Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004890 | XP_013447819.1 | 96.089 | 179 | 7 | 0 | 1 | 179 | 1 | 179 | 1.88e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004890 | A0A072TXB6 | 96.089 | 179 | 7 | 0 | 1 | 179 | 1 | 179 | 8.97e-118 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa1004890 | 0.806536 | 7.842203e-50 | -8.615850e-47 |
| Msa0010770 | Msa1004890 | 0.811100 | 8.287338e-51 | -8.615850e-47 |
| Msa0043500 | Msa1004890 | 0.804416 | 2.182659e-49 | -8.615850e-47 |
| Msa0043650 | Msa1004890 | 0.805678 | 1.188528e-49 | -8.615850e-47 |
| Msa0079230 | Msa1004890 | 0.804547 | 2.049637e-49 | -8.615850e-47 |
| Msa0105520 | Msa1004890 | 0.800337 | 1.510907e-48 | -8.615850e-47 |
| Msa0610250 | Msa1004890 | 0.804483 | 2.113837e-49 | -8.615850e-47 |
| Msa0658680 | Msa1004890 | 0.800758 | 1.240217e-48 | -8.615850e-47 |
| Msa0673270 | Msa1004890 | 0.803993 | 2.673268e-49 | -8.615850e-47 |
| Msa0700920 | Msa1004890 | 0.804049 | 2.603526e-49 | -8.615850e-47 |
| Msa0703440 | Msa1004890 | 0.814059 | 1.868322e-51 | -8.615850e-47 |
| Msa0705990 | Msa1004890 | 0.831136 | 1.980872e-55 | -8.615850e-47 |
| Msa0142500 | Msa1004890 | 0.820264 | 7.520157e-53 | -8.615850e-47 |
| Msa0183420 | Msa1004890 | 0.804476 | 2.121519e-49 | -8.615850e-47 |
| Msa0197610 | Msa1004890 | 0.812573 | 3.961713e-51 | -8.615850e-47 |
| Msa0202930 | Msa1004890 | 0.808686 | 2.741605e-50 | -8.615850e-47 |
| Msa0223230 | Msa1004890 | 0.804468 | 2.129229e-49 | -8.615850e-47 |
| Msa0389910 | Msa1004890 | 0.814186 | 1.751360e-51 | -8.615850e-47 |
| Msa0422180 | Msa1004890 | 0.834248 | 3.345168e-56 | -8.615850e-47 |
| Msa0450480 | Msa1004890 | 0.822645 | 2.120883e-53 | -8.615850e-47 |
| Msa0480780 | Msa1004890 | 0.802312 | 5.955964e-49 | -8.615850e-47 |
| Msa1004890 | Msa1063420 | 0.811902 | 5.549400e-51 | -8.615850e-47 |
| Msa1004890 | Msa1143020 | 0.833454 | 5.282833e-56 | -8.615850e-47 |
| Msa1004890 | Msa1250110 | 0.826904 | 2.099818e-54 | -8.615850e-47 |
| Msa1004890 | Msa1250730 | 0.818374 | 2.026860e-52 | -8.615850e-47 |
| Msa1004890 | Msa1307180 | 0.806027 | 1.003903e-49 | -8.615850e-47 |
| Msa1004890 | Msa1316360 | 0.802632 | 5.117087e-49 | -8.615850e-47 |
| Msa1004890 | Msa1349520 | 0.812052 | 5.145734e-51 | -8.615850e-47 |
| Msa1004890 | Msa1359560 | 0.811842 | 5.718311e-51 | -8.615850e-47 |
| Msa1004890 | Msa1381480 | 0.815549 | 8.734479e-52 | -8.615850e-47 |
| Msa1004890 | Msa1400120 | 0.805017 | 1.635164e-49 | -8.615850e-47 |
| Msa1004890 | Msa1407970 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
| Msa1004890 | Msa1437270 | 0.829039 | 6.433727e-55 | -8.615850e-47 |
| Msa1004890 | Msa1462360 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0241140 | Msa1004890 | 0.808991 | 2.359506e-50 | -8.615850e-47 |
| Msa0285330 | Msa1004890 | 0.809420 | 1.908851e-50 | -8.615850e-47 |
| Msa0324240 | Msa1004890 | 0.800908 | 1.155959e-48 | -8.615850e-47 |
| Msa0347950 | Msa1004890 | 0.802473 | 5.517508e-49 | -8.615850e-47 |
| Msa0514610 | Msa1004890 | 0.809578 | 1.765920e-50 | -8.615850e-47 |
| Msa0521670 | Msa1004890 | 0.806914 | 6.526516e-50 | -8.615850e-47 |
| Msa0569780 | Msa1004890 | 0.827473 | 1.534640e-54 | -8.615850e-47 |
| Msa0600080 | Msa1004890 | 0.803978 | 2.693376e-49 | -8.615850e-47 |
| Msa0945240 | Msa1004890 | 0.805280 | 1.440612e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004890 | MtrunA17_Chr7g0214971 | 96.089 | 179 | 7 | 0 | 1 | 179 | 1 | 179 | 1.73e-121 | 340 |
| Msa1004890 | MtrunA17_Chr1g0156831 | 78.771 | 179 | 32 | 2 | 1 | 179 | 2 | 174 | 9.56e-86 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004890 | AT5G49210.2 | 54.545 | 176 | 78 | 1 | 4 | 179 | 22 | 195 | 5.00e-61 | 188 |
| Msa1004890 | AT5G49210.1 | 54.545 | 176 | 78 | 1 | 4 | 179 | 22 | 195 | 5.00e-61 | 188 |
| Msa1004890 | AT5G49210.3 | 58.824 | 119 | 47 | 1 | 6 | 124 | 24 | 140 | 3.10e-42 | 138 |
Find 33 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTCCAAGTTCCTTTGT+TGG | 0.303329 | 7_1:+2547522 | Msa1004890:CDS |
| ATGCAATAAGTCTTTCTTCT+CGG | 0.362118 | 7_1:-2550810 | None:intergenic |
| CAAGTTCCTTTGTTGGAAGC+TGG | 0.378012 | 7_1:+2547529 | Msa1004890:CDS |
| CAGCTTCCAACAAAGGAACT+TGG | 0.378803 | 7_1:-2547528 | None:intergenic |
| TCGCAGAGACTACGCGAAAC+AGG | 0.414242 | 7_1:+2547599 | Msa1004890:CDS |
| AGCTGTGCTTCGGCTTCCTT+AGG | 0.450986 | 7_1:-2547567 | None:intergenic |
| AAGCTGAGCGAGCTGTGCTT+CGG | 0.471340 | 7_1:-2547577 | None:intergenic |
| AACTTGGAGAGAGGAATTTG+TGG | 0.475859 | 7_1:-2547512 | None:intergenic |
| GAGGAAGAAACTTAAGGCTC+AGG | 0.487833 | 7_1:+2547728 | Msa1004890:CDS |
| TGAAGAGAGGAAGAAACTTA+AGG | 0.491990 | 7_1:+2547722 | Msa1004890:CDS |
| GAGCGGAGAAACTTGAAAGT+TGG | 0.497816 | 7_1:+2550753 | Msa1004890:CDS |
| TCGGCTTCCTTAGGATCCCT+CGG | 0.498104 | 7_1:-2547558 | None:intergenic |
| GCAGAAGGATGAGGCTCGTA+AGG | 0.500441 | 7_1:+2547680 | Msa1004890:CDS |
| GGAGAAGCAGCAGAAGGATG+AGG | 0.539862 | 7_1:+2547671 | Msa1004890:CDS |
| CGAAACAGGTGAAAGAGGTT+CGG | 0.552859 | 7_1:+2547613 | Msa1004890:CDS |
| GAAAGCTCCGAGGGATCCTA+AGG | 0.554098 | 7_1:+2547551 | Msa1004890:CDS |
| GAAGGAATACATTCTAGAAG+TGG | 0.556480 | 7_1:+2547635 | Msa1004890:CDS |
| AGCTTTCCAGCTTCCAACAA+AGG | 0.559530 | 7_1:-2547535 | None:intergenic |
| AGAAGTGGAAGCTATGAGGT+TGG | 0.564391 | 7_1:+2547650 | Msa1004890:CDS |
| TTCTAGAAGTGGAAGCTATG+AGG | 0.572283 | 7_1:+2547646 | Msa1004890:CDS |
| CTACGCGAAACAGGTGAAAG+AGG | 0.579011 | 7_1:+2547608 | Msa1004890:CDS |
| GAGGTTGGAGAAGCAGCAGA+AGG | 0.606404 | 7_1:+2547665 | Msa1004890:CDS |
| TGGAAGCTGGAAAGCTCCGA+GGG | 0.608004 | 7_1:+2547542 | Msa1004890:CDS |
| AAGAACTTAGAGCTCAAGAA+CGG | 0.610189 | 7_1:+2547754 | Msa1004890:CDS |
| TGATGAAGCTGAACTCGAGA+AGG | 0.618451 | 7_1:+2550853 | Msa1004890:CDS |
| ACAGGTGAAAGAGGTTCGGA+AGG | 0.622211 | 7_1:+2547617 | Msa1004890:CDS |
| GCATAAACGAAGTTCACTGT+GGG | 0.625769 | 7_1:+2550829 | Msa1004890:CDS |
| CAACAAAGGAACTTGGAGAG+AGG | 0.629937 | 7_1:-2547521 | None:intergenic |
| TTAGAGTTGCGAATGAAGAG+AGG | 0.635837 | 7_1:+2547709 | Msa1004890:CDS |
| GAATCAGTTGAAAGAAAGAG+CGG | 0.655086 | 7_1:+2550736 | Msa1004890:intron |
| TTGGAAGCTGGAAAGCTCCG+AGG | 0.655152 | 7_1:+2547541 | Msa1004890:CDS |
| TGCATAAACGAAGTTCACTG+TGG | 0.666292 | 7_1:+2550828 | Msa1004890:CDS |
| AAGATCATTTGCCACACGCG+CGG | 0.671655 | 7_1:+2547458 | Msa1004890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTAAATTTAAAAAAGT+AGG | + | chr7_1:2548295-2548314 | Msa1004890:intron | 10.0% |
| !! | TAAATTTGACATAATAATTT+AGG | + | chr7_1:2548644-2548663 | Msa1004890:intron | 10.0% |
| !! | TTAAAAAGAAAAAAACTAAA+TGG | + | chr7_1:2549984-2550003 | Msa1004890:intron | 10.0% |
| !! | TATCAATCTAATAAGAATAA+TGG | + | chr7_1:2548718-2548737 | Msa1004890:intron | 15.0% |
| !!! | AAAAAAACTAAATGGATTTT+GGG | + | chr7_1:2549992-2550011 | Msa1004890:intron | 15.0% |
| !!! | ACATATTTTTATAGTAGTTA+AGG | + | chr7_1:2550320-2550339 | Msa1004890:intron | 15.0% |
| !! | AAAAAAAAAAGGACTTACAA+GGG | - | chr7_1:2547808-2547827 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAGGACTTACA+AGG | - | chr7_1:2547809-2547828 | None:intergenic | 20.0% |
| !!! | TTCTTTTCAATTTGTTATTG+TGG | + | chr7_1:2547832-2547851 | Msa1004890:intron | 20.0% |
| !!! | ACTTGTTTATTTTCAATACT+TGG | + | chr7_1:2547964-2547983 | Msa1004890:intron | 20.0% |
| !! | AAGAAATGAAAACAATGTAT+AGG | - | chr7_1:2548074-2548093 | None:intergenic | 20.0% |
| !!! | TGTTTAGTTGTTTTTATGTT+TGG | + | chr7_1:2548328-2548347 | Msa1004890:intron | 20.0% |
| !! | ATTCTTATTAGATTGATACA+AGG | - | chr7_1:2548716-2548735 | None:intergenic | 20.0% |
| !! | TATAGCTGATAAGAAATATA+CGG | + | chr7_1:2548843-2548862 | Msa1004890:intron | 20.0% |
| !!! | CTTTTGTTTTGTTTGATTTA+AGG | + | chr7_1:2549755-2549774 | Msa1004890:intron | 20.0% |
| !! | ACAAGTTAAGAATCTAAAAA+TGG | - | chr7_1:2549912-2549931 | None:intergenic | 20.0% |
| !!! | GAAAAAAACTAAATGGATTT+TGG | + | chr7_1:2549991-2550010 | Msa1004890:intron | 20.0% |
| !!! | AAAAAACTAAATGGATTTTG+GGG | + | chr7_1:2549993-2550012 | Msa1004890:intron | 20.0% |
| !! | AATAGTTATAACTTATATGC+TGG | + | chr7_1:2550061-2550080 | Msa1004890:intron | 20.0% |
| !!! | AGACTTTTTTTTTTTTTGAC+AGG | - | chr7_1:2550174-2550193 | None:intergenic | 20.0% |
| !! | CATAATAAATGTTATGTTGA+GGG | - | chr7_1:2550234-2550253 | None:intergenic | 20.0% |
| !! | ACATAATAAATGTTATGTTG+AGG | - | chr7_1:2550235-2550254 | None:intergenic | 20.0% |
| !!! | TTTCTTTGGTTTAATACTTA+TGG | + | chr7_1:2550297-2550316 | Msa1004890:intron | 20.0% |
| !!! | TATTTTTATAGTAGTTAAGG+TGG | + | chr7_1:2550323-2550342 | Msa1004890:intron | 20.0% |
| !! | AACAAAGACAAAAAATAGAT+CGG | - | chr7_1:2550512-2550531 | None:intergenic | 20.0% |
| ! | ATTAACTTAACCCTAGTAAT+AGG | - | chr7_1:2548271-2548290 | None:intergenic | 25.0% |
| ! | ATTACTAGGGTTAAGTTAAT+CGG | + | chr7_1:2548271-2548290 | Msa1004890:intron | 25.0% |
| ! | TAAAAACAACTAAACACCAT+CGG | - | chr7_1:2548324-2548343 | None:intergenic | 25.0% |
| !!! | TGTTTTTATGTTTGGTAGAT+TGG | + | chr7_1:2548336-2548355 | Msa1004890:intron | 25.0% |
| !! | GTTTTTATGTTTGGTAGATT+GGG | + | chr7_1:2548337-2548356 | Msa1004890:intron | 25.0% |
| !!! | AGAAAGTGTTAAAAAAAGAG+AGG | + | chr7_1:2548669-2548688 | Msa1004890:intron | 25.0% |
| ! | TTCTGTAAATTAGTATACAG+TGG | - | chr7_1:2548919-2548938 | None:intergenic | 25.0% |
| ! | TGAAAAATGTTGAGTTAACA+CGG | - | chr7_1:2548965-2548984 | None:intergenic | 25.0% |
| ! | TTAATAAGCCTCATATTACT+AGG | + | chr7_1:2549167-2549186 | Msa1004890:intron | 25.0% |
| ! | TAATAAGCCTCATATTACTA+GGG | + | chr7_1:2549168-2549187 | Msa1004890:intron | 25.0% |
| ! | AACACCTGATTAACTTAAAT+GGG | - | chr7_1:2549225-2549244 | None:intergenic | 25.0% |
| ! | AAACACCTGATTAACTTAAA+TGG | - | chr7_1:2549226-2549245 | None:intergenic | 25.0% |
| !!! | GTTTCTAGCAGTTATTTATT+TGG | + | chr7_1:2549347-2549366 | Msa1004890:intron | 25.0% |
| ! | CAAAACTATGAGAATACTTT+CGG | - | chr7_1:2549419-2549438 | None:intergenic | 25.0% |
| ! | CAATGTATATTGGATATAAC+TGG | - | chr7_1:2549454-2549473 | None:intergenic | 25.0% |
| !! | CAACAAAATGTTTCTATCTT+TGG | - | chr7_1:2549820-2549839 | None:intergenic | 25.0% |
| !! | CAAAGATAGAAACATTTTGT+TGG | + | chr7_1:2549818-2549837 | Msa1004890:intron | 25.0% |
| ! | TACCCTTGATTTAATTATGA+AGG | + | chr7_1:2549955-2549974 | Msa1004890:intron | 25.0% |
| ! | CACCTTCATAATTAAATCAA+GGG | - | chr7_1:2549960-2549979 | None:intergenic | 25.0% |
| !!! | CTGAATATAGGTTTTTAGTA+TGG | - | chr7_1:2550568-2550587 | None:intergenic | 25.0% |
| TGGAAATTGAATATGCTATG+TGG | + | chr7_1:2547852-2547871 | Msa1004890:intron | 30.0% | |
| ATGTATTGTATTGCATGTTG+TGG | + | chr7_1:2547877-2547896 | Msa1004890:intron | 30.0% | |
| ! | TCAATACTTGGTAGTTAGTT+AGG | + | chr7_1:2547976-2547995 | Msa1004890:intron | 30.0% |
| CAATGTATAGGTTTCATCAA+TGG | - | chr7_1:2548062-2548081 | None:intergenic | 30.0% | |
| ! | TTTTCTTAACACATGTGCAT+TGG | - | chr7_1:2548197-2548216 | None:intergenic | 30.0% |
| TTACTAGGGTTAAGTTAATC+GGG | + | chr7_1:2548272-2548291 | Msa1004890:intron | 30.0% | |
| TTAAAAAAGTAGGAAACCGA+TGG | + | chr7_1:2548305-2548324 | Msa1004890:intron | 30.0% | |
| ! | GTAGGTTTTCTAATTCATAG+AGG | + | chr7_1:2548365-2548384 | Msa1004890:intron | 30.0% |
| ATAGAGGTTATCTATGTGTT+GGG | + | chr7_1:2548381-2548400 | Msa1004890:intron | 30.0% | |
| AGAAAAAGCTTTCATACTCT+CGG | + | chr7_1:2548884-2548903 | Msa1004890:intron | 30.0% | |
| TGCACATGAATTAAGAAAAG+TGG | + | chr7_1:2549108-2549127 | Msa1004890:intron | 30.0% | |
| GAGGCTTATTAACAGAAAAA+TGG | - | chr7_1:2549159-2549178 | None:intergenic | 30.0% | |
| TATTACTAGGGTTTGTGTTA+TGG | + | chr7_1:2549180-2549199 | Msa1004890:intron | 30.0% | |
| ATTACTAGGGTTTGTGTTAT+GGG | + | chr7_1:2549181-2549200 | Msa1004890:intron | 30.0% | |
| TAAAAACAACCGAATGACAT+CGG | - | chr7_1:2549275-2549294 | None:intergenic | 30.0% | |
| !!! | CATTCGGTTGTTTTTATGTT+TGG | + | chr7_1:2549279-2549298 | Msa1004890:intron | 30.0% |
| ! | GTTTTTATGTTTGGTTGCTT+AGG | + | chr7_1:2549288-2549307 | Msa1004890:intron | 30.0% |
| GGTTGATCTCTAATTCATAA+AGG | + | chr7_1:2549316-2549335 | Msa1004890:intron | 30.0% | |
| !! | GCAGTTATTTATTTGGTTCT+AGG | + | chr7_1:2549354-2549373 | Msa1004890:intron | 30.0% |
| !! | AAATGATGGGCAATGTATAT+TGG | - | chr7_1:2549464-2549483 | None:intergenic | 30.0% |
| !!! | ATGATGTCTCTGTTTTAATC+TGG | + | chr7_1:2549621-2549640 | Msa1004890:intron | 30.0% |
| CCACCTTCATAATTAAATCA+AGG | - | chr7_1:2549961-2549980 | None:intergenic | 30.0% | |
| CCTTGATTTAATTATGAAGG+TGG | + | chr7_1:2549958-2549977 | Msa1004890:intron | 30.0% | |
| !! | ATTTCACATTGATAATGTGC+AGG | + | chr7_1:2550346-2550365 | Msa1004890:intron | 30.0% |
| AGAAGTTAGAATATGAAGGT+TGG | - | chr7_1:2550454-2550473 | None:intergenic | 30.0% | |
| GCTTAGAAGTTAGAATATGA+AGG | - | chr7_1:2550458-2550477 | None:intergenic | 30.0% | |
| TGCATAACTGATCTGAATAT+AGG | - | chr7_1:2550580-2550599 | None:intergenic | 30.0% | |
| ! | TTTCTTCTCTTCATGCTTTT+TGG | - | chr7_1:2550789-2550808 | None:intergenic | 30.0% |
| ATGCAATAAGTCTTTCTTCT+CGG | - | chr7_1:2550813-2550832 | None:intergenic | 30.0% | |
| ! | AGAGGAATTTGTGGTTTTCA+CGG | - | chr7_1:2547506-2547525 | None:intergenic | 35.0% |
| ! | GAAGGAATACATTCTAGAAG+TGG | + | chr7_1:2547635-2547654 | Msa1004890:CDS | 35.0% |
| TGAAGAGAGGAAGAAACTTA+AGG | + | chr7_1:2547722-2547741 | Msa1004890:CDS | 35.0% | |
| AAGAACTTAGAGCTCAAGAA+CGG | + | chr7_1:2547754-2547773 | Msa1004890:CDS | 35.0% | |
| TCACTCACTATTATGACTGT+TGG | + | chr7_1:2548026-2548045 | Msa1004890:intron | 35.0% | |
| GTATAGGTTTCATCAATGGT+TGG | - | chr7_1:2548058-2548077 | None:intergenic | 35.0% | |
| GACATACACTTTGATGAAAC+GGG | - | chr7_1:2548121-2548140 | None:intergenic | 35.0% | |
| CGACATACACTTTGATGAAA+CGG | - | chr7_1:2548122-2548141 | None:intergenic | 35.0% | |
| CGTTTCATCAAAGTGTATGT+CGG | + | chr7_1:2548120-2548139 | Msa1004890:intron | 35.0% | |
| !! | AAGTGTATGTCGGTTTAAAC+AGG | + | chr7_1:2548130-2548149 | Msa1004890:intron | 35.0% |
| TGCACATGTGTTAAGAAAAG+TGG | + | chr7_1:2548198-2548217 | Msa1004890:intron | 35.0% | |
| AACTTAACCCTAGTAATAGG+AGG | - | chr7_1:2548268-2548287 | None:intergenic | 35.0% | |
| CATAGAGGTTATCTATGTGT+TGG | + | chr7_1:2548380-2548399 | Msa1004890:intron | 35.0% | |
| TAGAGGTTATCTATGTGTTG+GGG | + | chr7_1:2548382-2548401 | Msa1004890:intron | 35.0% | |
| CTCCTTCCCTATATGTAATA+GGG | + | chr7_1:2548434-2548453 | Msa1004890:intron | 35.0% | |
| !! | GGTTTACAGTAGTGTTGATT+CGG | + | chr7_1:2548591-2548610 | Msa1004890:intron | 35.0% |
| AACTCTGATCTCTTTCACAA+TGG | + | chr7_1:2548614-2548633 | Msa1004890:intron | 35.0% | |
| !! | AATGGAGAGTACTAATCAGT+AGG | + | chr7_1:2548736-2548755 | Msa1004890:intron | 35.0% |
| !! | GCTTTTGATAGCTAGATTTG+AGG | + | chr7_1:2548771-2548790 | Msa1004890:intron | 35.0% |
| !! | GTGTATAATGTTGAGTTGAC+AGG | + | chr7_1:2548819-2548838 | Msa1004890:intron | 35.0% |
| TGAGTTAACACGGTCTTAAA+TGG | - | chr7_1:2548955-2548974 | None:intergenic | 35.0% | |
| !! | TGTCGGTTTAAACAGATTTC+AGG | + | chr7_1:2549032-2549051 | Msa1004890:intron | 35.0% |
| ! | AAAGGGCTCTAACATATTAG+GGG | - | chr7_1:2549079-2549098 | None:intergenic | 35.0% |
| ! | CAAAGGGCTCTAACATATTA+GGG | - | chr7_1:2549080-2549099 | None:intergenic | 35.0% |
| ! | TCAAAGGGCTCTAACATATT+AGG | - | chr7_1:2549081-2549100 | None:intergenic | 35.0% |
| ! | CATGTGCATTGATGATCAAA+GGG | - | chr7_1:2549096-2549115 | None:intergenic | 35.0% |
| ! | TCATGTGCATTGATGATCAA+AGG | - | chr7_1:2549097-2549116 | None:intergenic | 35.0% |
| ACACAAACCCTAGTAATATG+AGG | - | chr7_1:2549178-2549197 | None:intergenic | 35.0% | |
| TTAAATGGGCCCTATCAATT+AGG | - | chr7_1:2549211-2549230 | None:intergenic | 35.0% | |
| AGTTGGATACACGAATAACA+GGG | - | chr7_1:2549393-2549412 | None:intergenic | 35.0% | |
| TGATAAGATCTGGCATAAAC+GGG | - | chr7_1:2549488-2549507 | None:intergenic | 35.0% | |
| CTGATAAGATCTGGCATAAA+CGG | - | chr7_1:2549489-2549508 | None:intergenic | 35.0% | |
| TGATATGAAGCTCGTCATAT+CGG | - | chr7_1:2549559-2549578 | None:intergenic | 35.0% | |
| ACATCATAAATGACGTGCTT+TGG | - | chr7_1:2549608-2549627 | None:intergenic | 35.0% | |
| !! | TTTCTTAACTTGTGCCTTGA+GGG | - | chr7_1:2549797-2549816 | None:intergenic | 35.0% |
| !! | ATTCTTAACTTGTGCCCTTA+GGG | + | chr7_1:2549919-2549938 | Msa1004890:intron | 35.0% |
| !!! | ATTTTGGGGTTGTATAACTG+TGG | + | chr7_1:2550007-2550026 | Msa1004890:intron | 35.0% |
| ACATTCGCTTATGTGTAGTT+AGG | - | chr7_1:2550040-2550059 | None:intergenic | 35.0% | |
| ! | AGCCAGGTTCATTTTACTTT+TGG | - | chr7_1:2550087-2550106 | None:intergenic | 35.0% |
| AAATGAACCTGGCTTAAACT+TGG | + | chr7_1:2550093-2550112 | Msa1004890:intron | 35.0% | |
| GACTCTGCAATATGTTTCTT+TGG | + | chr7_1:2550283-2550302 | Msa1004890:intron | 35.0% | |
| ATTCAGATCAGTTATGCAAG+TGG | + | chr7_1:2550582-2550601 | Msa1004890:intron | 35.0% | |
| GAATCAGTTGAAAGAAAGAG+CGG | + | chr7_1:2550736-2550755 | Msa1004890:intron | 35.0% | |
| AACTTGGAGAGAGGAATTTG+TGG | - | chr7_1:2547515-2547534 | None:intergenic | 40.0% | |
| ! | TTCTAGAAGTGGAAGCTATG+AGG | + | chr7_1:2547646-2547665 | Msa1004890:CDS | 40.0% |
| TTAGAGTTGCGAATGAAGAG+AGG | + | chr7_1:2547709-2547728 | Msa1004890:CDS | 40.0% | |
| TGGTAGTTAGTTAGGTGTTC+CGG | + | chr7_1:2547984-2548003 | Msa1004890:intron | 40.0% | |
| TAAACCTAAAAAGAACCCGC+CGG | - | chr7_1:2548006-2548025 | None:intergenic | 40.0% | |
| ATACACTTTGATGAAACGGG+CGG | - | chr7_1:2548118-2548137 | None:intergenic | 40.0% | |
| !! | TGTCGGTTTAAACAGGTTTC+AGG | + | chr7_1:2548137-2548156 | Msa1004890:intron | 40.0% |
| ! | ACACATGTGCATTGGTCAAA+GGG | - | chr7_1:2548189-2548208 | None:intergenic | 40.0% |
| ! | AACACATGTGCATTGGTCAA+AGG | - | chr7_1:2548190-2548209 | None:intergenic | 40.0% |
| CCTATTACATATAGGGAAGG+AGG | - | chr7_1:2548436-2548455 | None:intergenic | 40.0% | |
| CCTCCTTCCCTATATGTAAT+AGG | + | chr7_1:2548433-2548452 | Msa1004890:intron | 40.0% | |
| TGCCCTATTACATATAGGGA+AGG | - | chr7_1:2548439-2548458 | None:intergenic | 40.0% | |
| GCTCTGCCCTATTACATATA+GGG | - | chr7_1:2548443-2548462 | None:intergenic | 40.0% | |
| TGCTCTGCCCTATTACATAT+AGG | - | chr7_1:2548444-2548463 | None:intergenic | 40.0% | |
| TATGTAATAGGGCAGAGCAT+CGG | + | chr7_1:2548445-2548464 | Msa1004890:intron | 40.0% | |
| AAACTGTCCATTTGTGCCAA+TGG | + | chr7_1:2548515-2548534 | Msa1004890:intron | 40.0% | |
| TCCATTTGTGCCAATGGTTT+AGG | + | chr7_1:2548521-2548540 | Msa1004890:intron | 40.0% | |
| ACCTAAACCATTGGCACAAA+TGG | - | chr7_1:2548525-2548544 | None:intergenic | 40.0% | |
| ATTTGTGCCAATGGTTTAGG+TGG | + | chr7_1:2548524-2548543 | Msa1004890:intron | 40.0% | |
| TTTGTGCCAATGGTTTAGGT+GGG | + | chr7_1:2548525-2548544 | Msa1004890:intron | 40.0% | |
| GTACTAATCAGTAGGTGAGA+CGG | + | chr7_1:2548744-2548763 | Msa1004890:intron | 40.0% | |
| AGCTTTCATACTCTCGGTTA+TGG | + | chr7_1:2548890-2548909 | Msa1004890:intron | 40.0% | |
| ACATACACTGATGAAACAGG+CGG | - | chr7_1:2549015-2549034 | None:intergenic | 40.0% | |
| CCTGTTTCATCAGTGTATGT+CGG | + | chr7_1:2549015-2549034 | Msa1004890:intron | 40.0% | |
| GGTTTAAACAGATTTCAGGC+TGG | + | chr7_1:2549036-2549055 | Msa1004890:intron | 40.0% | |
| TATGGGCAGACCTAATTGAT+AGG | + | chr7_1:2549198-2549217 | Msa1004890:intron | 40.0% | |
| ATGGGCAGACCTAATTGATA+GGG | + | chr7_1:2549199-2549218 | Msa1004890:intron | 40.0% | |
| ! | AGGGCCCATTTAAGTTAATC+AGG | + | chr7_1:2549218-2549237 | Msa1004890:intron | 40.0% |
| GATAGGAAACCGATGTCATT+CGG | + | chr7_1:2549263-2549282 | Msa1004890:intron | 40.0% | |
| TGTTTGGTTGCTTAGGAGAA+AGG | + | chr7_1:2549295-2549314 | Msa1004890:intron | 40.0% | |
| GAGTTGGATACACGAATAAC+AGG | - | chr7_1:2549394-2549413 | None:intergenic | 40.0% | |
| GAGAATACTTTCGGAAGAGT+TGG | - | chr7_1:2549410-2549429 | None:intergenic | 40.0% | |
| GATAAGATCTGGCATAAACG+GGG | - | chr7_1:2549487-2549506 | None:intergenic | 40.0% | |
| ! | TCGTCATATCGGTTATAAGG+AGG | - | chr7_1:2549548-2549567 | None:intergenic | 40.0% |
| ! | AGCTCGTCATATCGGTTATA+AGG | - | chr7_1:2549551-2549570 | None:intergenic | 40.0% |
| ! | GTTACCAGGCAGGTAATTTT+GGG | - | chr7_1:2549696-2549715 | None:intergenic | 40.0% |
| ! | AGTTACCAGGCAGGTAATTT+TGG | - | chr7_1:2549697-2549716 | None:intergenic | 40.0% |
| AAATTACCTGCCTGGTAACT+TGG | + | chr7_1:2549697-2549716 | Msa1004890:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr7_1:2549780-2549799 | Msa1004890:intron | 40.0% |
| !! | GTTTCTTAACTTGTGCCTTG+AGG | - | chr7_1:2549798-2549817 | None:intergenic | 40.0% |
| !! | GATTCTTAACTTGTGCCCTT+AGG | + | chr7_1:2549918-2549937 | Msa1004890:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTAA+GGG | - | chr7_1:2549936-2549955 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTA+AGG | - | chr7_1:2549937-2549956 | None:intergenic | 40.0% |
| GGCCAAAAGTAAAATGAACC+TGG | + | chr7_1:2550082-2550101 | Msa1004890:intron | 40.0% | |
| GTTTAGACCAAGTTTAAGCC+AGG | - | chr7_1:2550103-2550122 | None:intergenic | 40.0% | |
| ! | ATGAAGGTTGGTTATCTGTC+AGG | - | chr7_1:2550442-2550461 | None:intergenic | 40.0% |
| TCAGTTATGCAAGTGGAACA+CGG | + | chr7_1:2550589-2550608 | Msa1004890:intron | 40.0% | |
| TGCATAAACGAAGTTCACTG+TGG | + | chr7_1:2550828-2550847 | Msa1004890:CDS | 40.0% | |
| GCATAAACGAAGTTCACTGT+GGG | + | chr7_1:2550829-2550848 | Msa1004890:CDS | 40.0% | |
| ! | GGAATTTGTGGTTTTCACGG+TGG | - | chr7_1:2547503-2547522 | None:intergenic | 45.0% |
| CAACAAAGGAACTTGGAGAG+AGG | - | chr7_1:2547524-2547543 | None:intergenic | 45.0% | |
| CTCTCTCCAAGTTCCTTTGT+TGG | + | chr7_1:2547522-2547541 | Msa1004890:CDS | 45.0% | |
| CAGCTTCCAACAAAGGAACT+TGG | - | chr7_1:2547531-2547550 | None:intergenic | 45.0% | |
| CAAGTTCCTTTGTTGGAAGC+TGG | + | chr7_1:2547529-2547548 | Msa1004890:CDS | 45.0% | |
| AGCTTTCCAGCTTCCAACAA+AGG | - | chr7_1:2547538-2547557 | None:intergenic | 45.0% | |
| CGAAACAGGTGAAAGAGGTT+CGG | + | chr7_1:2547613-2547632 | Msa1004890:CDS | 45.0% | |
| AGAAGTGGAAGCTATGAGGT+TGG | + | chr7_1:2547650-2547669 | Msa1004890:CDS | 45.0% | |
| GAGGAAGAAACTTAAGGCTC+AGG | + | chr7_1:2547728-2547747 | Msa1004890:CDS | 45.0% | |
| GCATGTTGTGGATGAATTCG+AGG | + | chr7_1:2547889-2547908 | Msa1004890:intron | 45.0% | |
| TAGTTAGTTAGGTGTTCCGG+CGG | + | chr7_1:2547987-2548006 | Msa1004890:intron | 45.0% | |
| CGGTTTAAACAGGTTTCAGG+CGG | + | chr7_1:2548140-2548159 | Msa1004890:intron | 45.0% | |
| GGTTTAAACAGGTTTCAGGC+GGG | + | chr7_1:2548141-2548160 | Msa1004890:intron | 45.0% | |
| TTAGCAGGCCTCCTATTACT+AGG | + | chr7_1:2548257-2548276 | Msa1004890:intron | 45.0% | |
| TAGCAGGCCTCCTATTACTA+GGG | + | chr7_1:2548258-2548277 | Msa1004890:intron | 45.0% | |
| TTGGTAGATTGGGAGAGAGT+AGG | + | chr7_1:2548347-2548366 | Msa1004890:intron | 45.0% | |
| !! | GCAGAGCATCGGATGTAATA+GGG | + | chr7_1:2548456-2548475 | Msa1004890:intron | 45.0% |
| ! | TAATAGGGCAGAGCATCAGA+TGG | + | chr7_1:2548471-2548490 | Msa1004890:intron | 45.0% |
| ! | AATAGGGCAGAGCATCAGAT+GGG | + | chr7_1:2548472-2548491 | Msa1004890:intron | 45.0% |
| CCGACATACACTGATGAAAC+AGG | - | chr7_1:2549018-2549037 | None:intergenic | 45.0% | |
| GGCATAAACGGGGAAATGAT+GGG | - | chr7_1:2549477-2549496 | None:intergenic | 45.0% | |
| TGGCATAAACGGGGAAATGA+TGG | - | chr7_1:2549478-2549497 | None:intergenic | 45.0% | |
| CTGCTGACACTGATAAGATC+TGG | - | chr7_1:2549498-2549517 | None:intergenic | 45.0% | |
| CAGATCTTATCAGTGTCAGC+AGG | + | chr7_1:2549496-2549515 | Msa1004890:intron | 45.0% | |
| ! | GACGTGCTTTGGATTTGAAC+AGG | - | chr7_1:2549597-2549616 | None:intergenic | 45.0% |
| !! | TCTGGCTTTGCACATGACAT+TGG | + | chr7_1:2549639-2549658 | Msa1004890:intron | 45.0% |
| ATGACCCAAAATTACCTGCC+TGG | + | chr7_1:2549689-2549708 | Msa1004890:intron | 45.0% | |
| ACTGTGTGATCCAAGTTACC+AGG | - | chr7_1:2549710-2549729 | None:intergenic | 45.0% | |
| GAGCGGAGAAACTTGAAAGT+TGG | + | chr7_1:2550753-2550772 | Msa1004890:CDS | 45.0% | |
| TGATGAAGCTGAACTCGAGA+AGG | + | chr7_1:2550853-2550872 | Msa1004890:CDS | 45.0% | |
| !! | AAAAGAAAAAAAAAAAAAAA+AGG | - | chr7_1:2547819-2547838 | None:intergenic | 5.0% |
| !! | TAAATAAATAAATAAAAGAT+AGG | + | chr7_1:2549246-2549265 | Msa1004890:intron | 5.0% |
| AAGATCATTTGCCACACGCG+CGG | + | chr7_1:2547458-2547477 | Msa1004890:CDS | 50.0% | |
| ! | GGTTTTCACGGTGGTTGTTG+TGG | - | chr7_1:2547494-2547513 | None:intergenic | 50.0% |
| CTACGCGAAACAGGTGAAAG+AGG | + | chr7_1:2547608-2547627 | Msa1004890:CDS | 50.0% | |
| ACAGGTGAAAGAGGTTCGGA+AGG | + | chr7_1:2547617-2547636 | Msa1004890:CDS | 50.0% | |
| AGTTAGTTAGGTGTTCCGGC+GGG | + | chr7_1:2547988-2548007 | Msa1004890:intron | 50.0% | |
| !! | TGTTCCGGCGGGTTCTTTTT+AGG | + | chr7_1:2547999-2548018 | Msa1004890:intron | 50.0% |
| GGCGGATCTAGACGATTGTT+GGG | - | chr7_1:2548100-2548119 | None:intergenic | 50.0% | |
| TCCGCCATTTGTCTGTTAGC+AGG | + | chr7_1:2548242-2548261 | Msa1004890:intron | 50.0% | |
| GCCTGCTAACAGACAAATGG+CGG | - | chr7_1:2548246-2548265 | None:intergenic | 50.0% | |
| GAGGCCTGCTAACAGACAAA+TGG | - | chr7_1:2548249-2548268 | None:intergenic | 50.0% | |
| !! | GGCAGAGCATCGGATGTAAT+AGG | + | chr7_1:2548455-2548474 | Msa1004890:intron | 50.0% |
| ! | GAGCATCAGATGGGTTTGGT+CGG | + | chr7_1:2548481-2548500 | Msa1004890:intron | 50.0% |
| ! | CAGATGGGTTTGGTCGGTTT+CGG | + | chr7_1:2548487-2548506 | Msa1004890:intron | 50.0% |
| ! | GTTAGGCGGGTGGATTTCTT+CGG | + | chr7_1:2548570-2548589 | Msa1004890:intron | 50.0% |
| !! | TGAAACAGGCGGCTCTAGAT+AGG | - | chr7_1:2549004-2549023 | None:intergenic | 50.0% |
| TGTGATCCAAGTTACCAGGC+AGG | - | chr7_1:2549706-2549725 | None:intergenic | 50.0% | |
| TTGGAAGCTGGAAAGCTCCG+AGG | + | chr7_1:2547541-2547560 | Msa1004890:CDS | 55.0% | |
| TGGAAGCTGGAAAGCTCCGA+GGG | + | chr7_1:2547542-2547561 | Msa1004890:CDS | 55.0% | |
| GAAAGCTCCGAGGGATCCTA+AGG | + | chr7_1:2547551-2547570 | Msa1004890:CDS | 55.0% | |
| TCGGCTTCCTTAGGATCCCT+CGG | - | chr7_1:2547561-2547580 | None:intergenic | 55.0% | |
| AGCTGTGCTTCGGCTTCCTT+AGG | - | chr7_1:2547570-2547589 | None:intergenic | 55.0% | |
| AAGCTGAGCGAGCTGTGCTT+CGG | - | chr7_1:2547580-2547599 | None:intergenic | 55.0% | |
| TCGCAGAGACTACGCGAAAC+AGG | + | chr7_1:2547599-2547618 | Msa1004890:CDS | 55.0% | |
| GAGGTTGGAGAAGCAGCAGA+AGG | + | chr7_1:2547665-2547684 | Msa1004890:CDS | 55.0% | |
| GGAGAAGCAGCAGAAGGATG+AGG | + | chr7_1:2547671-2547690 | Msa1004890:CDS | 55.0% | |
| GCAGAAGGATGAGGCTCGTA+AGG | + | chr7_1:2547680-2547699 | Msa1004890:CDS | 55.0% | |
| GGGCGGATCTAGACGATTGT+TGG | - | chr7_1:2548101-2548120 | None:intergenic | 55.0% | |
| ! | GGCAGAGCATCAGATGGGTT+TGG | + | chr7_1:2548477-2548496 | Msa1004890:intron | 55.0% |
| GTGCCAATGGTTTAGGTGGG+TGG | + | chr7_1:2548528-2548547 | Msa1004890:intron | 55.0% | |
| CCAATGGTTTAGGTGGGTGG+CGG | + | chr7_1:2548531-2548550 | Msa1004890:intron | 55.0% | |
| CAATGGTTTAGGTGGGTGGC+GGG | + | chr7_1:2548532-2548551 | Msa1004890:intron | 55.0% | |
| !! | AGGCGGCTCTAGATAGGTGA+TGG | - | chr7_1:2548998-2549017 | None:intergenic | 55.0% |
| GTGTGAATTAGCCGCGCGTG+TGG | - | chr7_1:2547472-2547491 | None:intergenic | 60.0% | |
| CCGCCACCCACCTAAACCAT+TGG | - | chr7_1:2548534-2548553 | None:intergenic | 60.0% | |
| !! | GTTTAGGTGGGTGGCGGGTT+CGG | + | chr7_1:2548537-2548556 | Msa1004890:intron | 60.0% |
| !! | GGTTCGGTGGATGGCGGGTT+AGG | + | chr7_1:2548553-2548572 | Msa1004890:intron | 65.0% |
| !! | TCGGTGGATGGCGGGTTAGG+CGG | + | chr7_1:2548556-2548575 | Msa1004890:intron | 65.0% |
| !! | TAGGTGGGTGGCGGGTTCGG+TGG | + | chr7_1:2548540-2548559 | Msa1004890:intron | 70.0% |
| !! | TGGGTGGCGGGTTCGGTGGA+TGG | + | chr7_1:2548544-2548563 | Msa1004890:intron | 70.0% |
| !! | GTGGCGGGTTCGGTGGATGG+CGG | + | chr7_1:2548547-2548566 | Msa1004890:intron | 70.0% |
| !! | TGGCGGGTTCGGTGGATGGC+GGG | + | chr7_1:2548548-2548567 | Msa1004890:intron | 70.0% |
| !! | CGGTGGATGGCGGGTTAGGC+GGG | + | chr7_1:2548557-2548576 | Msa1004890:intron | 70.0% |
| !! | TGGATGGCGGGTTAGGCGGG+TGG | + | chr7_1:2548560-2548579 | Msa1004890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 2547441 | 2550913 | 2547441 | ID=Msa1004890;Name=Msa1004890 |
| chr7_1 | mRNA | 2547441 | 2550913 | 2547441 | ID=Msa1004890-mRNA-1;Parent=Msa1004890;Name=Msa1004890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|179 |
| chr7_1 | exon | 2547441 | 2547809 | 2547441 | ID=Msa1004890-mRNA-1:exon:1014;Parent=Msa1004890-mRNA-1 |
| chr7_1 | exon | 2550743 | 2550913 | 2550743 | ID=Msa1004890-mRNA-1:exon:1015;Parent=Msa1004890-mRNA-1 |
| chr7_1 | CDS | 2547441 | 2547809 | 2547441 | ID=Msa1004890-mRNA-1:cds;Parent=Msa1004890-mRNA-1 |
| chr7_1 | CDS | 2550743 | 2550913 | 2550743 | ID=Msa1004890-mRNA-1:cds;Parent=Msa1004890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
