.91e-35 122
Msa0244960 MtrunA17_Chr7g0223821 58.621 145 56 3 39 180 474 617 6.43e-35 129
Msa0244960 MtrunA17_Chr7g0223821 75.758 66 16 0 2 67 1 66 2.28e-30 116
Msa0244960 MtrunA17_Chr7g0223821 64.286 84 27 2 100 180 620 703 3.11e-22 93.2
Msa0244960 MtrunA17_Chr1g0188591 81.818 66 12 0 2 67 1 66 7.19e-35 118
Msa0244960 MtrunA17_Chr7g0223031 84.848 66 10 0 2 67 1 66 7.38e-35 129
Msa0244960 MtrunA17_Chr7g0223031 37.313 134 81 3 48 180 481 612 1.37e-15 73.9
Msa0244960 MtrunA17_Chr1g0188611 50.704 142 63 2 42 183 155 289 1.07e-34 123
Msa0244960 MtrunA17_Chr7g0223691 77.273 66 15 0 2 67 1 66 6.47e-34 115
Msa0244960 MtrunA17_Chr1g0151991 77.273 66 15 0 2 67 1 66 7.34e-33 119
Msa0244960 MtrunA17_Chr2g0293561 81.818 66 12 0 2 67 1 66 7.44e-33 120
Msa0244960 MtrunA17_Chr7g0223751 80.303 66 13 0 2 67 1 66 1.68e-32 122
Msa0244960 MtrunA17_Chr7g0223751 39.437 142 83 3 42 182 475 614 7.17e-18 80.5
Msa0244960 MtrunA17_Chr7g0223631 68.293 82 22 1 2 83 1 78 4.72e-32 120
Msa0244960 MtrunA17_Chr7g0223631 39.437 142 83 3 42 182 461 600 2.36e-20 87.8
Msa0244960 MtrunA17_Chr7g0223731 78.788 66 14 0 2 67 1 66 1.13e-31 120
Msa0244960 MtrunA17_Chr7g0223731 36.552 145 89 3 39 182 472 614 2.23e-18 82.0
Msa0244960 MtrunA17_Chr7g0223741 78.788 66 14 0 2 67 1 66 1.28e-31 119
Msa0244960 MtrunA17_Chr7g0223741 43.750 112 61 2 45 155 479 589 4.02e-16 75.5
Msa0244960 MtrunA17_Chr7g0223621 72.603 73 19 1 2 74 1 72 4.95e-31 118
Msa0244960 MtrunA17_Chr7g0223621 40.690 145 81 4 39 181 472 613 2.96e-18 81.6
Msa0244960 MtrunA17_Chr8g0350731 75.342 73 17 1 2 74 29 100 1.13e-30 117
Msa0244960 MtrunA17_Chr8g0350731 36.601 153 91 4 31 182 495 642 7.11e-17 77.8
Msa0244960 MtrunA17_Chr2g0296391 77.273 66 15 0 2 67 1 66 1.83e-30 116
Msa0244960 MtrunA17_Chr7g0223701 73.973 73 18 1 2 74 1 72 2.03e-30 116
Msa0244960 MtrunA17_Chr7g0223701 39.130 115 68 2 64 177 505 618 2.17e-15 73.2
Msa0244960 MtrunA17_Chr7g0245521 75.758 66 16 0 2 67 1 66 2.16e-30 112
Msa0244960 MtrunA17_Chr2g0293601 75.758 66 16 0 2 67 1 66 7.28e-30 114
Msa0244960 MtrunA17_Chr7g0223711 75.758 66 16 0 2 67 1 66 7.67e-30 114
Msa0244960 MtrunA17_Chr7g0223711 40.000 120 70 2 64 182 497 615 4.22e-16 75.5
Msa0244960 MtrunA17_Chr7g0248131 68.293 82 23 2 2 83 1 79 2.90e-29 113
Msa0244960 MtrunA17_Chr7g0248131 40.496 121 70 2 64 182 499 619 5.98e-18 80.9
Msa0244960 MtrunA17_Chr7g0223781 75.758 66 16 0 2 67 1 66 1.71e-28 110
Msa0244960 MtrunA17_Chr7g0223781 38.983 118 70 2 64 180 495 611 1.81e-14 70.5
Msa0244960 MtrunA17_Chr7g0223291 71.233 73 18 2 2 74 1 70 1.13e-27 108
Msa0244960 MtrunA17_Chr7g0223291 41.880 117 66 2 67 182 500 615 2.81e-19 84.7
Msa0244960 MtrunA17_Chr4g0031321 71.233 73 18 2 2 74 1 70 1.53e-27 108
Msa0244960 MtrunA17_Chr4g0031321 42.735 117 65 2 67 182 500 615 2.80e-20 87.4
Msa0244960 MtrunA17_Chr4g0031301 71.233 73 18 2 2 74 1 70 1.79e-27 108
Msa0244960 MtrunA17_Chr4g0031301 43.590 117 64 2 67 182 500 615 1.03e-20 88.6
Msa0244960 MtrunA17_Chr7g0223181 77.778 63 12 1 2 64 1 61 1.87e-27 108
Msa0244960 MtrunA17_Chr7g0223181 45.299 117 62 2 67 182 500 615 2.34e-22 93.6
Msa0244960 MtrunA17_Chr7g0262821 77.778 63 12 1 2 64 1 61 2.25e-27 107
Msa0244960 MtrunA17_Chr7g0262821 41.880 117 66 2 67 182 500 615 7.87e-19 83.2
Msa0244960 MtrunA17_Chr2g0331381 78.947 57 12 0 11 67 7 63 2.97e-27 106
Msa0244960 MtrunA17_Chr4g0073741 77.778 63 11 2 2 64 1 60 4.42e-26 103
Msa0244960 MtrunA17_Chr4g0073741 39.316 117 69 2 67 182 499 614 2.06e-17 79.3
Msa0244960 MtrunA17_Chr6g0462621 66.667 66 20 1 2 67 1 64 2.17e-25 93.6
Msa0244960 MtrunA17_Chr7g0223791 63.514 74 26 1 65 137 106 179 8.99e-25 95.1
Msa0244960 MtrunA17_Chr7g0248151 76.786 56 13 0 2 57 1 56 1.09e-23 97.4
Msa0244960 MtrunA17_Chr7g0248151 40.496 121 70 2 64 182 497 617 1.07e-17 80.1
Msa0244960 MtrunA17_Chr2g0299851 73.438 64 15 1 1 64 1029 1090 1.31e-23 97.1
Msa0244960 MtrunA17_Chr2g0299921 69.014 71 19 2 4 74 1023 1090 6.30e-23 95.1
Msa0244960 MtrunA17_Chr2g0299921 60.000 80 26 2 4 83 1407 1480 1.42e-20 88.6
Msa0244960 MtrunA17_Chr2g0284681 69.492 59 16 1 6 64 4 60 9.31e-23 94.7
Msa0244960 MtrunA17_Chr2g0299821 68.254 63 18 1 2 64 1 61 5.51e-22 92.0
Msa0244960 MtrunA17_Chr6g0462681 63.636 66 22 1 2 67 1 64 1.34e-21 91.3
Msa0244960 MtrunA17_Chr6g0462681 45.263 95 51 1 63 156 495 589 2.26e-16 76.3
Msa0244960 MtrunA17_Chr6g0462601 66.129 62 19 1 2 63 1 60 1.47e-20 88.2
Msa0244960 MtrunA17_Chr6g0462601 47.619 84 43 1 74 156 506 589 4.02e-15 72.4
Msa0244960 MtrunA17_Chr7g0223681 40.845 142 81 3 42 182 386 525 2.28e-20 87.8
Msa0244960 MtrunA17_Chr2g0299791 57.831 83 29 2 1 83 1033 1109 6.29e-20 86.7
Msa0244960 MtrunA17_Chr8g0388761 69.643 56 15 1 8 63 36 89 1.13e-19 85.9
Msa0244960 MtrunA17_Chr8g0388761 44.068 118 62 3 42 156 501 617 2.52e-15 73.2
Msa0244960 MtrunA17_Chr8g0388671 69.643 56 15 1 8 63 36 89 1.34e-19 85.5
Msa0244960 MtrunA17_Chr8g0388671 44.915 118 61 3 42 156 501 617 5.83e-16 75.1
Msa0244960 MtrunA17_Chr2g0299881 61.972 71 24 2 4 74 1032 1099 5.86e-19 84.0
Msa0244960 MtrunA17_Chr7g0223541 40.288 139 80 3 45 182 436 572 1.18e-18 82.8
Msa0244960 MtrunA17_Chr6g0462771 65.517 58 18 1 10 67 9 64 1.15e-16 77.0
Msa0244960 MtrunA17_Chr2g0293271 61.538 52 20 0 16 67 37 88 2.21e-16 75.9
Msa0244960 MtrunA17_Chr6g0462711 63.793 58 20 1 10 67 10 66 1.68e-15 73.6
Msa0244960 MtrunA17_Chr6g0462711 36.975 119 73 2 65 182 504 621 1.84e-13 67.8
Msa0244960 MtrunA17_Chr6g0462611 40.000 110 64 2 48 156 429 537 2.46e-15 73.2
Msa0244960 MtrunA17_Chr6g0462641 54.545 66 28 1 2 67 1 64 5.39e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244960 AT3G12580.1 71.233 73 18 2 2 74 1 70 1.96e-27 108
Msa0244960 AT3G12580.1 42.735 117 65 2 67 182 500 615 1.01e-19 86.3
Msa0244960 AT5G02490.1 77.778 63 12 1 2 64 1 61 2.34e-27 108
Msa0244960 AT5G02490.1 40.171 117 68 2 67 182 500 615 9.79e-19 83.6
Msa0244960 AT3G09440.1 77.778 63 12 1 2 64 1 61 2.59e-27 108
Msa0244960 AT3G09440.1 41.026 117 67 2 67 182 500 615 1.46e-18 82.8
Msa0244960 AT3G09440.4 77.778 63 12 1 2 64 1 61 2.59e-27 108
Msa0244960 AT3G09440.4 41.026 117 67 2 67 182 500 615 1.46e-18 82.8
Msa0244960 AT3G09440.2 77.778 63 12 1 2 64 1 61 2.59e-27 108
Msa0244960 AT3G09440.2 41.026 117 67 2 67 182 500 615 1.46e-18 82.8
Msa0244960 AT3G09440.3 77.778 63 12 1 2 64 1 61 2.59e-27 108
Msa0244960 AT3G09440.3 41.026 117 67 2 67 182 500 615 1.46e-18 82.8
Msa0244960 AT1G56410.1 77.778 63 12 1 2 64 1 61 3.35e-27 107
Msa0244960 AT1G56410.1 36.620 142 86 4 42 182 475 613 2.36e-16 76.6
Msa0244960 AT5G02500.2 76.190 63 13 1 2 64 1 61 6.30e-27 106
Msa0244960 AT5G02500.1 76.190 63 13 1 2 64 1 61 7.17e-27 106
Msa0244960 AT5G02500.1 41.026 117 67 2 67 182 500 615 2.51e-18 82.4
Msa0244960 AT1G16030.1 77.778 63 11 2 2 64 1 60 8.51e-26 103
Msa0244960 AT1G16030.1 36.752 117 72 2 67 182 499 614 1.00e-15 74.7
Msa0244960 AT1G09080.2 71.930 57 14 1 8 64 40 94 6.56e-21 89.7
Msa0244960 AT1G09080.1 71.930 57 14 1 8 64 50 104 7.05e-21 89.7
Msa0244960 AT5G28540.1 68.421 57 16 1 8 64 35 89 2.06e-19 85.5
Msa0244960 AT5G28540.1 40.141 142 80 4 42 180 500 639 6.33e-16 75.5
Msa0244960 AT5G42020.1 68.421 57 16 1 8 64 35 89 2.18e-19 85.5
Msa0244960 AT5G42020.1 40.141 142 80 4 42 180 500 639 4.70e-16 75.9
Msa0244960 AT5G42020.3 68.421 57 16 1 8 64 40 94 2.38e-19 85.1
Msa0244960 AT5G42020.3 40.141 142 80 4 42 180 505 644 5.33e-16 75.5
Msa0244960 AT5G42020.2 68.421 57 16 1 8 64 35 89 2.76e-19 85.1

Find 27 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCATGATCAAAGGTTGAT+TGG 0.377170 2_2:-23813546 Msa0244960:CDS
AAGGTGTTGTTCTGTTTCCT+TGG 0.457681 2_2:+23813583 None:intergenic
GAGCATGTTGAAGCACGTTA+TGG 0.459634 2_2:-23811159 Msa0244960:CDS
GATCTTCTCAATTTCTTGAG+AGG 0.476656 2_2:+23811274 None:intergenic
AAAATAAAACTAGCCAGTCT+TGG 0.498554 2_2:+23811136 None:intergenic
TGGTGATGCTGCTAAGAATC+AGG 0.503682 2_2:-23813526 Msa0244960:intron
TTCATGTGTTGGTGTGTGGA+TGG 0.505674 2_2:-23813640 Msa0244960:CDS
ATCCAATGCATTCATTACCT+TGG 0.506126 2_2:+23811352 None:intergenic
TCTGCTAAGGAAGTATCTAC+AGG 0.519487 2_2:-23811494 Msa0244960:intron
TTGCTTTCACTCATGATCAA+AGG 0.522460 2_2:-23813554 Msa0244960:CDS
AAAAGAAAGATTGTCAACCT+TGG 0.531815 2_2:-23811441 Msa0244960:CDS
TGAGTCTCATCTGAAGGAGA+TGG 0.534458 2_2:-23811183 Msa0244960:CDS
TGAGTGAAAGCAACAAAAGA+AGG 0.535631 2_2:+23813564 None:intergenic
ATTCTTATCAAGCAAACTTG+TGG 0.546269 2_2:+23811232 None:intergenic
AAGCACGTTATGGCCAAGAC+TGG 0.550525 2_2:-23811149 Msa0244960:CDS
GGAACAACTTATTCATGTGT+TGG 0.554622 2_2:-23813651 Msa0244960:CDS
GGCCAAGGTAATGAATGCAT+TGG 0.562571 2_2:-23811354 Msa0244960:CDS
CTTATTCATGTGTTGGTGTG+TGG 0.568029 2_2:-23813644 Msa0244960:CDS
CGTGCAGTGGGAATAGACCT+TGG 0.587820 2_2:-23813672 Msa0244960:CDS
AAACATGAAGGACGTGCAGT+GGG 0.588952 2_2:-23813684 Msa0244960:CDS
AAAACATGAAGGACGTGCAG+TGG 0.589458 2_2:-23813685 Msa0244960:CDS
CACATGAATAAGTTGTTCCA+AGG 0.591728 2_2:+23813655 None:intergenic
TGTTCTTGAGTCTCATCTGA+AGG 0.596826 2_2:-23811189 Msa0244960:CDS
GATCAACAATGCAATTACTG+TGG 0.689297 2_2:-23811255 Msa0244960:CDS
GAGATCATACACAATGACCA+AGG 0.693570 2_2:-23813600 Msa0244960:CDS
AAAATTTCTTATCTTCCACG+TGG 0.711314 2_2:+23811384 None:intergenic
AGAAGCTGAGAGATACCACG+TGG 0.758168 2_2:-23811399 Msa0244960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATGTGATTTTTTTTA+GGG + chr2_2:23811468-23811487 None:intergenic 10.0%
!!! TAAAAAATGTGATTTTTTTT+AGG + chr2_2:23811469-23811488 None:intergenic 10.0%
!!! AATATTCACAATTTTTTTAA+AGG - chr2_2:23811524-23811543 Msa0244960:intron 10.0%
!!! ATATTCACAATTTTTTTAAA+GGG - chr2_2:23811525-23811544 Msa0244960:intron 10.0%
!!! TTGTTCTTATTTTTATTATT+AGG - chr2_2:23811775-23811794 Msa0244960:intron 10.0%
!! GATTAATCCTAAAAATTATT+GGG + chr2_2:23811403-23811422 None:intergenic 15.0%
!! TGATTAATCCTAAAAATTAT+TGG + chr2_2:23811404-23811423 None:intergenic 15.0%
!!! TTATGCTTTTTTTTTTTTGT+TGG - chr2_2:23811689-23811708 Msa0244960:intron 15.0%
!! AACATAAAAAACAAAAATAC+CGG + chr2_2:23812052-23812071 None:intergenic 15.0%
!!! AATCATTTTTTTAATTTCCA+AGG + chr2_2:23813420-23813439 None:intergenic 15.0%
!! TTACTTAGTATTCAAAATTC+GGG + chr2_2:23811622-23811641 None:intergenic 20.0%
!! CTTACTTAGTATTCAAAATT+CGG + chr2_2:23811623-23811642 None:intergenic 20.0%
!!! TAAGTTTTTACTTTTTGTCT+TGG + chr2_2:23811882-23811901 None:intergenic 20.0%
!! CGCACTAATAATAATAATAA+TGG + chr2_2:23811972-23811991 None:intergenic 20.0%
!!! ATAATATCATTTTGAACAAC+AGG + chr2_2:23812120-23812139 None:intergenic 20.0%
!! TTCAAAATGATATTATGTTG+TGG - chr2_2:23812124-23812143 Msa0244960:intron 20.0%
!! TTATACTTAAGAGTAATGAT+GGG + chr2_2:23812183-23812202 None:intergenic 20.0%
!! ATCATTACTCTTAAGTATAA+GGG - chr2_2:23812183-23812202 Msa0244960:intron 20.0%
!! TGATTATTCTAATGACATTA+AGG + chr2_2:23812380-23812399 None:intergenic 20.0%
!!! AGATAAGAAATTTTTACAGA+AGG - chr2_2:23813466-23813485 Msa0244960:intron 20.0%
! ATTATGGCAAAAAAACATGA+AGG - chr2_2:23811145-23811164 Msa0244960:CDS 25.0%
! TTTCTATTCTCTCCTATTTA+GGG - chr2_2:23811373-23811392 Msa0244960:CDS 25.0%
! AATCCTAAAAATTATTGGGT+TGG + chr2_2:23811399-23811418 None:intergenic 25.0%
!!! GAGTGCAATTTGTTTTTTTA+GGG - chr2_2:23811547-23811566 Msa0244960:intron 25.0%
!! CGAATTTTGAATACTAAGTA+AGG - chr2_2:23811621-23811640 Msa0244960:intron 25.0%
!!! GCTTTTTTTTTTTTGTTGGT+CGG - chr2_2:23811693-23811712 Msa0244960:intron 25.0%
! ATATATACAGATCAACACAA+GGG + chr2_2:23811745-23811764 None:intergenic 25.0%
! AATATATACAGATCAACACA+AGG + chr2_2:23811746-23811765 None:intergenic 25.0%
! CAAGAAAAAGTTTCTACTAA+TGG - chr2_2:23811908-23811927 Msa0244960:intron 25.0%
! CATGTCATGATTATTACAAA+TGG - chr2_2:23812013-23812032 Msa0244960:intron 25.0%
!!! TTGTTTTTTCAGATGCTAAA+AGG - chr2_2:23812070-23812089 Msa0244960:intron 25.0%
! CTTATACTTAAGAGTAATGA+TGG + chr2_2:23812184-23812203 None:intergenic 25.0%
! CATCATTACTCTTAAGTATA+AGG - chr2_2:23812182-23812201 Msa0244960:intron 25.0%
! GTTTCAAAAGAAGAATAAAG+TGG - chr2_2:23812617-23812636 Msa0244960:intron 25.0%
! CATATTAATTTCCTCAAACT+TGG + chr2_2:23812787-23812806 None:intergenic 25.0%
! CAAGTTTGAGGAAATTAATA+TGG - chr2_2:23812785-23812804 Msa0244960:intron 25.0%
! AGTCTCAATTAATGTTTATG+AGG - chr2_2:23813196-23813215 Msa0244960:intron 25.0%
! GTCTCAATTAATGTTTATGA+GGG - chr2_2:23813197-23813216 Msa0244960:intron 25.0%
!!! TCTTTCTTTTTCATTGGTTA+TGG + chr2_2:23813390-23813409 None:intergenic 25.0%
!!! TGACAATCTTTCTTTTTCAT+TGG + chr2_2:23813396-23813415 None:intergenic 25.0%
GAATAGAAACATACCAAAGA+TGG + chr2_2:23811362-23811381 None:intergenic 30.0%
GTTTCTATTCTCTCCTATTT+AGG - chr2_2:23811372-23811391 Msa0244960:CDS 30.0%
!!! GGAGTGCAATTTGTTTTTTT+AGG - chr2_2:23811546-23811565 Msa0244960:intron 30.0%
!! CATGTGCATACACTTATTTT+AGG + chr2_2:23811647-23811666 None:intergenic 30.0%
TTATTAGGAGAATGCTTATG+AGG - chr2_2:23811790-23811809 Msa0244960:intron 30.0%
ATTAGTGCGACTTTAAATAG+TGG - chr2_2:23811983-23812002 Msa0244960:intron 30.0%
! AAATGGATGTACGATTTTAC+CGG - chr2_2:23812030-23812049 Msa0244960:intron 30.0%
TCAGATGCTAAAAGGTTAAT+TGG - chr2_2:23812078-23812097 Msa0244960:intron 30.0%
ATGCTAAAAGGTTAATTGGT+AGG - chr2_2:23812082-23812101 Msa0244960:intron 30.0%
ATTCCAGAAATAACCTTGAA+TGG + chr2_2:23812150-23812169 None:intergenic 30.0%
ATATTTCCTCAGCACAAAAT+TGG + chr2_2:23812218-23812237 None:intergenic 30.0%
!! AATATTTTTGTCTTCGACCT+TGG - chr2_2:23812465-23812484 Msa0244960:intron 30.0%
! AGAGGACTTTGATAACAAAA+TGG - chr2_2:23812575-23812594 Msa0244960:intron 30.0%
AATGGTGAACTACTTTGTAA+AGG - chr2_2:23812593-23812612 Msa0244960:intron 30.0%
TAAAGAATCTACCTCAACAT+TGG + chr2_2:23812727-23812746 None:intergenic 30.0%
! TGAGGTAGATTCTTTATTTC+AGG - chr2_2:23812731-23812750 Msa0244960:intron 30.0%
! GAGGTAGATTCTTTATTTCA+GGG - chr2_2:23812732-23812751 Msa0244960:intron 30.0%
!!! TCTATTGCAAGACTTTTTCA+AGG - chr2_2:23812929-23812948 Msa0244960:intron 30.0%
!!! CTATTGCAAGACTTTTTCAA+GGG - chr2_2:23812930-23812949 Msa0244960:intron 30.0%
!!! TATTGCAAGACTTTTTCAAG+GGG - chr2_2:23812931-23812950 Msa0244960:intron 30.0%
AAAAGAAAGATTGTCAACCT+TGG - chr2_2:23813400-23813419 Msa0244960:intron 30.0%
AAAATTTCTTATCTTCCACG+TGG + chr2_2:23813460-23813479 None:intergenic 30.0%
ATTCTTATCAAGCAAACTTG+TGG + chr2_2:23813612-23813631 None:intergenic 30.0%
CACATGAATAAGTTGTTCCA+AGG + chr2_2:23811189-23811208 None:intergenic 35.0%
GGAACAACTTATTCATGTGT+TGG - chr2_2:23811190-23811209 Msa0244960:CDS 35.0%
TGAGTGAAAGCAACAAAAGA+AGG + chr2_2:23811280-23811299 None:intergenic 35.0%
TTGCTTTCACTCATGATCAA+AGG - chr2_2:23811287-23811306 Msa0244960:CDS 35.0%
! ACTCATGATCAAAGGTTGAT+TGG - chr2_2:23811295-23811314 Msa0244960:CDS 35.0%
! TACCAAAGATGGTGTTTTGT+GGG + chr2_2:23811351-23811370 None:intergenic 35.0%
! ATACCAAAGATGGTGTTTTG+TGG + chr2_2:23811352-23811371 None:intergenic 35.0%
TATTATGTTGTGGCCATTCA+AGG - chr2_2:23812134-23812153 Msa0244960:intron 35.0%
! AGAAGTTGCTGAAGCATTTA+TGG - chr2_2:23812263-23812282 Msa0244960:intron 35.0%
AGTAACAACAGCATTCTTGA+CGG + chr2_2:23812295-23812314 None:intergenic 35.0%
TGTGTCTATCCTCACAATTA+AGG - chr2_2:23812503-23812522 Msa0244960:intron 35.0%
GTGTCTATCCTCACAATTAA+GGG - chr2_2:23812504-23812523 Msa0244960:intron 35.0%
AATTAAGGGTGATGTCTTTG+AGG - chr2_2:23812518-23812537 Msa0244960:intron 35.0%
AAGAATAAAGTGGACATCAG+TGG - chr2_2:23812627-23812646 Msa0244960:intron 35.0%
AGAATAAAGTGGACATCAGT+GGG - chr2_2:23812628-23812647 Msa0244960:intron 35.0%
TAATTTCCTCAAACTTGGCA+CGG + chr2_2:23812782-23812801 None:intergenic 35.0%
AGTGATTCAAAGATGCACAT+CGG - chr2_2:23812849-23812868 Msa0244960:intron 35.0%
!! TATTGATGACGTTGTTCTTG+TGG - chr2_2:23812875-23812894 Msa0244960:intron 35.0%
!! ATTGATGACGTTGTTCTTGT+GGG - chr2_2:23812876-23812895 Msa0244960:intron 35.0%
!! TTTATGCAAGAGTATCAACC+CGG - chr2_2:23812959-23812978 Msa0244960:intron 35.0%
!! AATTGTTTTGTCTTTGCCAC+AGG + chr2_2:23813149-23813168 None:intergenic 35.0%
TTCGCAATGGTTATCTATAG+CGG + chr2_2:23813177-23813196 None:intergenic 35.0%
CATTAATTGAGACTTCGCAA+TGG + chr2_2:23813190-23813209 None:intergenic 35.0%
CAAAACATACATCTAAGGGT+TGG + chr2_2:23813298-23813317 None:intergenic 35.0%
AGGGCAAAACATACATCTAA+GGG + chr2_2:23813302-23813321 None:intergenic 35.0%
! TAGGATACCATTTTCATCGA+GGG + chr2_2:23813321-23813340 None:intergenic 35.0%
! TTAGGATACCATTTTCATCG+AGG + chr2_2:23813322-23813341 None:intergenic 35.0%
!! TATCCTAACTGTTTCTGCTA+AGG - chr2_2:23813334-23813353 Msa0244960:intron 35.0%
! GAAATTTTTACAGAAGGCCA+AGG - chr2_2:23813472-23813491 Msa0244960:intron 35.0%
ATCCAATGCATTCATTACCT+TGG + chr2_2:23813492-23813511 None:intergenic 35.0%
GATCTTCTCAATTTCTTGAG+AGG + chr2_2:23813570-23813589 None:intergenic 35.0%
GATCAACAATGCAATTACTG+TGG - chr2_2:23813586-23813605 Msa0244960:CDS 35.0%
! CTTATTCATGTGTTGGTGTG+TGG - chr2_2:23811197-23811216 Msa0244960:CDS 40.0%
GAGATCATACACAATGACCA+AGG - chr2_2:23811241-23811260 Msa0244960:CDS 40.0%
!! AAGGTGTTGTTCTGTTTCCT+TGG + chr2_2:23811261-23811280 None:intergenic 40.0%
AACCCACAAAACACCATCTT+TGG - chr2_2:23811346-23811365 Msa0244960:CDS 40.0%
!! TTATTGGGTTGGCCCTAAAT+AGG + chr2_2:23811388-23811407 None:intergenic 40.0%
! GGGCCAACCCAATAATTTTT+AGG - chr2_2:23811393-23811412 Msa0244960:CDS 40.0%
TACAGATCAACACAAGGGTA+AGG + chr2_2:23811740-23811759 None:intergenic 40.0%
AGAATGCTTATGAGGACCTT+TGG - chr2_2:23811798-23811817 Msa0244960:intron 40.0%
GAATGCTTATGAGGACCTTT+GGG - chr2_2:23811799-23811818 Msa0244960:intron 40.0%
AATGCTTATGAGGACCTTTG+GGG - chr2_2:23811800-23811819 Msa0244960:intron 40.0%
TACTTTAACCAATGCCCCAA+AGG + chr2_2:23811817-23811836 None:intergenic 40.0%
! TTTTGCTAACCAGTGCTCTA+AGG + chr2_2:23811949-23811968 None:intergenic 40.0%
! TGGCCATTCAAGGTTATTTC+TGG - chr2_2:23812144-23812163 Msa0244960:intron 40.0%
CAACTTCTCGCATCTTTGTA+AGG + chr2_2:23812251-23812270 None:intergenic 40.0%
GTAACAACAGCATTCTTGAC+GGG + chr2_2:23812294-23812313 None:intergenic 40.0%
TGCGAATCATTGAAGTAAGC+TGG + chr2_2:23812321-23812340 None:intergenic 40.0%
AATGACATTAAGGCCAGCAA+TGG + chr2_2:23812370-23812389 None:intergenic 40.0%
GAAGTGATTGCGATGGTAAA+CGG - chr2_2:23812442-23812461 Msa0244960:intron 40.0%
! ATTTTTGTCTTCGACCTTGG+CGG - chr2_2:23812468-23812487 Msa0244960:intron 40.0%
AGACATCACCCTTAATTGTG+AGG + chr2_2:23812515-23812534 None:intergenic 40.0%
! TTTGAGGTAAAAGCCACTAC+TGG - chr2_2:23812534-23812553 Msa0244960:intron 40.0%
! TGCTTTTGTCACCAATGTTG+AGG - chr2_2:23812713-23812732 Msa0244960:intron 40.0%
AATTTCCTCAAACTTGGCAC+GGG + chr2_2:23812781-23812800 None:intergenic 40.0%
TGCAATAGATCCTGCACTTT+GGG + chr2_2:23812918-23812937 None:intergenic 40.0%
TTGCAATAGATCCTGCACTT+TGG + chr2_2:23812919-23812938 None:intergenic 40.0%
! CTTTAAGAATGTCCCGAACT+TGG - chr2_2:23813034-23813053 Msa0244960:intron 40.0%
!! ACAGGTATGGAAGTGTTTCT+AGG + chr2_2:23813131-23813150 None:intergenic 40.0%
TAGAAACACTTCCATACCTG+TGG - chr2_2:23813130-23813149 Msa0244960:intron 40.0%
! TTTTGTCTTTGCCACAGGTA+TGG + chr2_2:23813144-23813163 None:intergenic 40.0%
GCTACTGACAATAATCTGCT+TGG - chr2_2:23813233-23813252 Msa0244960:intron 40.0%
GAGGGCAAAACATACATCTA+AGG + chr2_2:23813303-23813322 None:intergenic 40.0%
! TGTTTTGCCCTCGATGAAAA+TGG - chr2_2:23813311-23813330 Msa0244960:intron 40.0%
CTTCCTTAGCAGAAACAGTT+AGG + chr2_2:23813340-23813359 None:intergenic 40.0%
!! TCTGCTAAGGAAGTATCTAC+AGG - chr2_2:23813347-23813366 Msa0244960:intron 40.0%
TGTTCTTGAGTCTCATCTGA+AGG - chr2_2:23813652-23813671 Msa0244960:CDS 40.0%
AAAACATGAAGGACGTGCAG+TGG - chr2_2:23811156-23811175 Msa0244960:CDS 45.0%
AAACATGAAGGACGTGCAGT+GGG - chr2_2:23811157-23811176 Msa0244960:CDS 45.0%
! TTCATGTGTTGGTGTGTGGA+TGG - chr2_2:23811201-23811220 Msa0244960:CDS 45.0%
! TGGTGATGCTGCTAAGAATC+AGG - chr2_2:23811315-23811334 Msa0244960:CDS 45.0%
!!! GATGGTGTTTTGTGGGTTAG+CGG + chr2_2:23811344-23811363 None:intergenic 45.0%
GGCTACTAAAGCCTTGCTTT+AGG + chr2_2:23811719-23811738 None:intergenic 45.0%
TAACCAATGCCTTAGAGCAC+TGG - chr2_2:23811937-23811956 Msa0244960:intron 45.0%
!! TAACCAGTGCTCTAAGGCAT+TGG + chr2_2:23811943-23811962 None:intergenic 45.0%
! AGAGAGCCAATTTTGTGCTG+AGG - chr2_2:23812209-23812228 Msa0244960:intron 45.0%
TATGCAATAGCTGCAGCAGT+AGG + chr2_2:23812408-23812427 None:intergenic 45.0%
ACTGCTGCAGCTATTGCATA+TGG - chr2_2:23812408-23812427 Msa0244960:intron 45.0%
GACAAGAGAAGTGATTGCGA+TGG - chr2_2:23812435-23812454 Msa0244960:intron 45.0%
AAGGTGAGTGTTTCCAGTAG+TGG + chr2_2:23812550-23812569 None:intergenic 45.0%
ACTACTGGAAACACTCACCT+TGG - chr2_2:23812549-23812568 Msa0244960:intron 45.0%
CTACTGGAAACACTCACCTT+GGG - chr2_2:23812550-23812569 Msa0244960:intron 45.0%
TACTGGAAACACTCACCTTG+GGG - chr2_2:23812551-23812570 Msa0244960:intron 45.0%
TCAACCTCCTTAAGGCTCTT+GGG + chr2_2:23812656-23812675 None:intergenic 45.0%
GGAAGTTCTCAACCTCCTTA+AGG + chr2_2:23812664-23812683 None:intergenic 45.0%
GTTGAGAACTTCCTGTGAGA+GGG - chr2_2:23812671-23812690 Msa0244960:intron 45.0%
! ATCTAGGATTCCCAAAGTGC+AGG - chr2_2:23812905-23812924 Msa0244960:intron 45.0%
!!! GCAAGACTTTTTCAAGGGGA+AGG - chr2_2:23812935-23812954 Msa0244960:intron 45.0%
CATAAGCAACAGCTTCATCC+GGG + chr2_2:23812980-23812999 None:intergenic 45.0%
CCATAAGCAACAGCTTCATC+CGG + chr2_2:23812981-23813000 None:intergenic 45.0%
!!! CAAGCTGCTATTTTGAGCGA+AGG - chr2_2:23813011-23813030 Msa0244960:intron 45.0%
ACATCTCGCAACACCAAGTT+CGG + chr2_2:23813050-23813069 None:intergenic 45.0%
TTCAGCCTTTCTTGTGTTCC+AGG - chr2_2:23813260-23813279 Msa0244960:intron 45.0%
GGCCAAGGTAATGAATGCAT+TGG - chr2_2:23813487-23813506 Msa0244960:intron 45.0%
TGAGTCTCATCTGAAGGAGA+TGG - chr2_2:23813658-23813677 Msa0244960:CDS 45.0%
GAGCATGTTGAAGCACGTTA+TGG - chr2_2:23813682-23813701 Msa0244960:CDS 45.0%
TTGTTGGTCGGCCTAAAGCA+AGG - chr2_2:23811705-23811724 Msa0244960:intron 50.0%
!! TATGAGGACCTTTGGGGCAT+TGG - chr2_2:23811806-23811825 Msa0244960:intron 50.0%
CGAAAAGCCACCATAGATGC+TGG - chr2_2:23812342-23812361 Msa0244960:intron 50.0%
AATGGCACCAGCATCTATGG+TGG + chr2_2:23812352-23812371 None:intergenic 50.0%
AGCAATGGCACCAGCATCTA+TGG + chr2_2:23812355-23812374 None:intergenic 50.0%
!! ATAGATGCTGGTGCCATTGC+TGG - chr2_2:23812354-23812373 Msa0244960:intron 50.0%
!! CATCAAAAGTACCACCGCCA+AGG + chr2_2:23812485-23812504 None:intergenic 50.0%
ACTGGAAACACTCACCTTGG+GGG - chr2_2:23812552-23812571 Msa0244960:intron 50.0%
TATCAAAGTCCTCTCCCCCA+AGG + chr2_2:23812569-23812588 None:intergenic 50.0%
CTCAACCTCCTTAAGGCTCT+TGG + chr2_2:23812657-23812676 None:intergenic 50.0%
GGTTGAGAACTTCCTGTGAG+AGG - chr2_2:23812670-23812689 Msa0244960:intron 50.0%
AATCACCCGTGCCAAGTTTG+AGG - chr2_2:23812773-23812792 Msa0244960:intron 50.0%
GATGACGTTGTTCTTGTGGG+TGG - chr2_2:23812879-23812898 Msa0244960:intron 50.0%
TTCTTGTGGGTGGCTCATCT+AGG - chr2_2:23812889-23812908 Msa0244960:intron 50.0%
! CCGGATGAAGCTGTTGCTTA+TGG - chr2_2:23812978-23812997 Msa0244960:intron 50.0%
CATCTCGCAACACCAAGTTC+GGG + chr2_2:23813049-23813068 None:intergenic 50.0%
ACTGCGATTCCAAGCGACAA+CGG + chr2_2:23813077-23813096 None:intergenic 50.0%
! TTGTCGCTTGGAATCGCAGT+CGG - chr2_2:23813077-23813096 Msa0244960:intron 50.0%
GAGCACCTGGAACACAAGAA+AGG + chr2_2:23813268-23813287 None:intergenic 50.0%
AGAAGCTGAGAGATACCACG+TGG - chr2_2:23813442-23813461 Msa0244960:intron 50.0%
AAGCACGTTATGGCCAAGAC+TGG - chr2_2:23813692-23813711 Msa0244960:CDS 50.0%
CGTGCAGTGGGAATAGACCT+TGG - chr2_2:23811169-23811188 Msa0244960:CDS 55.0%
TTTGTCTTCGACCTTGGCGG+TGG - chr2_2:23812471-23812490 Msa0244960:intron 55.0%
AAACACTCACCTTGGGGGAG+AGG - chr2_2:23812557-23812576 Msa0244960:intron 55.0%
GTGGGAACCCAAGAGCCTTA+AGG - chr2_2:23812646-23812665 Msa0244960:intron 55.0%
GGAACCCAAGAGCCTTAAGG+AGG - chr2_2:23812649-23812668 Msa0244960:intron 55.0%
CTTCCTGTGAGAGGGCAAAG+AGG - chr2_2:23812679-23812698 Msa0244960:intron 55.0%
TGTCCTCTTTGCCCTCTCAC+AGG + chr2_2:23812685-23812704 None:intergenic 55.0%
GATGTTACCCCGTTGTCGCT+TGG - chr2_2:23813065-23813084 Msa0244960:intron 55.0%
TGCGATTCCAAGCGACAACG+GGG + chr2_2:23813075-23813094 None:intergenic 55.0%
CTGCGATTCCAAGCGACAAC+GGG + chr2_2:23813076-23813095 None:intergenic 55.0%
CTTGTGTTCCAGGTGCTCCT+CGG - chr2_2:23813270-23813289 Msa0244960:intron 55.0%
TTGTGTTCCAGGTGCTCCTC+GGG - chr2_2:23813271-23813290 Msa0244960:intron 55.0%
TGTGTTCCAGGTGCTCCTCG+GGG - chr2_2:23813272-23813291 Msa0244960:intron 60.0%
!! ACATCTAAGGGTTGGCCCCG+AGG + chr2_2:23813290-23813309 None:intergenic 60.0%
!! GGTTGGCCCCGAGGAGCACC+TGG + chr2_2:23813281-23813300 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23811145 23813718 23811145 ID=Msa0244960;Name=Msa0244960
chr2_2 mRNA 23811145 23813718 23811145 ID=Msa0244960-mRNA-1;Parent=Msa0244960;Name=Msa0244960-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|184
chr2_2 exon 23813527 23813718 23813527 ID=Msa0244960-mRNA-1:exon:9213;Parent=Msa0244960-mRNA-1
chr2_2 exon 23811145 23811507 23811145 ID=Msa0244960-mRNA-1:exon:9212;Parent=Msa0244960-mRNA-1
chr2_2 CDS 23813527 23813718 23813527 ID=Msa0244960-mRNA-1:cds;Parent=Msa0244960-mRNA-1
chr2_2 CDS 23811145 23811507 23811145 ID=Msa0244960-mRNA-1:cds;Parent=Msa0244960-mRNA-1
Gene Sequence

>Msa0244960

ATTATGGCAAAAAAACATGAAGGACGTGCAGTGGGAATAGACCTTGGAACAACTTATTCATGTGTTGGTGTGTGGATGGAACATCAGAACAGAGTAGAGATCATACACAATGACCAAGGAAACAGAACAACACCTTCTTTTGTTGCTTTCACTCATGATCAAAGGTTGATTGGTGATGCTGCTAAGAATCAGGAAGTATCTACAGGAAATACAAACAAGATCACCATAACCAATGAAAAAGAAAGATTGTCAACCTTGGAAATTAAAAAAATGATTGAAGAAGCTGAGAGATACCACGTGGAAGATAAGAAATTTTTACAGAAGGCCAAGGTAATGAATGCATTGGATTATTGTGTTTACAATATGAAGAATGCTTTAAAGAAAGATGTGAATTTAAAGCTCTCCTCTCAAGAAATTGAGAAGATCAACAATGCAATTACTGTGGCCACAAGTTTGCTTGATAAGAATAACAAACAAAATGAAATAGATGTTCTTGAGTCTCATCTGAAGGAGATGGAGAGCATGTTGAAGCACGTTATGGCCAAGACTGGCTAG

Protein sequence

>Msa0244960

IMAKKHEGRAVGIDLGTTYSCVGVWMEHQNRVEIIHNDQGNRTTPSFVAFTHDQRLIGDAAKNQEVSTGNTNKITITNEKERLSTLEIKKMIEEAERYHVEDKKFLQKAKVMNALDYCVYNMKNALKKDVNLKLSSQEIEKINNAITVATSLLDKNNKQNEIDVLESHLKEMESMLKHVMAKTG*