AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105520 MtrunA17_Chr1g0160831 100.000 141 0 0 1 141 1 141 6.12e-103 290
Msa0105520 MtrunA17_Chr8g0376391 66.912 136 39 5 2 136 49 179 1.28e-54 169
Msa0105520 MtrunA17_Chr3g0110941 53.030 132 50 5 7 133 7 131 5.29e-39 128
Msa0105520 MtrunA17_Chr3g0110951 50.355 141 58 6 7 141 7 141 7.40e-37 123
Msa0105520 MtrunA17_Chr5g0434801 56.452 62 27 0 18 79 41 102 1.49e-19 78.6
Msa0105520 MtrunA17_Chr2g0320881 32.710 107 69 1 18 121 60 166 1.43e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105520 AT1G70780.1 58.042 143 54 4 1 141 2 140 4.01e-49 154
Msa0105520 AT1G23150.1 53.378 148 55 7 1 141 1 141 5.33e-40 131
Msa0105520 AT5G37730.1 48.980 98 45 2 8 101 3 99 9.46e-26 96.3

Find 93 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGATCTGAGGGAAATTT+TGG 0.095799 1_3:-14094635 None:intergenic
TCTTGGCTGTGTTTGTTTCT+AGG 0.129409 1_3:+14096158 Msa0105520:three_prime_UTR
GAGGAAAATTGTTGAAAATT+AGG 0.131770 1_3:-14094819 None:intergenic
ATTGGAGAAGGATTCAAATT+TGG 0.147422 1_3:-14094557 None:intergenic
ATTAATGGGAAGAAACTTTA+AGG 0.182708 1_3:-14096054 None:intergenic
TGAAGCTTTCTTATTATATC+TGG 0.204018 1_3:+14096331 Msa0105520:three_prime_UTR
ATCTCAATTTGATCGATTAA+TGG 0.211600 1_3:-14096069 None:intergenic
GTATTCCATCAATAGTTAAA+TGG 0.265178 1_3:-14096270 None:intergenic
AGGAAAATTGTTGAAAATTA+GGG 0.269223 1_3:-14094818 None:intergenic
GGTTAGGGTTTGGATGAATT+AGG 0.277202 1_3:-14094797 None:intergenic
GTTAGGGTTTGGATGAATTA+GGG 0.294377 1_3:-14094796 None:intergenic
TCTCAATTTGATCGATTAAT+GGG 0.318608 1_3:-14096068 None:intergenic
GTGCAGCGGCTTTGAGTCCT+TGG 0.325626 1_3:+14095882 Msa0105520:intron
TTGGAGAAGGATTCAAATTT+GGG 0.326169 1_3:-14094556 None:intergenic
TTTCTCTATTGCCCTCATCT+TGG 0.333131 1_3:+14095179 Msa0105520:CDS
AATTGTTGAAAATTAGGGTT+AGG 0.334308 1_3:-14094813 None:intergenic
GAGACAACAACTTTGAATTC+TGG 0.346200 1_3:+14096203 Msa0105520:three_prime_UTR
ATAAGCCATTTAACTATTGA+TGG 0.354589 1_3:+14096265 Msa0105520:three_prime_UTR
CAATGCTTTATACAATTGTT+TGG 0.359784 1_3:+14096115 Msa0105520:three_prime_UTR
AAGGATTCAAATTTGGGCTT+AGG 0.360904 1_3:-14094550 None:intergenic
GAATTCAAAGTTGTTGTCTC+TGG 0.363047 1_3:-14096200 None:intergenic
ATCAATGTGCTTGGAAGTGC+TGG 0.373268 1_3:+14095038 Msa0105520:CDS
AAGAAAATAACAAGAGGAAA+AGG 0.379169 1_3:-14094596 None:intergenic
GGGGTTATATAGTTCTCTAT+TGG 0.382108 1_3:-14094575 None:intergenic
GAAGGGAGATTACCTGTCTT+GGG 0.392071 1_3:+14095137 Msa0105520:CDS
AGAACGCTCGCCGTTGTTGA+AGG 0.413496 1_3:-14094706 None:intergenic
AGAAAATAACAAGAGGAAAA+GGG 0.414932 1_3:-14094595 None:intergenic
CCTTTCGCTTCTTGCATGCA+AGG 0.415815 1_3:+14094745 Msa0105520:five_prime_UTR
AGGATTCAAATTTGGGCTTA+GGG 0.417682 1_3:-14094549 None:intergenic
TGCCCTCATCTTGGATCTGA+TGG 0.418130 1_3:+14095188 Msa0105520:CDS
TGAAAATTAGGGTTAGGGTT+TGG 0.419173 1_3:-14094807 None:intergenic
ATCGATCAAATTGAGATTGT+GGG 0.437120 1_3:+14096075 Msa0105520:exon
GGGAAGAAACTTTAAGGTTG+AGG 0.439231 1_3:-14096048 None:intergenic
TTGAGTCCTTGGGATAAAAT+CGG 0.442562 1_3:+14095893 Msa0105520:CDS
TCGCTTCTTGCATGCAAGGT+TGG 0.450703 1_3:+14094749 Msa0105520:five_prime_UTR
GCATGAAATCGAAGGGGAAA+AGG 0.454661 1_3:-14094672 None:intergenic
TGAAGGGAGATTACCTGTCT+TGG 0.463172 1_3:+14095136 Msa0105520:CDS
TGCAAGAAGCGAAAGGGAAA+AGG 0.465142 1_3:-14094738 None:intergenic
ATTGTTGAAAATTAGGGTTA+GGG 0.471693 1_3:-14094812 None:intergenic
AATGAGGCAGCTGCTGAAGA+TGG 0.479908 1_3:+14095968 Msa0105520:CDS
AATCGATCAAATTGAGATTG+TGG 0.490728 1_3:+14096074 Msa0105520:exon
TGCAGCGGCTTTGAGTCCTT+GGG 0.495073 1_3:+14095883 Msa0105520:intron
GCCTCATTTGTAGCCGCCTG+TGG 0.500954 1_3:-14095953 None:intergenic
TTCCCTCAGATCTTCGTGAA+TGG 0.503686 1_3:+14094642 Msa0105520:five_prime_UTR
CGCCGTTGTTGAAGGTGAAA+GGG 0.503940 1_3:-14094698 None:intergenic
TCACTTCCACGCAGGGGAAG+TGG 0.505784 1_3:+14096004 Msa0105520:CDS
CACGCAGGGGAAGTGGTAGT+TGG 0.508737 1_3:+14096011 Msa0105520:CDS
GATTCGATTTGTTGTGAATG+AGG 0.514352 1_3:+14095064 Msa0105520:CDS
TCGCCGTTGTTGAAGGTGAA+AGG 0.514518 1_3:-14094699 None:intergenic
TTGATTAGCATCAATGTGCT+TGG 0.515963 1_3:+14095029 Msa0105520:CDS
GAAAATAACAAGAGGAAAAG+GGG 0.519785 1_3:-14094594 None:intergenic
AGAAACAAACACAGCCAAGA+TGG 0.525952 1_3:-14096155 None:intergenic
ATATAGTTCTCTATTGGAGA+AGG 0.526957 1_3:-14094569 None:intergenic
CATGAAATCGAAGGGGAAAA+GGG 0.527066 1_3:-14094671 None:intergenic
GAAGTGGTAGTTGGAAGTCT+TGG 0.532728 1_3:+14096020 Msa0105520:CDS
GCAAGAAGCGAAAGGGAAAA+GGG 0.534153 1_3:-14094737 None:intergenic
CTGTGATCATTCCCCAAGAC+AGG 0.539887 1_3:-14095149 None:intergenic
CTCCCTTTCACCTTCAACAA+CGG 0.544095 1_3:+14094696 Msa0105520:five_prime_UTR
CTACCATTCACGAAGATCTG+AGG 0.544328 1_3:-14094645 None:intergenic
TCATTCACAACAAATCGAAT+CGG 0.546073 1_3:-14095062 None:intergenic
GGTTGGCATTATCGCTGCCT+CGG 0.546160 1_3:+14094766 Msa0105520:five_prime_UTR
CGTGCTATGCAAGAAGCCAC+AGG 0.559653 1_3:+14095937 Msa0105520:CDS
GCCACAGGCGGCTACAAATG+AGG 0.559935 1_3:+14095952 Msa0105520:CDS
CTTGCATGCAAGAAGCGAAA+GGG 0.561766 1_3:-14094744 None:intergenic
GACTTCATCACTTCCACGCA+GGG 0.568118 1_3:+14095997 Msa0105520:CDS
TACCATTCACGAAGATCTGA+GGG 0.569170 1_3:-14094644 None:intergenic
AAATCGGATCACATGGAGCT+CGG 0.572393 1_3:+14095909 Msa0105520:CDS
TATATCTGGATGTTGTGCGT+TGG 0.578235 1_3:+14096345 Msa0105520:three_prime_UTR
GAAGCGAAAGGGAAAAGGGA+AGG 0.578585 1_3:-14094733 None:intergenic
CCTTGCATGCAAGAAGCGAA+AGG 0.580039 1_3:-14094745 None:intergenic
GCAGCTGCTGAAGATGGAAG+TGG 0.580648 1_3:+14095974 Msa0105520:CDS
CTGAAGTCTTATGCACGTGA+AGG 0.588490 1_3:+14095119 Msa0105520:CDS
TGAAGTCTTATGCACGTGAA+GGG 0.597124 1_3:+14095120 Msa0105520:CDS
AGGGAGCGCATGAAATCGAA+GGG 0.604293 1_3:-14094679 None:intergenic
TCGATCAAATTGAGATTGTG+GGG 0.607990 1_3:+14096076 Msa0105520:three_prime_UTR
CAGCTGCTGAAGATGGAAGT+GGG 0.608652 1_3:+14095975 Msa0105520:CDS
ATTGTGAAGAAAATAACAAG+AGG 0.614674 1_3:-14094602 None:intergenic
TACCATCAGATCCAAGATGA+GGG 0.614833 1_3:-14095190 None:intergenic
TGGGATAAAATCGGATCACA+TGG 0.616833 1_3:+14095902 Msa0105520:CDS
AAGGGAGCGCATGAAATCGA+AGG 0.627976 1_3:-14094680 None:intergenic
TGAATTAGGGGTCGAGACCG+AGG 0.630228 1_3:-14094783 None:intergenic
ATACCATCAGATCCAAGATG+AGG 0.632576 1_3:-14095191 None:intergenic
AAGGGAGATTACCTGTCTTG+GGG 0.634630 1_3:+14095138 Msa0105520:CDS
GGACTTCATCACTTCCACGC+AGG 0.635297 1_3:+14095996 Msa0105520:CDS
ATGCGAATAATGCGAAGAGG+AGG 0.644335 1_3:+14095003 Msa0105520:CDS
CAACTACCACTTCCCCTGCG+TGG 0.647554 1_3:-14096010 None:intergenic
TTAGGGTTTGGATGAATTAG+GGG 0.662766 1_3:-14094795 None:intergenic
TCAATGTGCTTGGAAGTGCT+GGG 0.680964 1_3:+14095039 Msa0105520:CDS
AGAATGCGAATAATGCGAAG+AGG 0.692570 1_3:+14095000 Msa0105520:CDS
GCTATGCAAGAAGCCACAGG+CGG 0.698284 1_3:+14095940 Msa0105520:CDS
ACTTCATCACTTCCACGCAG+GGG 0.703334 1_3:+14095998 Msa0105520:CDS
GAATGAGGAAGAGCTTGTTG+AGG 0.755960 1_3:+14095079 Msa0105520:CDS
GGGAGCGCATGAAATCGAAG+GGG 0.756178 1_3:-14094678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAAACATAAGTTTA+TGG + chr1_3:14095767-14095786 Msa0105520:intron 15.0%
!!! TTCTGATTTTTTTATGTATT+TGG + chr1_3:14096240-14096259 Msa0105520:three_prime_UTR 15.0%
!! AACAATTAAACATAAGTTTA+TGG + chr1_3:14095767-14095786 Msa0105520:intron 15.0%
!!! TTCTGATTTTTTTATGTATT+TGG + chr1_3:14096240-14096259 Msa0105520:three_prime_UTR 15.0%
!! AGGAAAATTGTTGAAAATTA+GGG - chr1_3:14094821-14094840 None:intergenic 20.0%
!!! TGAATTTTTATGAAAGAATG+AGG - chr1_3:14094841-14094860 None:intergenic 20.0%
!! TCTATCTTCATAAACAATAT+TGG - chr1_3:14095296-14095315 None:intergenic 20.0%
!! AGGAAAATTGTTGAAAATTA+GGG - chr1_3:14094821-14094840 None:intergenic 20.0%
!!! TGAATTTTTATGAAAGAATG+AGG - chr1_3:14094841-14094860 None:intergenic 20.0%
!! TCTATCTTCATAAACAATAT+TGG - chr1_3:14095296-14095315 None:intergenic 20.0%
! AGAAAATAACAAGAGGAAAA+GGG - chr1_3:14094598-14094617 None:intergenic 25.0%
! AAGAAAATAACAAGAGGAAA+AGG - chr1_3:14094599-14094618 None:intergenic 25.0%
! ATTGTGAAGAAAATAACAAG+AGG - chr1_3:14094605-14094624 None:intergenic 25.0%
! ATTGTTGAAAATTAGGGTTA+GGG - chr1_3:14094815-14094834 None:intergenic 25.0%
! AATTGTTGAAAATTAGGGTT+AGG - chr1_3:14094816-14094835 None:intergenic 25.0%
! GAGGAAAATTGTTGAAAATT+AGG - chr1_3:14094822-14094841 None:intergenic 25.0%
!!! AATTGCGTTTTTAGATTCTT+GGG + chr1_3:14094896-14094915 Msa0105520:five_prime_UTR 25.0%
!! TAGAGATGAATGAAAAGTAT+AGG + chr1_3:14095316-14095335 Msa0105520:intron 25.0%
!!! TTTTTTCAACAAACAAGAGT+CGG - chr1_3:14095525-14095544 None:intergenic 25.0%
!! TCTTGTTTGTTGAAAAAACT+TGG + chr1_3:14095527-14095546 Msa0105520:intron 25.0%
! TTGAAAAAACTTGGAAAACT+TGG + chr1_3:14095536-14095555 Msa0105520:intron 25.0%
! AATCACATATTTCACAGTTT+AGG - chr1_3:14095587-14095606 None:intergenic 25.0%
! AAACTGTGAAATATGTGATT+AGG + chr1_3:14095587-14095606 Msa0105520:intron 25.0%
!!! TCTTTTGACTTATTAGATTG+TGG + chr1_3:14095736-14095755 Msa0105520:intron 25.0%
! GCATTAAAAAACAAGTATGA+TGG - chr1_3:14095810-14095829 None:intergenic 25.0%
! ATTAATGGGAAGAAACTTTA+AGG - chr1_3:14096057-14096076 None:intergenic 25.0%
! TCTCAATTTGATCGATTAAT+GGG - chr1_3:14096071-14096090 None:intergenic 25.0%
! ATCTCAATTTGATCGATTAA+TGG - chr1_3:14096072-14096091 None:intergenic 25.0%
! CAATGCTTTATACAATTGTT+TGG + chr1_3:14096115-14096134 Msa0105520:three_prime_UTR 25.0%
! ATAAGCCATTTAACTATTGA+TGG + chr1_3:14096265-14096284 Msa0105520:three_prime_UTR 25.0%
! GTATTCCATCAATAGTTAAA+TGG - chr1_3:14096273-14096292 None:intergenic 25.0%
!! TTTTGCATTTTGCCAATTTT+TGG + chr1_3:14096306-14096325 Msa0105520:three_prime_UTR 25.0%
! TGAAGCTTTCTTATTATATC+TGG + chr1_3:14096331-14096350 Msa0105520:three_prime_UTR 25.0%
! AGAAAATAACAAGAGGAAAA+GGG - chr1_3:14094598-14094617 None:intergenic 25.0%
! AAGAAAATAACAAGAGGAAA+AGG - chr1_3:14094599-14094618 None:intergenic 25.0%
! ATTGTGAAGAAAATAACAAG+AGG - chr1_3:14094605-14094624 None:intergenic 25.0%
! ATTGTTGAAAATTAGGGTTA+GGG - chr1_3:14094815-14094834 None:intergenic 25.0%
! AATTGTTGAAAATTAGGGTT+AGG - chr1_3:14094816-14094835 None:intergenic 25.0%
! GAGGAAAATTGTTGAAAATT+AGG - chr1_3:14094822-14094841 None:intergenic 25.0%
!!! AATTGCGTTTTTAGATTCTT+GGG + chr1_3:14094896-14094915 Msa0105520:five_prime_UTR 25.0%
!! TAGAGATGAATGAAAAGTAT+AGG + chr1_3:14095316-14095335 Msa0105520:intron 25.0%
!!! TTTTTTCAACAAACAAGAGT+CGG - chr1_3:14095525-14095544 None:intergenic 25.0%
!! TCTTGTTTGTTGAAAAAACT+TGG + chr1_3:14095527-14095546 Msa0105520:intron 25.0%
! TTGAAAAAACTTGGAAAACT+TGG + chr1_3:14095536-14095555 Msa0105520:intron 25.0%
! AATCACATATTTCACAGTTT+AGG - chr1_3:14095587-14095606 None:intergenic 25.0%
! AAACTGTGAAATATGTGATT+AGG + chr1_3:14095587-14095606 Msa0105520:intron 25.0%
!!! TCTTTTGACTTATTAGATTG+TGG + chr1_3:14095736-14095755 Msa0105520:intron 25.0%
! GCATTAAAAAACAAGTATGA+TGG - chr1_3:14095810-14095829 None:intergenic 25.0%
! ATTAATGGGAAGAAACTTTA+AGG - chr1_3:14096057-14096076 None:intergenic 25.0%
! TCTCAATTTGATCGATTAAT+GGG - chr1_3:14096071-14096090 None:intergenic 25.0%
! ATCTCAATTTGATCGATTAA+TGG - chr1_3:14096072-14096091 None:intergenic 25.0%
! CAATGCTTTATACAATTGTT+TGG + chr1_3:14096115-14096134 Msa0105520:three_prime_UTR 25.0%
! ATAAGCCATTTAACTATTGA+TGG + chr1_3:14096265-14096284 Msa0105520:three_prime_UTR 25.0%
! GTATTCCATCAATAGTTAAA+TGG - chr1_3:14096273-14096292 None:intergenic 25.0%
!! TTTTGCATTTTGCCAATTTT+TGG + chr1_3:14096306-14096325 Msa0105520:three_prime_UTR 25.0%
! TGAAGCTTTCTTATTATATC+TGG + chr1_3:14096331-14096350 Msa0105520:three_prime_UTR 25.0%
TTGGAGAAGGATTCAAATTT+GGG - chr1_3:14094559-14094578 None:intergenic 30.0%
ATTGGAGAAGGATTCAAATT+TGG - chr1_3:14094560-14094579 None:intergenic 30.0%
ATATAGTTCTCTATTGGAGA+AGG - chr1_3:14094572-14094591 None:intergenic 30.0%
GAAAATAACAAGAGGAAAAG+GGG - chr1_3:14094597-14094616 None:intergenic 30.0%
TAAAAACGCAATTGAGGTAA+TGG - chr1_3:14094889-14094908 None:intergenic 30.0%
AGAATCTAAAAACGCAATTG+AGG - chr1_3:14094895-14094914 None:intergenic 30.0%
!! CAATTGCGTTTTTAGATTCT+TGG + chr1_3:14094895-14094914 Msa0105520:five_prime_UTR 30.0%
TCATTCACAACAAATCGAAT+CGG - chr1_3:14095065-14095084 None:intergenic 30.0%
AATGACTTACCTTTGTAGTT+TGG + chr1_3:14095367-14095386 Msa0105520:intron 30.0%
ATCAGAAATGTTAGTTGAAG+TGG + chr1_3:14095455-14095474 Msa0105520:intron 30.0%
!! TTTTTCAACAAACAAGAGTC+GGG - chr1_3:14095524-14095543 None:intergenic 30.0%
ATGTCAATGCAAAATTAGCT+CGG - chr1_3:14095702-14095721 None:intergenic 30.0%
! AACAAGTATGATGGAAGTAA+TGG - chr1_3:14095801-14095820 None:intergenic 30.0%
AATCGATCAAATTGAGATTG+TGG + chr1_3:14096074-14096093 Msa0105520:exon 30.0%
ATCGATCAAATTGAGATTGT+GGG + chr1_3:14096075-14096094 Msa0105520:exon 30.0%
! TTTTACTTAGTGATCCATCT+TGG + chr1_3:14096141-14096160 Msa0105520:three_prime_UTR 30.0%
TTGGAGAAGGATTCAAATTT+GGG - chr1_3:14094559-14094578 None:intergenic 30.0%
ATTGGAGAAGGATTCAAATT+TGG - chr1_3:14094560-14094579 None:intergenic 30.0%
ATATAGTTCTCTATTGGAGA+AGG - chr1_3:14094572-14094591 None:intergenic 30.0%
GAAAATAACAAGAGGAAAAG+GGG - chr1_3:14094597-14094616 None:intergenic 30.0%
TAAAAACGCAATTGAGGTAA+TGG - chr1_3:14094889-14094908 None:intergenic 30.0%
AGAATCTAAAAACGCAATTG+AGG - chr1_3:14094895-14094914 None:intergenic 30.0%
!! CAATTGCGTTTTTAGATTCT+TGG + chr1_3:14094895-14094914 Msa0105520:five_prime_UTR 30.0%
TCATTCACAACAAATCGAAT+CGG - chr1_3:14095065-14095084 None:intergenic 30.0%
AATGACTTACCTTTGTAGTT+TGG + chr1_3:14095367-14095386 Msa0105520:intron 30.0%
ATCAGAAATGTTAGTTGAAG+TGG + chr1_3:14095455-14095474 Msa0105520:intron 30.0%
!! TTTTTCAACAAACAAGAGTC+GGG - chr1_3:14095524-14095543 None:intergenic 30.0%
ATGTCAATGCAAAATTAGCT+CGG - chr1_3:14095702-14095721 None:intergenic 30.0%
! AACAAGTATGATGGAAGTAA+TGG - chr1_3:14095801-14095820 None:intergenic 30.0%
AATCGATCAAATTGAGATTG+TGG + chr1_3:14096074-14096093 Msa0105520:exon 30.0%
ATCGATCAAATTGAGATTGT+GGG + chr1_3:14096075-14096094 Msa0105520:exon 30.0%
! TTTTACTTAGTGATCCATCT+TGG + chr1_3:14096141-14096160 Msa0105520:three_prime_UTR 30.0%
AGGATTCAAATTTGGGCTTA+GGG - chr1_3:14094552-14094571 None:intergenic 35.0%
AAGGATTCAAATTTGGGCTT+AGG - chr1_3:14094553-14094572 None:intergenic 35.0%
GGGGTTATATAGTTCTCTAT+TGG - chr1_3:14094578-14094597 None:intergenic 35.0%
TTAGGGTTTGGATGAATTAG+GGG - chr1_3:14094798-14094817 None:intergenic 35.0%
GTTAGGGTTTGGATGAATTA+GGG - chr1_3:14094799-14094818 None:intergenic 35.0%
TGAAAATTAGGGTTAGGGTT+TGG - chr1_3:14094810-14094829 None:intergenic 35.0%
TTGATTAGCATCAATGTGCT+TGG + chr1_3:14095029-14095048 Msa0105520:CDS 35.0%
!! GATTCGATTTGTTGTGAATG+AGG + chr1_3:14095064-14095083 Msa0105520:CDS 35.0%
ACCTTTGTAGTTTGGACTTA+TGG + chr1_3:14095375-14095394 Msa0105520:intron 35.0%
ACCATAAGTCCAAACTACAA+AGG - chr1_3:14095379-14095398 None:intergenic 35.0%
AAATGTTAGTTGAAGTGGTG+AGG + chr1_3:14095460-14095479 Msa0105520:intron 35.0%
AATGTTAGTTGAAGTGGTGA+GGG + chr1_3:14095461-14095480 Msa0105520:intron 35.0%
TGTTATAAGCAAGTAGTCGA+TGG + chr1_3:14095491-14095510 Msa0105520:intron 35.0%
! TTTTCAACAAACAAGAGTCG+GGG - chr1_3:14095523-14095542 None:intergenic 35.0%
TTGAGTCCTTGGGATAAAAT+CGG + chr1_3:14095893-14095912 Msa0105520:CDS 35.0%
TCGATCAAATTGAGATTGTG+GGG + chr1_3:14096076-14096095 Msa0105520:three_prime_UTR 35.0%
GAATTCAAAGTTGTTGTCTC+TGG - chr1_3:14096203-14096222 None:intergenic 35.0%
GAGACAACAACTTTGAATTC+TGG + chr1_3:14096203-14096222 Msa0105520:three_prime_UTR 35.0%
GAAAGCTTCAAGCCAAAAAT+TGG - chr1_3:14096321-14096340 None:intergenic 35.0%
AGGATTCAAATTTGGGCTTA+GGG - chr1_3:14094552-14094571 None:intergenic 35.0%
AAGGATTCAAATTTGGGCTT+AGG - chr1_3:14094553-14094572 None:intergenic 35.0%
GGGGTTATATAGTTCTCTAT+TGG - chr1_3:14094578-14094597 None:intergenic 35.0%
TTAGGGTTTGGATGAATTAG+GGG - chr1_3:14094798-14094817 None:intergenic 35.0%
GTTAGGGTTTGGATGAATTA+GGG - chr1_3:14094799-14094818 None:intergenic 35.0%
TGAAAATTAGGGTTAGGGTT+TGG - chr1_3:14094810-14094829 None:intergenic 35.0%
TTGATTAGCATCAATGTGCT+TGG + chr1_3:14095029-14095048 Msa0105520:CDS 35.0%
!! GATTCGATTTGTTGTGAATG+AGG + chr1_3:14095064-14095083 Msa0105520:CDS 35.0%
ACCTTTGTAGTTTGGACTTA+TGG + chr1_3:14095375-14095394 Msa0105520:intron 35.0%
ACCATAAGTCCAAACTACAA+AGG - chr1_3:14095379-14095398 None:intergenic 35.0%
AAATGTTAGTTGAAGTGGTG+AGG + chr1_3:14095460-14095479 Msa0105520:intron 35.0%
AATGTTAGTTGAAGTGGTGA+GGG + chr1_3:14095461-14095480 Msa0105520:intron 35.0%
TGTTATAAGCAAGTAGTCGA+TGG + chr1_3:14095491-14095510 Msa0105520:intron 35.0%
! TTTTCAACAAACAAGAGTCG+GGG - chr1_3:14095523-14095542 None:intergenic 35.0%
TTGAGTCCTTGGGATAAAAT+CGG + chr1_3:14095893-14095912 Msa0105520:CDS 35.0%
TCGATCAAATTGAGATTGTG+GGG + chr1_3:14096076-14096095 Msa0105520:three_prime_UTR 35.0%
GAATTCAAAGTTGTTGTCTC+TGG - chr1_3:14096203-14096222 None:intergenic 35.0%
GAGACAACAACTTTGAATTC+TGG + chr1_3:14096203-14096222 Msa0105520:three_prime_UTR 35.0%
GAAAGCTTCAAGCCAAAAAT+TGG - chr1_3:14096321-14096340 None:intergenic 35.0%
! CGAAGATCTGAGGGAAATTT+TGG - chr1_3:14094638-14094657 None:intergenic 40.0%
TACCATTCACGAAGATCTGA+GGG - chr1_3:14094647-14094666 None:intergenic 40.0%
CATGAAATCGAAGGGGAAAA+GGG - chr1_3:14094674-14094693 None:intergenic 40.0%
GGTTAGGGTTTGGATGAATT+AGG - chr1_3:14094800-14094819 None:intergenic 40.0%
AGAATGCGAATAATGCGAAG+AGG + chr1_3:14095000-14095019 Msa0105520:CDS 40.0%
! TGAAGTCTTATGCACGTGAA+GGG + chr1_3:14095120-14095139 Msa0105520:CDS 40.0%
TTTCTCTATTGCCCTCATCT+TGG + chr1_3:14095179-14095198 Msa0105520:CDS 40.0%
TACCATCAGATCCAAGATGA+GGG - chr1_3:14095193-14095212 None:intergenic 40.0%
ATACCATCAGATCCAAGATG+AGG - chr1_3:14095194-14095213 None:intergenic 40.0%
AATCAAACTAACCCTCTCTC+TGG + chr1_3:14095845-14095864 Msa0105520:intron 40.0%
! TGTGATCCGATTTTATCCCA+AGG - chr1_3:14095902-14095921 None:intergenic 40.0%
TGGGATAAAATCGGATCACA+TGG + chr1_3:14095902-14095921 Msa0105520:CDS 40.0%
!! GGGAAGAAACTTTAAGGTTG+AGG - chr1_3:14096051-14096070 None:intergenic 40.0%
AGAAACAAACACAGCCAAGA+TGG - chr1_3:14096158-14096177 None:intergenic 40.0%
! TCTTGGCTGTGTTTGTTTCT+AGG + chr1_3:14096158-14096177 Msa0105520:three_prime_UTR 40.0%
TATATCTGGATGTTGTGCGT+TGG + chr1_3:14096345-14096364 Msa0105520:three_prime_UTR 40.0%
! CGAAGATCTGAGGGAAATTT+TGG - chr1_3:14094638-14094657 None:intergenic 40.0%
TACCATTCACGAAGATCTGA+GGG - chr1_3:14094647-14094666 None:intergenic 40.0%
CATGAAATCGAAGGGGAAAA+GGG - chr1_3:14094674-14094693 None:intergenic 40.0%
GGTTAGGGTTTGGATGAATT+AGG - chr1_3:14094800-14094819 None:intergenic 40.0%
AGAATGCGAATAATGCGAAG+AGG + chr1_3:14095000-14095019 Msa0105520:CDS 40.0%
! TGAAGTCTTATGCACGTGAA+GGG + chr1_3:14095120-14095139 Msa0105520:CDS 40.0%
TTTCTCTATTGCCCTCATCT+TGG + chr1_3:14095179-14095198 Msa0105520:CDS 40.0%
TACCATCAGATCCAAGATGA+GGG - chr1_3:14095193-14095212 None:intergenic 40.0%
ATACCATCAGATCCAAGATG+AGG - chr1_3:14095194-14095213 None:intergenic 40.0%
AATCAAACTAACCCTCTCTC+TGG + chr1_3:14095845-14095864 Msa0105520:intron 40.0%
! TGTGATCCGATTTTATCCCA+AGG - chr1_3:14095902-14095921 None:intergenic 40.0%
TGGGATAAAATCGGATCACA+TGG + chr1_3:14095902-14095921 Msa0105520:CDS 40.0%
!! GGGAAGAAACTTTAAGGTTG+AGG - chr1_3:14096051-14096070 None:intergenic 40.0%
AGAAACAAACACAGCCAAGA+TGG - chr1_3:14096158-14096177 None:intergenic 40.0%
! TCTTGGCTGTGTTTGTTTCT+AGG + chr1_3:14096158-14096177 Msa0105520:three_prime_UTR 40.0%
TATATCTGGATGTTGTGCGT+TGG + chr1_3:14096345-14096364 Msa0105520:three_prime_UTR 40.0%
TTCCCTCAGATCTTCGTGAA+TGG + chr1_3:14094642-14094661 Msa0105520:five_prime_UTR 45.0%
CTACCATTCACGAAGATCTG+AGG - chr1_3:14094648-14094667 None:intergenic 45.0%
GCATGAAATCGAAGGGGAAA+AGG - chr1_3:14094675-14094694 None:intergenic 45.0%
CTCCCTTTCACCTTCAACAA+CGG + chr1_3:14094696-14094715 Msa0105520:five_prime_UTR 45.0%
GCAAGAAGCGAAAGGGAAAA+GGG - chr1_3:14094740-14094759 None:intergenic 45.0%
TGCAAGAAGCGAAAGGGAAA+AGG - chr1_3:14094741-14094760 None:intergenic 45.0%
CTTGCATGCAAGAAGCGAAA+GGG - chr1_3:14094747-14094766 None:intergenic 45.0%
ATGCGAATAATGCGAAGAGG+AGG + chr1_3:14095003-14095022 Msa0105520:CDS 45.0%
! ATCAATGTGCTTGGAAGTGC+TGG + chr1_3:14095038-14095057 Msa0105520:CDS 45.0%
!! TCAATGTGCTTGGAAGTGCT+GGG + chr1_3:14095039-14095058 Msa0105520:CDS 45.0%
!! GAATGAGGAAGAGCTTGTTG+AGG + chr1_3:14095079-14095098 Msa0105520:CDS 45.0%
! CTGAAGTCTTATGCACGTGA+AGG + chr1_3:14095119-14095138 Msa0105520:CDS 45.0%
TGAAGGGAGATTACCTGTCT+TGG + chr1_3:14095136-14095155 Msa0105520:CDS 45.0%
GAAGGGAGATTACCTGTCTT+GGG + chr1_3:14095137-14095156 Msa0105520:CDS 45.0%
AAGGGAGATTACCTGTCTTG+GGG + chr1_3:14095138-14095157 Msa0105520:CDS 45.0%
CAAACCACAATCCAGAGAGA+GGG - chr1_3:14095859-14095878 None:intergenic 45.0%
TCAAACCACAATCCAGAGAG+AGG - chr1_3:14095860-14095879 None:intergenic 45.0%
CTCTCTGGATTGTGGTTTGA+TGG + chr1_3:14095860-14095879 Msa0105520:intron 45.0%
!! ATTGTGGTTTGATGGTGCAG+CGG + chr1_3:14095868-14095887 Msa0105520:intron 45.0%
AAATCGGATCACATGGAGCT+CGG + chr1_3:14095909-14095928 Msa0105520:CDS 45.0%
GAAGTGGTAGTTGGAAGTCT+TGG + chr1_3:14096020-14096039 Msa0105520:CDS 45.0%
TTCCCTCAGATCTTCGTGAA+TGG + chr1_3:14094642-14094661 Msa0105520:five_prime_UTR 45.0%
CTACCATTCACGAAGATCTG+AGG - chr1_3:14094648-14094667 None:intergenic 45.0%
GCATGAAATCGAAGGGGAAA+AGG - chr1_3:14094675-14094694 None:intergenic 45.0%
CTCCCTTTCACCTTCAACAA+CGG + chr1_3:14094696-14094715 Msa0105520:five_prime_UTR 45.0%
GCAAGAAGCGAAAGGGAAAA+GGG - chr1_3:14094740-14094759 None:intergenic 45.0%
TGCAAGAAGCGAAAGGGAAA+AGG - chr1_3:14094741-14094760 None:intergenic 45.0%
CTTGCATGCAAGAAGCGAAA+GGG - chr1_3:14094747-14094766 None:intergenic 45.0%
ATGCGAATAATGCGAAGAGG+AGG + chr1_3:14095003-14095022 Msa0105520:CDS 45.0%
! ATCAATGTGCTTGGAAGTGC+TGG + chr1_3:14095038-14095057 Msa0105520:CDS 45.0%
!! TCAATGTGCTTGGAAGTGCT+GGG + chr1_3:14095039-14095058 Msa0105520:CDS 45.0%
!! GAATGAGGAAGAGCTTGTTG+AGG + chr1_3:14095079-14095098 Msa0105520:CDS 45.0%
! CTGAAGTCTTATGCACGTGA+AGG + chr1_3:14095119-14095138 Msa0105520:CDS 45.0%
TGAAGGGAGATTACCTGTCT+TGG + chr1_3:14095136-14095155 Msa0105520:CDS 45.0%
GAAGGGAGATTACCTGTCTT+GGG + chr1_3:14095137-14095156 Msa0105520:CDS 45.0%
AAGGGAGATTACCTGTCTTG+GGG + chr1_3:14095138-14095157 Msa0105520:CDS 45.0%
CAAACCACAATCCAGAGAGA+GGG - chr1_3:14095859-14095878 None:intergenic 45.0%
TCAAACCACAATCCAGAGAG+AGG - chr1_3:14095860-14095879 None:intergenic 45.0%
CTCTCTGGATTGTGGTTTGA+TGG + chr1_3:14095860-14095879 Msa0105520:intron 45.0%
!! ATTGTGGTTTGATGGTGCAG+CGG + chr1_3:14095868-14095887 Msa0105520:intron 45.0%
AAATCGGATCACATGGAGCT+CGG + chr1_3:14095909-14095928 Msa0105520:CDS 45.0%
GAAGTGGTAGTTGGAAGTCT+TGG + chr1_3:14096020-14096039 Msa0105520:CDS 45.0%
! AGGGAGCGCATGAAATCGAA+GGG - chr1_3:14094682-14094701 None:intergenic 50.0%
! AAGGGAGCGCATGAAATCGA+AGG - chr1_3:14094683-14094702 None:intergenic 50.0%
CGCCGTTGTTGAAGGTGAAA+GGG - chr1_3:14094701-14094720 None:intergenic 50.0%
TCGCCGTTGTTGAAGGTGAA+AGG - chr1_3:14094702-14094721 None:intergenic 50.0%
GAAGCGAAAGGGAAAAGGGA+AGG - chr1_3:14094736-14094755 None:intergenic 50.0%
CCTTGCATGCAAGAAGCGAA+AGG - chr1_3:14094748-14094767 None:intergenic 50.0%
CCTTTCGCTTCTTGCATGCA+AGG + chr1_3:14094745-14094764 Msa0105520:five_prime_UTR 50.0%
TCGCTTCTTGCATGCAAGGT+TGG + chr1_3:14094749-14094768 Msa0105520:five_prime_UTR 50.0%
CTGTGATCATTCCCCAAGAC+AGG - chr1_3:14095152-14095171 None:intergenic 50.0%
TGCCCTCATCTTGGATCTGA+TGG + chr1_3:14095188-14095207 Msa0105520:CDS 50.0%
CTAACCCTCTCTCTGGATTG+TGG + chr1_3:14095852-14095871 Msa0105520:intron 50.0%
AATGAGGCAGCTGCTGAAGA+TGG + chr1_3:14095968-14095987 Msa0105520:CDS 50.0%
CAGCTGCTGAAGATGGAAGT+GGG + chr1_3:14095975-14095994 Msa0105520:CDS 50.0%
GACTTCATCACTTCCACGCA+GGG + chr1_3:14095997-14096016 Msa0105520:CDS 50.0%
ACTTCATCACTTCCACGCAG+GGG + chr1_3:14095998-14096017 Msa0105520:CDS 50.0%
! AGGGAGCGCATGAAATCGAA+GGG - chr1_3:14094682-14094701 None:intergenic 50.0%
! AAGGGAGCGCATGAAATCGA+AGG - chr1_3:14094683-14094702 None:intergenic 50.0%
CGCCGTTGTTGAAGGTGAAA+GGG - chr1_3:14094701-14094720 None:intergenic 50.0%
TCGCCGTTGTTGAAGGTGAA+AGG - chr1_3:14094702-14094721 None:intergenic 50.0%
GAAGCGAAAGGGAAAAGGGA+AGG - chr1_3:14094736-14094755 None:intergenic 50.0%
CCTTGCATGCAAGAAGCGAA+AGG - chr1_3:14094748-14094767 None:intergenic 50.0%
CCTTTCGCTTCTTGCATGCA+AGG + chr1_3:14094745-14094764 Msa0105520:five_prime_UTR 50.0%
TCGCTTCTTGCATGCAAGGT+TGG + chr1_3:14094749-14094768 Msa0105520:five_prime_UTR 50.0%
CTGTGATCATTCCCCAAGAC+AGG - chr1_3:14095152-14095171 None:intergenic 50.0%
TGCCCTCATCTTGGATCTGA+TGG + chr1_3:14095188-14095207 Msa0105520:CDS 50.0%
CTAACCCTCTCTCTGGATTG+TGG + chr1_3:14095852-14095871 Msa0105520:intron 50.0%
AATGAGGCAGCTGCTGAAGA+TGG + chr1_3:14095968-14095987 Msa0105520:CDS 50.0%
CAGCTGCTGAAGATGGAAGT+GGG + chr1_3:14095975-14095994 Msa0105520:CDS 50.0%
GACTTCATCACTTCCACGCA+GGG + chr1_3:14095997-14096016 Msa0105520:CDS 50.0%
ACTTCATCACTTCCACGCAG+GGG + chr1_3:14095998-14096017 Msa0105520:CDS 50.0%
! GGGAGCGCATGAAATCGAAG+GGG - chr1_3:14094681-14094700 None:intergenic 55.0%
AGAACGCTCGCCGTTGTTGA+AGG - chr1_3:14094709-14094728 None:intergenic 55.0%
GGTTGGCATTATCGCTGCCT+CGG + chr1_3:14094766-14094785 Msa0105520:five_prime_UTR 55.0%
TGAATTAGGGGTCGAGACCG+AGG - chr1_3:14094786-14094805 None:intergenic 55.0%
TGCACATCTTGCGTGCTAGC+AGG + chr1_3:14095559-14095578 Msa0105520:intron 55.0%
!! TGCAGCGGCTTTGAGTCCTT+GGG + chr1_3:14095883-14095902 Msa0105520:intron 55.0%
CGTGCTATGCAAGAAGCCAC+AGG + chr1_3:14095937-14095956 Msa0105520:CDS 55.0%
GCTATGCAAGAAGCCACAGG+CGG + chr1_3:14095940-14095959 Msa0105520:CDS 55.0%
GCAGCTGCTGAAGATGGAAG+TGG + chr1_3:14095974-14095993 Msa0105520:CDS 55.0%
GGACTTCATCACTTCCACGC+AGG + chr1_3:14095996-14096015 Msa0105520:CDS 55.0%
! GGGAGCGCATGAAATCGAAG+GGG - chr1_3:14094681-14094700 None:intergenic 55.0%
AGAACGCTCGCCGTTGTTGA+AGG - chr1_3:14094709-14094728 None:intergenic 55.0%
GGTTGGCATTATCGCTGCCT+CGG + chr1_3:14094766-14094785 Msa0105520:five_prime_UTR 55.0%
TGAATTAGGGGTCGAGACCG+AGG - chr1_3:14094786-14094805 None:intergenic 55.0%
TGCACATCTTGCGTGCTAGC+AGG + chr1_3:14095559-14095578 Msa0105520:intron 55.0%
!! TGCAGCGGCTTTGAGTCCTT+GGG + chr1_3:14095883-14095902 Msa0105520:intron 55.0%
CGTGCTATGCAAGAAGCCAC+AGG + chr1_3:14095937-14095956 Msa0105520:CDS 55.0%
GCTATGCAAGAAGCCACAGG+CGG + chr1_3:14095940-14095959 Msa0105520:CDS 55.0%
GCAGCTGCTGAAGATGGAAG+TGG + chr1_3:14095974-14095993 Msa0105520:CDS 55.0%
GGACTTCATCACTTCCACGC+AGG + chr1_3:14095996-14096015 Msa0105520:CDS 55.0%
!! GTGCAGCGGCTTTGAGTCCT+TGG + chr1_3:14095882-14095901 Msa0105520:intron 60.0%
GCCACAGGCGGCTACAAATG+AGG + chr1_3:14095952-14095971 Msa0105520:CDS 60.0%
GCCTCATTTGTAGCCGCCTG+TGG - chr1_3:14095956-14095975 None:intergenic 60.0%
TCACTTCCACGCAGGGGAAG+TGG + chr1_3:14096004-14096023 Msa0105520:CDS 60.0%
CAACTACCACTTCCCCTGCG+TGG - chr1_3:14096013-14096032 None:intergenic 60.0%
CACGCAGGGGAAGTGGTAGT+TGG + chr1_3:14096011-14096030 Msa0105520:CDS 60.0%
!! GTGCAGCGGCTTTGAGTCCT+TGG + chr1_3:14095882-14095901 Msa0105520:intron 60.0%
GCCACAGGCGGCTACAAATG+AGG + chr1_3:14095952-14095971 Msa0105520:CDS 60.0%
GCCTCATTTGTAGCCGCCTG+TGG - chr1_3:14095956-14095975 None:intergenic 60.0%
TCACTTCCACGCAGGGGAAG+TGG + chr1_3:14096004-14096023 Msa0105520:CDS 60.0%
CAACTACCACTTCCCCTGCG+TGG - chr1_3:14096013-14096032 None:intergenic 60.0%
CACGCAGGGGAAGTGGTAGT+TGG + chr1_3:14096011-14096030 Msa0105520:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 14094546 14096397 14094546 ID=Msa0105520;Name=Msa0105520
chr1_3 mRNA 14094546 14096397 14094546 ID=Msa0105520-mRNA-1;Parent=Msa0105520;Name=Msa0105520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=426|1|1|1|1|1|2|322|141
chr1_3 exon 14094546 14095209 14094546 ID=Msa0105520-mRNA-1:exon:5508;Parent=Msa0105520-mRNA-1
chr1_3 exon 14095888 14096397 14095888 ID=Msa0105520-mRNA-1:exon:5509;Parent=Msa0105520-mRNA-1
chr1_3 five_prime_UTR 14094546 14094971 14094546 ID=Msa0105520-mRNA-1:five_prime_utr;Parent=Msa0105520-mRNA-1
chr1_3 CDS 14094972 14095209 14094972 ID=Msa0105520-mRNA-1:cds;Parent=Msa0105520-mRNA-1
chr1_3 CDS 14095888 14096075 14095888 ID=Msa0105520-mRNA-1:cds;Parent=Msa0105520-mRNA-1
chr1_3 three_prime_UTR 14096076 14096397 14096076 ID=Msa0105520-mRNA-1:three_prime_utr;Parent=Msa0105520-mRNA-1
Gene Sequence

>Msa0105520

ATGTTGTTGAGTAAGCAGAAGAAGAATCAGAATGCGAATAATGCGAAGAGGAGGTTGTTGATTAGCATCAATGTGCTTGGAAGTGCTGGGCCGATTCGATTTGTTGTGAATGAGGAAGAGCTTGTTGAGGCTGTAATTGATACTACGCTGAAGTCTTATGCACGTGAAGGGAGATTACCTGTCTTGGGGAATGATCACAGTGCTTTCTTTCTCTATTGCCCTCATCTTGGATCTGATGCGGCTTTGAGTCCTTGGGATAAAATCGGATCACATGGAGCTCGGAATTTCGTGCTATGCAAGAAGCCACAGGCGGCTACAAATGAGGCAGCTGCTGAAGATGGAAGTGGGACTTCATCACTTCCACGCAGGGGAAGTGGTAGTTGGAAGTCTTGGTTCAACCTCAACCTTAAAGTTTCTTCCCATTAA

Protein sequence

>Msa0105520

MLLSKQKKNQNANNAKRRLLISINVLGSAGPIRFVVNEEELVEAVIDTTLKSYAREGRLPVLGNDHSAFFLYCPHLGSDAALSPWDKIGSHGARNFVLCKKPQAATNEAAAEDGSGTSSLPRRGSGSWKSWFNLNLKVSSH*