AlfalfaGEDB | Msa0922410

M. sativa cultivar zhongmu-4 / Msa0922410

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922410	XP_039682782.1	98.089	471	9	0	1	471	1	471	0.0	967

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922410	sp\|Q9C9X7\|IDD14_ARATH	49.123	456	133	13	22	457	34	410	2.42e-127	379

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0922410	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0922410	-0.838296	3.128341e-57	-8.615850e-47
Msa0001780	Msa0922410	0.815342	9.710147e-52	-8.615850e-47
Msa0002230	Msa0922410	0.801273	9.731264e-49	-8.615850e-47
Msa0003700	Msa0922410	0.803023	4.248683e-49	-8.615850e-47
Msa0003890	Msa0922410	0.804966	1.675887e-49	-8.615850e-47
Msa0004880	Msa0922410	0.805128	1.549948e-49	-8.615850e-47
Msa0006110	Msa0922410	0.823939	1.057237e-53	-8.615850e-47
Msa0008670	Msa0922410	0.806904	6.557354e-50	-8.615850e-47
Msa0011170	Msa0922410	0.818771	1.647064e-52	-8.615850e-47
Msa0012060	Msa0922410	0.832098	1.147688e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922410	MtrunA17_Chr6g0479921	98.089	471	9	0	1	471	1	471	0.0	967
Msa0922410	MtrunA17_Chr8g0375521	57.816	467	138	12	1	457	1	418	3.54e-172	490
Msa0922410	MtrunA17_Chr7g0263941	58.730	189	70	3	1	184	3	188	5.52e-75	241
Msa0922410	MtrunA17_Chr8g0373541	63.855	166	59	1	29	194	33	197	1.63e-74	243
Msa0922410	MtrunA17_Chr8g0342421	65.385	156	53	1	29	184	62	216	1.78e-74	243
Msa0922410	MtrunA17_Chr1g0181381	64.375	160	55	2	26	184	35	193	3.84e-74	241
Msa0922410	MtrunA17_Chr1g0151351	61.404	171	59	3	21	185	28	197	6.36e-73	237
Msa0922410	MtrunA17_Chr2g0330171	63.462	156	56	1	29	184	46	200	1.27e-72	236
Msa0922410	MtrunA17_Chr1g0191991	56.757	185	69	2	29	203	63	246	5.40e-72	237
Msa0922410	MtrunA17_Chr4g0040571	64.103	156	55	1	29	184	39	193	7.49e-72	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0922410	AT1G68130.1	49.123	456	133	13	22	457	34	410	2.46e-128	379
Msa0922410	AT2G01940.1	81.643	207	29	4	21	218	32	238	1.12e-122	365
Msa0922410	AT2G01940.3	79.904	209	30	6	21	218	32	239	2.41e-117	352
Msa0922410	AT1G25250.3	81.026	195	32	2	22	211	26	220	1.05e-113	340
Msa0922410	AT1G25250.3	54.167	96	37	2	368	457	288	382	6.38e-22	97.8
Msa0922410	AT1G25250.1	81.461	178	28	2	39	211	20	197	9.86e-103	311
Msa0922410	AT1G25250.1	54.167	96	37	2	368	457	265	359	5.98e-22	97.4
Msa0922410	AT1G68130.2	43.672	403	128	13	75	457	1	324	8.94e-89	275
Msa0922410	AT2G01940.2	80.000	150	25	3	75	219	1	150	1.98e-83	261
Msa0922410	AT1G25250.2	77.465	142	27	2	75	211	1	142	7.83e-74	235

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Find 99 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAAGAAGACCGGC+CGG	0.608705	6_2:+60901749	Msa0922410:CDS
AAACAACATGGCTTTGTTGA+GGG	0.481856	6_2:+60904345	Msa0922410:CDS
AAAGCTCATCTCAAAACTTG+TGG	0.590538	6_2:+60902461	Msa0922410:CDS
AAAGCTGAGAGGATACCGAA+AGG	0.672530	6_2:+60901452	Msa0922410:five_prime_UTR
AACAAGCAAAGGAACAATTA+AGG	0.285904	6_2:+60904374	Msa0922410:CDS
AACATAGTAATCATAAACAA+TGG	0.531879	6_2:+60902393	Msa0922410:CDS
AAGATGCTTGCAACATGGGA+AGG	0.571020	6_2:+60903837	Msa0922410:CDS
AAGCTTATGCTGAAGAAGCA+AGG	0.595645	6_2:+60904413	Msa0922410:CDS
AATAGATCCAGATGCAGAAG+TGG	0.615906	6_2:+60902121	Msa0922410:intron
ACAAGCAAAGGAACAATTAA+GGG	0.459888	6_2:+60904375	Msa0922410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCTTTCTATGTTCCTTT+CGG	-	chr6_2:60901470-60901489	None:intergenic	30.0%
AGATAAGCTATTAGCTAACA+TGG	-	chr6_2:60901666-60901685	None:intergenic	30.0%
GTACTTCTTCCACTAATAAA+AGG	+	chr6_2:60901732-60901751	Msa0922410:CDS	30.0%
ATTTACAGATGCATAGAAGA+AGG	+	chr6_2:60902225-60902244	Msa0922410:CDS	30.0%
GTTTGTGAAAGATGTTCTAA+AGG	+	chr6_2:60902416-60902435	Msa0922410:CDS	30.0%
TGGAAGGGAATATAAAAGTA+AGG	+	chr6_2:60902869-60902888	Msa0922410:intron	30.0%
AAAAGTAAGGAAAATGGGAA+TGG	+	chr6_2:60902882-60902901	Msa0922410:intron	30.0%
AATGGGAATGGAAAAACAAA+AGG	+	chr6_2:60902894-60902913	Msa0922410:intron	30.0%
AAGAGAGACAAATGAAAAAG+TGG	-	chr6_2:60903382-60903401	None:intergenic	30.0%
CAAATTTCAATACATGTCCA+TGG	+	chr6_2:60903945-60903964	Msa0922410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	60901276	60904966	60901276	ID=Msa0922410;Name=Msa0922410
chr6_2	mRNA	60901276	60904966	60901276	ID=Msa0922410-mRNA-1;Parent=Msa0922410;Name=Msa0922410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=389\|1\|1\|1\|1\|1\|3\|252\|471
chr6_2	exon	60901276	60901779	60901276	ID=Msa0922410-mRNA-1:exon:9357;Parent=Msa0922410-mRNA-1
chr6_2	exon	60902126	60902525	60902126	ID=Msa0922410-mRNA-1:exon:9358;Parent=Msa0922410-mRNA-1
chr6_2	exon	60903814	60904966	60903814	ID=Msa0922410-mRNA-1:exon:9359;Parent=Msa0922410-mRNA-1
chr6_2	five_prime_UTR	60901276	60901664	60901276	ID=Msa0922410-mRNA-1:five_prime_utr;Parent=Msa0922410-mRNA-1
chr6_2	CDS	60901665	60901779	60901665	ID=Msa0922410-mRNA-1:cds;Parent=Msa0922410-mRNA-1
chr6_2	CDS	60902126	60902525	60902126	ID=Msa0922410-mRNA-1:cds;Parent=Msa0922410-mRNA-1
chr6_2	CDS	60903814	60904714	60903814	ID=Msa0922410-mRNA-1:cds;Parent=Msa0922410-mRNA-1
chr6_2	three_prime_UTR	60904715	60904966	60904715	ID=Msa0922410-mRNA-1:three_prime_utr;Parent=Msa0922410-mRNA-1

Gene Sequence

>Msa0922410

ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGTACTTCTTCCACTAATAAAAGGAAAAGAAGACCGGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTGTTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGAAGAAGGCATAAGGTACCATGGAAGCTATTGAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCATGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGAAGGATCCATAATTCAGAATCTCAACCACTTCAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCAATACATGTCCATGGCAAACAAGGCTTCAAGCAATGCCAAAAACAACAAAAGAATCAACAATTTTCATGAACCCTATTACTCCTATTACTACTATTACACCTTCTTCTCAAACTTTCTCCAAGAACAATAAACTTCTACTCCATCCAAACTTGGAACTTCAACTCTCCACCACAAACAATACCAACACGTCTTTGACAACAGACGCACCTTCGATCAGAAGTGTCGGTACTGTAGAGGCTATTCAGAAGGTTAACCGGTCAACTCAGTTACATCTCTCAATAGGGTCTTCAGAAATGAGTCATGAGAAAAATGAATCAAACAATATTAGAAACTCAAACTCATCACCAAAAGAGAGTAGCAATAGCAATGAGAAAGTTCAATCAACAACAACAAACAACATGGCTTTGTTGAGGGTTCAAGAACAAGCAAAGGAACAATTAAGGGTAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAACAAACTGAAATGGCTGAACAAGAGTTCAACAATGCAAAGAGAATTAGACAACAAGCACAAAGTGAACTTGATAAAGCTTATGGATTGAAACAACATGCAATAAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGTGTTGAGCTATGTTTCTTCTGCCATAACTACTGAAGGTGGTGAAGTAGAAAATGTTGATGGAAAAGGCAAAACAACTAATTAG

Protein sequence

>Msa0922410

MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPLQTPTACLSRTASSPSPSSETNFNTCPWQTRLQAMPKTTKESTIFMNPITPITTITPSSQTFSKNNKLLLHPNLELQLSTTNNTNTSLTTDAPSIRSVGTVEAIQKVNRSTQLHLSIGSSEMSHEKNESNNIRNSNSSPKESSNSNEKVQSTTTNNMALLRVQEQAKEQLRVAMAEKAYAEEARKQAKKQTEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIKQINSTMLQITCQACKQQFQHEDNSLVLSYVSSAITTEGGEVENVDGKGKTTN*