AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197610 MtrunA17_Chr2g0291211 93.220 531 9 1 1 531 1 504 0.0 979
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197610 AT2G44200.1 47.253 546 220 15 1 531 1 493 1.97e-118 358
Msa0197610 AT2G44195.1 54.422 147 47 4 1 144 1 130 1.46e-40 144

Find 109 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAATCCGTCGTCAAAA+TGG 0.174154 2_1:-15792753 Msa0197610:exon
TCAAAATTGGACTGACCTTC+TGG 0.234421 2_1:+15787389 None:intergenic
ACCTTCATCTTCTGCTTCTA+AGG 0.253394 2_1:-15792300 Msa0197610:intron
GCATCTGTTGGATCGGATTT+AGG 0.257562 2_1:+15792323 None:intergenic
CACAAGGCTCGATCAGATTC+AGG 0.263337 2_1:-15787680 Msa0197610:CDS
TTCGGAACATTGAAAATGTT+TGG 0.269490 2_1:-15792688 Msa0197610:CDS
CTTGTCAAGGTCTTCATTAA+TGG 0.277281 2_1:+15787709 None:intergenic
TTCTAGTGGGAAGAATTTCT+TGG 0.281360 2_1:-15787126 Msa0197610:CDS
GCTTTGACTCCGGTGGTGAC+TGG 0.293213 2_1:+15787583 None:intergenic
CAGATCTGCCTTGAGAATAA+TGG 0.299472 2_1:+15787027 None:intergenic
TCCCACTAGAACTAGTGTTC+TGG 0.324065 2_1:+15787138 None:intergenic
GCTTTGACTCTGGTGATGAC+TGG 0.326744 2_1:+15787481 None:intergenic
CTGATCATGGCCATCTTGAC+AGG 0.327002 2_1:+15791995 None:intergenic
TAGCAGGATGCAAGTGTTCC+TGG 0.338357 2_1:-15792136 Msa0197610:intron
GATGTCTCTAAAAGGGGAAA+TGG 0.339059 2_1:-15787368 Msa0197610:CDS
CTTGTCAAGGTCTTCATCAC+TGG 0.346059 2_1:+15787877 None:intergenic
CTCAATCTGCTAATGATTCT+TGG 0.352391 2_1:-15792093 Msa0197610:CDS
ACATTGCCGAAAGGAGAAAA+AGG 0.363516 2_1:-15787985 Msa0197610:CDS
CCTTTCAGCAATGTCATCTT+CGG 0.363695 2_1:+15787745 None:intergenic
AGATCTGCCTTGAGAATAAT+GGG 0.400539 2_1:+15787028 None:intergenic
CTTGTCAAGGTCTTCATCAC+TGG 0.406063 2_1:+15787961 None:intergenic
AATGATAATAAGCCAAAGTC+TGG 0.410726 2_1:-15787422 Msa0197610:CDS
CTTTGACTCTGGTGATGACT+GGG 0.413796 2_1:+15787482 None:intergenic
GGAGCATATCTTCCAGACTT+TGG 0.424364 2_1:+15787410 None:intergenic
CATTATTCTCAAGGCAGATC+TGG 0.426795 2_1:-15787026 Msa0197610:CDS
TATGATTCGCCAGCGGGAAC+AGG 0.432439 2_1:-15792044 Msa0197610:CDS
CCTTTCGGTAATGTCGTCTT+CGG 0.433605 2_1:+15787913 None:intergenic
CTTCAATAGCCGAGAGTGTC+CGG 0.442631 2_1:-15787058 Msa0197610:CDS
CTTTGACTCCGGTGGTGACT+GGG 0.443059 2_1:+15787584 None:intergenic
CAAGCGCTTCCTGTTCCCGC+TGG 0.444956 2_1:+15792035 None:intergenic
TAAAACATCTGAAGGTTTCA+AGG 0.450452 2_1:-15792360 Msa0197610:CDS
ACAAAATCCGTCGTCAAAAT+GGG 0.451010 2_1:-15792752 Msa0197610:exon
CTCTCTTCTTCTGAAAGCTT+AGG 0.457506 2_1:+15787263 None:intergenic
CTTGCTTATGATTCGCCAGC+GGG 0.464554 2_1:-15792050 Msa0197610:CDS
GATGGCCATGATCAGAAAAT+CGG 0.465887 2_1:-15791987 Msa0197610:intron
CTTTGACTTTGCTTTGACTC+CGG 0.466375 2_1:+15787573 None:intergenic
TGGTAACAATGTCAGGTTGA+AGG 0.472127 2_1:-15788103 Msa0197610:intron
GAGAATAATGGGTCCGCCGC+CGG 0.472576 2_1:+15787039 None:intergenic
ATGTCTCTAAAAGGGGAAAT+GGG 0.478643 2_1:-15787367 Msa0197610:CDS
CAAGAATCATTAGCAGATTG+AGG 0.486674 2_1:+15792094 None:intergenic
ATGAATCAAGTGAAGGAGAA+AGG 0.487091 2_1:-15787655 Msa0197610:CDS
CCTTGTGACGCTTCTTGTCA+AGG 0.487865 2_1:+15787696 None:intergenic
CCTTGTGACGCTTCTTGTCA+AGG 0.487865 2_1:+15787948 None:intergenic
GGCTGAGGAGACTGATGCAC+AGG 0.492502 2_1:-15787168 Msa0197610:CDS
TGTTCCTGGAGCTTTATTTG+AGG 0.492824 2_1:-15792122 Msa0197610:CDS
TCCGTTGGTAAAACATCTGA+AGG 0.495300 2_1:-15792368 Msa0197610:CDS
CCTTGCGACGCTTCTTGTCA+AGG 0.500562 2_1:+15787780 None:intergenic
CCTTGCGACGCTTCTTGTCA+AGG 0.500908 2_1:+15787864 None:intergenic
GTTGGCACACGGGAAGTCTT+CGG 0.502831 2_1:-15792706 Msa0197610:CDS
TTGATTTGATGGCAGTCACC+AGG 0.505741 2_1:-15792423 Msa0197610:intron
GTGAAGGAGAAAGGAAGAGA+AGG 0.506338 2_1:-15787646 Msa0197610:CDS
TTCTCCTCAAATAAAGCTCC+AGG 0.507556 2_1:+15792118 None:intergenic
TACGATTCGGGATTATCCGT+TGG 0.508802 2_1:-15792383 Msa0197610:CDS
GAAGAAAGATCACAGTAAGA+AGG 0.512623 2_1:-15788068 Msa0197610:CDS
GCAGAAGATCTAGTAGAGCT+TGG 0.513970 2_1:+15787332 None:intergenic
GAAGATGAAGGTGCATCTGT+TGG 0.515053 2_1:+15792311 None:intergenic
TAGCCGAGAGTGTCCGGCGG+CGG 0.519341 2_1:-15787052 Msa0197610:CDS
AAGAGAGGGCTGCTAAACTT+AGG 0.529004 2_1:-15787247 Msa0197610:CDS
AACAAGAAGGGTTGGCACAC+GGG 0.529610 2_1:-15792716 Msa0197610:CDS
AGTATATATGGTGCTGCAGA+AGG 0.535345 2_1:-15787089 Msa0197610:CDS
AGTTACATGAAGGGGAGAGA+TGG 0.541273 2_1:-15787205 Msa0197610:CDS
CTTGCTGCTGAGTTACATGA+AGG 0.544624 2_1:-15787215 Msa0197610:CDS
TGATCATGGCCATCTTGACA+GGG 0.549411 2_1:+15791996 None:intergenic
TGGCAGTCACCAGGAGAGGT+TGG 0.553137 2_1:-15792414 Msa0197610:intron
CAAGGCAGATCTGGAGGTGA+AGG 0.555173 2_1:-15787017 Msa0197610:CDS
ACAAGGCTCGATCAGATTCA+GGG 0.558444 2_1:-15787679 Msa0197610:CDS
GGTCCGCCGCCGGACACTCT+CGG 0.559711 2_1:+15787049 None:intergenic
ATCCAGAACACTAGTTCTAG+TGG 0.561191 2_1:-15787140 Msa0197610:CDS
TATATGGTGCTGCAGAAGGC+GGG 0.561778 2_1:-15787085 Msa0197610:CDS
CGGCGGACCCATTATTCTCA+AGG 0.563050 2_1:-15787035 Msa0197610:CDS
ACAATGTCAGGTTGAAGGAA+AGG 0.564296 2_1:-15788098 Msa0197610:intron
GAACAAGAAGGGTTGGCACA+CGG 0.565028 2_1:-15792717 Msa0197610:CDS
AATCTGCTAATGATTCTTGG+AGG 0.575277 2_1:-15792090 Msa0197610:CDS
CTGAAGATGACATTGCAGAA+AGG 0.576093 2_1:-15787829 Msa0197610:CDS
TGCTGCTGAGTTACATGAAG+GGG 0.576125 2_1:-15787213 Msa0197610:CDS
GAGATGGAAACGTATAAAGA+AGG 0.576882 2_1:-15787189 Msa0197610:CDS
GAGAAGATGCTGATAACAGA+AGG 0.581478 2_1:-15787544 Msa0197610:CDS
CTAAGCTTTCAGAAGAAGAG+AGG 0.584587 2_1:-15787262 Msa0197610:CDS
CCGAAGATGACATTGCTGAA+AGG 0.588334 2_1:-15787745 Msa0197610:CDS
TGAAGGTGCATCTGTTGGAT+CGG 0.591413 2_1:+15792316 None:intergenic
AAAGATCTCCCAGTCACCAC+CGG 0.592015 2_1:-15787592 Msa0197610:CDS
TAAGCTTTCAGAAGAAGAGA+GGG 0.592365 2_1:-15787261 Msa0197610:CDS
AAAGGAACCCGACCCATTTG+GGG 0.593130 2_1:-15792894 None:intergenic
ACCTTAGAAGCAGAAGATGA+AGG 0.594556 2_1:+15792299 None:intergenic
CGCTGGCGAATCATAAGCAA+GGG 0.600210 2_1:+15792052 None:intergenic
ATATATGGTGCTGCAGAAGG+CGG 0.601071 2_1:-15787086 Msa0197610:CDS
TGACTTTGCTTTGACTCCGG+TGG 0.602283 2_1:+15787576 None:intergenic
ACACTATAAGCGGAGAAATG+TGG 0.603511 2_1:-15787288 Msa0197610:CDS
TCAGGGAATGAATCAAGTGA+AGG 0.610707 2_1:-15787662 Msa0197610:CDS
TTGATGGCAGTCACCAGGAG+AGG 0.611802 2_1:-15792418 Msa0197610:intron
GAAACGTATAAAGAAGGCTG+AGG 0.613175 2_1:-15787183 Msa0197610:CDS
GACGTGAATCACACTATAAG+CGG 0.618815 2_1:-15787298 Msa0197610:CDS
CCGCTGGCGAATCATAAGCA+AGG 0.621905 2_1:+15792051 None:intergenic
TATTCTCAAGGCAGATCTGG+AGG 0.626200 2_1:-15787023 Msa0197610:CDS
AGATCTTCTGCTAATTCACT+CGG 0.626705 2_1:-15787320 Msa0197610:CDS
TCCAGAACACTAGTTCTAGT+GGG 0.633784 2_1:-15787139 Msa0197610:CDS
CCTTGACAAGAAGCGTCGCA+AGG 0.636922 2_1:-15787780 Msa0197610:CDS
CCTTGACAAGAAGCGTCGCA+AGG 0.636922 2_1:-15787864 Msa0197610:CDS
TTGCTGCTGAGTTACATGAA+GGG 0.639588 2_1:-15787214 Msa0197610:CDS
CAGATGATGACATTGCCGAA+AGG 0.641716 2_1:-15787994 Msa0197610:CDS
TCTGGAAGATATGCTCCAGA+AGG 0.648751 2_1:-15787404 Msa0197610:CDS
CCTTGACAAGAAGCGTCACA+AGG 0.649341 2_1:-15787696 Msa0197610:CDS
CCTTGACAAGAAGCGTCACA+AGG 0.649341 2_1:-15787948 Msa0197610:CDS
CATCACCAGAGTCAAAGCAA+AGG 0.652067 2_1:-15787476 Msa0197610:CDS
CCTTGCTTATGATTCGCCAG+CGG 0.663978 2_1:-15792051 Msa0197610:CDS
CCGAAGACGACATTACCGAA+AGG 0.688847 2_1:-15787913 Msa0197610:CDS
GGAAGAGTAATTACGGAACG+AGG 0.700559 2_1:+15792555 None:intergenic
AAGGAACCCGACCCATTTGG+GGG 0.706421 2_1:-15792893 None:intergenic
CAATAGCCGAGAGTGTCCGG+CGG 0.732924 2_1:-15787055 Msa0197610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTGATTAATTTTTAT+TGG - chr2_1:15787360-15787379 Msa0197610:CDS 10.0%
!!! TTTTATGAAATTATATTACT+TGG - chr2_1:15788586-15788605 Msa0197610:intron 10.0%
!!! TTTTATTAAATTATGATACA+TGG - chr2_1:15790801-15790820 Msa0197610:intron 10.0%
!! AAAAATCCAAAAGAAAAAAA+AGG + chr2_1:15787920-15787939 None:intergenic 15.0%
!! GTTTATGAAATTATATTAGT+TGG - chr2_1:15788168-15788187 Msa0197610:intron 15.0%
!! ATTTATAACATAATACTATG+AGG - chr2_1:15788539-15788558 Msa0197610:intron 15.0%
!! ACATAAAAATTATAACTTCT+AGG + chr2_1:15790454-15790473 None:intergenic 15.0%
!!! TATGAAATTTTTGAACAAGA+AGG - chr2_1:15787148-15787167 Msa0197610:CDS 20.0%
!!! ATGAAATTTTTGAACAAGAA+GGG - chr2_1:15787149-15787168 Msa0197610:CDS 20.0%
!! TCAAAATTGAGAATTGAATT+GGG + chr2_1:15787349-15787368 None:intergenic 20.0%
!! ATCAAAATTGAGAATTGAAT+TGG + chr2_1:15787350-15787369 None:intergenic 20.0%
!!! AAATCCCAAATTGATTTTTT+AGG - chr2_1:15787385-15787404 Msa0197610:CDS 20.0%
!!! AATCCCAAATTGATTTTTTA+GGG - chr2_1:15787386-15787405 Msa0197610:CDS 20.0%
!! TAACCCTAAAAAATCAATTT+GGG + chr2_1:15787392-15787411 None:intergenic 20.0%
!!! AAATTGATTTTTTAGGGTTA+GGG - chr2_1:15787392-15787411 Msa0197610:CDS 20.0%
!! AAAACAGAAAAACAAATCAT+TGG + chr2_1:15787624-15787643 None:intergenic 20.0%
!!! TGTTGATTGAATTTGAATTT+AGG - chr2_1:15787674-15787693 Msa0197610:CDS 20.0%
!! GTTGATTGAATTTGAATTTA+GGG - chr2_1:15787675-15787694 Msa0197610:CDS 20.0%
!! ATTTATAACACAATACTATG+AGG - chr2_1:15788121-15788140 Msa0197610:intron 20.0%
!!! ATCTTTTTTATATACGAAAC+CGG + chr2_1:15789097-15789116 None:intergenic 20.0%
!!! CTGGTAATATTTATTTTTGA+GGG - chr2_1:15789590-15789609 Msa0197610:intron 20.0%
!! TATATTTATGATTGTGTGTA+TGG - chr2_1:15790545-15790564 Msa0197610:intron 20.0%
!! ATATTTATGATTGTGTGTAT+GGG - chr2_1:15790546-15790565 Msa0197610:intron 20.0%
!! ATTTATAACACAATACTATG+AGG - chr2_1:15788121-15788140 Msa0197610:intron 20.0%
!! GAAAATAAAATTGAATCAGA+AGG + chr2_1:15791249-15791268 None:intergenic 20.0%
!! TTATAAGCAACATAATTTCA+TGG + chr2_1:15791634-15791653 None:intergenic 20.0%
!! TTAAATTGCATTTACTAATC+AGG - chr2_1:15791713-15791732 Msa0197610:intron 20.0%
!!! AAACAACTGTTTCTAATTTA+TGG - chr2_1:15791743-15791762 Msa0197610:intron 20.0%
!!! TTGTTTTGATCGATTGATTT+TGG + chr2_1:15787109-15787128 None:intergenic 25.0%
! AAAATTGAGAATTGAATTGG+GGG + chr2_1:15787347-15787366 None:intergenic 25.0%
! CAAAATTGAGAATTGAATTG+GGG + chr2_1:15787348-15787367 None:intergenic 25.0%
! CTAACCCTAAAAAATCAATT+TGG + chr2_1:15787393-15787412 None:intergenic 25.0%
!!! CAAATTGATTTTTTAGGGTT+AGG - chr2_1:15787391-15787410 Msa0197610:CDS 25.0%
! GTTTATAGTGAATTGAATCA+TGG - chr2_1:15787705-15787724 Msa0197610:CDS 25.0%
!! TCTTTATAGTTGTGCATTTT+TGG - chr2_1:15787952-15787971 Msa0197610:CDS 25.0%
! TAGATAGATACTGTTTAACT+TGG - chr2_1:15788280-15788299 Msa0197610:intron 25.0%
!! AGATAGATACTGTTTAACTT+GGG - chr2_1:15788281-15788300 Msa0197610:intron 25.0%
! AACGTAAAAAAAAAATGAGC+TGG - chr2_1:15789018-15789037 Msa0197610:intron 25.0%
! AAAAAAAAAATGAGCTGGAA+TGG - chr2_1:15789023-15789042 Msa0197610:intron 25.0%
!!! TCTTTTTTATATACGAAACC+GGG + chr2_1:15789096-15789115 None:intergenic 25.0%
! AACTTGAGCTATATATAGTT+CGG - chr2_1:15789310-15789329 Msa0197610:intron 25.0%
! AAATTATAATAGTCCCACAT+CGG - chr2_1:15789449-15789468 Msa0197610:intron 25.0%
! CCTCAAAAATAAATATTACC+AGG + chr2_1:15789592-15789611 None:intergenic 25.0%
!!! CCTGGTAATATTTATTTTTG+AGG - chr2_1:15789589-15789608 Msa0197610:intron 25.0%
! GTACATATTATTCTTCCATA+TGG - chr2_1:15789633-15789652 Msa0197610:intron 25.0%
! AAATTAAATTGAAAGGCCAA+AGG - chr2_1:15789742-15789761 Msa0197610:intron 25.0%
! TTTCAATAAAACTACTCCTT+TGG + chr2_1:15789761-15789780 None:intergenic 25.0%
!! ATTCTGTGATTGTTCTTTTA+TGG - chr2_1:15790266-15790285 Msa0197610:intron 25.0%
!! TTCTGTGATTGTTCTTTTAT+GGG - chr2_1:15790267-15790286 Msa0197610:intron 25.0%
!!! GTAAGCTATGCTATTTTTAA+TGG - chr2_1:15790487-15790506 Msa0197610:intron 25.0%
!! TAGATAAATGCTGTTTAACT+TGG - chr2_1:15790908-15790927 Msa0197610:intron 25.0%
!! AGATAAATGCTGTTTAACTT+GGG - chr2_1:15790909-15790928 Msa0197610:intron 25.0%
!!! ATTCCTTTTTTGATCTTTGT+TGG - chr2_1:15790949-15790968 Msa0197610:intron 25.0%
! AAACCAACAAAGATCAAAAA+AGG + chr2_1:15790955-15790974 None:intergenic 25.0%
!!! TTTTTGATCTTTGTTGGTTT+AGG - chr2_1:15790955-15790974 Msa0197610:intron 25.0%
! AACTTATTCCTACAATGTTA+TGG + chr2_1:15791327-15791346 None:intergenic 25.0%
!! AAATCGAATGACAATGTTTT+GGG + chr2_1:15791414-15791433 None:intergenic 25.0%
!! AAAATCGAATGACAATGTTT+TGG + chr2_1:15791415-15791434 None:intergenic 25.0%
! ATATATTTATAGCAGCAGAA+GGG + chr2_1:15791443-15791462 None:intergenic 25.0%
! AATATATTTATAGCAGCAGA+AGG + chr2_1:15791444-15791463 None:intergenic 25.0%
!!! TGTTTTATGCTTTGATTTAC+TGG + chr2_1:15791853-15791872 None:intergenic 25.0%
!!! CAATTTTGATGTCTCTAAAA+GGG - chr2_1:15792502-15792521 Msa0197610:intron 25.0%
!!! AATTTTGATGTCTCTAAAAG+GGG - chr2_1:15792503-15792522 Msa0197610:intron 25.0%
!! ACTGCTCAAAAAAGTATATA+TGG - chr2_1:15792776-15792795 Msa0197610:five_prime_UTR 25.0%
! AATTTTTGAACAAGAAGGGT+TGG - chr2_1:15787153-15787172 Msa0197610:CDS 30.0%
TTCGGAACATTGAAAATGTT+TGG - chr2_1:15787189-15787208 Msa0197610:CDS 30.0%
!!! TTCATCGAGTTTTTTCTCTT+CGG + chr2_1:15787237-15787256 None:intergenic 30.0%
AAATTGAGAATTGAATTGGG+GGG + chr2_1:15787346-15787365 None:intergenic 30.0%
!! CTGACTTTGATTTGATTTGA+TGG - chr2_1:15787443-15787462 Msa0197610:CDS 30.0%
! GTTGGAGTTTTTATACGATT+CGG - chr2_1:15787481-15787500 Msa0197610:CDS 30.0%
! TTGGAGTTTTTATACGATTC+GGG - chr2_1:15787482-15787501 Msa0197610:CDS 30.0%
TAAAACATCTGAAGGTTTCA+AGG - chr2_1:15787517-15787536 Msa0197610:CDS 30.0%
! ATTGAATCATGGTTTTTGTG+TGG - chr2_1:15787716-15787735 Msa0197610:CDS 30.0%
!!! GGTAAGCCTTTTTTTTCTTT+TGG - chr2_1:15787911-15787930 Msa0197610:CDS 30.0%
!!! TATAGTTGTGCATTTTTGGT+TGG - chr2_1:15787956-15787975 Msa0197610:CDS 30.0%
!!! TTCGTAGTTTAGTTTTGCTT+TGG - chr2_1:15787996-15788015 Msa0197610:CDS 30.0%
!!! TTAGTTTTGCTTTGGTTGAT+TGG - chr2_1:15788004-15788023 Msa0197610:CDS 30.0%
!! TAGTTTTGCTTTGGTTGATT+GGG - chr2_1:15788005-15788024 Msa0197610:CDS 30.0%
AAATGCGAGAAAATTAGAGA+AGG + chr2_1:15788105-15788124 None:intergenic 30.0%
AATGAGATATGAAGAGTTCA+AGG - chr2_1:15788145-15788164 Msa0197610:intron 30.0%
ATGAGATATGAAGAGTTCAA+GGG - chr2_1:15788146-15788165 Msa0197610:intron 30.0%
TATTCCTTTGTTGATCTTGT+TGG - chr2_1:15788320-15788339 Msa0197610:intron 30.0%
TAAACCAACAAGATCAACAA+AGG + chr2_1:15788327-15788346 None:intergenic 30.0%
!! TTTGTTGATCTTGTTGGTTT+AGG - chr2_1:15788326-15788345 Msa0197610:intron 30.0%
GCTTGGTTACTATTGTATTT+CGG - chr2_1:15788394-15788413 Msa0197610:intron 30.0%
! AGCTTTGGTTGATTGAATAT+TGG - chr2_1:15788427-15788446 Msa0197610:intron 30.0%
GCTTTGGTTGATTGAATATT+GGG - chr2_1:15788428-15788447 Msa0197610:intron 30.0%
CTTGTGTAGATATACTGTTT+GGG - chr2_1:15788692-15788711 Msa0197610:intron 30.0%
ATTCCTTTGTTGATCTTTGT+TGG - chr2_1:15788732-15788751 Msa0197610:intron 30.0%
AAACCAACAAAGATCAACAA+AGG + chr2_1:15788738-15788757 None:intergenic 30.0%
!! TTGTTGATCTTTGTTGGTTT+AGG - chr2_1:15788738-15788757 Msa0197610:intron 30.0%
GCTTGGTTACTATTGTATTT+CGG - chr2_1:15788394-15788413 Msa0197610:intron 30.0%
! AGCTTTGGTTGATTGAATAT+TGG - chr2_1:15788427-15788446 Msa0197610:intron 30.0%
GCTTTGGTTGATTGAATATT+GGG - chr2_1:15788428-15788447 Msa0197610:intron 30.0%
!! TTTTCACCATTTTTGTGGTT+GGG - chr2_1:15788976-15788995 Msa0197610:intron 30.0%
CAAGTTTAACCTAGCAAAAA+CGG - chr2_1:15789139-15789158 Msa0197610:intron 30.0%
AATACAGAATGTTGATGCAA+TGG - chr2_1:15789403-15789422 Msa0197610:intron 30.0%
AATTATAATAGTCCCACATC+GGG - chr2_1:15789450-15789469 Msa0197610:intron 30.0%
TAAATATTACCAGGAGAGAA+TGG + chr2_1:15789583-15789602 None:intergenic 30.0%
!!! TATTTATTTTTGAGGGACGT+TGG - chr2_1:15789597-15789616 Msa0197610:intron 30.0%
! GGACGTTGGTATTATTATTT+TGG - chr2_1:15789611-15789630 Msa0197610:intron 30.0%
CATGATAACTCATATCCATA+TGG + chr2_1:15789651-15789670 None:intergenic 30.0%
! TTTAAGATTCACGAACAACT+CGG + chr2_1:15789852-15789871 None:intergenic 30.0%
AAAGGAAATCAAACGAAAAC+AGG + chr2_1:15790074-15790093 None:intergenic 30.0%
AAAATGAATGAAAACTTCGC+CGG + chr2_1:15790112-15790131 None:intergenic 30.0%
!! CAGTATGTTGTTTCTATTGA+AGG - chr2_1:15790219-15790238 Msa0197610:intron 30.0%
!! TATGTTGTTTCTATTGAAGG+AGG - chr2_1:15790222-15790241 Msa0197610:intron 30.0%
AACAGGTAAAAAGATGCTAT+CGG + chr2_1:15790717-15790736 None:intergenic 30.0%
GCGAGAAAATTAAAGAAAAC+AGG + chr2_1:15790734-15790753 None:intergenic 30.0%
ATGAACCAGATTTCTTACTT+TGG - chr2_1:15791030-15791049 Msa0197610:intron 30.0%
TGAACCAGATTTCTTACTTT+GGG - chr2_1:15791031-15791050 Msa0197610:intron 30.0%
TGTAAATTGTTAGAACTTGC+TGG - chr2_1:15791098-15791117 Msa0197610:intron 30.0%
! ATTCCTTAGTTACAAGGTTT+TGG + chr2_1:15791201-15791220 None:intergenic 30.0%
TTGGAAATTCCTTAGTTACA+AGG + chr2_1:15791207-15791226 None:intergenic 30.0%
AAATTGAATCAGAAGGCTTA+TGG + chr2_1:15791242-15791261 None:intergenic 30.0%
!! ATTTTCCATCTTAAGTTGCA+TGG - chr2_1:15791263-15791282 Msa0197610:intron 30.0%
!! TTTTCCATCTTAAGTTGCAT+GGG - chr2_1:15791264-15791283 Msa0197610:intron 30.0%
TTAGCTGATGTTCAATAACA+AGG + chr2_1:15791292-15791311 None:intergenic 30.0%
AAGTTAGACCATAACATTGT+AGG - chr2_1:15791316-15791335 Msa0197610:intron 30.0%
ATTGTAGGAATAAGTTGCAT+GGG - chr2_1:15791331-15791350 Msa0197610:intron 30.0%
TTAGCTGATGTTCAATAACA+AGG + chr2_1:15791292-15791311 None:intergenic 30.0%
AAGTTAGACCATAACATTGT+AGG - chr2_1:15791316-15791335 Msa0197610:intron 30.0%
AATGATAATAAGCCAAAGTC+TGG - chr2_1:15792455-15792474 Msa0197610:intron 30.0%
!! CCTTTTAGAGACATCAAAAT+TGG + chr2_1:15792504-15792523 None:intergenic 30.0%
!! CCAATTTTGATGTCTCTAAA+AGG - chr2_1:15792501-15792520 Msa0197610:intron 30.0%
AAAGAAAAATCGCGCTATTG+CGG + chr2_1:15787021-15787040 None:intergenic 35.0%
AACAAAATCCGTCGTCAAAA+TGG - chr2_1:15787124-15787143 Msa0197610:CDS 35.0%
ACAAAATCCGTCGTCAAAAT+GGG - chr2_1:15787125-15787144 Msa0197610:CDS 35.0%
!! TTTCATACCCATTTTGACGA+CGG + chr2_1:15787135-15787154 None:intergenic 35.0%
! ACCTTCAGATGTTTTACCAA+CGG + chr2_1:15787513-15787532 None:intergenic 35.0%
CAAGAATCATTAGCAGATTG+AGG + chr2_1:15787786-15787805 None:intergenic 35.0%
CTCAATCTGCTAATGATTCT+TGG - chr2_1:15787784-15787803 Msa0197610:CDS 35.0%
AATCTGCTAATGATTCTTGG+AGG - chr2_1:15787787-15787806 Msa0197610:CDS 35.0%
TAAAAACAACCCTGTCAAGA+TGG - chr2_1:15787872-15787891 Msa0197610:CDS 35.0%
TAAAGTCAAACTAGTACGCT+TGG - chr2_1:15788377-15788396 Msa0197610:intron 35.0%
TGCGAGAAAATTAGAGAAAG+CGG + chr2_1:15788520-15788539 None:intergenic 35.0%
CCAAACAGTATATCTACACA+AGG + chr2_1:15788694-15788713 None:intergenic 35.0%
CCTTGTGTAGATATACTGTT+TGG - chr2_1:15788691-15788710 Msa0197610:intron 35.0%
!! GTTTTCACCATTTTTGTGGT+TGG - chr2_1:15788975-15788994 Msa0197610:intron 35.0%
!!! TTTTTTTACGTTCCTGCTTC+AGG + chr2_1:15789010-15789029 None:intergenic 35.0%
! CGTTTTTGCTAGGTTAAACT+TGG + chr2_1:15789141-15789160 None:intergenic 35.0%
GACAATTAACTCGTTGAACT+TGG - chr2_1:15789227-15789246 Msa0197610:intron 35.0%
! TATATATAGTTCGGCTCGTT+TGG - chr2_1:15789319-15789338 Msa0197610:intron 35.0%
ATTATAATAGTCCCACATCG+GGG - chr2_1:15789451-15789470 Msa0197610:intron 35.0%
GGAGTTAGTAAACAATAGAG+AGG - chr2_1:15789472-15789491 Msa0197610:intron 35.0%
GTTAGTAAACAATAGAGAGG+AGG - chr2_1:15789475-15789494 Msa0197610:intron 35.0%
!!! CTTTTTTTTGAGCTCGAGTT+CGG + chr2_1:15789879-15789898 None:intergenic 35.0%
CGACTCGATAAGAATTAACT+CGG + chr2_1:15789931-15789950 None:intergenic 35.0%
ACGAAAACAGGTTTAGATGA+TGG + chr2_1:15790062-15790081 None:intergenic 35.0%
TAAGAGAGGAAAAACGAAAG+AGG + chr2_1:15790159-15790178 None:intergenic 35.0%
TGTGAAAACAGAGTTAAGAG+AGG + chr2_1:15790173-15790192 None:intergenic 35.0%
! TTTTCACACAACCTTTTGCA+TGG - chr2_1:15790185-15790204 Msa0197610:intron 35.0%
TATTGAAGGAGGAACAAGAA+AGG - chr2_1:15790233-15790252 Msa0197610:intron 35.0%
! TGTGATTGTTCTTTTATGGG+AGG - chr2_1:15790270-15790289 Msa0197610:intron 35.0%
AGATGTTCAACCTTGTCAAA+TGG - chr2_1:15790332-15790351 Msa0197610:intron 35.0%
! TATGCAGTTTCTGATTTGAG+TGG - chr2_1:15790377-15790396 Msa0197610:intron 35.0%
CTTACCCAAAGTAAGAAATC+TGG + chr2_1:15791038-15791057 None:intergenic 35.0%
GATTTCTTACTTTGGGTAAG+AGG - chr2_1:15791038-15791057 Msa0197610:intron 35.0%
TTTGGGTAAGAGGAATTACA+GGG - chr2_1:15791048-15791067 Msa0197610:intron 35.0%
!! TACCTTTTGCTCTTATTTGC+CGG - chr2_1:15791127-15791146 Msa0197610:intron 35.0%
!! CTTAGTTACAAGGTTTTGGT+TGG + chr2_1:15791197-15791216 None:intergenic 35.0%
CAACCAAAACCTTGTAACTA+AGG - chr2_1:15791195-15791214 Msa0197610:intron 35.0%
CATTGTAGGAATAAGTTGCA+TGG - chr2_1:15791330-15791349 Msa0197610:intron 35.0%
GGGAAATTCCTACAATGTTA+TGG + chr2_1:15791394-15791413 None:intergenic 35.0%
GTTTACTTCAGCTTCTGTTT+AGG - chr2_1:15791505-15791524 Msa0197610:intron 35.0%
AAATAGCATGACCATTCCTT+AGG + chr2_1:15791569-15791588 None:intergenic 35.0%
AATACTCATGTCTCATGTGT+TGG - chr2_1:15791653-15791672 Msa0197610:intron 35.0%
ATACTCATGTCTCATGTGTT+GGG - chr2_1:15791654-15791673 Msa0197610:intron 35.0%
TCTAATTTATGGCCTGTCTT+TGG - chr2_1:15791754-15791773 Msa0197610:intron 35.0%
GAAGAAAGATCACAGTAAGA+AGG - chr2_1:15791809-15791828 Msa0197610:intron 35.0%
TTGCAGAAAGGAGAAAAAGT+AGG - chr2_1:15792060-15792079 Msa0197610:CDS 35.0%
TTGCTGAAAGGAGAAAAAGA+AGG - chr2_1:15792144-15792163 Msa0197610:intron 35.0%
CTTGTCAAGGTCTTCATTAA+TGG + chr2_1:15792171-15792190 None:intergenic 35.0%
ATGAATCAAGTGAAGGAGAA+AGG - chr2_1:15792222-15792241 Msa0197610:intron 35.0%
! ATGTCTCTAAAAGGGGAAAT+GGG - chr2_1:15792510-15792529 Msa0197610:intron 35.0%
AGATCTTCTGCTAATTCACT+CGG - chr2_1:15792557-15792576 Msa0197610:intron 35.0%
TAAGCTTTCAGAAGAAGAGA+GGG - chr2_1:15792616-15792635 Msa0197610:CDS 35.0%
GAGATGGAAACGTATAAAGA+AGG - chr2_1:15792688-15792707 Msa0197610:CDS 35.0%
TTCTAGTGGGAAGAATTTCT+TGG - chr2_1:15792751-15792770 Msa0197610:exon 35.0%
AGATCTGCCTTGAGAATAAT+GGG + chr2_1:15792852-15792871 None:intergenic 35.0%
CGTCTTCTTCAAGAAAAAGC+TGG - chr2_1:15787299-15787318 Msa0197610:CDS 40.0%
ATTGGGGGGAAGAGTAATTA+CGG + chr2_1:15787332-15787351 None:intergenic 40.0%
ATAAAAACTCCAACCTCTCC+TGG + chr2_1:15787475-15787494 None:intergenic 40.0%
! TCCGTTGGTAAAACATCTGA+AGG - chr2_1:15787509-15787528 Msa0197610:CDS 40.0%
ACCTTCATCTTCTGCTTCTA+AGG - chr2_1:15787577-15787596 Msa0197610:CDS 40.0%
ACCTTAGAAGCAGAAGATGA+AGG + chr2_1:15787581-15787600 None:intergenic 40.0%
! TGGTTTTTGTGTGGTTTAGC+AGG - chr2_1:15787725-15787744 Msa0197610:CDS 40.0%
!! TGTTCCTGGAGCTTTATTTG+AGG - chr2_1:15787755-15787774 Msa0197610:CDS 40.0%
TTCTCCTCAAATAAAGCTCC+AGG + chr2_1:15787762-15787781 None:intergenic 40.0%
GATGGCCATGATCAGAAAAT+CGG - chr2_1:15787890-15787909 Msa0197610:CDS 40.0%
!!! GCTTACCGATTTTCTGATCA+TGG + chr2_1:15787898-15787917 None:intergenic 40.0%
TGCTTTGGTTGATTGGGTAT+TGG - chr2_1:15788011-15788030 Msa0197610:CDS 40.0%
GCTTTGGTTGATTGGGTATT+GGG - chr2_1:15788012-15788031 Msa0197610:CDS 40.0%
!! TATTGGGTTAGCCTTATGCA+TGG - chr2_1:15788028-15788047 Msa0197610:CDS 40.0%
TCGAGAGTTAGAGAATTGCA+AGG - chr2_1:15788214-15788233 Msa0197610:intron 40.0%
! TTCGGTTCGTAGTTTAGCTT+TGG - chr2_1:15788412-15788431 Msa0197610:intron 40.0%
TGCATTCAAGTCCATGCATA+AGG + chr2_1:15788458-15788477 None:intergenic 40.0%
GCGAGAAAATTAGAGAAAGC+GGG + chr2_1:15788519-15788538 None:intergenic 40.0%
TAAAGTCAAACCAGTACGCT+TGG - chr2_1:15788789-15788808 Msa0197610:intron 40.0%
ACAATAGTAACCAAGCGTAC+TGG + chr2_1:15788390-15788409 None:intergenic 40.0%
CTTGTTCAAGACCATGCATA+AGG + chr2_1:15788870-15788889 None:intergenic 40.0%
! CTTATGCATGGTCTTGAACA+AGG - chr2_1:15788868-15788887 Msa0197610:intron 40.0%
! AAGGTAGTCAAAAAGAGTGC+CGG - chr2_1:15788887-15788906 Msa0197610:intron 40.0%
!! GGTCGTTTTCACCATTTTTG+TGG - chr2_1:15788971-15788990 Msa0197610:intron 40.0%
! GAACTTTGTTCGAGTTAGCT+CGG + chr2_1:15789195-15789214 None:intergenic 40.0%
GAGCTAACTCGAACAAAGTT+CGG - chr2_1:15789194-15789213 Msa0197610:intron 40.0%
! GAGGAGGTGTGTCTATATAA+CGG - chr2_1:15789491-15789510 Msa0197610:intron 40.0%
! CTGATAGAGACACAACGTTT+TGG - chr2_1:15789678-15789697 Msa0197610:intron 40.0%
TGATGGAATAGAGTGAACGA+CGG + chr2_1:15790045-15790064 None:intergenic 40.0%
! CTTTTGTTCACTCCCTTTTC+CGG - chr2_1:15790090-15790109 Msa0197610:intron 40.0%
ATGAAAACTTCGCCGGAAAA+GGG + chr2_1:15790105-15790124 None:intergenic 40.0%
AATGAAAACTTCGCCGGAAA+AGG + chr2_1:15790106-15790125 None:intergenic 40.0%
! ATACCGAGTGAAGCATCATT+TGG - chr2_1:15790296-15790315 Msa0197610:intron 40.0%
TCTAGAGGAACCATTTGACA+AGG + chr2_1:15790345-15790364 None:intergenic 40.0%
!! ATAGCTTGCTTCACATCTAG+AGG + chr2_1:15790360-15790379 None:intergenic 40.0%
! GTTTCTGATTTGAGTGGAAC+TGG - chr2_1:15790383-15790402 Msa0197610:intron 40.0%
ATTACAAGTTTGCCCTTGAG+TGG - chr2_1:15790571-15790590 Msa0197610:intron 40.0%
TTACAAGTTTGCCCTTGAGT+GGG - chr2_1:15790572-15790591 Msa0197610:intron 40.0%
AGTTTCTACGTAGGTTCGAT+TGG + chr2_1:15790645-15790664 None:intergenic 40.0%
AAACTCGTTCCTGACTACAT+TGG - chr2_1:15790660-15790679 Msa0197610:intron 40.0%
CATTCAAGACCAATGTAGTC+AGG + chr2_1:15790672-15790691 None:intergenic 40.0%
! GTCAGTTTTTGATCGAGAGT+TGG - chr2_1:15788202-15788221 Msa0197610:intron 40.0%
CTTTGGGTAAGAGGAATTAC+AGG - chr2_1:15791047-15791066 Msa0197610:intron 40.0%
TTGGGTAAGAGGAATTACAG+GGG - chr2_1:15791049-15791068 Msa0197610:intron 40.0%
!! TTGTTAGAACTTGCTGGTGT+AGG - chr2_1:15791104-15791123 Msa0197610:intron 40.0%
!! ACCTTTTGCTCTTATTTGCC+GGG - chr2_1:15791128-15791147 Msa0197610:intron 40.0%
TATTTATAGCAGCAGAAGGG+TGG + chr2_1:15791440-15791459 None:intergenic 40.0%
AACAGAAGCTGAAGTAAACG+AGG + chr2_1:15791504-15791523 None:intergenic 40.0%
CTGACATTGTTACCAAAGAC+AGG + chr2_1:15791769-15791788 None:intergenic 40.0%
! CTGTCTTTGGTAACAATGTC+AGG - chr2_1:15791767-15791786 Msa0197610:intron 40.0%
!! TGGTAACAATGTCAGGTTGA+AGG - chr2_1:15791774-15791793 Msa0197610:intron 40.0%
!! ACAATGTCAGGTTGAAGGAA+AGG - chr2_1:15791779-15791798 Msa0197610:intron 40.0%
ACATTGCCGAAAGGAGAAAA+AGG - chr2_1:15791892-15791911 Msa0197610:intron 40.0%
! ACTGGTCCTTTTTCTCCTTT+CGG + chr2_1:15791901-15791920 None:intergenic 40.0%
CTGAAGATGACATTGCAGAA+AGG - chr2_1:15792048-15792067 Msa0197610:CDS 40.0%
CCTTTCAGCAATGTCATCTT+CGG + chr2_1:15792135-15792154 None:intergenic 40.0%
TCAGGGAATGAATCAAGTGA+AGG - chr2_1:15792215-15792234 Msa0197610:intron 40.0%
! CTTTGACTTTGCTTTGACTC+CGG + chr2_1:15792307-15792326 None:intergenic 40.0%
GAGAAGATGCTGATAACAGA+AGG - chr2_1:15792333-15792352 Msa0197610:CDS 40.0%
! CTTTTCCTTTGCTTTGACTC+TGG + chr2_1:15792409-15792428 None:intergenic 40.0%
TCAAAATTGGACTGACCTTC+TGG + chr2_1:15792491-15792510 None:intergenic 40.0%
! GATGTCTCTAAAAGGGGAAA+TGG - chr2_1:15792509-15792528 Msa0197610:intron 40.0%
GACGTGAATCACACTATAAG+CGG - chr2_1:15792579-15792598 Msa0197610:CDS 40.0%
ACACTATAAGCGGAGAAATG+TGG - chr2_1:15792589-15792608 Msa0197610:CDS 40.0%
! CTCTCTTCTTCTGAAAGCTT+AGG + chr2_1:15792617-15792636 None:intergenic 40.0%
CTAAGCTTTCAGAAGAAGAG+AGG - chr2_1:15792615-15792634 Msa0197610:CDS 40.0%
TTGCTGCTGAGTTACATGAA+GGG - chr2_1:15792663-15792682 Msa0197610:CDS 40.0%
GAAACGTATAAAGAAGGCTG+AGG - chr2_1:15792694-15792713 Msa0197610:CDS 40.0%
!! ATCCAGAACACTAGTTCTAG+TGG - chr2_1:15792737-15792756 Msa0197610:CDS 40.0%
!! TCCAGAACACTAGTTCTAGT+GGG - chr2_1:15792738-15792757 Msa0197610:exon 40.0%
!! AGTATATATGGTGCTGCAGA+AGG - chr2_1:15792788-15792807 Msa0197610:five_prime_UTR 40.0%
CAGATCTGCCTTGAGAATAA+TGG + chr2_1:15792853-15792872 None:intergenic 40.0%
CATTATTCTCAAGGCAGATC+TGG - chr2_1:15792851-15792870 Msa0197610:five_prime_UTR 40.0%
! TTCGGCGCTATGCTTTTGTT+CGG + chr2_1:15787219-15787238 None:intergenic 45.0%
GGAAGAGTAATTACGGAACG+AGG + chr2_1:15787325-15787344 None:intergenic 45.0%
! TTGATTTGATGGCAGTCACC+AGG - chr2_1:15787454-15787473 Msa0197610:CDS 45.0%
! TACGATTCGGGATTATCCGT+TGG - chr2_1:15787494-15787513 Msa0197610:CDS 45.0%
GCATCTGTTGGATCGGATTT+AGG + chr2_1:15787557-15787576 None:intergenic 45.0%
! TGAAGGTGCATCTGTTGGAT+CGG + chr2_1:15787564-15787583 None:intergenic 45.0%
! GAAGATGAAGGTGCATCTGT+TGG + chr2_1:15787569-15787588 None:intergenic 45.0%
TGATCATGGCCATCTTGACA+GGG + chr2_1:15787884-15787903 None:intergenic 45.0%
! CTTATGCATGGTCTTGACTG+CGG - chr2_1:15788040-15788059 Msa0197610:CDS 45.0%
GCGAGAAAATTAGAGAAGGC+AGG + chr2_1:15788101-15788120 None:intergenic 45.0%
! TATTGGGTCAGCCTTATGCA+TGG - chr2_1:15788444-15788463 Msa0197610:intron 45.0%
TCGAGAGTTAGAGAATCGCA+AGG - chr2_1:15788632-15788651 Msa0197610:intron 45.0%
! TTCGGCTCGTAGTTTAGCTT+TGG - chr2_1:15788824-15788843 Msa0197610:intron 45.0%
! TATTGGGTCAGCCTTATGCA+TGG - chr2_1:15788444-15788463 Msa0197610:intron 45.0%
!! AGGTAGTCAAAAAGAGTGCC+GGG - chr2_1:15788888-15788907 Msa0197610:intron 45.0%
CTCGATCCCAACCACAAAAA+TGG + chr2_1:15788985-15789004 None:intergenic 45.0%
ATGAGCTGGAATGGTCCATT+TGG - chr2_1:15789032-15789051 Msa0197610:intron 45.0%
TGAGCTGGAATGGTCCATTT+GGG - chr2_1:15789033-15789052 Msa0197610:intron 45.0%
!! GTTATTTTCTTGACCCGACC+CGG + chr2_1:15789074-15789093 None:intergenic 45.0%
GTCGGGTCAAGAAAATAACC+CGG - chr2_1:15789075-15789094 Msa0197610:intron 45.0%
CAGCTCAAGTTCAGCTCATT+TGG + chr2_1:15789261-15789280 None:intergenic 45.0%
GTTTACTAACTCCCCGATGT+GGG + chr2_1:15789465-15789484 None:intergenic 45.0%
TGTTTACTAACTCCCCGATG+TGG + chr2_1:15789466-15789485 None:intergenic 45.0%
ATCAGAAGCTTACTCCAGTG+AGG + chr2_1:15789527-15789546 None:intergenic 45.0%
TCACTGGAGTAAGCTTCTGA+TGG - chr2_1:15789526-15789545 Msa0197610:intron 45.0%
GAATCGAACTTGTCAGAGCT+CGG + chr2_1:15789956-15789975 None:intergenic 45.0%
!!! GGGTTAGAGAGTTTTGGGTA+GGG + chr2_1:15789997-15790016 None:intergenic 45.0%
!!! AGGGTTAGAGAGTTTTGGGT+AGG + chr2_1:15789998-15790017 None:intergenic 45.0%
! GGACAGGGTTAGAGAGTTTT+GGG + chr2_1:15790002-15790021 None:intergenic 45.0%
GCGAAAAATTCGCCGGAAAA+GGG + chr2_1:15790023-15790042 None:intergenic 45.0%
CGGAAAAGGGAGTGAACAAA+AGG + chr2_1:15790092-15790111 None:intergenic 45.0%
CCATGTTGATGCCATGCAAA+AGG + chr2_1:15790199-15790218 None:intergenic 45.0%
! CCTTTTGCATGGCATCAACA+TGG - chr2_1:15790196-15790215 Msa0197610:intron 45.0%
CAGCCAAATGATGCTTCACT+CGG + chr2_1:15790302-15790321 None:intergenic 45.0%
AAGCATCATTTGGCTGGAAC+TGG - chr2_1:15790306-15790325 Msa0197610:intron 45.0%
TGGAACTGGAACTAGTAGAG+AGG - chr2_1:15790397-15790416 Msa0197610:intron 45.0%
GGAACTGGAACTAGTAGAGA+GGG - chr2_1:15790398-15790417 Msa0197610:intron 45.0%
GGAACTAGTAGAGAGGGAAT+TGG - chr2_1:15790404-15790423 Msa0197610:intron 45.0%
GTTCGTAAGAACCCACTCAA+GGG + chr2_1:15790586-15790605 None:intergenic 45.0%
TCAGGAACGAGTTTCTACGT+AGG + chr2_1:15790654-15790673 None:intergenic 45.0%
!! TCGAGAGTTGGTGAATTGCA+AGG - chr2_1:15790847-15790866 Msa0197610:intron 45.0%
GTTCATACGCACAAGTGTAC+TGG + chr2_1:15791016-15791035 None:intergenic 45.0%
!! CCTTTTGCTCTTATTTGCCG+GGG - chr2_1:15791129-15791148 Msa0197610:intron 45.0%
CACAATGCATATTGCATCCC+CGG + chr2_1:15791149-15791168 None:intergenic 45.0%
CTTATGGCTGCAGAGTGTAT+TGG + chr2_1:15791226-15791245 None:intergenic 45.0%
CTGAAGTAAACGAGGAGGTT+AGG + chr2_1:15791496-15791515 None:intergenic 45.0%
AGAAGCTGAAGTAAACGAGG+AGG + chr2_1:15791501-15791520 None:intergenic 45.0%
!! TAGGAAGCCGTAATGGACAT+GGG + chr2_1:15791550-15791569 None:intergenic 45.0%
!! TTAGGAAGCCGTAATGGACA+TGG + chr2_1:15791551-15791570 None:intergenic 45.0%
ATGTCCATTACGGCTTCCTA+AGG - chr2_1:15791550-15791569 Msa0197610:intron 45.0%
CATTCCTTAGGAAGCCGTAA+TGG + chr2_1:15791557-15791576 None:intergenic 45.0%
CATTACGGCTTCCTAAGGAA+TGG - chr2_1:15791555-15791574 Msa0197610:intron 45.0%
CAGATGATGACATTGCCGAA+AGG - chr2_1:15791883-15791902 Msa0197610:intron 45.0%
CTTGTCAAGGTCTTCATCAC+TGG + chr2_1:15791919-15791938 None:intergenic 45.0%
CCTTTCGGTAATGTCGTCTT+CGG + chr2_1:15791967-15791986 None:intergenic 45.0%
CTTGTCAAGGTCTTCATCAC+TGG + chr2_1:15791919-15791938 None:intergenic 45.0%
CCGAAGATGACATTGCTGAA+AGG - chr2_1:15792132-15792151 Msa0197610:CDS 45.0%
ACAAGGCTCGATCAGATTCA+GGG - chr2_1:15792198-15792217 Msa0197610:intron 45.0%
GTGAAGGAGAAAGGAAGAGA+AGG - chr2_1:15792231-15792250 Msa0197610:intron 45.0%
! CTTTGACTCTGGTGATGACT+GGG + chr2_1:15792398-15792417 None:intergenic 45.0%
CATCACCAGAGTCAAAGCAA+AGG - chr2_1:15792401-15792420 Msa0197610:CDS 45.0%
GGAGCATATCTTCCAGACTT+TGG + chr2_1:15792470-15792489 None:intergenic 45.0%
TCTGGAAGATATGCTCCAGA+AGG - chr2_1:15792473-15792492 Msa0197610:intron 45.0%
GCAGAAGATCTAGTAGAGCT+TGG + chr2_1:15792548-15792567 None:intergenic 45.0%
AAGAGAGGGCTGCTAAACTT+AGG - chr2_1:15792630-15792649 Msa0197610:CDS 45.0%
CTTGCTGCTGAGTTACATGA+AGG - chr2_1:15792662-15792681 Msa0197610:CDS 45.0%
TGCTGCTGAGTTACATGAAG+GGG - chr2_1:15792664-15792683 Msa0197610:CDS 45.0%
AGTTACATGAAGGGGAGAGA+TGG - chr2_1:15792672-15792691 Msa0197610:CDS 45.0%
TCCCACTAGAACTAGTGTTC+TGG + chr2_1:15792742-15792761 None:intergenic 45.0%
!! ATATATGGTGCTGCAGAAGG+CGG - chr2_1:15792791-15792810 Msa0197610:five_prime_UTR 45.0%
TATTCTCAAGGCAGATCTGG+AGG - chr2_1:15792854-15792873 Msa0197610:five_prime_UTR 45.0%
! GAGGTGAAGGCAATGCTTTT+AGG - chr2_1:15792873-15792892 Msa0197610:five_prime_UTR 45.0%
! GTGAAGGCAATGCTTTTAGG+CGG - chr2_1:15792876-15792895 Msa0197610:five_prime_UTR 45.0%
!!! TCAATTTAATTTTTTTTAAA+AGG + chr2_1:15789734-15789753 None:intergenic 5.0%
!! TTAAAAAAAATTAAATTGAA+AGG - chr2_1:15789735-15789754 Msa0197610:intron 5.0%
! GAACAAGAAGGGTTGGCACA+CGG - chr2_1:15787160-15787179 Msa0197610:CDS 50.0%
! AACAAGAAGGGTTGGCACAC+GGG - chr2_1:15787161-15787180 Msa0197610:CDS 50.0%
TAGCAGGATGCAAGTGTTCC+TGG - chr2_1:15787741-15787760 Msa0197610:CDS 50.0%
CGCTGGCGAATCATAAGCAA+GGG + chr2_1:15787828-15787847 None:intergenic 50.0%
CCTTGCTTATGATTCGCCAG+CGG - chr2_1:15787826-15787845 Msa0197610:CDS 50.0%
CTTGCTTATGATTCGCCAGC+GGG - chr2_1:15787827-15787846 Msa0197610:CDS 50.0%
CTGATCATGGCCATCTTGAC+AGG + chr2_1:15787885-15787904 None:intergenic 50.0%
CGCAGTCAAGACCATGCATA+AGG + chr2_1:15788042-15788061 None:intergenic 50.0%
GGTGAAAACGACCCAGATCA+AGG + chr2_1:15788964-15788983 None:intergenic 50.0%
TGGAATGGTCCATTTGGGCT+GGG - chr2_1:15789038-15789057 Msa0197610:intron 50.0%
! TCATTGCCAGCCCTAGTTCT+GGG + chr2_1:15789171-15789190 None:intergenic 50.0%
TTCATTGCCAGCCCTAGTTC+TGG + chr2_1:15789172-15789191 None:intergenic 50.0%
GTGCAACTACCATTCTCTCC+TGG - chr2_1:15789571-15789590 Msa0197610:intron 50.0%
!! TCAGCTCGACTCGGTTCATT+AGG + chr2_1:15789828-15789847 None:intergenic 50.0%
!!! TAGAGAGTTTTGGGTAGGGC+TGG + chr2_1:15789993-15790012 None:intergenic 50.0%
! GGGACAGGGTTAGAGAGTTT+TGG + chr2_1:15790003-15790022 None:intergenic 50.0%
! CTCTAACCCTGTCCCTTTTC+CGG - chr2_1:15790008-15790027 Msa0197610:intron 50.0%
AATTCGCCGGAAAAGGGACA+GGG + chr2_1:15790017-15790036 None:intergenic 50.0%
AAATTCGCCGGAAAAGGGAC+AGG + chr2_1:15790018-15790037 None:intergenic 50.0%
GGCGAAAAATTCGCCGGAAA+AGG + chr2_1:15790024-15790043 None:intergenic 50.0%
AACGACGGCGAAAAATTCGC+CGG + chr2_1:15790030-15790049 None:intergenic 50.0%
! CGAGTGAAGCATCATTTGGC+TGG - chr2_1:15790300-15790319 Msa0197610:intron 50.0%
GGTTCGTAAGAACCCACTCA+AGG + chr2_1:15790587-15790606 None:intergenic 50.0%
TAAGGTCGGGGAACGTAACA+CGG + chr2_1:15790608-15790627 None:intergenic 50.0%
TCTACGTAGGTTCGATTGGC+CGG + chr2_1:15790641-15790660 None:intergenic 50.0%
!! GAGTTGGTGAATTGCAAGGC+AGG - chr2_1:15790851-15790870 Msa0197610:intron 50.0%
CCCCGGCAAATAAGAGCAAA+AGG + chr2_1:15791132-15791151 None:intergenic 50.0%
CGGGGATGCAATATGCATTG+TGG - chr2_1:15791147-15791166 Msa0197610:intron 50.0%
GGCTCCCATGCAACTTAAGA+TGG + chr2_1:15791271-15791290 None:intergenic 50.0%
ATGCAGCCCCATGTCCATTA+CGG - chr2_1:15791540-15791559 Msa0197610:intron 50.0%
!! AGGAAGCCGTAATGGACATG+GGG + chr2_1:15791549-15791568 None:intergenic 50.0%
CCTTGTGACGCTTCTTGTCA+AGG + chr2_1:15791932-15791951 None:intergenic 50.0%
!! CCTTGACAAGAAGCGTCACA+AGG - chr2_1:15791929-15791948 Msa0197610:intron 50.0%
CCGAAGACGACATTACCGAA+AGG - chr2_1:15791964-15791983 Msa0197610:intron 50.0%
CCTTGTGACGCTTCTTGTCA+AGG + chr2_1:15791932-15791951 None:intergenic 50.0%
!! CCTTGACAAGAAGCGTCACA+AGG - chr2_1:15791929-15791948 Msa0197610:intron 50.0%
CACAAGGCTCGATCAGATTC+AGG - chr2_1:15792197-15792216 Msa0197610:intron 50.0%
AAAGATCTCCCAGTCACCAC+CGG - chr2_1:15792285-15792304 Msa0197610:intron 50.0%
TGACTTTGCTTTGACTCCGG+TGG + chr2_1:15792304-15792323 None:intergenic 50.0%
! GCTTTGACTCTGGTGATGAC+TGG + chr2_1:15792399-15792418 None:intergenic 50.0%
!! TATATGGTGCTGCAGAAGGC+GGG - chr2_1:15792792-15792811 Msa0197610:five_prime_UTR 50.0%
!! CTTCAATAGCCGAGAGTGTC+CGG - chr2_1:15792819-15792838 Msa0197610:five_prime_UTR 50.0%
GTTGGCACACGGGAAGTCTT+CGG - chr2_1:15787171-15787190 Msa0197610:CDS 55.0%
! TTGATGGCAGTCACCAGGAG+AGG - chr2_1:15787459-15787478 Msa0197610:CDS 55.0%
CCGCTGGCGAATCATAAGCA+AGG + chr2_1:15787829-15787848 None:intergenic 55.0%
TATGATTCGCCAGCGGGAAC+AGG - chr2_1:15787833-15787852 Msa0197610:CDS 55.0%
!! CAAAAAGAGTGCCGGGTCGT+AGG - chr2_1:15788895-15788914 Msa0197610:intron 55.0%
TGGGATCGAGTTCCTGAAGC+AGG - chr2_1:15788995-15789014 Msa0197610:intron 55.0%
CTGGAATGGTCCATTTGGGC+TGG - chr2_1:15789037-15789056 Msa0197610:intron 55.0%
!!! GGGTATGCGCCGTTTTTGCT+AGG + chr2_1:15789151-15789170 None:intergenic 55.0%
AACGGCGCATACCCAGAACT+AGG - chr2_1:15789157-15789176 Msa0197610:intron 55.0%
ACGGCGCATACCCAGAACTA+GGG - chr2_1:15789158-15789177 Msa0197610:intron 55.0%
CAACTCGGTTCAGCTCGACT+CGG + chr2_1:15789837-15789856 None:intergenic 55.0%
! AGGTTCGATTGGCCGGTGAA+GGG + chr2_1:15790634-15790653 None:intergenic 55.0%
! TAGGTTCGATTGGCCGGTGA+AGG + chr2_1:15790635-15790654 None:intergenic 55.0%
!! GTAATGGACATGGGGCTGCA+TGG + chr2_1:15791541-15791560 None:intergenic 55.0%
CCTTGCGACGCTTCTTGTCA+AGG + chr2_1:15792016-15792035 None:intergenic 55.0%
!! CCTTGACAAGAAGCGTCGCA+AGG - chr2_1:15792013-15792032 Msa0197610:CDS 55.0%
CCTTGCGACGCTTCTTGTCA+AGG + chr2_1:15792016-15792035 None:intergenic 55.0%
!! CCTTGACAAGAAGCGTCGCA+AGG - chr2_1:15792013-15792032 Msa0197610:CDS 55.0%
CTTTGACTCCGGTGGTGACT+GGG + chr2_1:15792296-15792315 None:intergenic 55.0%
CGGCGGACCCATTATTCTCA+AGG - chr2_1:15792842-15792861 Msa0197610:five_prime_UTR 55.0%
CAAGGCAGATCTGGAGGTGA+AGG - chr2_1:15792860-15792879 Msa0197610:five_prime_UTR 55.0%
TGGCAGTCACCAGGAGAGGT+TGG - chr2_1:15787463-15787482 Msa0197610:CDS 60.0%
GGTTGGACGATCCTACGACC+CGG + chr2_1:15788909-15788928 None:intergenic 60.0%
ATCAAGGTCGCAGCACGGTG+GGG + chr2_1:15788948-15788967 None:intergenic 60.0%
GATCAAGGTCGCAGCACGGT+GGG + chr2_1:15788949-15788968 None:intergenic 60.0%
AGATCAAGGTCGCAGCACGG+TGG + chr2_1:15788950-15788969 None:intergenic 60.0%
ACCGTGCTGCGACCTTGATC+TGG - chr2_1:15788949-15788968 Msa0197610:intron 60.0%
CCCAGATCAAGGTCGCAGCA+CGG + chr2_1:15788953-15788972 None:intergenic 60.0%
CCGTGCTGCGACCTTGATCT+GGG - chr2_1:15788950-15788969 Msa0197610:intron 60.0%
TCGCGAAAGCCCAGCCCAAA+TGG + chr2_1:15789050-15789069 None:intergenic 60.0%
CGCATACCCAGAACTAGGGC+TGG - chr2_1:15789162-15789181 Msa0197610:intron 60.0%
! ACGGAAGCGCATCACCTCAC+TGG - chr2_1:15789510-15789529 Msa0197610:intron 60.0%
GGTGAAGGGACGTAAGGTCG+GGG + chr2_1:15790620-15790639 None:intergenic 60.0%
CGGTGAAGGGACGTAAGGTC+GGG + chr2_1:15790621-15790640 None:intergenic 60.0%
CCGGTGAAGGGACGTAAGGT+CGG + chr2_1:15790622-15790641 None:intergenic 60.0%
CCGACCTTACGTCCCTTCAC+CGG - chr2_1:15790619-15790638 Msa0197610:intron 60.0%
TTGGCCGGTGAAGGGACGTA+AGG + chr2_1:15790626-15790645 None:intergenic 60.0%
ATGGGGCTGCATGGCATGGA+TGG + chr2_1:15791532-15791551 None:intergenic 60.0%
GCTTTGACTCCGGTGGTGAC+TGG + chr2_1:15792297-15792316 None:intergenic 60.0%
GGCTGAGGAGACTGATGCAC+AGG - chr2_1:15792709-15792728 Msa0197610:CDS 60.0%
!! CAATAGCCGAGAGTGTCCGG+CGG - chr2_1:15792822-15792841 Msa0197610:five_prime_UTR 60.0%
!! GAGAATAATGGGTCCGCCGC+CGG + chr2_1:15792841-15792860 None:intergenic 60.0%
CAAGCGCTTCCTGTTCCCGC+TGG + chr2_1:15787845-15787864 None:intergenic 65.0%
GAGGCTGTGGCACGTAGGGT+TGG + chr2_1:15788926-15788945 None:intergenic 65.0%
TGGGGAGGCTGTGGCACGTA+GGG + chr2_1:15788930-15788949 None:intergenic 65.0%
! TGGGCTGGGCTTTCGCGAAC+CGG - chr2_1:15789052-15789071 Msa0197610:intron 65.0%
TGGGCTTTCGCGAACCGGGT+CGG - chr2_1:15789057-15789076 Msa0197610:intron 65.0%
GGACATGGGGCTGCATGGCA+TGG + chr2_1:15791536-15791555 None:intergenic 65.0%
GTGGGGAGGCTGTGGCACGT+AGG + chr2_1:15788931-15788950 None:intergenic 70.0%
AAGGTCGCAGCACGGTGGGG+AGG + chr2_1:15788945-15788964 None:intergenic 70.0%
GGGCTGGGCTTTCGCGAACC+GGG - chr2_1:15789053-15789072 Msa0197610:intron 70.0%
GGGCTTTCGCGAACCGGGTC+GGG - chr2_1:15789058-15789077 Msa0197610:intron 70.0%
!! TAGCCGAGAGTGTCCGGCGG+CGG - chr2_1:15792825-15792844 Msa0197610:five_prime_UTR 70.0%
GCAGCACGGTGGGGAGGCTG+TGG + chr2_1:15788939-15788958 None:intergenic 75.0%
GGTCCGCCGCCGGACACTCT+CGG + chr2_1:15792831-15792850 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 15786998 15792901 15786998 ID=Msa0197610;Name=Msa0197610
chr2_1 mRNA 15786998 15792901 15786998 ID=Msa0197610-mRNA-1;Parent=Msa0197610;Name=Msa0197610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=145|1|0.75|1|1|1|4|0|531
chr2_1 exon 15786998 15788110 15786998 ID=Msa0197610-mRNA-1:exon:6624;Parent=Msa0197610-mRNA-1
chr2_1 exon 15791988 15792152 15791988 ID=Msa0197610-mRNA-1:exon:6623;Parent=Msa0197610-mRNA-1
chr2_1 exon 15792301 15792430 15792301 ID=Msa0197610-mRNA-1:exon:6622;Parent=Msa0197610-mRNA-1
chr2_1 exon 15792569 15792901 15792569 ID=Msa0197610-mRNA-1:exon:6621;Parent=Msa0197610-mRNA-1
chr2_1 five_prime_UTR 15792757 15792901 15792757 ID=Msa0197610-mRNA-1:five_prime_utr;Parent=Msa0197610-mRNA-1
chr2_1 CDS 15792569 15792756 15792569 ID=Msa0197610-mRNA-1:cds;Parent=Msa0197610-mRNA-1
chr2_1 CDS 15792301 15792430 15792301 ID=Msa0197610-mRNA-1:cds;Parent=Msa0197610-mRNA-1
chr2_1 CDS 15791988 15792152 15791988 ID=Msa0197610-mRNA-1:cds;Parent=Msa0197610-mRNA-1
chr2_1 CDS 15786998 15788110 15786998 ID=Msa0197610-mRNA-1:cds;Parent=Msa0197610-mRNA-1
Gene Sequence

>Msa0197610

ATGGGTATGAAATTTTTGAACAAGAAGGGTTGGCACACGGGAAGTCTTCGGAACATTGAAAATGTTTGGAAAGCCGAACAAAAGCATAGCGCCGAAGAGAAAAAACTCGATGAACTTCGTAAGCAGATTCAAGAAGAACGTGAACGTAGCGAATTTCGTCTTCTTCAAGAAAAAGCTGGCCTCGTTCCTCACCAGGAGAGGTTGGAGTTTTTATACGATTCGGGATTATCCGTTGGTAAAACATCTGAAGGTTTCAAGGCACTTGAAGCTTTGCCTAAATCCGATCCAACAGATGCACCTTCATCTTCTGCTTCTAAGGATGCAAGTGTTCCTGGAGCTTTATTTGAGGAGAAGCCTCAATCTGCTAATGATTCTTGGAGGAAACTTCATTCTGATCCCTTGCTTATGATTCGCCAGCGGGAACAGGAAGCGCTTGCGAAGATTAAAAACAACCCTGTCAAGATGGCCATGATCAGAAAATCGGTTGAAGGAAAGGAACACAAGAAGAAAGATCACAGTAAGAAGGAAAAAAAGAAGCATCGATCCAGTAAATCAAAGCATAAAACACAGTCTGATTCAGATGATGACATTGCCGAAAGGAGAAAAAGGACCAGTGATGAAGACCTTGACAAGAAGCGTCACAAGGCTCAATCAGATTCCGAAGACGACATTACCGAAAGGAGAAAAAGAAGAACCAGTGATGAAGACCTTGACAAGAAGCGTCGCAAGGCTCGATCAGATTCTGAAGATGACATTGCAGAAAGGAGAAAAAGTAGGATCAGTGATGAAGACCTTGACAAGAAGCGTCGCAAGGCTCAATCAGATTCCGAAGATGACATTGCTGAAAGGAGAAAAAGAAGGACCATTAATGAAGACCTTGACAAGAAGCGTCACAAGGCTCGATCAGATTCAGGGAATGAATCAAGTGAAGGAGAAAGGAAGAGAAGGAAGAATCACTATGAAGACAGAAAATACAAAGAAAGATCTCCCAGTCACCACCGGAGTCAAAGCAAAGTCAAAGACTATAGAGAAGATGCTGATAACAGAAGGAAGAATCAATATGAAGACAAAAAATACAGAGAAAGATCACCCAGTCATCACCAGAGTCAAAGCAAAGGAAAAGACTATAAAGAAGATGTTGATGACAGAAATGATAATAAGCCAAAGTCTGGAAGATATGCTCCAGAAGGTCAGTCCAATTTTGATGTCTCTAAAAGGGGAAATGGGAGCTTTCGAGAACCAAGCTCTACTAGATCTTCTGCTAATTCACTCGGACGTGAATCACACTATAAGCGGAGAAATGTGGCTCCTAAGCTTTCAGAAGAAGAGAGGGCTGCTAAACTTAGGCAGATGCAACTTGCTGCTGAGTTACATGAAGGGGAGAGATGGAAACGTATAAAGAAGGCTGAGGAGACTGATGCACAGGAAGCAATCCAGAACACTAGTTCTAGTGGGAAGAATTTCTTGGATACTGCTCAAAAAAGTATATATGGTGCTGCAGAAGGCGGGAGCTCTTCAATAGCCGAGAGTGTCCGGCGGCGGACCCATTATTCTCAAGGCAGATCTGGAGGTGAAGGCAATGCTTTTAGGCGGTAA

Protein sequence

>Msa0197610

MGMKFLNKKGWHTGSLRNIENVWKAEQKHSAEEKKLDELRKQIQEERERSEFRLLQEKAGLVPHQERLEFLYDSGLSVGKTSEGFKALEALPKSDPTDAPSSSASKDASVPGALFEEKPQSANDSWRKLHSDPLLMIRQREQEALAKIKNNPVKMAMIRKSVEGKEHKKKDHSKKEKKKHRSSKSKHKTQSDSDDDIAERRKRTSDEDLDKKRHKAQSDSEDDITERRKRRTSDEDLDKKRRKARSDSEDDIAERRKSRISDEDLDKKRRKAQSDSEDDIAERRKRRTINEDLDKKRHKARSDSGNESSEGERKRRKNHYEDRKYKERSPSHHRSQSKVKDYREDADNRRKNQYEDKKYRERSPSHHQSQSKGKDYKEDVDDRNDNKPKSGRYAPEGQSNFDVSKRGNGSFREPSSTRSSANSLGRESHYKRRNVAPKLSEEERAAKLRQMQLAAELHEGERWKRIKKAEETDAQEAIQNTSSSGKNFLDTAQKSIYGAAEGGSSSIAESVRRRTHYSQGRSGGEGNAFRR*