Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700920 | XP_003629722.2 | 89.521 | 334 | 31 | 1 | 1 | 330 | 1 | 334 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700920 | sp|Q9Y3A4|RRP7A_HUMAN | 31.788 | 151 | 87 | 4 | 186 | 330 | 140 | 280 | 1.31e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700920 | G7LIM3 | 89.521 | 334 | 31 | 1 | 1 | 330 | 1 | 334 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045490 | Msa0700920 | 0.824331 | 8.551873e-54 | -8.615850e-47 |
| Msa0047160 | Msa0700920 | 0.824541 | 7.632299e-54 | -8.615850e-47 |
| Msa0094470 | Msa0700920 | 0.812506 | 4.097049e-51 | -8.615850e-47 |
| Msa0603320 | Msa0700920 | 0.804737 | 1.871213e-49 | -8.615850e-47 |
| Msa0615440 | Msa0700920 | 0.810842 | 9.425841e-51 | -8.615850e-47 |
| Msa0618950 | Msa0700920 | 0.800121 | 1.672103e-48 | -8.615850e-47 |
| Msa0641140 | Msa0700920 | 0.816032 | 6.815231e-52 | -8.615850e-47 |
| Msa0656580 | Msa0700920 | 0.828882 | 7.023450e-55 | -8.615850e-47 |
| Msa0698490 | Msa0700920 | 0.809170 | 2.160279e-50 | -8.615850e-47 |
| Msa0698660 | Msa0700920 | 0.809952 | 1.467311e-50 | -8.615850e-47 |
| Msa0700860 | Msa0700920 | 0.993028 | 5.573477e-197 | -8.615850e-47 |
| Msa0700920 | Msa0796440 | 0.805465 | 1.317667e-49 | -8.615850e-47 |
| Msa0700920 | Msa0802410 | 0.810503 | 1.115888e-50 | -8.615850e-47 |
| Msa0700920 | Msa0819060 | 0.805512 | 1.288310e-49 | -8.615850e-47 |
| Msa0700920 | Msa0830390 | 0.822650 | 2.114328e-53 | -8.615850e-47 |
| Msa0700920 | Msa0850710 | 0.816060 | 6.717910e-52 | -8.615850e-47 |
| Msa0700920 | Msa0859180 | 0.833229 | 6.012224e-56 | -8.615850e-47 |
| Msa0700920 | Msa0879850 | 0.802372 | 5.787878e-49 | -8.615850e-47 |
| Msa0700920 | Msa0902760 | 0.811070 | 8.415489e-51 | -8.615850e-47 |
| Msa0700920 | Msa0944660 | 0.812051 | 5.150382e-51 | -8.615850e-47 |
| Msa0700920 | Msa0970530 | 0.808425 | 3.117435e-50 | -8.615850e-47 |
| Msa0700920 | Msa1004890 | 0.804049 | 2.603526e-49 | -8.615850e-47 |
| Msa0700920 | Msa1006840 | 0.823373 | 1.434084e-53 | -8.615850e-47 |
| Msa0700920 | Msa1013400 | 0.802998 | 4.300152e-49 | -8.615850e-47 |
| Msa0700920 | Msa1025260 | 0.809467 | 1.865352e-50 | -8.615850e-47 |
| Msa0700920 | Msa1077030 | 0.802270 | 6.075807e-49 | -8.615850e-47 |
| Msa0700920 | Msa1093330 | 0.801145 | 1.033799e-48 | -8.615850e-47 |
| Msa0700920 | Msa1093530 | 0.807990 | 3.858127e-50 | -8.615850e-47 |
| Msa0700920 | Msa1109350 | 0.807547 | 4.792934e-50 | -8.615850e-47 |
| Msa0700920 | Msa1133400 | 0.821248 | 4.466260e-53 | -8.615850e-47 |
| Msa0700920 | Msa1145240 | 0.800965 | 1.124939e-48 | -8.615850e-47 |
| Msa0700920 | Msa1207270 | 0.807872 | 4.087846e-50 | -8.615850e-47 |
| Msa0700920 | Msa1218600 | 0.817918 | 2.570017e-52 | -8.615850e-47 |
| Msa0700920 | Msa1265630 | 0.824056 | 9.922375e-54 | -8.615850e-47 |
| Msa0700920 | Msa1355700 | 0.821682 | 3.545893e-53 | -8.615850e-47 |
| Msa0700920 | Msa1369890 | 0.804811 | 1.806100e-49 | -8.615850e-47 |
| Msa0700920 | Msa1376200 | 0.829677 | 4.501954e-55 | -8.615850e-47 |
| Msa0700920 | Msa1381480 | 0.804546 | 2.050920e-49 | -8.615850e-47 |
| Msa0700920 | Msa1393430 | 0.809050 | 2.291606e-50 | -8.615850e-47 |
| Msa0700920 | Msa1394290 | 0.814667 | 1.371195e-51 | -8.615850e-47 |
| Msa0700920 | Msa1407970 | 0.800550 | 1.367172e-48 | -8.615850e-47 |
| Msa0700920 | Msa1432700 | 0.804130 | 2.504338e-49 | -8.615850e-47 |
| Msa0700920 | Msa1457920 | 0.810301 | 1.233700e-50 | -8.615850e-47 |
| Msa0127310 | Msa0700920 | 0.801913 | 7.193655e-49 | -8.615850e-47 |
| Msa0127850 | Msa0700920 | 0.804544 | 2.052782e-49 | -8.615850e-47 |
| Msa0133630 | Msa0700920 | 0.804527 | 2.069612e-49 | -8.615850e-47 |
| Msa0146770 | Msa0700920 | 0.816271 | 6.026128e-52 | -8.615850e-47 |
| Msa0177210 | Msa0700920 | 0.809372 | 1.955092e-50 | -8.615850e-47 |
| Msa0189300 | Msa0700920 | 0.816181 | 6.312962e-52 | -8.615850e-47 |
| Msa0227400 | Msa0700920 | 0.804924 | 1.710473e-49 | -8.615850e-47 |
| Msa0231660 | Msa0700920 | 0.812009 | 5.258794e-51 | -8.615850e-47 |
| Msa0231880 | Msa0700920 | 0.806910 | 6.540545e-50 | -8.615850e-47 |
| Msa0467780 | Msa0700920 | 0.812340 | 4.452855e-51 | -8.615850e-47 |
| Msa0484840 | Msa0700920 | 0.819197 | 1.317931e-52 | -8.615850e-47 |
| Msa0514180 | Msa0700920 | 0.809668 | 1.688407e-50 | -8.615850e-47 |
| Msa0524590 | Msa0700920 | 0.805114 | 1.560561e-49 | -8.615850e-47 |
| Msa0550540 | Msa0700920 | 0.803224 | 3.861196e-49 | -8.615850e-47 |
| Msa0554290 | Msa0700920 | 0.813207 | 2.876203e-51 | -8.615850e-47 |
| Msa0556790 | Msa0700920 | 0.802984 | 4.327323e-49 | -8.615850e-47 |
| Msa0558810 | Msa0700920 | 0.861970 | 7.056424e-64 | -8.615850e-47 |
| Msa0558840 | Msa0700920 | 0.830298 | 3.176892e-55 | -8.615850e-47 |
| Msa0600600 | Msa0700920 | 0.826984 | 2.009226e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700920 | MtrunA17_Chr8g0378681 | 89.521 | 334 | 31 | 1 | 1 | 330 | 1 | 334 | 0.0 | 596 |
| Msa0700920 | MtrunA17_Chr4g0025631 | 74.670 | 379 | 45 | 4 | 1 | 330 | 1 | 377 | 0.0 | 529 |
| Msa0700920 | MtrunA17_Chr1g0197131 | 81.955 | 133 | 24 | 0 | 198 | 330 | 1 | 133 | 8.71e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700920 | AT5G38720.3 | 65.101 | 149 | 51 | 1 | 183 | 330 | 165 | 313 | 8.62e-69 | 218 |
| Msa0700920 | AT5G38720.1 | 65.101 | 149 | 51 | 1 | 183 | 330 | 158 | 306 | 9.89e-69 | 217 |
| Msa0700920 | AT5G38720.2 | 65.101 | 149 | 51 | 1 | 183 | 330 | 177 | 325 | 5.09e-68 | 216 |
Find 67 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTATAATCTCCATTTC+AGG | 0.169996 | 4_4:+72095389 | None:intergenic |
| ATCAGAATCTCTACGCTTCT+TGG | 0.250763 | 4_4:+72095119 | None:intergenic |
| AAATCAACTTCTTCATCTTC+TGG | 0.256960 | 4_4:+72095296 | None:intergenic |
| AAAGTTAGTAAAGGAGAAAA+AGG | 0.308720 | 4_4:-72095834 | Msa0700920:CDS |
| AGCTGCTGCAGAAAATAAAT+TGG | 0.319112 | 4_4:-72092489 | Msa0700920:CDS |
| GCAATCAACATCATTTAATA+AGG | 0.321323 | 4_4:+72091733 | None:intergenic |
| GTTGATTTAGAAGAGCAAAA+TGG | 0.351385 | 4_4:-72095281 | Msa0700920:intron |
| TCCTGAAATGGAGATTATAA+AGG | 0.363253 | 4_4:-72095390 | Msa0700920:CDS |
| GACATTCATATTATTTCCTC+TGG | 0.367904 | 4_4:-72094891 | Msa0700920:CDS |
| GCGTTCCTTATGCCCATCAT+TGG | 0.384093 | 4_4:-72091537 | Msa0700920:three_prime_UTR |
| CCAACCCTGGTCTACTTTGA+TGG | 0.384521 | 4_4:+72094398 | None:intergenic |
| AAGCCACCACTAATCGAAAA+AGG | 0.413000 | 4_4:-72095355 | Msa0700920:CDS |
| AAGAAAAGAACCTGCGACCT+TGG | 0.413836 | 4_4:+72091708 | None:intergenic |
| TCCACCTGCGTTTAGCGGCC+AGG | 0.422775 | 4_4:+72096120 | None:intergenic |
| GGAGATGATGACTGCTCAAA+TGG | 0.443319 | 4_4:-72094870 | Msa0700920:CDS |
| AAAAGAGAAGCTCAGAGAAA+TGG | 0.446445 | 4_4:-72092419 | Msa0700920:intron |
| AAAGAGAGAACAAAATCATC+AGG | 0.460936 | 4_4:-72094916 | Msa0700920:CDS |
| TCCTTTACTAACTTTCATCA+TGG | 0.465522 | 4_4:+72095842 | None:intergenic |
| CCTGAAATGGAGATTATAAA+GGG | 0.465886 | 4_4:-72095389 | Msa0700920:CDS |
| TGTTTCAGTGGATCCTGAAA+TGG | 0.466212 | 4_4:-72095402 | Msa0700920:intron |
| TCCATCCTCCTTCTGCAGCA+AGG | 0.468377 | 4_4:+72092588 | None:intergenic |
| AGGTTAACGCAATCCAATGA+TGG | 0.468471 | 4_4:+72091524 | None:intergenic |
| CATGTCAAGATGAACAATAA+TGG | 0.472762 | 4_4:-72095747 | Msa0700920:intron |
| AAGTGGGATTGCTGTGGGCT+CGG | 0.474663 | 4_4:-72092519 | Msa0700920:CDS |
| GAGTTTCCACCTGCGTTTAG+CGG | 0.483197 | 4_4:+72096115 | None:intergenic |
| GTAAATGAACAAAATTTGTC+AGG | 0.484474 | 4_4:+72091635 | None:intergenic |
| GCAATCCAATGATGGGCATA+AGG | 0.492331 | 4_4:+72091532 | None:intergenic |
| CCATCCTCCTTCTGCAGCAA+GGG | 0.496362 | 4_4:+72092589 | None:intergenic |
| TTGATTGCAGCCAAGGTCGC+AGG | 0.505768 | 4_4:-72091718 | Msa0700920:three_prime_UTR |
| CGCTGAAAGTGGGATTGCTG+TGG | 0.507910 | 4_4:-72092525 | Msa0700920:CDS |
| CTCAGATACCTTGAGAAATG+AGG | 0.517485 | 4_4:+72096070 | None:intergenic |
| GCCATGATGAAAGTTAGTAA+AGG | 0.525855 | 4_4:-72095843 | Msa0700920:CDS |
| AAAACTACTGACGCTGAAAG+TGG | 0.530432 | 4_4:-72092536 | Msa0700920:CDS |
| AATGATGTTGATTGCAGCCA+AGG | 0.532209 | 4_4:-72091725 | Msa0700920:three_prime_UTR |
| CCATCAAAGTAGACCAGGGT+TGG | 0.532437 | 4_4:-72094398 | Msa0700920:CDS |
| TGTTGCAAAACCTCCAACCC+TGG | 0.543861 | 4_4:+72094385 | None:intergenic |
| TTTCGCTCCCTCATTTCTCA+AGG | 0.544907 | 4_4:-72096078 | Msa0700920:intron |
| CCCTTGCTGCAGAAGGAGGA+TGG | 0.545811 | 4_4:-72092589 | Msa0700920:CDS |
| GGAACTGCAGAGCAAATTTG+AGG | 0.547063 | 4_4:-72091803 | Msa0700920:CDS |
| TCAAACCACAGAGTGGATCA+TGG | 0.547910 | 4_4:-72094425 | Msa0700920:intron |
| TCAAAGTAGACCAGGGTTGG+AGG | 0.548210 | 4_4:-72094395 | Msa0700920:CDS |
| AAAGAAGCCCTTGCTGCAGA+AGG | 0.553866 | 4_4:-72092596 | Msa0700920:CDS |
| GTTGATTTAGAAGTGCAAAA+CGG | 0.556656 | 4_4:-72095550 | Msa0700920:intron |
| TGCTGCAGAAGGAGGATGGA+CGG | 0.572937 | 4_4:-72092585 | Msa0700920:CDS |
| GAAGCCCTTGCTGCAGAAGG+AGG | 0.575071 | 4_4:-72092593 | Msa0700920:CDS |
| TGCGTTAACCTATGTTATTG+TGG | 0.579699 | 4_4:-72091512 | Msa0700920:three_prime_UTR |
| AAACTACTGACGCTGAAAGT+GGG | 0.579773 | 4_4:-72092535 | Msa0700920:CDS |
| GGTTAACGCAATCCAATGAT+GGG | 0.580909 | 4_4:+72091525 | None:intergenic |
| GCTGAAAGTGGGATTGCTGT+GGG | 0.581833 | 4_4:-72092524 | Msa0700920:CDS |
| GAATACCATCAAAGTAGACC+AGG | 0.581962 | 4_4:-72094403 | Msa0700920:CDS |
| TGATACATCCACAATAACAT+AGG | 0.582790 | 4_4:+72091504 | None:intergenic |
| TTGTGATTCTAAAGAAGAGA+AGG | 0.583202 | 4_4:-72095151 | Msa0700920:CDS |
| TCAGATACCTTGAGAAATGA+GGG | 0.584663 | 4_4:+72096071 | None:intergenic |
| ACCTGGCCGCTAAACGCAGG+TGG | 0.586936 | 4_4:-72096121 | Msa0700920:five_prime_UTR |
| CCATATATCAGATGGAGTAG+TGG | 0.593466 | 4_4:-72095178 | Msa0700920:intron |
| TCTAAAGAAGAGAAGGTCAA+AGG | 0.593515 | 4_4:-72095144 | Msa0700920:CDS |
| AGAACCTGGCCGCTAAACGC+AGG | 0.596545 | 4_4:-72096124 | Msa0700920:five_prime_UTR |
| GACGGTGGTTCAGCACCACA+AGG | 0.611340 | 4_4:-72092567 | Msa0700920:CDS |
| TGGTTCAGCACCACAAGGGT+AGG | 0.619462 | 4_4:-72092562 | Msa0700920:CDS |
| TAGAGATTCTGATATTGAAG+CGG | 0.633558 | 4_4:-72095109 | Msa0700920:CDS |
| TGCAACAGTTGAGAGCTGCT+AGG | 0.650823 | 4_4:-72091765 | Msa0700920:CDS |
| TGAGCAGTCATCATCTCCAG+AGG | 0.681253 | 4_4:+72094875 | None:intergenic |
| ACTGCAGAGCAAATTTGAGG+AGG | 0.684181 | 4_4:-72091800 | Msa0700920:CDS |
| AGAGTTTATATCTACTTACG+AGG | 0.689415 | 4_4:-72094353 | Msa0700920:CDS |
| TGCAGAAGGAGGATGGACGG+TGG | 0.709610 | 4_4:-72092582 | Msa0700920:CDS |
| AATACCATCAAAGTAGACCA+GGG | 0.721380 | 4_4:-72094402 | Msa0700920:CDS |
| ACGGTGGTTCAGCACCACAA+GGG | 0.735362 | 4_4:-72092566 | Msa0700920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTATTGTTATACA+TGG | - | chr4_4:72093043-72093062 | Msa0700920:intron | 10.0% |
| !! | TCAATTTATAATAAAATTCA+TGG | + | chr4_4:72093380-72093399 | None:intergenic | 10.0% |
| !!! | TTTTAGTTTAAGAAATATTA+GGG | - | chr4_4:72095385-72095404 | Msa0700920:CDS | 10.0% |
| !!! | AATGATTTTTTTTGTAATGT+CGG | - | chr4_4:72092786-72092805 | Msa0700920:intron | 15.0% |
| !! | TTAAATATACAATAGCATAT+GGG | + | chr4_4:72093027-72093046 | None:intergenic | 15.0% |
| !! | ATTAAATATACAATAGCATA+TGG | + | chr4_4:72093028-72093047 | None:intergenic | 15.0% |
| !!! | TAAAGGAAATTAATTTTGAA+AGG | + | chr4_4:72094591-72094610 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTAAGAAATATT+AGG | - | chr4_4:72095384-72095403 | Msa0700920:CDS | 15.0% |
| !!! | ACAAATATTTTTGACAAAAT+TGG | + | chr4_4:72095948-72095967 | None:intergenic | 15.0% |
| !!! | GATTTTTTCATTATATTCTT+TGG | - | chr4_4:72096119-72096138 | Msa0700920:five_prime_UTR | 15.0% |
| !! | TTAAGCAAATATACATGTTA+TGG | + | chr4_4:72091524-72091543 | None:intergenic | 20.0% |
| !! | ATAGTTTACCCTAAATTATA+AGG | - | chr4_4:72091547-72091566 | Msa0700920:three_prime_UTR | 20.0% |
| !!! | TAGTTAAATTGCAAATTTTG+AGG | - | chr4_4:72091592-72091611 | Msa0700920:three_prime_UTR | 20.0% |
| !!! | AGTTAAATTGCAAATTTTGA+GGG | - | chr4_4:72091593-72091612 | Msa0700920:three_prime_UTR | 20.0% |
| !!! | AAATGTGTTATGTTTTTGTA+CGG | - | chr4_4:72092091-72092110 | Msa0700920:intron | 20.0% |
| !! | TTTGCTTAAGTAGAAATATT+TGG | + | chr4_4:72093306-72093325 | None:intergenic | 20.0% |
| !!! | TTGTATAATTACTAGTTCTA+TGG | - | chr4_4:72093441-72093460 | Msa0700920:intron | 20.0% |
| !!! | CTTTTACATGTTATTTTTCA+AGG | + | chr4_4:72093467-72093486 | None:intergenic | 20.0% |
| !!! | AAAAGTTATTTTCCTTCATA+AGG | - | chr4_4:72093482-72093501 | Msa0700920:intron | 20.0% |
| !!! | AAAGTTATTTTCCTTCATAA+GGG | - | chr4_4:72093483-72093502 | Msa0700920:intron | 20.0% |
| !! | CTTATACAACTATAATAACT+TGG | + | chr4_4:72093535-72093554 | None:intergenic | 20.0% |
| !! | CAAGTTATTATAGTTGTATA+AGG | - | chr4_4:72093533-72093552 | Msa0700920:intron | 20.0% |
| !! | ATAATTCAGTTTGTATTTGT+AGG | - | chr4_4:72093674-72093693 | Msa0700920:intron | 20.0% |
| !! | TAATTCAGTTTGTATTTGTA+GGG | - | chr4_4:72093675-72093694 | Msa0700920:intron | 20.0% |
| !!! | TTTTTGATGTTGATGTTTTT+TGG | - | chr4_4:72093818-72093837 | Msa0700920:intron | 20.0% |
| !!! | GTATTTTATGAGTAAGAATA+GGG | - | chr4_4:72093939-72093958 | Msa0700920:intron | 20.0% |
| !! | TCATAACTGAATATTGAATA+AGG | + | chr4_4:72094866-72094885 | None:intergenic | 20.0% |
| !!! | TAAATTTAAACGAACAGTTT+TGG | - | chr4_4:72095265-72095284 | Msa0700920:intron | 20.0% |
| !!! | AACAGTTTTGGTTTAAATAA+TGG | - | chr4_4:72095277-72095296 | Msa0700920:intron | 20.0% |
| !!! | AATAATGGAAGATGTTAATT+AGG | - | chr4_4:72095292-72095311 | Msa0700920:CDS | 20.0% |
| !!! | ATAATGGAAGATGTTAATTA+GGG | - | chr4_4:72095293-72095312 | Msa0700920:CDS | 20.0% |
| !!! | AAATTATATGATTTTATGCG+AGG | - | chr4_4:72095591-72095610 | Msa0700920:CDS | 20.0% |
| !!! | TATTTTTGACAAAATTGGAA+TGG | + | chr4_4:72095943-72095962 | None:intergenic | 20.0% |
| !!! | AATTTGAGTTATATTTTGCT+GGG | - | chr4_4:72095990-72096009 | Msa0700920:intron | 20.0% |
| ! | TACCTACACCTTATAATTTA+GGG | + | chr4_4:72091558-72091577 | None:intergenic | 25.0% |
| !!! | AAATTTTGAGGGATCAAATT+GGG | - | chr4_4:72091604-72091623 | Msa0700920:three_prime_UTR | 25.0% |
| !!! | ATATGTATGTTTTGATTCAC+AGG | - | chr4_4:72091677-72091696 | Msa0700920:three_prime_UTR | 25.0% |
| ! | AAAGTTAGTAAAGGAGAAAA+AGG | - | chr4_4:72091719-72091738 | Msa0700920:three_prime_UTR | 25.0% |
| !!! | GAACTTTCTCTGAAATAAAT+TGG | - | chr4_4:72091870-72091889 | Msa0700920:intron | 25.0% |
| !! | AAATAAATTGGTTGTTTCAG+TGG | - | chr4_4:72091882-72091901 | Msa0700920:intron | 25.0% |
| ! | TATCTTGTACACAGTATATA+CGG | + | chr4_4:72092050-72092069 | None:intergenic | 25.0% |
| !!! | AATGTGTTATGTTTTTGTAC+GGG | - | chr4_4:72092092-72092111 | Msa0700920:intron | 25.0% |
| ! | GAACTTCAACTGAAATAAAT+TGG | - | chr4_4:72092127-72092146 | Msa0700920:intron | 25.0% |
| !! | AAATAAATTGGTTGTTTCAG+TGG | - | chr4_4:72091882-72091901 | Msa0700920:intron | 25.0% |
| !!! | AACAAGGACAAAATTTTAGT+TGG | - | chr4_4:72092224-72092243 | Msa0700920:intron | 25.0% |
| !!! | AGAAAGTGCTTTTTATTACA+AGG | + | chr4_4:72092478-72092497 | None:intergenic | 25.0% |
| ! | AAACAAAGATAACTTCTATG+AGG | + | chr4_4:72092557-72092576 | None:intergenic | 25.0% |
| !!! | AGAAGTTATCTTTGTTTTGT+AGG | - | chr4_4:72092560-72092579 | Msa0700920:CDS | 25.0% |
| ! | AGCTAAGAAAAAAAGAAGAA+AGG | - | chr4_4:72092595-72092614 | Msa0700920:CDS | 25.0% |
| ! | TAAGAAAAAAAGAAGAAAGG+AGG | - | chr4_4:72092598-72092617 | Msa0700920:CDS | 25.0% |
| !!! | TGCATTATTTAGTTTTTGAC+TGG | - | chr4_4:72093098-72093117 | Msa0700920:intron | 25.0% |
| !!! | GCATTATTTAGTTTTTGACT+GGG | - | chr4_4:72093099-72093118 | Msa0700920:intron | 25.0% |
| !!! | CATTATTTAGTTTTTGACTG+GGG | - | chr4_4:72093100-72093119 | Msa0700920:intron | 25.0% |
| !! | AAAGTTTTTCTGTTGCTAAT+GGG | - | chr4_4:72093610-72093629 | Msa0700920:intron | 25.0% |
| ! | GAGAGTAATTGATAGAAATA+TGG | - | chr4_4:72093917-72093936 | Msa0700920:intron | 25.0% |
| !! | GGTATTTTATGAGTAAGAAT+AGG | - | chr4_4:72093938-72093957 | Msa0700920:intron | 25.0% |
| ! | AGAATAATGCAAAATCATGA+AGG | - | chr4_4:72093983-72094002 | Msa0700920:intron | 25.0% |
| !! | AAATACAAGGAGAACATTTT+GGG | + | chr4_4:72094122-72094141 | None:intergenic | 25.0% |
| !! | TAATGTTTTCAGCAAATACA+AGG | + | chr4_4:72094135-72094154 | None:intergenic | 25.0% |
| !! | ATATTTGTGTGTTTTTCTCT+TGG | - | chr4_4:72094317-72094336 | Msa0700920:intron | 25.0% |
| ! | CAAAATTAATTTCCTTTAGC+AGG | - | chr4_4:72094593-72094612 | Msa0700920:intron | 25.0% |
| ! | TGGATACTGAATATTGAATA+TGG | + | chr4_4:72094728-72094747 | None:intergenic | 25.0% |
| ! | TTGAGATGAGAGATTATAAA+GGG | + | chr4_4:72094788-72094807 | None:intergenic | 25.0% |
| !! | TTTGAGATGAGAGATTATAA+AGG | + | chr4_4:72094789-72094808 | None:intergenic | 25.0% |
| !! | ATTAATAAGCCGTTTAGTTT+GGG | + | chr4_4:72094813-72094832 | None:intergenic | 25.0% |
| !!! | GTTTCCATGCAATTATTTTT+CGG | - | chr4_4:72094913-72094932 | Msa0700920:CDS | 25.0% |
| ! | TCATCTACGATATGAATATA+TGG | + | chr4_4:72095186-72095205 | None:intergenic | 25.0% |
| ! | TAATGGAAGATGTTAATTAG+GGG | - | chr4_4:72095294-72095313 | Msa0700920:CDS | 25.0% |
| ! | TCATAGAAACCAAGATATTA+GGG | + | chr4_4:72095464-72095483 | None:intergenic | 25.0% |
| ! | ATCATAGAAACCAAGATATT+AGG | + | chr4_4:72095465-72095484 | None:intergenic | 25.0% |
| !! | TTTTGTGAATCTTAACTTAC+TGG | + | chr4_4:72095502-72095521 | None:intergenic | 25.0% |
| ! | GCAATCAACATCATTTAATA+AGG | + | chr4_4:72095823-72095842 | None:intergenic | 25.0% |
| ! | GTAAATGAACAAAATTTGTC+AGG | + | chr4_4:72095921-72095940 | None:intergenic | 25.0% |
| !!! | CAATTTGAGTTATATTTTGC+TGG | - | chr4_4:72095989-72096008 | Msa0700920:intron | 25.0% |
| !! | CATTATCATATCTTTTTCCT+CGG | - | chr4_4:72096070-72096089 | Msa0700920:intron | 25.0% |
| TACCCTAAATTATAAGGTGT+AGG | - | chr4_4:72091553-72091572 | Msa0700920:three_prime_UTR | 30.0% | |
| GTACCTACACCTTATAATTT+AGG | + | chr4_4:72091559-72091578 | None:intergenic | 30.0% | |
| !! | CAAATTTTGAGGGATCAAAT+TGG | - | chr4_4:72091603-72091622 | Msa0700920:three_prime_UTR | 30.0% |
| TCCTTTACTAACTTTCATCA+TGG | + | chr4_4:72091714-72091733 | None:intergenic | 30.0% | |
| ! | AATCTTTTTCTTCTTTTCCC+CGG | + | chr4_4:72091753-72091772 | None:intergenic | 30.0% |
| CATGTCAAGATGAACAATAA+TGG | - | chr4_4:72091806-72091825 | Msa0700920:CDS | 30.0% | |
| ! | TCATAGAATGCAGCTTTTAA+AGG | - | chr4_4:72091906-72091925 | Msa0700920:intron | 30.0% |
| ! | CATAGAATGCAGCTTTTAAA+GGG | - | chr4_4:72091907-72091926 | Msa0700920:intron | 30.0% |
| !!! | TTCTTTCTTTTTCGGCTAAT+AGG | + | chr4_4:72091949-72091968 | None:intergenic | 30.0% |
| ! | TGTCCTTGTTCTTTCTTTTT+CGG | + | chr4_4:72091957-72091976 | None:intergenic | 30.0% |
| ! | GTTGATTTAGAAGTGCAAAA+CGG | - | chr4_4:72092003-72092022 | Msa0700920:intron | 30.0% |
| TCCTGAAATGGAGATTATAA+AGG | - | chr4_4:72092163-72092182 | Msa0700920:intron | 30.0% | |
| CCTGAAATGGAGATTATAAA+GGG | - | chr4_4:72092164-72092183 | Msa0700920:intron | 30.0% | |
| GGAGATTATAAAGGGAAAAA+AGG | - | chr4_4:72092172-72092191 | Msa0700920:intron | 30.0% | |
| TAATCGAAAAAGGAAGAACA+AGG | - | chr4_4:72092208-72092227 | Msa0700920:intron | 30.0% | |
| AAATCAACTTCTTCATCTTC+TGG | + | chr4_4:72092260-72092279 | None:intergenic | 30.0% | |
| ! | GTTGATTTAGAAGAGCAAAA+TGG | - | chr4_4:72092272-72092291 | Msa0700920:intron | 30.0% |
| !! | AAATGGTAAGTTGATGGTTA+CGG | - | chr4_4:72092289-72092308 | Msa0700920:intron | 30.0% |
| TCTGATATATGGAGGAAAAA+AGG | + | chr4_4:72092367-72092386 | None:intergenic | 30.0% | |
| ! | TTTTTCCTCCATATATCAGA+TGG | - | chr4_4:72092367-72092386 | Msa0700920:intron | 30.0% |
| ! | TTGTGATTCTAAAGAAGAGA+AGG | - | chr4_4:72092402-72092421 | Msa0700920:intron | 30.0% |
| TAGAGATTCTGATATTGAAG+CGG | - | chr4_4:72092444-72092463 | Msa0700920:CDS | 30.0% | |
| GAAAATGAATGTATGGCTTT+AGG | + | chr4_4:72092535-72092554 | None:intergenic | 30.0% | |
| CTATGAGGAAAATGAATGTA+TGG | + | chr4_4:72092542-72092561 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTCTGATGATTT+TGG | + | chr4_4:72092626-72092645 | None:intergenic | 30.0% |
| AAAGAGAGAACAAAATCATC+AGG | - | chr4_4:72092637-72092656 | Msa0700920:intron | 30.0% | |
| GACATTCATATTATTTCCTC+TGG | - | chr4_4:72092662-72092681 | Msa0700920:intron | 30.0% | |
| AATTACTGTATGTATATGCG+TGG | + | chr4_4:72092855-72092874 | None:intergenic | 30.0% | |
| AGAGTTTATATCTACTTACG+AGG | - | chr4_4:72093200-72093219 | Msa0700920:intron | 30.0% | |
| ATCTACTTACGAGGAAAAAT+TGG | - | chr4_4:72093209-72093228 | Msa0700920:intron | 30.0% | |
| TCTTCCTTAAAGCAAAATAG+AGG | - | chr4_4:72093254-72093273 | Msa0700920:intron | 30.0% | |
| ! | TTATTTTCCTTCATAAGGGA+GGG | - | chr4_4:72093487-72093506 | Msa0700920:intron | 30.0% |
| TATAAGGTTTAACGATGCTT+TGG | - | chr4_4:72093549-72093568 | Msa0700920:intron | 30.0% | |
| ! | CAAAGTTTTTCTGTTGCTAA+TGG | - | chr4_4:72093609-72093628 | Msa0700920:intron | 30.0% |
| ! | AAGTTTTTCTGTTGCTAATG+GGG | - | chr4_4:72093611-72093630 | Msa0700920:intron | 30.0% |
| AACTTCTAATACTGTGTCTA+TGG | + | chr4_4:72093739-72093758 | None:intergenic | 30.0% | |
| TATTCAAATTATACGCATGC+AGG | + | chr4_4:72093780-72093799 | None:intergenic | 30.0% | |
| !!! | ATGTTGATGTTTTTTGGCTT+AGG | - | chr4_4:72093824-72093843 | Msa0700920:intron | 30.0% |
| GCATAAAAAGTGACTTTATC+TGG | - | chr4_4:72093849-72093868 | Msa0700920:intron | 30.0% | |
| ATCAATTACTCTCTTTCTTG+AGG | + | chr4_4:72093910-72093929 | None:intergenic | 30.0% | |
| TCAGGATTTCTGAATTAGTT+AGG | + | chr4_4:72094066-72094085 | None:intergenic | 30.0% | |
| ! | AATACAAGGAGAACATTTTG+GGG | + | chr4_4:72094121-72094140 | None:intergenic | 30.0% |
| ! | CAAATACAAGGAGAACATTT+TGG | + | chr4_4:72094123-72094142 | None:intergenic | 30.0% |
| !!! | AGCTAGCTAAATAGTTTTAG+AGG | - | chr4_4:72094254-72094273 | Msa0700920:intron | 30.0% |
| !!! | TAGCTAAATAGTTTTAGAGG+TGG | - | chr4_4:72094257-72094276 | Msa0700920:intron | 30.0% |
| !! | AGAAAGGTGTTAGAACTTTA+GGG | + | chr4_4:72094548-72094567 | None:intergenic | 30.0% |
| AGTTAGTAAGTCTGTTAGTT+TGG | + | chr4_4:72094676-72094695 | None:intergenic | 30.0% | |
| !! | ATTATAAAGGGCATTGTTGT+GGG | + | chr4_4:72094776-72094795 | None:intergenic | 30.0% |
| !! | TTAATAAGCCGTTTAGTTTG+GGG | + | chr4_4:72094812-72094831 | None:intergenic | 30.0% |
| GATTAATAAGCCGTTTAGTT+TGG | + | chr4_4:72094814-72094833 | None:intergenic | 30.0% | |
| AACACTTAAGTATCACAAAG+TGG | + | chr4_4:72094836-72094855 | None:intergenic | 30.0% | |
| CCAAAATAAGTAACAGATGT+GGG | + | chr4_4:72094894-72094913 | None:intergenic | 30.0% | |
| ACCAAAATAAGTAACAGATG+TGG | + | chr4_4:72094895-72094914 | None:intergenic | 30.0% | |
| TTGACCGAAAAATAATTGCA+TGG | + | chr4_4:72094920-72094939 | None:intergenic | 30.0% | |
| !! | AATTATTTTTCGGTCAATGC+AGG | - | chr4_4:72094923-72094942 | Msa0700920:CDS | 30.0% |
| !! | AACTCCTGTTTGTTTCTTTT+TGG | + | chr4_4:72095090-72095109 | None:intergenic | 30.0% |
| AAAAAGAAACAAACAGGAGT+TGG | - | chr4_4:72095089-72095108 | Msa0700920:intron | 30.0% | |
| AATGGAAGATGTTAATTAGG+GGG | - | chr4_4:72095295-72095314 | Msa0700920:CDS | 30.0% | |
| ! | CATGCTAATGCAAATTTTGA+TGG | + | chr4_4:72095331-72095350 | None:intergenic | 30.0% |
| ATGATCGTTATCTTGTTGAT+TGG | - | chr4_4:72095558-72095577 | Msa0700920:CDS | 30.0% | |
| TGATACATCCACAATAACAT+AGG | + | chr4_4:72096052-72096071 | None:intergenic | 30.0% | |
| TCAGATACCTTGAGAAATGA+GGG | + | chr4_4:72091485-72091504 | None:intergenic | 35.0% | |
| TATAAGGTGTAGGTACTACT+AGG | - | chr4_4:72091563-72091582 | Msa0700920:three_prime_UTR | 35.0% | |
| GCCATGATGAAAGTTAGTAA+AGG | - | chr4_4:72091710-72091729 | Msa0700920:three_prime_UTR | 35.0% | |
| ! | GTAAAGGAGAAAAAGGCATA+CGG | - | chr4_4:72091726-72091745 | Msa0700920:three_prime_UTR | 35.0% |
| TAGCCGAAAAAGAAAGAACA+AGG | - | chr4_4:72091951-72091970 | Msa0700920:intron | 35.0% | |
| CCCTTTATAATCTCCATTTC+AGG | + | chr4_4:72092167-72092186 | None:intergenic | 35.0% | |
| !!! | GTTCTTCCTTTTTCGATTAG+TGG | + | chr4_4:72092207-72092226 | None:intergenic | 35.0% |
| ! | AGAGCAAAATGGTAAGTTGA+TGG | - | chr4_4:72092283-72092302 | Msa0700920:intron | 35.0% |
| TCTAAAGAAGAGAAGGTCAA+AGG | - | chr4_4:72092409-72092428 | Msa0700920:intron | 35.0% | |
| AATACCATCAAAGTAGACCA+GGG | - | chr4_4:72093151-72093170 | Msa0700920:intron | 35.0% | |
| TTACGAGGAAAAATTGGAAG+AGG | - | chr4_4:72093215-72093234 | Msa0700920:intron | 35.0% | |
| ! | CCAACCTCTATTTTGCTTTA+AGG | + | chr4_4:72093261-72093280 | None:intergenic | 35.0% |
| CCTTAAAGCAAAATAGAGGT+TGG | - | chr4_4:72093258-72093277 | Msa0700920:intron | 35.0% | |
| AGGGTTATCTGACTATAATC+AGG | + | chr4_4:72093335-72093354 | None:intergenic | 35.0% | |
| ! | TCAGATAACCCTTTTATCAG+TGG | - | chr4_4:72093343-72093362 | Msa0700920:intron | 35.0% |
| ! | CAGATAACCCTTTTATCAGT+GGG | - | chr4_4:72093344-72093363 | Msa0700920:intron | 35.0% |
| ! | AGATAACCCTTTTATCAGTG+GGG | - | chr4_4:72093345-72093364 | Msa0700920:intron | 35.0% |
| CATTATCCCCACTGATAAAA+GGG | + | chr4_4:72093354-72093373 | None:intergenic | 35.0% | |
| TCATTATCCCCACTGATAAA+AGG | + | chr4_4:72093355-72093374 | None:intergenic | 35.0% | |
| !! | GTTATTTTCCTTCATAAGGG+AGG | - | chr4_4:72093486-72093505 | Msa0700920:intron | 35.0% |
| !! | TTGGTGCTAAATATGCTGTT+AGG | - | chr4_4:72093642-72093661 | Msa0700920:intron | 35.0% |
| CTAAATATGCTGTTAGGATG+TGG | - | chr4_4:72093648-72093667 | Msa0700920:intron | 35.0% | |
| ! | TCAACATCAAAAAGCACGTA+AGG | + | chr4_4:72093811-72093830 | None:intergenic | 35.0% |
| CATTATTCTTCTGCAATCAG+GGG | + | chr4_4:72093972-72093991 | None:intergenic | 35.0% | |
| GCATTATTCTTCTGCAATCA+GGG | + | chr4_4:72093973-72093992 | None:intergenic | 35.0% | |
| TGCATTATTCTTCTGCAATC+AGG | + | chr4_4:72093974-72093993 | None:intergenic | 35.0% | |
| TGAGATAGTTGGAAGAAACA+TGG | + | chr4_4:72094033-72094052 | None:intergenic | 35.0% | |
| ACTATTGTTAGATGTCCATC+AGG | + | chr4_4:72094097-72094116 | None:intergenic | 35.0% | |
| ! | ATACAAGGAGAACATTTTGG+GGG | + | chr4_4:72094120-72094139 | None:intergenic | 35.0% |
| GGTAATCATGTATCACAGAT+TGG | + | chr4_4:72094171-72094190 | None:intergenic | 35.0% | |
| ATACAGATGAGAGCCAATAA+TGG | - | chr4_4:72094194-72094213 | Msa0700920:intron | 35.0% | |
| ! | ATTTCTTTAGAGACATCCAC+GGG | + | chr4_4:72094293-72094312 | None:intergenic | 35.0% |
| ! | GATTTCTTTAGAGACATCCA+CGG | + | chr4_4:72094294-72094313 | None:intergenic | 35.0% |
| GAGTGAACTCATAGATAACT+TGG | - | chr4_4:72094378-72094397 | Msa0700920:CDS | 35.0% | |
| ! | GCTCATTAAAGTACCCATTT+CGG | + | chr4_4:72094449-72094468 | None:intergenic | 35.0% |
| AGCCATGGAACAAACAAAAA+GGG | - | chr4_4:72094466-72094485 | Msa0700920:intron | 35.0% | |
| !! | TTCCCTTTTTGTTTGTTCCA+TGG | + | chr4_4:72094471-72094490 | None:intergenic | 35.0% |
| GTATGCAAAATGAAGCTTGA+AGG | + | chr4_4:72094518-72094537 | None:intergenic | 35.0% | |
| !! | GAGAAAGGTGTTAGAACTTT+AGG | + | chr4_4:72094549-72094568 | None:intergenic | 35.0% |
| ACCTTTCTCTTCCTTAAGTT+GGG | - | chr4_4:72094560-72094579 | Msa0700920:intron | 35.0% | |
| GTGAGATGAGAGATTATGAA+GGG | + | chr4_4:72094650-72094669 | None:intergenic | 35.0% | |
| TGTGAGATGAGAGATTATGA+AGG | + | chr4_4:72094651-72094670 | None:intergenic | 35.0% | |
| TCAATATTCAGTATCCAAGC+AGG | - | chr4_4:72094731-72094750 | Msa0700920:intron | 35.0% | |
| !! | GATTATAAAGGGCATTGTTG+TGG | + | chr4_4:72094777-72094796 | None:intergenic | 35.0% |
| ATCTCAAACCCCAAACTAAA+CGG | - | chr4_4:72094801-72094820 | Msa0700920:intron | 35.0% | |
| !! | CCCACATCTGTTACTTATTT+TGG | - | chr4_4:72094891-72094910 | Msa0700920:CDS | 35.0% |
| AGCTGCTGCAGAAAATAAAT+TGG | - | chr4_4:72095064-72095083 | Msa0700920:intron | 35.0% | |
| TTGGCCAAAAAGAAACAAAC+AGG | - | chr4_4:72095083-72095102 | Msa0700920:intron | 35.0% | |
| !!! | GAGCTTCTCTTTTTTGAAAG+CGG | + | chr4_4:72095127-72095146 | None:intergenic | 35.0% |
| AAAAGAGAAGCTCAGAGAAA+TGG | - | chr4_4:72095134-72095153 | Msa0700920:CDS | 35.0% | |
| ATGGAAGATGTTAATTAGGG+GGG | - | chr4_4:72095296-72095315 | Msa0700920:CDS | 35.0% | |
| TAGGGTTATTGCATATAAGC+AGG | - | chr4_4:72095403-72095422 | Msa0700920:intron | 35.0% | |
| GAGAAACATCACAGAAGATA+AGG | + | chr4_4:72095437-72095456 | None:intergenic | 35.0% | |
| TTCTCACTTCCCTAATATCT+TGG | - | chr4_4:72095452-72095471 | Msa0700920:intron | 35.0% | |
| ATCTTAACTTACTGGCAGAA+GGG | + | chr4_4:72095494-72095513 | None:intergenic | 35.0% | |
| AATCTTAACTTACTGGCAGA+AGG | + | chr4_4:72095495-72095514 | None:intergenic | 35.0% | |
| TGCGTTAACCTATGTTATTG+TGG | - | chr4_4:72096041-72096060 | Msa0700920:intron | 35.0% | |
| ACATGACAAAAAGATAACCG+AGG | + | chr4_4:72096090-72096109 | None:intergenic | 35.0% | |
| CTCAGATACCTTGAGAAATG+AGG | + | chr4_4:72091486-72091505 | None:intergenic | 40.0% | |
| AGAAAGTTCAACAATGTGCG+AGG | + | chr4_4:72091859-72091878 | None:intergenic | 40.0% | |
| TTGTACACAGTATATACGGC+AGG | + | chr4_4:72092046-72092065 | None:intergenic | 40.0% | |
| TGTTTCAGTGGATCCTGAAA+TGG | - | chr4_4:72092151-72092170 | Msa0700920:intron | 40.0% | |
| AAGCCACCACTAATCGAAAA+AGG | - | chr4_4:72092198-72092217 | Msa0700920:intron | 40.0% | |
| !!! | CTTCCTTTTTCGATTAGTGG+TGG | + | chr4_4:72092204-72092223 | None:intergenic | 40.0% |
| CTACTCCATCTGATATATGG+AGG | + | chr4_4:72092375-72092394 | None:intergenic | 40.0% | |
| CCACTACTCCATCTGATATA+TGG | + | chr4_4:72092378-72092397 | None:intergenic | 40.0% | |
| CCATATATCAGATGGAGTAG+TGG | - | chr4_4:72092375-72092394 | Msa0700920:intron | 40.0% | |
| ATCAGAATCTCTACGCTTCT+TGG | + | chr4_4:72092437-72092456 | None:intergenic | 40.0% | |
| GCGTGGCAACTATTGTAAAT+TGG | + | chr4_4:72092838-72092857 | None:intergenic | 40.0% | |
| ATGTCTACATGCTCACTGAT+AGG | + | chr4_4:72092955-72092974 | None:intergenic | 40.0% | |
| ! | TCTTTCAACCTGTTGACTAC+TGG | - | chr4_4:72092990-72093009 | Msa0700920:intron | 40.0% |
| GAATACCATCAAAGTAGACC+AGG | - | chr4_4:72093150-72093169 | Msa0700920:intron | 40.0% | |
| TGCTAATGGGGTATGTTAGT+TGG | - | chr4_4:72093623-72093642 | Msa0700920:intron | 40.0% | |
| AATATGCTGTTAGGATGTGG+AGG | - | chr4_4:72093651-72093670 | Msa0700920:intron | 40.0% | |
| TGGAAGAAACATGGCATGTT+GGG | + | chr4_4:72094024-72094043 | None:intergenic | 40.0% | |
| TTGGAAGAAACATGGCATGT+TGG | + | chr4_4:72094025-72094044 | None:intergenic | 40.0% | |
| GTTAGTTGAGCTGAGATAGT+TGG | + | chr4_4:72094044-72094063 | None:intergenic | 40.0% | |
| CTGAAAACATTATTCCGCCA+AGG | - | chr4_4:72094143-72094162 | Msa0700920:intron | 40.0% | |
| TGTATCACAGATTGGAACCT+TGG | + | chr4_4:72094163-72094182 | None:intergenic | 40.0% | |
| ! | ATTGGCTCTCATCTGTATCT+TGG | + | chr4_4:72094192-72094211 | None:intergenic | 40.0% |
| TTGACCATGACATCCGAAAT+GGG | - | chr4_4:72094433-72094452 | Msa0700920:intron | 40.0% | |
| ATGGGTACTTTAATGAGCCA+TGG | - | chr4_4:72094451-72094470 | Msa0700920:intron | 40.0% | |
| GAGCCATGGAACAAACAAAA+AGG | - | chr4_4:72094465-72094484 | Msa0700920:intron | 40.0% | |
| AGGAGGAATAGGTCTGTATT+GGG | + | chr4_4:72094498-72094517 | None:intergenic | 40.0% | |
| AAGGAGGAATAGGTCTGTAT+TGG | + | chr4_4:72094499-72094518 | None:intergenic | 40.0% | |
| ATGAAGCTTGAAGGAGGAAT+AGG | + | chr4_4:72094509-72094528 | None:intergenic | 40.0% | |
| TGCAAAATGAAGCTTGAAGG+AGG | + | chr4_4:72094515-72094534 | None:intergenic | 40.0% | |
| CACCTTTCTCTTCCTTAAGT+TGG | - | chr4_4:72094559-72094578 | Msa0700920:intron | 40.0% | |
| ATTTCCTTTAGCAGGACGAA+TGG | - | chr4_4:72094601-72094620 | Msa0700920:intron | 40.0% | |
| !! | ATTATGAAGGGCATTGTCGT+GGG | + | chr4_4:72094638-72094657 | None:intergenic | 40.0% |
| ! | TAGTTTTCTTCCTACCCTTG+TGG | + | chr4_4:72095004-72095023 | None:intergenic | 40.0% |
| AAAACTACTGACGCTGAAAG+TGG | - | chr4_4:72095017-72095036 | Msa0700920:intron | 40.0% | |
| AAACTACTGACGCTGAAAGT+GGG | - | chr4_4:72095018-72095037 | Msa0700920:intron | 40.0% | |
| AAGATGTTAATTAGGGGGGT+TGG | - | chr4_4:72095300-72095319 | Msa0700920:CDS | 40.0% | |
| AGATGTTAATTAGGGGGGTT+GGG | - | chr4_4:72095301-72095320 | Msa0700920:CDS | 40.0% | |
| ! | TGATTTAAGACAGCGTCTAG+GGG | + | chr4_4:72095655-72095674 | None:intergenic | 40.0% |
| ! | CTGATTTAAGACAGCGTCTA+GGG | + | chr4_4:72095656-72095675 | None:intergenic | 40.0% |
| ! | TGTTTTGCTTGCAGAGCTAA+TGG | - | chr4_4:72095729-72095748 | Msa0700920:intron | 40.0% |
| ! | AATGATGTTGATTGCAGCCA+AGG | - | chr4_4:72095828-72095847 | Msa0700920:CDS | 40.0% |
| ! | TGAGTTATATTTTGCTGGGC+TGG | - | chr4_4:72095994-72096013 | Msa0700920:intron | 40.0% |
| GGTTAACGCAATCCAATGAT+GGG | + | chr4_4:72096031-72096050 | None:intergenic | 40.0% | |
| AGGTTAACGCAATCCAATGA+TGG | + | chr4_4:72096032-72096051 | None:intergenic | 40.0% | |
| TTTCGCTCCCTCATTTCTCA+AGG | - | chr4_4:72091475-72091494 | Msa0700920:three_prime_UTR | 45.0% | |
| AGGTGTAGGTACTACTAGGT+TGG | - | chr4_4:72091567-72091586 | Msa0700920:three_prime_UTR | 45.0% | |
| GGTGTAGGTACTACTAGGTT+GGG | - | chr4_4:72091568-72091587 | Msa0700920:three_prime_UTR | 45.0% | |
| GTGTAGGTACTACTAGGTTG+GGG | - | chr4_4:72091569-72091588 | Msa0700920:three_prime_UTR | 45.0% | |
| GAGGGATCAAATTGGGAGTT+AGG | - | chr4_4:72091611-72091630 | Msa0700920:three_prime_UTR | 45.0% | |
| !! | GTAAGTTGATGGTTACGGTG+TGG | - | chr4_4:72092294-72092313 | Msa0700920:intron | 45.0% |
| GGAGATGATGACTGCTCAAA+TGG | - | chr4_4:72092683-72092702 | Msa0700920:intron | 45.0% | |
| ATGCTCACTGATAGGCAGTA+GGG | + | chr4_4:72092947-72092966 | None:intergenic | 45.0% | |
| ! | ACCTGTTGACTACTGGAATG+TGG | - | chr4_4:72092997-72093016 | Msa0700920:intron | 45.0% |
| ACCACATTCCAGTAGTCAAC+AGG | + | chr4_4:72093001-72093020 | None:intergenic | 45.0% | |
| GGAATACTCAAACCACAGAG+TGG | - | chr4_4:72093121-72093140 | Msa0700920:intron | 45.0% | |
| TCAAACCACAGAGTGGATCA+TGG | - | chr4_4:72093128-72093147 | Msa0700920:intron | 45.0% | |
| GTATTCCATGATCCACTCTG+TGG | + | chr4_4:72093136-72093155 | None:intergenic | 45.0% | |
| AGCATCAAGTGCTAAGCACA+TGG | + | chr4_4:72093577-72093596 | None:intergenic | 45.0% | |
| GAAACATGGCATGTTGGGTA+AGG | + | chr4_4:72094019-72094038 | None:intergenic | 45.0% | |
| TAGATGTCCATCAGGACTGT+TGG | + | chr4_4:72094089-72094108 | None:intergenic | 45.0% | |
| ATCACAGATTGGAACCTTGG+CGG | + | chr4_4:72094160-72094179 | None:intergenic | 45.0% | |
| TTGTGAGCAATGAAGGTCTG+TGG | + | chr4_4:72094230-72094249 | None:intergenic | 45.0% | |
| GCTATCGTTGTGAGCAATGA+AGG | + | chr4_4:72094237-72094256 | None:intergenic | 45.0% | |
| CATTTCGGATGTCATGGTCA+AGG | + | chr4_4:72094434-72094453 | None:intergenic | 45.0% | |
| CTTGACCATGACATCCGAAA+TGG | - | chr4_4:72094432-72094451 | Msa0700920:intron | 45.0% | |
| AGTACCCATTTCGGATGTCA+TGG | + | chr4_4:72094440-72094459 | None:intergenic | 45.0% | |
| GCCCAACTTAAGGAAGAGAA+AGG | + | chr4_4:72094564-72094583 | None:intergenic | 45.0% | |
| GAAAGGTGAAGCCCAACTTA+AGG | + | chr4_4:72094574-72094593 | None:intergenic | 45.0% | |
| !! | GATTATGAAGGGCATTGTCG+TGG | + | chr4_4:72094639-72094658 | None:intergenic | 45.0% |
| !! | CATTGTTGTGGGAGAGTACT+AGG | + | chr4_4:72094765-72094784 | None:intergenic | 45.0% |
| GATGTTAATTAGGGGGGTTG+GGG | - | chr4_4:72095302-72095321 | Msa0700920:CDS | 45.0% | |
| ATGTTAATTAGGGGGGTTGG+GGG | - | chr4_4:72095303-72095322 | Msa0700920:CDS | 45.0% | |
| CGAGGCTCATTCATGCTTTA+CGG | - | chr4_4:72095609-72095628 | Msa0700920:CDS | 45.0% | |
| ! | GCTGATTTAAGACAGCGTCT+AGG | + | chr4_4:72095657-72095676 | None:intergenic | 45.0% |
| GGAACTGCAGAGCAAATTTG+AGG | - | chr4_4:72095750-72095769 | Msa0700920:CDS | 45.0% | |
| ACTGCAGAGCAAATTTGAGG+AGG | - | chr4_4:72095753-72095772 | Msa0700920:CDS | 45.0% | |
| AAGAAAAGAACCTGCGACCT+TGG | + | chr4_4:72095848-72095867 | None:intergenic | 45.0% | |
| ! | AAGGTCGCAGGTTCTTTTCT+TGG | - | chr4_4:72095847-72095866 | Msa0700920:exon | 45.0% |
| ! | AGGTCGCAGGTTCTTTTCTT+GGG | - | chr4_4:72095848-72095867 | Msa0700920:exon | 45.0% |
| !! | GCAATCCAATGATGGGCATA+AGG | + | chr4_4:72096024-72096043 | None:intergenic | 45.0% |
| !!! | ATAAAATCATATAATTTTTA+AGG | + | chr4_4:72095588-72095607 | None:intergenic | 5.0% |
| GAGTTTCCACCTGCGTTTAG+CGG | + | chr4_4:72091441-72091460 | None:intergenic | 50.0% | |
| ! | GGAGAAAAAGGCATACGGAC+CGG | - | chr4_4:72091731-72091750 | Msa0700920:exon | 50.0% |
| ! | GAGAAAAAGGCATACGGACC+GGG | - | chr4_4:72091732-72091751 | Msa0700920:exon | 50.0% |
| ! | AGAAAAAGGCATACGGACCG+GGG | - | chr4_4:72091733-72091752 | Msa0700920:exon | 50.0% |
| TGAGCAGTCATCATCTCCAG+AGG | + | chr4_4:72092681-72092700 | None:intergenic | 50.0% | |
| AGTAGGGTGGATGTTGGCAA+AGG | + | chr4_4:72092931-72092950 | None:intergenic | 50.0% | |
| ATAGGCAGTAGGGTGGATGT+TGG | + | chr4_4:72092937-72092956 | None:intergenic | 50.0% | |
| CATGCTCACTGATAGGCAGT+AGG | + | chr4_4:72092948-72092967 | None:intergenic | 50.0% | |
| CCAACCCTGGTCTACTTTGA+TGG | + | chr4_4:72093158-72093177 | None:intergenic | 50.0% | |
| CCATCAAAGTAGACCAGGGT+TGG | - | chr4_4:72093155-72093174 | Msa0700920:intron | 50.0% | |
| TCAAAGTAGACCAGGGTTGG+AGG | - | chr4_4:72093158-72093177 | Msa0700920:intron | 50.0% | |
| TGTTGCAAAACCTCCAACCC+TGG | + | chr4_4:72093171-72093190 | None:intergenic | 50.0% | |
| TCCTTCATAAGGGAGGGCTA+AGG | - | chr4_4:72093493-72093512 | Msa0700920:intron | 50.0% | |
| CCTTCATAAGGGAGGGCTAA+GGG | - | chr4_4:72093494-72093513 | Msa0700920:intron | 50.0% | |
| ACATGGCATGTTGGGTAAGG+AGG | + | chr4_4:72094016-72094035 | None:intergenic | 50.0% | |
| ATCCTGACCAACAGTCCTGA+TGG | - | chr4_4:72094079-72094098 | Msa0700920:intron | 50.0% | |
| TGAGAGCCAATAATGGCCTC+TGG | - | chr4_4:72094201-72094220 | Msa0700920:intron | 50.0% | |
| GAGAGCCAATAATGGCCTCT+GGG | - | chr4_4:72094202-72094221 | Msa0700920:intron | 50.0% | |
| AGAGCCAATAATGGCCTCTG+GGG | - | chr4_4:72094203-72094222 | Msa0700920:intron | 50.0% | |
| ! | AGGTGGCTTCTATTTTCCCG+TGG | - | chr4_4:72094274-72094293 | Msa0700920:intron | 50.0% |
| GTGGCACATGTTTCAGCAAG+AGG | - | chr4_4:72094353-72094372 | Msa0700920:CDS | 50.0% | |
| TAGGCCATTCGTCCTGCTAA+AGG | + | chr4_4:72094608-72094627 | None:intergenic | 50.0% | |
| !! | CATTGTCGTGGGAGAGTACT+AGG | + | chr4_4:72094627-72094646 | None:intergenic | 50.0% |
| ACTAGGTCTTTCGTCCTGCT+TGG | + | chr4_4:72094748-72094767 | None:intergenic | 50.0% | |
| AAAGAAGCCCTTGCTGCAGA+AGG | - | chr4_4:72094957-72094976 | Msa0700920:CDS | 50.0% | |
| GCTGAAAGTGGGATTGCTGT+GGG | - | chr4_4:72095029-72095048 | Msa0700920:intron | 50.0% | |
| TCTAGGGGTGAGGGAAAATG+GGG | + | chr4_4:72095640-72095659 | None:intergenic | 50.0% | |
| GTCTAGGGGTGAGGGAAAAT+GGG | + | chr4_4:72095641-72095660 | None:intergenic | 50.0% | |
| TGCAACAGTTGAGAGCTGCT+AGG | - | chr4_4:72095788-72095807 | Msa0700920:CDS | 50.0% | |
| ! | GGTCGCAGGTTCTTTTCTTG+GGG | - | chr4_4:72095849-72095868 | Msa0700920:exon | 50.0% |
| ! | GTCGCAGGTTCTTTTCTTGG+GGG | - | chr4_4:72095850-72095869 | Msa0700920:exon | 50.0% |
| ! | AGGTTCTTTTCTTGGGGGAG+CGG | - | chr4_4:72095855-72095874 | Msa0700920:exon | 50.0% |
| GCGTTCCTTATGCCCATCAT+TGG | - | chr4_4:72096016-72096035 | Msa0700920:intron | 50.0% | |
| CTCACTGATAGGCAGTAGGG+TGG | + | chr4_4:72092944-72092963 | None:intergenic | 55.0% | |
| CCCTTAGCCCTCCCTTATGA+AGG | + | chr4_4:72093497-72093516 | None:intergenic | 55.0% | |
| GTCCATCAGGACTGTTGGTC+AGG | + | chr4_4:72094084-72094103 | None:intergenic | 55.0% | |
| TGGACCCCAGAGGCCATTAT+TGG | + | chr4_4:72094210-72094229 | None:intergenic | 55.0% | |
| TCTTGGTCATTGCTGCAGCG+TGG | - | chr4_4:72094334-72094353 | Msa0700920:intron | 55.0% | |
| CCATCCTCCTTCTGCAGCAA+GGG | + | chr4_4:72094967-72094986 | None:intergenic | 55.0% | |
| TCCATCCTCCTTCTGCAGCA+AGG | + | chr4_4:72094968-72094987 | None:intergenic | 55.0% | |
| TGCTGCAGAAGGAGGATGGA+CGG | - | chr4_4:72094968-72094987 | Msa0700920:CDS | 55.0% | |
| ACGGTGGTTCAGCACCACAA+GGG | - | chr4_4:72094987-72095006 | Msa0700920:intron | 55.0% | |
| TGGTTCAGCACCACAAGGGT+AGG | - | chr4_4:72094991-72095010 | Msa0700920:intron | 55.0% | |
| CGCTGAAAGTGGGATTGCTG+TGG | - | chr4_4:72095028-72095047 | Msa0700920:intron | 55.0% | |
| AAGTGGGATTGCTGTGGGCT+CGG | - | chr4_4:72095034-72095053 | Msa0700920:intron | 55.0% | |
| CGTCTAGGGGTGAGGGAAAA+TGG | + | chr4_4:72095642-72095661 | None:intergenic | 55.0% | |
| AAGACAGCGTCTAGGGGTGA+GGG | + | chr4_4:72095649-72095668 | None:intergenic | 55.0% | |
| TAAGACAGCGTCTAGGGGTG+AGG | + | chr4_4:72095650-72095669 | None:intergenic | 55.0% | |
| TTGATTGCAGCCAAGGTCGC+AGG | - | chr4_4:72095835-72095854 | Msa0700920:CDS | 55.0% | |
| AGAACCTGGCCGCTAAACGC+AGG | - | chr4_4:72091429-72091448 | Msa0700920:three_prime_UTR | 60.0% | |
| TGAAGGTCTGTGGACCCCAG+AGG | + | chr4_4:72094220-72094239 | None:intergenic | 60.0% | |
| GAAGCCCTTGCTGCAGAAGG+AGG | - | chr4_4:72094960-72094979 | Msa0700920:CDS | 60.0% | |
| CCCTTGCTGCAGAAGGAGGA+TGG | - | chr4_4:72094964-72094983 | Msa0700920:CDS | 60.0% | |
| TGCAGAAGGAGGATGGACGG+TGG | - | chr4_4:72094971-72094990 | Msa0700920:CDS | 60.0% | |
| GACGGTGGTTCAGCACCACA+AGG | - | chr4_4:72094986-72095005 | Msa0700920:intron | 60.0% | |
| ACCTGGCCGCTAAACGCAGG+TGG | - | chr4_4:72091432-72091451 | Msa0700920:three_prime_UTR | 65.0% | |
| TCCACCTGCGTTTAGCGGCC+AGG | + | chr4_4:72091436-72091455 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72091428 | 72096147 | 72091428 | ID=Msa0700920;Name=Msa0700920 |
| chr4_4 | mRNA | 72091428 | 72096147 | 72091428 | ID=Msa0700920-mRNA-1;Parent=Msa0700920;Name=Msa0700920-mRNA-1;_AED=0.39;_eAED=0.39;_QI=83|1|1|1|0.87|0.77|9|319|330 |
| chr4_4 | exon | 72091428 | 72091832 | 72091428 | ID=Msa0700920-mRNA-1:exon:22066;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72092420 | 72092630 | 72092420 | ID=Msa0700920-mRNA-1:exon:22065;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72094339 | 72094436 | 72094339 | ID=Msa0700920-mRNA-1:exon:22064;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72094862 | 72094993 | 72094862 | ID=Msa0700920-mRNA-1:exon:22063;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72095097 | 72095189 | 72095097 | ID=Msa0700920-mRNA-1:exon:22062;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72095282 | 72095416 | 72095282 | ID=Msa0700920-mRNA-1:exon:22061;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72095551 | 72095673 | 72095551 | ID=Msa0700920-mRNA-1:exon:22060;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72095748 | 72095876 | 72095748 | ID=Msa0700920-mRNA-1:exon:22059;Parent=Msa0700920-mRNA-1 |
| chr4_4 | exon | 72096079 | 72096147 | 72096079 | ID=Msa0700920-mRNA-1:exon:22058;Parent=Msa0700920-mRNA-1 |
| chr4_4 | five_prime_UTR | 72096079 | 72096147 | 72096079 | ID=Msa0700920-mRNA-1:five_prime_utr;Parent=Msa0700920-mRNA-1 |
| chr4_4 | five_prime_UTR | 72095863 | 72095876 | 72095863 | ID=Msa0700920-mRNA-1:five_prime_utr;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72095748 | 72095862 | 72095748 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72095551 | 72095673 | 72095551 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72095282 | 72095416 | 72095282 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72095097 | 72095189 | 72095097 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72094862 | 72094993 | 72094862 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72094339 | 72094436 | 72094339 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72092420 | 72092630 | 72092420 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | CDS | 72091747 | 72091832 | 72091747 | ID=Msa0700920-mRNA-1:cds;Parent=Msa0700920-mRNA-1 |
| chr4_4 | three_prime_UTR | 72091428 | 72091746 | 72091428 | ID=Msa0700920-mRNA-1:three_prime_utr;Parent=Msa0700920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
