AlfalfaGEDB | Msa0999920

M. sativa cultivar zhongmu-4 / Msa0999920

KEGG: K00863
GO: -
PFAM: PF02733.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999920	XP_013452756.1	95.447	593	26	1	1	592	1	593	0.0	1088

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999920	sp\|O04059\|DHBK_SOLLC	71.477	589	165	3	4	590	5	592	0.0	789

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999920	A0A072UAH3	95.447	593	26	1	1	592	1	593	0.0	1088

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0999920	0.806419	8.302274e-50	-8.615850e-47
Msa0010490	Msa0999920	0.813939	1.985742e-51	-8.615850e-47
Msa0010500	Msa0999920	0.800107	1.682689e-48	-8.615850e-47
Msa0020390	Msa0999920	0.812529	4.048809e-51	-8.615850e-47
Msa0090570	Msa0999920	0.803084	4.126981e-49	-8.615850e-47
Msa0118540	Msa0999920	0.825517	4.488968e-54	-8.615850e-47
Msa0162130	Msa0999920	0.803930	2.755658e-49	-8.615850e-47
Msa0183850	Msa0999920	0.817301	3.540912e-52	-8.615850e-47
Msa0197530	Msa0999920	0.815504	8.938621e-52	-8.615850e-47
Msa0239060	Msa0999920	0.820174	7.882621e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999920	MtrunA17_Chr6g0479891	95.447	593	26	1	1	592	1	593	0.0	1088

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0999920	AT3G17770.1	70.628	589	170	3	4	590	5	592	785
Msa0999920	AT1G48430.1	70.775	568	164	2	4	570	5	571	767
Msa0999920	AT1G48430.2	70.450	555	162	2	4	557	5	558	745

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Find 176 sgRNAs with CRISPR-Local

Find 634 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGTTCCTCAATTGA+TGG	0.523846	6_4:+82472807	Msa0999920:CDS
AAACTATCTTCCAATATCTC+GGG	0.440854	6_4:+82471034	Msa0999920:CDS
AAACTCATCAACGATCCTAA+CGG	0.624179	6_4:+82464969	Msa0999920:CDS
AAAGCTCCTTATTGGCCTGT+TGG	0.505154	6_4:+82473045	Msa0999920:CDS
AAATCAATGGGAGGAACAAG+TGG	0.591320	6_4:+82474758	Msa0999920:CDS
AAATTGGTGGTAGGAGGGAA+AGG	0.552928	6_4:-82473996	None:intergenic
AACCAAGAAAATGCGAGCTA+AGG	0.537629	6_4:+82475321	Msa0999920:CDS
AACTATCTTCCAATATCTCG+GGG	0.600501	6_4:+82471035	Msa0999920:CDS
AAGCTTGCACACTCCCTGGT+AGG	0.543099	6_4:+82469260	Msa0999920:CDS
AAGGTACATAAATTGGTGGT+AGG	0.585100	6_4:-82474005	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAGAAAGATTGAAGTT+TGG	+	chr6_4:82464486-82464505	Msa0999920:five_prime_UTR	30.0%
GATGTATGTGGTTCATATTA+TGG	-	chr6_4:82464623-82464642	None:intergenic	30.0%
TTGTGTTGAAGTTGAAATGA+CGG	+	chr6_4:82465192-82465211	Msa0999920:intron	30.0%
CTCAATTGAAACTTCTGTTA+CGG	+	chr6_4:82465589-82465608	Msa0999920:intron	30.0%
AGTTATTTGACGGTTATTGT+TGG	+	chr6_4:82466009-82466028	Msa0999920:intron	30.0%
AATGCAGTTTACCTTTAATC+TGG	+	chr6_4:82466408-82466427	Msa0999920:intron	30.0%
TCAACTTGAAACTTCTTTGA+CGG	+	chr6_4:82466600-82466619	Msa0999920:intron	30.0%
CACGATTAAACGAAATATGA+AGG	-	chr6_4:82466749-82466768	None:intergenic	30.0%
GACAAATGCTAAAACAATTC+AGG	-	chr6_4:82467014-82467033	None:intergenic	30.0%
GATGCAATTTCATGTAATCT+CGG	+	chr6_4:82467070-82467089	Msa0999920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	82464481	82476206	82464481	ID=Msa0999920;Name=Msa0999920
chr6_4	mRNA	82464481	82476206	82464481	ID=Msa0999920-mRNA-1;Parent=Msa0999920;Name=Msa0999920-mRNA-1;_AED=0.19;_eAED=0.19;_QI=295\|0.90\|0.95\|0.95\|0.90\|0.86\|22\|298\|592
chr6_4	exon	82464481	82464561	82464481	ID=Msa0999920-mRNA-1:exon:15826;Parent=Msa0999920-mRNA-1
chr6_4	exon	82464709	82464849	82464709	ID=Msa0999920-mRNA-1:exon:15827;Parent=Msa0999920-mRNA-1
chr6_4	exon	82464881	82464990	82464881	ID=Msa0999920-mRNA-1:exon:15828;Parent=Msa0999920-mRNA-1
chr6_4	exon	82467538	82467611	82467538	ID=Msa0999920-mRNA-1:exon:15829;Parent=Msa0999920-mRNA-1
chr6_4	exon	82467703	82467769	82467703	ID=Msa0999920-mRNA-1:exon:15830;Parent=Msa0999920-mRNA-1
chr6_4	exon	82467980	82468092	82467980	ID=Msa0999920-mRNA-1:exon:15831;Parent=Msa0999920-mRNA-1
chr6_4	exon	82468210	82468257	82468210	ID=Msa0999920-mRNA-1:exon:15832;Parent=Msa0999920-mRNA-1
chr6_4	exon	82468734	82468805	82468734	ID=Msa0999920-mRNA-1:exon:15833;Parent=Msa0999920-mRNA-1
chr6_4	exon	82468887	82468976	82468887	ID=Msa0999920-mRNA-1:exon:15834;Parent=Msa0999920-mRNA-1
chr6_4	exon	82469160	82469333	82469160	ID=Msa0999920-mRNA-1:exon:15835;Parent=Msa0999920-mRNA-1
chr6_4	exon	82470137	82470220	82470137	ID=Msa0999920-mRNA-1:exon:15836;Parent=Msa0999920-mRNA-1
chr6_4	exon	82471029	82471084	82471029	ID=Msa0999920-mRNA-1:exon:15837;Parent=Msa0999920-mRNA-1
chr6_4	exon	82472765	82472895	82472765	ID=Msa0999920-mRNA-1:exon:15838;Parent=Msa0999920-mRNA-1
chr6_4	exon	82472983	82473075	82472983	ID=Msa0999920-mRNA-1:exon:15839;Parent=Msa0999920-mRNA-1
chr6_4	exon	82473974	82474035	82473974	ID=Msa0999920-mRNA-1:exon:15840;Parent=Msa0999920-mRNA-1
chr6_4	exon	82474147	82474290	82474147	ID=Msa0999920-mRNA-1:exon:15841;Parent=Msa0999920-mRNA-1
chr6_4	exon	82474385	82474425	82474385	ID=Msa0999920-mRNA-1:exon:15842;Parent=Msa0999920-mRNA-1
chr6_4	exon	82474703	82474786	82474703	ID=Msa0999920-mRNA-1:exon:15843;Parent=Msa0999920-mRNA-1
chr6_4	exon	82474871	82474944	82474871	ID=Msa0999920-mRNA-1:exon:15844;Parent=Msa0999920-mRNA-1
chr6_4	exon	82475060	82475172	82475060	ID=Msa0999920-mRNA-1:exon:15845;Parent=Msa0999920-mRNA-1
chr6_4	exon	82475247	82475342	82475247	ID=Msa0999920-mRNA-1:exon:15846;Parent=Msa0999920-mRNA-1
chr6_4	exon	82475783	82476206	82475783	ID=Msa0999920-mRNA-1:exon:15847;Parent=Msa0999920-mRNA-1
chr6_4	five_prime_UTR	82464481	82464561	82464481	ID=Msa0999920-mRNA-1:five_prime_utr;Parent=Msa0999920-mRNA-1
chr6_4	five_prime_UTR	82464709	82464849	82464709	ID=Msa0999920-mRNA-1:five_prime_utr;Parent=Msa0999920-mRNA-1
chr6_4	five_prime_UTR	82464881	82464953	82464881	ID=Msa0999920-mRNA-1:five_prime_utr;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82464954	82464990	82464954	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82467538	82467611	82467538	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82467703	82467769	82467703	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82467980	82468092	82467980	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82468210	82468257	82468210	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82468734	82468805	82468734	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82468887	82468976	82468887	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82469160	82469333	82469160	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82470137	82470220	82470137	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82471029	82471084	82471029	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82472765	82472895	82472765	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82472983	82473075	82472983	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82473974	82474035	82473974	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82474147	82474290	82474147	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82474385	82474425	82474385	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82474703	82474786	82474703	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82474871	82474944	82474871	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82475060	82475172	82475060	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82475247	82475342	82475247	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	CDS	82475783	82475908	82475783	ID=Msa0999920-mRNA-1:cds;Parent=Msa0999920-mRNA-1
chr6_4	three_prime_UTR	82475909	82476206	82475909	ID=Msa0999920-mRNA-1:three_prime_utr;Parent=Msa0999920-mRNA-1

Gene Sequence

>Msa0999920

ATGGCATTGGCGAAGAAACTCATCAACGATCCTAACGATGTCGAGACTGAATTCATTGACGGTCTTATGGAGACATATCCTTCACTGCAGTATTTAGATGGCTATCCTAATGTGAAGGTTGTGTTTCGTAAAGATGTTTATCCTGGTCCACCATATGATAAAGTTGCAATCATATCAGGGGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTGGGAGAAGGAATGCTGACGGCAGCCATATGCGGCGATGTCTTTGCTAGTCCAACTGTTGAGGCTATTCTTGCTGGGATACGAGCGGTAACTGGTCCAATGGGATGTCTTCTTATTGTAAAGAACTATACTGGTGATCGTTTGAACTTTGGATGGGCTGCTGAGCAAGCAAAATCTGAAGGTTATAAAGTAGAGAGTGTGATTGTTGCGGATGATTGTGCTATACCTCCACCTCTAGAGATGGTTGGAAGAAGAGGACTGGCAGGGACTATTCTGGTTCATAAGGTTGCAGGAGCTGCTGCAGCTGCTGGTCTTTCTCTTGCTGATGTTGCTGCGGAAGCAAGATATGCATCTGAAAATGTAGGAACTATGGGCGTTGCTTTAAAAGCTTGCACACTCCCTGGTAGGGTTTTAACAGATCGTTTGGGGGCATCAAAAATGGAACTTGGTCTTGGAATTCATGGGGAACCTGGTGGACTTGTGACTGATATACAGCCTTTAGAGACGGTGGTTTCTCATCTTCTGAATCAAATACTGTCCAAGGAAACAAACTATCTTCCAATATCTCGGGGTGAAAGAGTGGTCCTCATGGTCAATGGGTTAGGTGGTACTCCCTTGATGGAACTAATGATTGCAGCAGGAAAAGCAGTTCCTCAATTGATGGTGGATTATGGTCTGGCTGTTGATAGAGTATACACAGGGTCATTTATGACTTCTCTTGATATGGAAGGTTTATCAATTTCTATCATGAAGGCTGATCCGTCTATTCTTCAACGATTGGATGCTGAAACTAAAGCTCCTTATTGGCCTGTTGGAGTTAGTGTTCAACTTCAACAATTTAAAGTCCTTTCCCTCCTACCACCAATTTATGTACCTTGCGTGATGGCACAGAGTCAGCCTCTAGAATTAACTGAGCAAGGACAACTTCTTGAGCTAGCCATTGTAGCTGCTGCTAATGCACTTATAAATCTCAAGGACACACTAAATGAATGGGACAGTGAAGTTGGTGATGGTGACTGTGGTTCAACTATGCATAAAGGTGCAACGGCAGTTCTTGAAGACATGAAAAATTACCCTCTGAATGATGCTGCAGAAACTGTCGGTGAAATTGGATCAACAATTGGAAAATCAATGGGAGGAACAAGTGGGATCATATATTCAATTTTATGCAAGGCAGCATGTACACAGCTGAAAACAAGCTCCCATTCTGCTATCACATCAAAACAATGGGCTGAAGCACTTGCGGCGGGCATTGCTGCTGTTAGTAAATATGGGGGAGCCAGGGCTGGTTACAGAACATTGCTAGATGCCCTCATCCCAGCATTGTCATCACTTGAAGAGAGACTAAAACTTGGTGATGATCCTGCCACTGCTTTTCTTACCTCATCTGGAGCTGCATTAGATGGAGCTGAGTCAACCAAGAAAATGCGAGCTAAGGCTGGGCGTACCCTTTACGTGTCTCAAGATACTCAGTTATCAATTCCTGATCCGGGTGCTTATGCCACAGCTTCATGGTACAGAGCTGCAGCCCTAGCCATCAATAACAAATACAAGAATAAATAG

Protein sequence

>Msa0999920

MALAKKLINDPNDVETEFIDGLMETYPSLQYLDGYPNVKVVFRKDVYPGPPYDKVAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPTVEAILAGIRAVTGPMGCLLIVKNYTGDRLNFGWAAEQAKSEGYKVESVIVADDCAIPPPLEMVGRRGLAGTILVHKVAGAAAAAGLSLADVAAEARYASENVGTMGVALKACTLPGRVLTDRLGASKMELGLGIHGEPGGLVTDIQPLETVVSHLLNQILSKETNYLPISRGERVVLMVNGLGGTPLMELMIAAGKAVPQLMVDYGLAVDRVYTGSFMTSLDMEGLSISIMKADPSILQRLDAETKAPYWPVGVSVQLQQFKVLSLLPPIYVPCVMAQSQPLELTEQGQLLELAIVAAANALINLKDTLNEWDSEVGDGDCGSTMHKGATAVLEDMKNYPLNDAAETVGEIGSTIGKSMGGTSGIIYSILCKAACTQLKTSSHSAITSKQWAEALAAGIAAVSKYGGARAGYRTLLDALIPALSSLEERLKLGDDPATAFLTSSGAALDGAESTKKMRAKAGRTLYVSQDTQLSIPDPGAYATASWYRAAALAINNKYKNK*