Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336100 | XP_013470121.1 | 97.704 | 392 | 4 | 2 | 1 | 388 | 1 | 391 | 0.0 | 775 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336100 | sp|Q9ZU52|ALFP3_ARATH | 84.399 | 391 | 58 | 1 | 1 | 388 | 1 | 391 | 0.0 | 677 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336100 | A0A072VQ58 | 97.704 | 392 | 4 | 2 | 1 | 388 | 1 | 391 | 0.0 | 775 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012810 | Msa1336100 | 0.807658 | 4.538771e-50 | -8.615850e-47 |
Msa0012820 | Msa1336100 | 0.814758 | 1.308892e-51 | -8.615850e-47 |
Msa0043120 | Msa1336100 | 0.909033 | 8.900709e-82 | -8.615850e-47 |
Msa0043150 | Msa1336100 | 0.932124 | 1.362557e-94 | -8.615850e-47 |
Msa0059880 | Msa1336100 | 0.812227 | 4.714801e-51 | -8.615850e-47 |
Msa0061590 | Msa1336100 | 0.821754 | 3.412477e-53 | -8.615850e-47 |
Msa0061600 | Msa1336100 | 0.839660 | 1.387560e-57 | -8.615850e-47 |
Msa0084160 | Msa1336100 | 0.800370 | 1.487837e-48 | -8.615850e-47 |
Msa0106130 | Msa1336100 | 0.824564 | 7.539001e-54 | -8.615850e-47 |
Msa0605470 | Msa1336100 | 0.823485 | 1.350192e-53 | -8.615850e-47 |
Msa0624930 | Msa1336100 | 0.823360 | 1.444553e-53 | -8.615850e-47 |
Msa0629720 | Msa1336100 | 0.816592 | 5.108762e-52 | -8.615850e-47 |
Msa0643840 | Msa1336100 | 0.811441 | 6.989464e-51 | -8.615850e-47 |
Msa0645120 | Msa1336100 | 0.823839 | 1.115575e-53 | -8.615850e-47 |
Msa0667600 | Msa1336100 | 0.820676 | 6.047959e-53 | -8.615850e-47 |
Msa0668220 | Msa1336100 | 0.819902 | 9.101412e-53 | -8.615850e-47 |
Msa0671400 | Msa1336100 | 0.852805 | 3.627955e-61 | -8.615850e-47 |
Msa0672780 | Msa1336100 | 0.817458 | 3.263409e-52 | -8.615850e-47 |
Msa0678620 | Msa1336100 | 0.808250 | 3.396166e-50 | -8.615850e-47 |
Msa0716600 | Msa1336100 | 0.801201 | 1.006821e-48 | -8.615850e-47 |
Msa0716980 | Msa1336100 | 0.810547 | 1.091965e-50 | -8.615850e-47 |
Msa0727480 | Msa1336100 | 0.803553 | 3.300241e-49 | -8.615850e-47 |
Msa0730890 | Msa1336100 | 0.802729 | 4.887188e-49 | -8.615850e-47 |
Msa0732970 | Msa1336100 | 0.806472 | 8.091739e-50 | -8.615850e-47 |
Msa0758150 | Msa1336100 | 0.826824 | 2.194764e-54 | -8.615850e-47 |
Msa0768670 | Msa1336100 | 0.809043 | 2.299022e-50 | -8.615850e-47 |
Msa0768720 | Msa1336100 | 0.809528 | 1.809976e-50 | -8.615850e-47 |
Msa0806930 | Msa1336100 | 0.812121 | 4.972440e-51 | -8.615850e-47 |
Msa0813840 | Msa1336100 | 0.802063 | 6.702081e-49 | -8.615850e-47 |
Msa0814160 | Msa1336100 | 0.821402 | 4.115401e-53 | -8.615850e-47 |
Msa0817100 | Msa1336100 | 0.812066 | 5.109861e-51 | -8.615850e-47 |
Msa0824860 | Msa1336100 | 0.804255 | 2.358564e-49 | -8.615850e-47 |
Msa0831890 | Msa1336100 | 0.803313 | 3.700930e-49 | -8.615850e-47 |
Msa0139270 | Msa1336100 | 0.807298 | 5.412029e-50 | -8.615850e-47 |
Msa0150910 | Msa1336100 | 0.812212 | 4.749510e-51 | -8.615850e-47 |
Msa0176620 | Msa1336100 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
Msa0190890 | Msa1336100 | 0.832677 | 8.248513e-56 | -8.615850e-47 |
Msa0191100 | Msa1336100 | 0.829375 | 5.331991e-55 | -8.615850e-47 |
Msa0233210 | Msa1336100 | 0.824193 | 9.214003e-54 | -8.615850e-47 |
Msa0238110 | Msa1336100 | 0.805994 | 1.020220e-49 | -8.615850e-47 |
Msa1233620 | Msa1336100 | 0.811506 | 6.767956e-51 | -8.615850e-47 |
Msa1275840 | Msa1336100 | 0.825801 | 3.845365e-54 | -8.615850e-47 |
Msa1281370 | Msa1336100 | 0.805785 | 1.128566e-49 | -8.615850e-47 |
Msa1299310 | Msa1336100 | 0.806369 | 8.504922e-50 | -8.615850e-47 |
Msa1300610 | Msa1336100 | 0.800224 | 1.593549e-48 | -8.615850e-47 |
Msa1314020 | Msa1336100 | 0.822440 | 2.365918e-53 | -8.615850e-47 |
Msa1320530 | Msa1336100 | 0.804376 | 2.225279e-49 | -8.615850e-47 |
Msa1323120 | Msa1336100 | 0.815429 | 9.287877e-52 | -8.615850e-47 |
Msa1336100 | Msa1350490 | 0.812525 | 4.057557e-51 | -8.615850e-47 |
Msa1336100 | Msa1363690 | 0.816726 | 4.765667e-52 | -8.615850e-47 |
Msa1336100 | Msa1370930 | 0.834994 | 2.172598e-56 | -8.615850e-47 |
Msa1336100 | Msa1373560 | 0.824255 | 8.909890e-54 | -8.615850e-47 |
Msa1336100 | Msa1376070 | 0.814105 | 1.824639e-51 | -8.615850e-47 |
Msa1336100 | Msa1377520 | 0.815121 | 1.087469e-51 | -8.615850e-47 |
Msa1336100 | Msa1378950 | 0.823341 | 1.459606e-53 | -8.615850e-47 |
Msa1336100 | Msa1380740 | 0.802619 | 5.149301e-49 | -8.615850e-47 |
Msa1336100 | Msa1390040 | 0.811681 | 6.199385e-51 | -8.615850e-47 |
Msa1336100 | Msa1395690 | 0.810274 | 1.250423e-50 | -8.615850e-47 |
Msa1336100 | Msa1396550 | 0.829608 | 4.680172e-55 | -8.615850e-47 |
Msa1336100 | Msa1407210 | 0.819735 | 9.934747e-53 | -8.615850e-47 |
Msa1336100 | Msa1407670 | 0.820317 | 7.312299e-53 | -8.615850e-47 |
Msa1336100 | Msa1409600 | 0.808831 | 2.552640e-50 | -8.615850e-47 |
Msa1336100 | Msa1441300 | 0.825516 | 4.492359e-54 | -8.615850e-47 |
Msa1336100 | Msa1445780 | 0.840334 | 9.259155e-58 | -8.615850e-47 |
Msa1336100 | Msa1449770 | 0.825798 | 3.851516e-54 | -8.615850e-47 |
Msa1336100 | Msa1451660 | 0.929224 | 9.448327e-93 | -8.615850e-47 |
Msa1336100 | Msa1452920 | 0.801321 | 9.512697e-49 | -8.615850e-47 |
Msa1336100 | Msa1459610 | 0.812422 | 4.274118e-51 | -8.615850e-47 |
Msa1336100 | Msa1463590 | 0.814644 | 1.386788e-51 | -8.615850e-47 |
Msa0433680 | Msa1336100 | 0.816831 | 4.515186e-52 | -8.615850e-47 |
Msa0985250 | Msa1336100 | 0.814770 | 1.300509e-51 | -8.615850e-47 |
Msa0985290 | Msa1336100 | 0.801455 | 8.929987e-49 | -8.615850e-47 |
Msa0996980 | Msa1336100 | 0.803970 | 2.703225e-49 | -8.615850e-47 |
Msa1006170 | Msa1336100 | 0.825825 | 3.795626e-54 | -8.615850e-47 |
Msa1021620 | Msa1336100 | 0.800006 | 1.764537e-48 | -8.615850e-47 |
Msa1026730 | Msa1336100 | 0.807848 | 4.135467e-50 | -8.615850e-47 |
Msa1036020 | Msa1336100 | 0.820403 | 6.988129e-53 | -8.615850e-47 |
Msa1040730 | Msa1336100 | 0.809935 | 1.479306e-50 | -8.615850e-47 |
Msa1061670 | Msa1336100 | 0.807739 | 4.362666e-50 | -8.615850e-47 |
Msa1061760 | Msa1336100 | 0.808030 | 3.783922e-50 | -8.615850e-47 |
Msa1064940 | Msa1336100 | 0.814687 | 1.356820e-51 | -8.615850e-47 |
Msa1076830 | Msa1336100 | 0.802145 | 6.445560e-49 | -8.615850e-47 |
Msa1076900 | Msa1336100 | 0.800506 | 1.395723e-48 | -8.615850e-47 |
Msa1100560 | Msa1336100 | 0.802007 | 6.881132e-49 | -8.615850e-47 |
Msa0266640 | Msa1336100 | 0.818355 | 2.046694e-52 | -8.615850e-47 |
Msa0278460 | Msa1336100 | 0.803112 | 4.071745e-49 | -8.615850e-47 |
Msa0278940 | Msa1336100 | 0.812452 | 4.210729e-51 | -8.615850e-47 |
Msa0311540 | Msa1336100 | 0.817289 | 3.562503e-52 | -8.615850e-47 |
Msa0318370 | Msa1336100 | 0.805100 | 1.570985e-49 | -8.615850e-47 |
Msa0349910 | Msa1336100 | 0.802541 | 5.341239e-49 | -8.615850e-47 |
Msa0356250 | Msa1336100 | 0.815529 | 8.823505e-52 | -8.615850e-47 |
Msa1109880 | Msa1336100 | 0.827754 | 1.313617e-54 | -8.615850e-47 |
Msa1109890 | Msa1336100 | 0.808331 | 3.263756e-50 | -8.615850e-47 |
Msa1126460 | Msa1336100 | 0.819142 | 1.356299e-52 | -8.615850e-47 |
Msa1136060 | Msa1336100 | 0.817273 | 3.591576e-52 | -8.615850e-47 |
Msa1156670 | Msa1336100 | 0.804962 | 1.679015e-49 | -8.615850e-47 |
Msa1170340 | Msa1336100 | 0.800222 | 1.594890e-48 | -8.615850e-47 |
Msa1179190 | Msa1336100 | 0.830928 | 2.227244e-55 | -8.615850e-47 |
Msa1214960 | Msa1336100 | 0.807210 | 5.649089e-50 | -8.615850e-47 |
Msa1216600 | Msa1336100 | 0.801272 | 9.737240e-49 | -8.615850e-47 |
Msa1219780 | Msa1336100 | 0.819486 | 1.132601e-52 | -8.615850e-47 |
Msa1222030 | Msa1336100 | 0.805486 | 1.304495e-49 | -8.615850e-47 |
Msa0487100 | Msa1336100 | 0.840032 | 1.110284e-57 | -8.615850e-47 |
Msa0529360 | Msa1336100 | 0.819179 | 1.330761e-52 | -8.615850e-47 |
Msa0533510 | Msa1336100 | 0.816352 | 5.781396e-52 | -8.615850e-47 |
Msa0538520 | Msa1336100 | 0.800822 | 1.203547e-48 | -8.615850e-47 |
Msa0548760 | Msa1336100 | 0.805316 | 1.415737e-49 | -8.615850e-47 |
Msa0589720 | Msa1336100 | 0.813870 | 2.056295e-51 | -8.615850e-47 |
Msa0589730 | Msa1336100 | 0.807065 | 6.062450e-50 | -8.615850e-47 |
Msa0589740 | Msa1336100 | 0.830072 | 3.607235e-55 | -8.615850e-47 |
Msa0594320 | Msa1336100 | 0.802272 | 6.068879e-49 | -8.615850e-47 |
Msa0854380 | Msa1336100 | 0.805358 | 1.387378e-49 | -8.615850e-47 |
Msa0863840 | Msa1336100 | 0.803594 | 3.235284e-49 | -8.615850e-47 |
Msa0864160 | Msa1336100 | 0.800587 | 1.343918e-48 | -8.615850e-47 |
Msa0886370 | Msa1336100 | 0.811628 | 6.367205e-51 | -8.615850e-47 |
Msa0896920 | Msa1336100 | 0.823189 | 1.584013e-53 | -8.615850e-47 |
Msa0896950 | Msa1336100 | 0.816826 | 4.527524e-52 | -8.615850e-47 |
Msa0902340 | Msa1336100 | 0.825706 | 4.049268e-54 | -8.615850e-47 |
Msa0910830 | Msa1336100 | 0.802918 | 4.465231e-49 | -8.615850e-47 |
Msa0913550 | Msa1336100 | 0.803035 | 4.223385e-49 | -8.615850e-47 |
Msa0922500 | Msa1336100 | 0.800984 | 1.114927e-48 | -8.615850e-47 |
Msa0924490 | Msa1336100 | 0.812596 | 3.915178e-51 | -8.615850e-47 |
Msa0932930 | Msa1336100 | 0.836513 | 8.953692e-57 | -8.615850e-47 |
Msa0948460 | Msa1336100 | 0.804659 | 1.942757e-49 | -8.615850e-47 |
Msa0951060 | Msa1336100 | 0.804830 | 1.789511e-49 | -8.615850e-47 |
Msa0960090 | Msa1336100 | 0.800934 | 1.141494e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336100 | MtrunA17_Chr1g0208981 | 97.704 | 392 | 4 | 2 | 1 | 388 | 1 | 391 | 0.0 | 775 |
Msa1336100 | MtrunA17_Chr4g0035951 | 81.972 | 355 | 64 | 0 | 34 | 388 | 46 | 400 | 0.0 | 613 |
Msa1336100 | MtrunA17_Chr4g0028361 | 81.690 | 355 | 65 | 0 | 34 | 388 | 46 | 400 | 0.0 | 612 |
Msa1336100 | MtrunA17_Chr4g0035981 | 81.857 | 237 | 43 | 0 | 152 | 388 | 4 | 240 | 2.25e-146 | 414 |
Msa1336100 | MtrunA17_Chr7g0265821 | 55.932 | 354 | 151 | 4 | 39 | 388 | 6 | 358 | 2.21e-136 | 394 |
Msa1336100 | MtrunA17_Chr5g0429051 | 55.085 | 354 | 154 | 4 | 39 | 388 | 6 | 358 | 1.22e-134 | 389 |
Msa1336100 | MtrunA17_Chr5g0447091 | 55.271 | 351 | 153 | 3 | 41 | 388 | 8 | 357 | 6.41e-134 | 387 |
Msa1336100 | MtrunA17_Chr1g0179211 | 53.672 | 354 | 159 | 4 | 39 | 388 | 6 | 358 | 1.41e-129 | 376 |
Msa1336100 | MtrunA17_Chr5g0429031 | 57.561 | 205 | 86 | 1 | 38 | 241 | 46 | 250 | 4.28e-78 | 241 |
Msa1336100 | MtrunA17_Chr4g0035971 | 76.042 | 96 | 23 | 0 | 33 | 128 | 43 | 138 | 7.09e-44 | 149 |
Msa1336100 | MtrunA17_Chr5g0429021 | 50.758 | 132 | 61 | 3 | 260 | 388 | 1 | 131 | 5.72e-36 | 128 |
Msa1336100 | MtrunA17_Chr7g0265811 | 47.253 | 91 | 24 | 1 | 146 | 236 | 22 | 88 | 5.18e-20 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336100 | AT2G01140.1 | 84.399 | 391 | 58 | 1 | 1 | 388 | 1 | 391 | 0.0 | 677 |
Msa1336100 | AT4G38970.1 | 77.807 | 383 | 80 | 2 | 11 | 388 | 16 | 398 | 0.0 | 615 |
Msa1336100 | AT2G21330.1 | 74.872 | 390 | 92 | 2 | 5 | 388 | 10 | 399 | 0.0 | 603 |
Msa1336100 | AT2G21330.3 | 72.308 | 390 | 92 | 3 | 5 | 388 | 10 | 389 | 0.0 | 576 |
Msa1336100 | AT4G38970.2 | 72.727 | 308 | 72 | 3 | 11 | 306 | 16 | 323 | 1.24e-160 | 456 |
Msa1336100 | AT2G21330.2 | 72.819 | 298 | 75 | 2 | 5 | 296 | 10 | 307 | 1.35e-158 | 448 |
Msa1336100 | AT4G26530.1 | 56.250 | 352 | 149 | 4 | 41 | 388 | 8 | 358 | 2.40e-136 | 394 |
Msa1336100 | AT4G26530.3 | 56.250 | 352 | 149 | 4 | 41 | 388 | 8 | 358 | 2.40e-136 | 394 |
Msa1336100 | AT4G26530.2 | 56.250 | 352 | 149 | 4 | 41 | 388 | 8 | 358 | 2.40e-136 | 394 |
Msa1336100 | AT2G36460.1 | 55.650 | 354 | 152 | 4 | 39 | 388 | 6 | 358 | 3.25e-135 | 391 |
Msa1336100 | AT3G52930.1 | 54.802 | 354 | 155 | 4 | 39 | 388 | 6 | 358 | 3.70e-133 | 385 |
Msa1336100 | AT5G03690.2 | 55.085 | 354 | 155 | 3 | 39 | 388 | 6 | 359 | 5.47e-132 | 383 |
Msa1336100 | AT4G26520.1 | 54.802 | 354 | 155 | 4 | 39 | 388 | 6 | 358 | 1.30e-129 | 377 |
Msa1336100 | AT4G26520.3 | 55.172 | 348 | 152 | 3 | 39 | 383 | 6 | 352 | 1.44e-129 | 377 |
Msa1336100 | AT5G03690.1 | 55.301 | 349 | 152 | 3 | 44 | 388 | 45 | 393 | 5.54e-129 | 376 |
Msa1336100 | AT4G26520.2 | 54.986 | 351 | 153 | 4 | 42 | 388 | 6 | 355 | 1.41e-128 | 374 |
Msa1336100 | AT4G26520.4 | 54.986 | 351 | 153 | 4 | 42 | 388 | 6 | 355 | 1.41e-128 | 374 |
Msa1336100 | AT2G36460.3 | 55.805 | 267 | 113 | 4 | 126 | 388 | 2 | 267 | 7.22e-99 | 295 |
Msa1336100 | AT2G36460.2 | 55.805 | 267 | 113 | 4 | 126 | 388 | 2 | 267 | 7.22e-99 | 295 |
Msa1336100 | AT5G03690.3 | 54.682 | 267 | 117 | 3 | 126 | 388 | 1 | 267 | 2.86e-94 | 283 |
Msa1336100 | AT5G03690.4 | 54.682 | 267 | 117 | 3 | 126 | 388 | 1 | 267 | 2.86e-94 | 283 |
Find 139 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATATTTGGCAATGGTTTC+TGG | 0.143267 | tig0000800:-11678 | None:intergenic |
TCTTGGTGTAATAGAGGTTT+TGG | 0.189042 | tig0000800:+12681 | Msa1336100:three_prime_UTR |
AAGCATGGTTAGTGTATATT+TGG | 0.209752 | tig0000800:-11691 | None:intergenic |
CTTGACGAACATTTCCTTCT+TGG | 0.217385 | tig0000800:-12484 | None:intergenic |
GGCTGTTAAGGAAGCGGCCT+GGG | 0.275057 | tig0000800:+10931 | Msa1336100:CDS |
ACTTCCAGTGTCCTTTCAAT+TGG | 0.291399 | tig0000800:-11534 | None:intergenic |
TCCCCATCAAGAAGAATTTC+AGG | 0.298792 | tig0000800:-11507 | None:intergenic |
TGAGCTGCTTCAACATTCTC+AGG | 0.308014 | tig0000800:-12381 | None:intergenic |
AGGTTAATCGCCAGGCTTAC+AGG | 0.321017 | tig0000800:+10150 | Msa1336100:CDS |
AGAATTTCAGGCTCAACTAT+TGG | 0.323620 | tig0000800:-11495 | None:intergenic |
TCCTTCTGCCTTGGCTGTTA+AGG | 0.340996 | tig0000800:+10919 | Msa1336100:CDS |
CGTGCCATGGGTTGGGACTT+TGG | 0.343951 | tig0000800:-12299 | None:intergenic |
GAGGTGTCTCTTGTGGCTTT+TGG | 0.347388 | tig0000800:+12527 | Msa1336100:three_prime_UTR |
CGGTAACGGTACCATGATTC+CGG | 0.350799 | tig0000800:-11739 | None:intergenic |
TAGGGTTTGGTTCCTCTACC+AGG | 0.359285 | tig0000800:+10684 | Msa1336100:intron |
AGCAGCTCAAAAGTCTCTTT+TGG | 0.359867 | tig0000800:+12395 | Msa1336100:CDS |
CTTCCAGTGTCCTTTCAATT+GGG | 0.368440 | tig0000800:-11533 | None:intergenic |
GGGAAGCGTTTGGCATCAAT+TGG | 0.374360 | tig0000800:+10113 | Msa1336100:CDS |
TGAGCAAAATTCCCTCAAAA+AGG | 0.378619 | tig0000800:-11608 | None:intergenic |
TCCAAGTGGTCCTTCTGCCT+TGG | 0.383226 | tig0000800:+10910 | Msa1336100:CDS |
CTTTCTTTGTGCTCAGCACC+AGG | 0.384320 | tig0000800:-11648 | None:intergenic |
GAGCCTGAAATTCTTCTTGA+TGG | 0.387798 | tig0000800:+11504 | Msa1336100:CDS |
TAGCAATCATGATATGTAAC+TGG | 0.393007 | tig0000800:-12782 | None:intergenic |
AAAGAGAAAGAGAAAGAGAA+AGG | 0.395413 | tig0000800:-9462 | None:intergenic |
TCTTAAGCACGGTGTTCTGC+AGG | 0.420043 | tig0000800:-12344 | None:intergenic |
CATCAGTTGTCGATTGGTAA+AGG | 0.422192 | tig0000800:-10238 | None:intergenic |
ATCAGTTGTCGATTGGTAAA+GGG | 0.422744 | tig0000800:-10237 | None:intergenic |
GTGCCAAGGTTTGGATGGAT+TGG | 0.426272 | tig0000800:+10725 | Msa1336100:CDS |
TCTCGTTCACTCCGTCTAAA+CGG | 0.427424 | tig0000800:-9419 | None:intergenic |
TGAATCTTGGTGCCAAGGTT+TGG | 0.428814 | tig0000800:+10716 | Msa1336100:CDS |
TATTAAGTCTCCCAACATAA+GGG | 0.432202 | tig0000800:-12745 | None:intergenic |
TGCAACCGCTGGGAAGCGTT+TGG | 0.446908 | tig0000800:+10103 | Msa1336100:CDS |
CTGAGCCAAGGAGTTAGCTT+TGG | 0.448199 | tig0000800:-12424 | None:intergenic |
AGCCTGAAATTCTTCTTGAT+GGG | 0.449367 | tig0000800:+11505 | Msa1336100:CDS |
GTCAGGTGGACAATCAGAAA+TGG | 0.452090 | tig0000800:+12248 | Msa1336100:CDS |
ACCTTGTCAACTTTGATGCC+AGG | 0.456026 | tig0000800:-10302 | None:intergenic |
TGGCTGTTAAGGAAGCGGCC+TGG | 0.457338 | tig0000800:+10930 | Msa1336100:CDS |
ACCATGATTCCGGGGACTGC+AGG | 0.458254 | tig0000800:-11729 | None:intergenic |
AAAGACACGTGCCATGGGTT+GGG | 0.469437 | tig0000800:-12306 | None:intergenic |
GTATTAAGTCTCCCAACATA+AGG | 0.470893 | tig0000800:-12746 | None:intergenic |
AAGAGAAAGAGAAAGAGAAA+GGG | 0.473561 | tig0000800:-9461 | None:intergenic |
GCGTTTGGCATCAATTGGAT+TGG | 0.476960 | tig0000800:+10118 | Msa1336100:CDS |
CCAGTGTCCTTTCAATTGGG+TGG | 0.480272 | tig0000800:-11530 | None:intergenic |
GACTTCGGACCATACCTTCT+CGG | 0.480537 | tig0000800:-11559 | None:intergenic |
CTGGTGCTGAGCACAAAGAA+AGG | 0.481067 | tig0000800:+11649 | Msa1336100:CDS |
AAGGATTGTTAGCGATCCAT+TGG | 0.481219 | tig0000800:-9628 | None:intergenic |
GCAAAAGTTGCCTGTAAGCC+TGG | 0.485518 | tig0000800:-10160 | None:intergenic |
TTGCTCACCACACCCGGTCT+AGG | 0.485709 | tig0000800:+10179 | Msa1336100:CDS |
GATGAATCAAATGCAACCGC+TGG | 0.489723 | tig0000800:+10092 | Msa1336100:CDS |
TCCTGCAGTCCCCGGAATCA+TGG | 0.494010 | tig0000800:+11728 | Msa1336100:CDS |
CAGGGTCAAACAATGAATCT+TGG | 0.494941 | tig0000800:+10703 | Msa1336100:CDS |
TGGAAGTTGCCGAGAAGGTA+TGG | 0.496479 | tig0000800:+11550 | Msa1336100:CDS |
TCTGTTGCATCTCGTGGTCG+TGG | 0.498134 | tig0000800:+10056 | Msa1336100:CDS |
TCATTGTTTGACCCTGGTAG+AGG | 0.501439 | tig0000800:-10696 | None:intergenic |
CTTTACCAATCGACAACTGA+TGG | 0.504053 | tig0000800:+10239 | Msa1336100:CDS |
AACAATGAATCTTGGTGCCA+AGG | 0.506764 | tig0000800:+10711 | Msa1336100:CDS |
AGAAGTTGAGGTGTCTCTTG+TGG | 0.510767 | tig0000800:+12520 | Msa1336100:exon |
AGAGATGTATTCACCTAGAC+CGG | 0.511873 | tig0000800:-10192 | None:intergenic |
TCTTCCCATCAGTTGTCGAT+TGG | 0.513936 | tig0000800:-10244 | None:intergenic |
TATGTTGGGAGACTTAATAC+TGG | 0.515330 | tig0000800:+12749 | Msa1336100:three_prime_UTR |
GAGACACCTCAACTTCTAGT+AGG | 0.519596 | tig0000800:-12514 | None:intergenic |
GGTAACGGTACCATGATTCC+GGG | 0.519907 | tig0000800:-11738 | None:intergenic |
GCTAACTCCTTGGCTCAGCT+TGG | 0.521549 | tig0000800:+12429 | Msa1336100:CDS |
ACGATATGCTGCTATCTCTC+AGG | 0.522411 | tig0000800:+10961 | Msa1336100:CDS |
CCGTGCCAAAGCTAACTCCT+TGG | 0.523174 | tig0000800:+12419 | Msa1336100:CDS |
TCTTGGTGCCAAGGTTTGGA+TGG | 0.523779 | tig0000800:+10720 | Msa1336100:CDS |
AACTGATGGGAAGAAGTTTG+TGG | 0.525618 | tig0000800:+10253 | Msa1336100:CDS |
TGCCTTGGCTGTTAAGGAAG+CGG | 0.526397 | tig0000800:+10925 | Msa1336100:CDS |
GGTTAGTGTATATTTGGCAA+TGG | 0.529594 | tig0000800:-11685 | None:intergenic |
CAATACTGAGGTTAATCGCC+AGG | 0.530082 | tig0000800:+10142 | Msa1336100:CDS |
ATTAAGTCTCCCAACATAAG+GGG | 0.532723 | tig0000800:-12744 | None:intergenic |
AGCATATCGTGCAAGTCCCC+AGG | 0.533205 | tig0000800:-10948 | None:intergenic |
CGAAAATGAAGAAGCCAAGA+AGG | 0.534786 | tig0000800:+12470 | Msa1336100:CDS |
GAGCTGCTTCAACATTCTCA+GGG | 0.535757 | tig0000800:-12380 | None:intergenic |
AGGATTGTTAGCGATCCATT+GGG | 0.536120 | tig0000800:-9627 | None:intergenic |
TGGTGCTGAGCACAAAGAAA+GGG | 0.536459 | tig0000800:+11650 | Msa1336100:CDS |
GCACCAGGTGTAACCATGCT+AGG | 0.538660 | tig0000800:-11633 | None:intergenic |
GAAAGACACGTGCCATGGGT+TGG | 0.541533 | tig0000800:-12307 | None:intergenic |
GGTCTAGGTGAATACATCTC+TGG | 0.541967 | tig0000800:+10194 | Msa1336100:CDS |
GCCTGAAATTCTTCTTGATG+GGG | 0.544178 | tig0000800:+11506 | Msa1336100:CDS |
GCCAAGGCAGAAGGACCACT+TGG | 0.544206 | tig0000800:-10911 | None:intergenic |
AGAGTTCCTCCTGCAGTCCC+CGG | 0.546179 | tig0000800:+11720 | Msa1336100:CDS |
GACACTGGAAGTTGCCGAGA+AGG | 0.547027 | tig0000800:+11545 | Msa1336100:CDS |
GGCCGCTTCCTTAACAGCCA+AGG | 0.548119 | tig0000800:-10927 | None:intergenic |
CGTGAGGAGAACATTGTACC+TGG | 0.549941 | tig0000800:+10284 | Msa1336100:CDS |
TGTACTACCAACCGTTTAGA+CGG | 0.552475 | tig0000800:+9408 | Msa1336100:five_prime_UTR |
ATGGGGACCACCCAATTGAA+AGG | 0.554643 | tig0000800:+11523 | Msa1336100:CDS |
ACAAAACAAACACACACACG+AGG | 0.556224 | tig0000800:+9523 | Msa1336100:five_prime_UTR |
CCTTTCTCTTCTCGTCGTGG+TGG | 0.562624 | tig0000800:+9647 | Msa1336100:CDS |
CCACCACGACGAGAAGAGAA+AGG | 0.565487 | tig0000800:-9647 | None:intergenic |
AGGGTTTGGTTCCTCTACCA+GGG | 0.568089 | tig0000800:+10685 | Msa1336100:intron |
GTATTCACCTAGACCGGGTG+TGG | 0.569507 | tig0000800:-10186 | None:intergenic |
GTATCTTCCAAGCTGAGCCA+AGG | 0.572003 | tig0000800:-12436 | None:intergenic |
AGCGGTTTGAACAAGTTCAT+CGG | 0.573532 | tig0000800:-9720 | None:intergenic |
TCCTTAACAGCCAAGGCAGA+AGG | 0.573737 | tig0000800:-10920 | None:intergenic |
GAGTAAGAAGAAGCGCGGAT+CGG | 0.575235 | tig0000800:-9698 | None:intergenic |
TCAACTCTCTCTCTTCCCAA+TGG | 0.579450 | tig0000800:+9612 | Msa1336100:CDS |
TGTGTTCCATTGCAGGACAA+CGG | 0.583080 | tig0000800:+11465 | Msa1336100:intron |
TATGAGAAAGACACGTGCCA+TGG | 0.584679 | tig0000800:-12312 | None:intergenic |
AGGAACTCTTCTGTTAAGCA+TGG | 0.585388 | tig0000800:-11706 | None:intergenic |
ATGAGAAAGACACGTGCCAT+GGG | 0.586561 | tig0000800:-12311 | None:intergenic |
TAGAAATCTGTTGCATCTCG+TGG | 0.588123 | tig0000800:+10050 | Msa1336100:intron |
CAGGCTCAACTATTGGAACA+AGG | 0.589394 | tig0000800:-11488 | None:intergenic |
CAAAACAAACACACACACGA+GGG | 0.590959 | tig0000800:+9524 | Msa1336100:five_prime_UTR |
CAAGATTCATTGTTTGACCC+TGG | 0.591933 | tig0000800:-10702 | None:intergenic |
AAGCCAATCCATCCAAACCT+TGG | 0.594762 | tig0000800:-10728 | None:intergenic |
ATGAATCAAATGCAACCGCT+GGG | 0.595807 | tig0000800:+10093 | Msa1336100:CDS |
CTTAAGCACGGTGTTCTGCA+GGG | 0.596190 | tig0000800:-12343 | None:intergenic |
ACTATACCTACTAGAAGTTG+AGG | 0.596744 | tig0000800:+12508 | Msa1336100:exon |
GCTGTTAAGGAAGCGGCCTG+GGG | 0.602168 | tig0000800:+10932 | Msa1336100:CDS |
GTTCACTCCGTCTAAACGGT+TGG | 0.607526 | tig0000800:-9415 | None:intergenic |
AAGCCTAGCATGGTTACACC+TGG | 0.607681 | tig0000800:+11630 | Msa1336100:CDS |
CCAAGGAGTTAGCTTTGGCA+CGG | 0.608922 | tig0000800:-12419 | None:intergenic |
ACCGTGCTTAAGACATGGCA+AGG | 0.609667 | tig0000800:+12354 | Msa1336100:CDS |
ACCTTGCCATGTCTTAAGCA+CGG | 0.614625 | tig0000800:-12355 | None:intergenic |
CGGAAGAGAGACGTTGCGAG+TGG | 0.615100 | tig0000800:-9678 | None:intergenic |
TTTACCAATCGACAACTGAT+GGG | 0.617461 | tig0000800:+10240 | Msa1336100:CDS |
AATCCTTTCTCTTCTCGTCG+TGG | 0.618650 | tig0000800:+9644 | Msa1336100:CDS |
CCACCCAATTGAAAGGACAC+TGG | 0.623497 | tig0000800:+11530 | Msa1336100:CDS |
CAGGTACAATGTTCTCCTCA+CGG | 0.624895 | tig0000800:-10283 | None:intergenic |
CTTGGAAGATACTCTGCCGA+GGG | 0.626594 | tig0000800:+12447 | Msa1336100:CDS |
CAAGAAGGAAATGTTCGTCA+AGG | 0.630500 | tig0000800:+12485 | Msa1336100:CDS |
ATGATTCCGGGGACTGCAGG+AGG | 0.636274 | tig0000800:-11726 | None:intergenic |
GCTTGGAAGATACTCTGCCG+AGG | 0.639009 | tig0000800:+12446 | Msa1336100:CDS |
TGAACCAAAGTCCCAACCCA+TGG | 0.639076 | tig0000800:+12295 | Msa1336100:CDS |
GGCCAAATAAAAGAAGACTT+CGG | 0.642870 | tig0000800:-11574 | None:intergenic |
ACCTGGCATCAAAGTTGACA+AGG | 0.646079 | tig0000800:+10301 | Msa1336100:CDS |
TCTGCTGAATACTACAAGCA+AGG | 0.650843 | tig0000800:+10756 | Msa1336100:CDS |
ACCGTTGTCAGCATTCCAAG+TGG | 0.664978 | tig0000800:+10896 | Msa1336100:CDS |
AATTGGATTGGACAATACTG+AGG | 0.667179 | tig0000800:+10130 | Msa1336100:CDS |
TTAAGTCTCCCAACATAAGG+GGG | 0.668803 | tig0000800:-12743 | None:intergenic |
ACCACTTGGAATGCTGACAA+CGG | 0.673812 | tig0000800:-10897 | None:intergenic |
GAGATGTATTCACCTAGACC+GGG | 0.674915 | tig0000800:-10191 | None:intergenic |
AAGGTGCTCGATTTGCCAAG+TGG | 0.677907 | tig0000800:+10775 | Msa1336100:CDS |
AGAACACCGTGCTTAAGACA+TGG | 0.678756 | tig0000800:+12349 | Msa1336100:CDS |
GTAACGGTACCATGATTCCG+GGG | 0.691074 | tig0000800:-11737 | None:intergenic |
GTTTGTGGATTGTCTCCGTG+AGG | 0.692026 | tig0000800:+10268 | Msa1336100:CDS |
CATCGGAGTAAGAAGAAGCG+CGG | 0.699829 | tig0000800:-9703 | None:intergenic |
TGATGCCAAACGCTTCCCAG+CGG | 0.710626 | tig0000800:-10108 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTAAAAGTAATGAAAAA+GGG | - | tig0000800:9781-9800 | None:intergenic | 10.0% |
!! | GAATTTAAAAGTAATGAAAA+AGG | - | tig0000800:9782-9801 | None:intergenic | 15.0% |
!!! | TTCTTATATTGATCTTTTTT+TGG | + | tig0000800:11434-11453 | Msa1336100:intron | 15.0% |
!!! | ATGATTGCTATATATTTTTT+TGG | + | tig0000800:12795-12814 | Msa1336100:three_prime_UTR | 15.0% |
!!! | TGATTGCTATATATTTTTTT+GGG | + | tig0000800:12796-12815 | Msa1336100:three_prime_UTR | 15.0% |
!! | AATAAATGTGATCGAAATAA+AGG | - | tig0000800:9753-9772 | None:intergenic | 20.0% |
!!! | AAAGTTTTAATCTTTTCTGT+TGG | + | tig0000800:9809-9828 | Msa1336100:intron | 20.0% |
!!! | AAGTTTTAATCTTTTCTGTT+GGG | + | tig0000800:9810-9829 | Msa1336100:intron | 20.0% |
!!! | TTCCAATTAGAATGTTTTAT+CGG | - | tig0000800:9927-9946 | None:intergenic | 20.0% |
!!! | TTTTATCCTTTTTTCTTTGT+AGG | + | tig0000800:10665-10684 | Msa1336100:intron | 20.0% |
!!! | TTTATCCTTTTTTCTTTGTA+GGG | + | tig0000800:10666-10685 | Msa1336100:intron | 20.0% |
!! | ACATTGAAATTGAATTGAAA+TGG | + | tig0000800:10846-10865 | Msa1336100:intron | 20.0% |
!!! | ATATGTAATGAACCTTTTAT+TGG | + | tig0000800:11209-11228 | Msa1336100:intron | 20.0% |
!! | TTATGTAAATCAGAAACTAA+AGG | - | tig0000800:11772-11791 | None:intergenic | 20.0% |
!!! | AGAAAAAAAAAGACTTTTCT+TGG | + | tig0000800:12664-12683 | Msa1336100:three_prime_UTR | 20.0% |
!! | AGAATGTTTTATCGGAAAAT+TGG | - | tig0000800:9919-9938 | None:intergenic | 25.0% |
! | TTCCGATAAAACATTCTAAT+TGG | + | tig0000800:9922-9941 | Msa1336100:intron | 25.0% |
! | TTGAAATTGAATTGAAATGG+TGG | + | tig0000800:10849-10868 | Msa1336100:intron | 25.0% |
! | TTTCAACAAACAAACATTCA+TGG | - | tig0000800:10999-11018 | None:intergenic | 25.0% |
!! | TGTAAGTTGAAAATGTGTAT+AGG | + | tig0000800:11149-11168 | Msa1336100:intron | 25.0% |
! | TATAGGTTGTGAAATTTGAT+TGG | + | tig0000800:11166-11185 | Msa1336100:intron | 25.0% |
! | TTTAGTATTTATTGCAAGCA+AGG | + | tig0000800:11269-11288 | Msa1336100:intron | 25.0% |
! | CATCATTAGATTAATCTGAT+TGG | + | tig0000800:11328-11347 | Msa1336100:intron | 25.0% |
! | AAAGATCAATATAAGAACAC+TGG | - | tig0000800:11431-11450 | None:intergenic | 25.0% |
! | ACGTATAGTTAACTTTGATA+TGG | - | tig0000800:11847-11866 | None:intergenic | 25.0% |
! | TGTCACATATGTATATATCA+AGG | - | tig0000800:11974-11993 | None:intergenic | 25.0% |
! | TGTTTAAAGATTCTGAATTC+AGG | - | tig0000800:12040-12059 | None:intergenic | 25.0% |
!! | CTCAATATCAGTGAATTTTA+AGG | + | tig0000800:12573-12592 | Msa1336100:three_prime_UTR | 25.0% |
!!! | GAAAGGGTTTTGTTTTGTTT+TGG | - | tig0000800:9448-9467 | None:intergenic | 30.0% |
AAGAGAAAGAGAAAGAGAAA+GGG | - | tig0000800:9464-9483 | None:intergenic | 30.0% | |
AAAGAGAAAGAGAAAGAGAA+AGG | - | tig0000800:9465-9484 | None:intergenic | 30.0% | |
!!! | TTGTTTTGTTTGACAAACGT+TGG | - | tig0000800:9512-9531 | None:intergenic | 30.0% |
ATTGCGTTCGTTAGTAATAT+AGG | + | tig0000800:10331-10350 | Msa1336100:intron | 30.0% | |
TCGTTAGTAATATAGGATCA+AGG | + | tig0000800:10338-10357 | Msa1336100:intron | 30.0% | |
!! | AGTCATAACTTGTTGTGATT+TGG | + | tig0000800:10541-10560 | Msa1336100:intron | 30.0% |
!!! | GGTTTGCTTTTGAAATATAC+AGG | + | tig0000800:10870-10889 | Msa1336100:intron | 30.0% |
AATAACTGGTGTACTTTCAT+GGG | + | tig0000800:11034-11053 | Msa1336100:intron | 30.0% | |
! | TACTTTCATGGGTTATTCTT+TGG | + | tig0000800:11045-11064 | Msa1336100:intron | 30.0% |
CAATGTGCTTAAATATCTAC+TGG | - | tig0000800:11131-11150 | None:intergenic | 30.0% | |
! | GTAATGAACCTTTTATTGGT+TGG | + | tig0000800:11213-11232 | Msa1336100:intron | 30.0% |
TAATGATGTTACAAAGCAAG+AGG | - | tig0000800:11316-11335 | None:intergenic | 30.0% | |
AAGCATGGTTAGTGTATATT+TGG | - | tig0000800:11694-11713 | None:intergenic | 30.0% | |
TAAATCAGAAACTAAAGGTG+AGG | - | tig0000800:11767-11786 | None:intergenic | 30.0% | |
CACAACAGAATATATGCAAT+TGG | - | tig0000800:12072-12091 | None:intergenic | 30.0% | |
TTGGGATACCTAAAAATCAA+AGG | + | tig0000800:12700-12719 | Msa1336100:three_prime_UTR | 30.0% | |
TGGGATACCTAAAAATCAAA+GGG | + | tig0000800:12701-12720 | Msa1336100:three_prime_UTR | 30.0% | |
!! | GTGAATTCCCTTTGATTTTT+AGG | - | tig0000800:12711-12730 | None:intergenic | 30.0% |
TATTAAGTCTCCCAACATAA+GGG | - | tig0000800:12748-12767 | None:intergenic | 30.0% | |
TAGCAATCATGATATGTAAC+TGG | - | tig0000800:12785-12804 | None:intergenic | 30.0% | |
! | AATTTTCATCACTTCACCCA+TGG | + | tig0000800:9577-9596 | Msa1336100:exon | 35.0% |
CGAAATAAAGGTAGTTACAG+CGG | - | tig0000800:9741-9760 | None:intergenic | 35.0% | |
! | AATTGGATTGGACAATACTG+AGG | + | tig0000800:10130-10149 | Msa1336100:CDS | 35.0% |
! | ATCAGTTGTCGATTGGTAAA+GGG | - | tig0000800:10240-10259 | None:intergenic | 35.0% |
TTTACCAATCGACAACTGAT+GGG | + | tig0000800:10240-10259 | Msa1336100:CDS | 35.0% | |
TTTCCATAAGCTCTTCAAGA+TGG | - | tig0000800:10504-10523 | None:intergenic | 35.0% | |
CCAAACCCTACAAAGAAAAA+AGG | - | tig0000800:10674-10693 | None:intergenic | 35.0% | |
!!! | CCTTTTTTCTTTGTAGGGTT+TGG | + | tig0000800:10671-10690 | Msa1336100:intron | 35.0% |
AACAAACATTCATGGAATGC+AGG | - | tig0000800:10991-11010 | None:intergenic | 35.0% | |
! | GTTTGTTGAAATAAGCTCGT+CGG | + | tig0000800:11008-11027 | Msa1336100:intron | 35.0% |
GAATAACTGGTGTACTTTCA+TGG | + | tig0000800:11033-11052 | Msa1336100:intron | 35.0% | |
!! | CATTTGCTGTGTGTTTAGTT+TGG | + | tig0000800:11092-11111 | Msa1336100:intron | 35.0% |
GTCAAGAACCAACCAATAAA+AGG | - | tig0000800:11224-11243 | None:intergenic | 35.0% | |
AGAATTTCAGGCTCAACTAT+TGG | - | tig0000800:11498-11517 | None:intergenic | 35.0% | |
AGCCTGAAATTCTTCTTGAT+GGG | + | tig0000800:11505-11524 | Msa1336100:CDS | 35.0% | |
! | GTCCGAAGTCTTCTTTTATT+TGG | + | tig0000800:11572-11591 | Msa1336100:CDS | 35.0% |
GGCCAAATAAAAGAAGACTT+CGG | - | tig0000800:11577-11596 | None:intergenic | 35.0% | |
CTCAAAAAGGACATTGTTCT+GGG | - | tig0000800:11598-11617 | None:intergenic | 35.0% | |
! | CAGAACAATGTCCTTTTTGA+GGG | + | tig0000800:11597-11616 | Msa1336100:CDS | 35.0% |
TGAGCAAAATTCCCTCAAAA+AGG | - | tig0000800:11611-11630 | None:intergenic | 35.0% | |
GTATATTTGGCAATGGTTTC+TGG | - | tig0000800:11681-11700 | None:intergenic | 35.0% | |
GGTTAGTGTATATTTGGCAA+TGG | - | tig0000800:11688-11707 | None:intergenic | 35.0% | |
GTTAACTATACGTGTGACTT+CGG | + | tig0000800:11854-11873 | Msa1336100:intron | 35.0% | |
TGTGACTTCGGAAATAACTA+CGG | + | tig0000800:11866-11885 | Msa1336100:intron | 35.0% | |
GTTCTTGATCGTAGGTAATT+TGG | + | tig0000800:12091-12110 | Msa1336100:intron | 35.0% | |
TTGATCGTAGGTAATTTGGA+TGG | + | tig0000800:12095-12114 | Msa1336100:intron | 35.0% | |
! | TCGTATTCTCAGTTTTTGTC+AGG | + | tig0000800:12231-12250 | Msa1336100:intron | 35.0% |
! | TATTCTCAGTTTTTGTCAGG+TGG | + | tig0000800:12234-12253 | Msa1336100:intron | 35.0% |
ACTATACCTACTAGAAGTTG+AGG | + | tig0000800:12508-12527 | Msa1336100:exon | 35.0% | |
!! | GACTTTTCTTGGTGTAATAG+AGG | + | tig0000800:12675-12694 | Msa1336100:three_prime_UTR | 35.0% |
!! | TCTTGGTGTAATAGAGGTTT+TGG | + | tig0000800:12681-12700 | Msa1336100:three_prime_UTR | 35.0% |
!! | CTTGGTGTAATAGAGGTTTT+GGG | + | tig0000800:12682-12701 | Msa1336100:three_prime_UTR | 35.0% |
ATTAAGTCTCCCAACATAAG+GGG | - | tig0000800:12747-12766 | None:intergenic | 35.0% | |
GTATTAAGTCTCCCAACATA+AGG | - | tig0000800:12749-12768 | None:intergenic | 35.0% | |
TATGTTGGGAGACTTAATAC+TGG | + | tig0000800:12749-12768 | Msa1336100:three_prime_UTR | 35.0% | |
TGTACTACCAACCGTTTAGA+CGG | + | tig0000800:9408-9427 | Msa1336100:five_prime_UTR | 40.0% | |
ACAAAACAAACACACACACG+AGG | + | tig0000800:9523-9542 | Msa1336100:five_prime_UTR | 40.0% | |
CAAAACAAACACACACACGA+GGG | + | tig0000800:9524-9543 | Msa1336100:five_prime_UTR | 40.0% | |
! | TTGAGTTTTGCAGAAGCCAT+GGG | - | tig0000800:9596-9615 | None:intergenic | 40.0% |
AGGATTGTTAGCGATCCATT+GGG | - | tig0000800:9630-9649 | None:intergenic | 40.0% | |
AAGGATTGTTAGCGATCCAT+TGG | - | tig0000800:9631-9650 | None:intergenic | 40.0% | |
AGCGGTTTGAACAAGTTCAT+CGG | - | tig0000800:9723-9742 | None:intergenic | 40.0% | |
TAGAAATCTGTTGCATCTCG+TGG | + | tig0000800:10050-10069 | Msa1336100:intron | 40.0% | |
ATGAATCAAATGCAACCGCT+GGG | + | tig0000800:10093-10112 | Msa1336100:CDS | 40.0% | |
AGAGATGTATTCACCTAGAC+CGG | - | tig0000800:10195-10214 | None:intergenic | 40.0% | |
! | CATCAGTTGTCGATTGGTAA+AGG | - | tig0000800:10241-10260 | None:intergenic | 40.0% |
CTTTACCAATCGACAACTGA+TGG | + | tig0000800:10239-10258 | Msa1336100:CDS | 40.0% | |
AACTGATGGGAAGAAGTTTG+TGG | + | tig0000800:10253-10272 | Msa1336100:CDS | 40.0% | |
TATAGGATCAAGGCTCTGTT+TGG | + | tig0000800:10348-10367 | Msa1336100:intron | 40.0% | |
AAGCCATCTTGAAGAGCTTA+TGG | + | tig0000800:10498-10517 | Msa1336100:intron | 40.0% | |
TCTAACAAGCCAATCCAAAC+AGG | + | tig0000800:10579-10598 | Msa1336100:intron | 40.0% | |
! | GTTGGTTGATCATAACTTGC+TGG | + | tig0000800:10633-10652 | Msa1336100:intron | 40.0% |
CAAGATTCATTGTTTGACCC+TGG | - | tig0000800:10705-10724 | None:intergenic | 40.0% | |
CAGGGTCAAACAATGAATCT+TGG | + | tig0000800:10703-10722 | Msa1336100:CDS | 40.0% | |
!! | AACAATGAATCTTGGTGCCA+AGG | + | tig0000800:10711-10730 | Msa1336100:CDS | 40.0% |
TCTGCTGAATACTACAAGCA+AGG | + | tig0000800:10756-10775 | Msa1336100:CDS | 40.0% | |
ACCAAGAATAGCTTACCACT+TGG | - | tig0000800:10793-10812 | None:intergenic | 40.0% | |
GAAAGAATACCCCTGTAAGA+CGG | - | tig0000800:11073-11092 | None:intergenic | 40.0% | |
GAGCCTGAAATTCTTCTTGA+TGG | + | tig0000800:11504-11523 | Msa1336100:CDS | 40.0% | |
GCCTGAAATTCTTCTTGATG+GGG | + | tig0000800:11506-11525 | Msa1336100:CDS | 40.0% | |
TCCCCATCAAGAAGAATTTC+AGG | - | tig0000800:11510-11529 | None:intergenic | 40.0% | |
CTTCCAGTGTCCTTTCAATT+GGG | - | tig0000800:11536-11555 | None:intergenic | 40.0% | |
ACTTCCAGTGTCCTTTCAAT+TGG | - | tig0000800:11537-11556 | None:intergenic | 40.0% | |
CCTCAAAAAGGACATTGTTC+TGG | - | tig0000800:11599-11618 | None:intergenic | 40.0% | |
! | CCAGAACAATGTCCTTTTTG+AGG | + | tig0000800:11596-11615 | Msa1336100:CDS | 40.0% |
! | AATTTTGCTCAAGCCTAGCA+TGG | + | tig0000800:11620-11639 | Msa1336100:CDS | 40.0% |
AGGAACTCTTCTGTTAAGCA+TGG | - | tig0000800:11709-11728 | None:intergenic | 40.0% | |
TCTGTTGTGTTCTTGATCGT+AGG | + | tig0000800:12083-12102 | Msa1336100:intron | 40.0% | |
! | AGCAGCTCAAAAGTCTCTTT+TGG | + | tig0000800:12395-12414 | Msa1336100:CDS | 40.0% |
CGAAAATGAAGAAGCCAAGA+AGG | + | tig0000800:12470-12489 | Msa1336100:CDS | 40.0% | |
CTTGACGAACATTTCCTTCT+TGG | - | tig0000800:12487-12506 | None:intergenic | 40.0% | |
CAAGAAGGAAATGTTCGTCA+AGG | + | tig0000800:12485-12504 | Msa1336100:CDS | 40.0% | |
TTAAGTCTCCCAACATAAGG+GGG | - | tig0000800:12746-12765 | None:intergenic | 40.0% | |
TCTCGTTCACTCCGTCTAAA+CGG | - | tig0000800:9422-9441 | None:intergenic | 45.0% | |
! | GTTGAGTTTTGCAGAAGCCA+TGG | - | tig0000800:9597-9616 | None:intergenic | 45.0% |
TCAACTCTCTCTCTTCCCAA+TGG | + | tig0000800:9612-9631 | Msa1336100:CDS | 45.0% | |
AATCCTTTCTCTTCTCGTCG+TGG | + | tig0000800:9644-9663 | Msa1336100:CDS | 45.0% | |
GATGAATCAAATGCAACCGC+TGG | + | tig0000800:10092-10111 | Msa1336100:CDS | 45.0% | |
GCGTTTGGCATCAATTGGAT+TGG | + | tig0000800:10118-10137 | Msa1336100:CDS | 45.0% | |
CAATACTGAGGTTAATCGCC+AGG | + | tig0000800:10142-10161 | Msa1336100:CDS | 45.0% | |
GAGATGTATTCACCTAGACC+GGG | - | tig0000800:10194-10213 | None:intergenic | 45.0% | |
GGTCTAGGTGAATACATCTC+TGG | + | tig0000800:10194-10213 | Msa1336100:CDS | 45.0% | |
TCTTCCCATCAGTTGTCGAT+TGG | - | tig0000800:10247-10266 | None:intergenic | 45.0% | |
CAGGTACAATGTTCTCCTCA+CGG | - | tig0000800:10286-10305 | None:intergenic | 45.0% | |
ACCTGGCATCAAAGTTGACA+AGG | + | tig0000800:10301-10320 | Msa1336100:CDS | 45.0% | |
ACCTTGTCAACTTTGATGCC+AGG | - | tig0000800:10305-10324 | None:intergenic | 45.0% | |
GTCTTAGAGCCTGTTTGGAT+TGG | - | tig0000800:10591-10610 | None:intergenic | 45.0% | |
TCACAGTCTTAGAGCCTGTT+TGG | - | tig0000800:10596-10615 | None:intergenic | 45.0% | |
!! | CAGGCTCTAAGACTGTGATT+TGG | + | tig0000800:10598-10617 | Msa1336100:intron | 45.0% |
!! | AGACTGTGATTTGGTCTCAG+TGG | + | tig0000800:10607-10626 | Msa1336100:intron | 45.0% |
!! | TGTGATTTGGTCTCAGTGGT+TGG | + | tig0000800:10611-10630 | Msa1336100:intron | 45.0% |
ATTTGGTCTCAGTGGTTGGT+TGG | + | tig0000800:10615-10634 | Msa1336100:intron | 45.0% | |
TCATTGTTTGACCCTGGTAG+AGG | - | tig0000800:10699-10718 | None:intergenic | 45.0% | |
!! | TGAATCTTGGTGCCAAGGTT+TGG | + | tig0000800:10716-10735 | Msa1336100:CDS | 45.0% |
AAGCCAATCCATCCAAACCT+TGG | - | tig0000800:10731-10750 | None:intergenic | 45.0% | |
GCCAAGTGGTAAGCTATTCT+TGG | + | tig0000800:10789-10808 | Msa1336100:intron | 45.0% | |
ACCACTTGGAATGCTGACAA+CGG | - | tig0000800:10900-10919 | None:intergenic | 45.0% | |
ACGATATGCTGCTATCTCTC+AGG | + | tig0000800:10961-10980 | Msa1336100:CDS | 45.0% | |
AAGCTCGTCGGTAGAATAAC+TGG | + | tig0000800:11020-11039 | Msa1336100:intron | 45.0% | |
!! | ATTCTTTGGTGCCGTCTTAC+AGG | + | tig0000800:11059-11078 | Msa1336100:intron | 45.0% |
!! | TTCTTTGGTGCCGTCTTACA+GGG | + | tig0000800:11060-11079 | Msa1336100:intron | 45.0% |
TGCTCTTTGTGTTCCATTGC+AGG | + | tig0000800:11458-11477 | Msa1336100:intron | 45.0% | |
TGTGTTCCATTGCAGGACAA+CGG | + | tig0000800:11465-11484 | Msa1336100:intron | 45.0% | |
CAGGCTCAACTATTGGAACA+AGG | - | tig0000800:11491-11510 | None:intergenic | 45.0% | |
! | TGGTGCTGAGCACAAAGAAA+GGG | + | tig0000800:11650-11669 | Msa1336100:CDS | 45.0% |
CAGAAACTAAAGGTGAGGTG+CGG | - | tig0000800:11762-11781 | None:intergenic | 45.0% | |
GTCAGGTGGACAATCAGAAA+TGG | + | tig0000800:12248-12267 | Msa1336100:CDS | 45.0% | |
ATGAGAAAGACACGTGCCAT+GGG | - | tig0000800:12314-12333 | None:intergenic | 45.0% | |
TATGAGAAAGACACGTGCCA+TGG | - | tig0000800:12315-12334 | None:intergenic | 45.0% | |
AGAACACCGTGCTTAAGACA+TGG | + | tig0000800:12349-12368 | Msa1336100:CDS | 45.0% | |
ACCTTGCCATGTCTTAAGCA+CGG | - | tig0000800:12358-12377 | None:intergenic | 45.0% | |
GAGCTGCTTCAACATTCTCA+GGG | - | tig0000800:12383-12402 | None:intergenic | 45.0% | |
TGAGCTGCTTCAACATTCTC+AGG | - | tig0000800:12384-12403 | None:intergenic | 45.0% | |
GAGACACCTCAACTTCTAGT+AGG | - | tig0000800:12517-12536 | None:intergenic | 45.0% | |
! | AGAAGTTGAGGTGTCTCTTG+TGG | + | tig0000800:12520-12539 | Msa1336100:exon | 45.0% |
!! | TTTTGCTGTCCCCCTTATGT+TGG | + | tig0000800:12734-12753 | Msa1336100:three_prime_UTR | 45.0% |
! | TTTGCTGTCCCCCTTATGTT+GGG | + | tig0000800:12735-12754 | Msa1336100:three_prime_UTR | 45.0% |
GTTCACTCCGTCTAAACGGT+TGG | - | tig0000800:9418-9437 | None:intergenic | 50.0% | |
! | GAGTAAGAAGAAGCGCGGAT+CGG | - | tig0000800:9701-9720 | None:intergenic | 50.0% |
CATCGGAGTAAGAAGAAGCG+CGG | - | tig0000800:9706-9725 | None:intergenic | 50.0% | |
!! | GGGAAGCGTTTGGCATCAAT+TGG | + | tig0000800:10113-10132 | Msa1336100:CDS | 50.0% |
AGGTTAATCGCCAGGCTTAC+AGG | + | tig0000800:10150-10169 | Msa1336100:CDS | 50.0% | |
GCAAAAGTTGCCTGTAAGCC+TGG | - | tig0000800:10163-10182 | None:intergenic | 50.0% | |
! | CAACTTTTGCTCACCACACC+CGG | + | tig0000800:10173-10192 | Msa1336100:CDS | 50.0% |
! | GTTTGTGGATTGTCTCCGTG+AGG | + | tig0000800:10268-10287 | Msa1336100:CDS | 50.0% |
CGTGAGGAGAACATTGTACC+TGG | + | tig0000800:10284-10303 | Msa1336100:CDS | 50.0% | |
! | TAGGGTTTGGTTCCTCTACC+AGG | + | tig0000800:10684-10703 | Msa1336100:intron | 50.0% |
! | AGGGTTTGGTTCCTCTACCA+GGG | + | tig0000800:10685-10704 | Msa1336100:intron | 50.0% |
!! | TCTTGGTGCCAAGGTTTGGA+TGG | + | tig0000800:10720-10739 | Msa1336100:CDS | 50.0% |
GTGCCAAGGTTTGGATGGAT+TGG | + | tig0000800:10725-10744 | Msa1336100:CDS | 50.0% | |
! | AAGGTGCTCGATTTGCCAAG+TGG | + | tig0000800:10775-10794 | Msa1336100:CDS | 50.0% |
ACCGTTGTCAGCATTCCAAG+TGG | + | tig0000800:10896-10915 | Msa1336100:CDS | 50.0% | |
TCCTTCTGCCTTGGCTGTTA+AGG | + | tig0000800:10919-10938 | Msa1336100:CDS | 50.0% | |
TCCTTAACAGCCAAGGCAGA+AGG | - | tig0000800:10923-10942 | None:intergenic | 50.0% | |
TGCCTTGGCTGTTAAGGAAG+CGG | + | tig0000800:10925-10944 | Msa1336100:CDS | 50.0% | |
!! | TCTTTGGTGCCGTCTTACAG+GGG | + | tig0000800:11061-11080 | Msa1336100:intron | 50.0% |
ATGGGGACCACCCAATTGAA+AGG | + | tig0000800:11523-11542 | Msa1336100:CDS | 50.0% | |
CCAGTGTCCTTTCAATTGGG+TGG | - | tig0000800:11533-11552 | None:intergenic | 50.0% | |
CCACCCAATTGAAAGGACAC+TGG | + | tig0000800:11530-11549 | Msa1336100:CDS | 50.0% | |
TGGAAGTTGCCGAGAAGGTA+TGG | + | tig0000800:11550-11569 | Msa1336100:CDS | 50.0% | |
GACTTCGGACCATACCTTCT+CGG | - | tig0000800:11562-11581 | None:intergenic | 50.0% | |
AAGCCTAGCATGGTTACACC+TGG | + | tig0000800:11630-11649 | Msa1336100:CDS | 50.0% | |
CTTTCTTTGTGCTCAGCACC+AGG | - | tig0000800:11651-11670 | None:intergenic | 50.0% | |
! | CTGGTGCTGAGCACAAAGAA+AGG | + | tig0000800:11649-11668 | Msa1336100:CDS | 50.0% |
GTAACGGTACCATGATTCCG+GGG | - | tig0000800:11740-11759 | None:intergenic | 50.0% | |
! | GGTAACGGTACCATGATTCC+GGG | - | tig0000800:11741-11760 | None:intergenic | 50.0% |
! | CGGTAACGGTACCATGATTC+CGG | - | tig0000800:11742-11761 | None:intergenic | 50.0% |
CTAAAGGTGAGGTGCGGTAA+CGG | - | tig0000800:11756-11775 | None:intergenic | 50.0% | |
TGAACCAAAGTCCCAACCCA+TGG | + | tig0000800:12295-12314 | Msa1336100:CDS | 50.0% | |
AAAGACACGTGCCATGGGTT+GGG | - | tig0000800:12309-12328 | None:intergenic | 50.0% | |
CTTAAGCACGGTGTTCTGCA+GGG | - | tig0000800:12346-12365 | None:intergenic | 50.0% | |
TCTTAAGCACGGTGTTCTGC+AGG | - | tig0000800:12347-12366 | None:intergenic | 50.0% | |
ACCGTGCTTAAGACATGGCA+AGG | + | tig0000800:12354-12373 | Msa1336100:CDS | 50.0% | |
!! | CCAAGGAGTTAGCTTTGGCA+CGG | - | tig0000800:12422-12441 | None:intergenic | 50.0% |
! | CTGAGCCAAGGAGTTAGCTT+TGG | - | tig0000800:12427-12446 | None:intergenic | 50.0% |
GTATCTTCCAAGCTGAGCCA+AGG | - | tig0000800:12439-12458 | None:intergenic | 50.0% | |
CTTGGAAGATACTCTGCCGA+GGG | + | tig0000800:12447-12466 | Msa1336100:CDS | 50.0% | |
! | GGCTTCTTCATTTTCGCCCT+CGG | - | tig0000800:12466-12485 | None:intergenic | 50.0% |
!! | GAGGTGTCTCTTGTGGCTTT+TGG | + | tig0000800:12527-12546 | Msa1336100:three_prime_UTR | 50.0% |
CCACCACGACGAGAAGAGAA+AGG | - | tig0000800:9650-9669 | None:intergenic | 55.0% | |
CCTTTCTCTTCTCGTCGTGG+TGG | + | tig0000800:9647-9666 | Msa1336100:CDS | 55.0% | |
TCTGTTGCATCTCGTGGTCG+TGG | + | tig0000800:10056-10075 | Msa1336100:CDS | 55.0% | |
TGATGCCAAACGCTTCCCAG+CGG | - | tig0000800:10111-10130 | None:intergenic | 55.0% | |
GTATTCACCTAGACCGGGTG+TGG | - | tig0000800:10189-10208 | None:intergenic | 55.0% | |
TCCAAGTGGTCCTTCTGCCT+TGG | + | tig0000800:10910-10929 | Msa1336100:CDS | 55.0% | |
AGCATATCGTGCAAGTCCCC+AGG | - | tig0000800:10951-10970 | None:intergenic | 55.0% | |
ACAAGGCCGTTGTCCTGCAA+TGG | - | tig0000800:11474-11493 | None:intergenic | 55.0% | |
GACACTGGAAGTTGCCGAGA+AGG | + | tig0000800:11545-11564 | Msa1336100:CDS | 55.0% | |
GCACCAGGTGTAACCATGCT+AGG | - | tig0000800:11636-11655 | None:intergenic | 55.0% | |
GAAAGACACGTGCCATGGGT+TGG | - | tig0000800:12310-12329 | None:intergenic | 55.0% | |
CCGTGCCAAAGCTAACTCCT+TGG | + | tig0000800:12419-12438 | Msa1336100:CDS | 55.0% | |
GCTAACTCCTTGGCTCAGCT+TGG | + | tig0000800:12429-12448 | Msa1336100:CDS | 55.0% | |
GCTTGGAAGATACTCTGCCG+AGG | + | tig0000800:12446-12465 | Msa1336100:CDS | 55.0% | |
CGGAAGAGAGACGTTGCGAG+TGG | - | tig0000800:9681-9700 | None:intergenic | 60.0% | |
!! | TGCAACCGCTGGGAAGCGTT+TGG | + | tig0000800:10103-10122 | Msa1336100:CDS | 60.0% |
TTGCTCACCACACCCGGTCT+AGG | + | tig0000800:10179-10198 | Msa1336100:CDS | 60.0% | |
GCCAAGGCAGAAGGACCACT+TGG | - | tig0000800:10914-10933 | None:intergenic | 60.0% | |
GGCCGCTTCCTTAACAGCCA+AGG | - | tig0000800:10930-10949 | None:intergenic | 60.0% | |
TGGCTGTTAAGGAAGCGGCC+TGG | + | tig0000800:10930-10949 | Msa1336100:CDS | 60.0% | |
GGCTGTTAAGGAAGCGGCCT+GGG | + | tig0000800:10931-10950 | Msa1336100:CDS | 60.0% | |
GCTGTTAAGGAAGCGGCCTG+GGG | + | tig0000800:10932-10951 | Msa1336100:CDS | 60.0% | |
AGAGTTCCTCCTGCAGTCCC+CGG | + | tig0000800:11720-11739 | Msa1336100:CDS | 60.0% | |
ATGATTCCGGGGACTGCAGG+AGG | - | tig0000800:11729-11748 | None:intergenic | 60.0% | |
TCCTGCAGTCCCCGGAATCA+TGG | + | tig0000800:11728-11747 | Msa1336100:CDS | 60.0% | |
ACCATGATTCCGGGGACTGC+AGG | - | tig0000800:11732-11751 | None:intergenic | 60.0% | |
!! | CGTGCCATGGGTTGGGACTT+TGG | - | tig0000800:12302-12321 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0000800 | gene | 9399 | 12824 | 9399 | ID=Msa1336100;Name=Msa1336100 |
tig0000800 | mRNA | 9399 | 12824 | 9399 | ID=Msa1336100-mRNA-1;Parent=Msa1336100;Name=Msa1336100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=197|1|1|1|1|1|6|303|388 |
tig0000800 | exon | 9399 | 9742 | 9399 | ID=Msa1336100-mRNA-1:exon:561;Parent=Msa1336100-mRNA-1 |
tig0000800 | exon | 10053 | 10322 | 10053 | ID=Msa1336100-mRNA-1:exon:562;Parent=Msa1336100-mRNA-1 |
tig0000800 | exon | 10687 | 10796 | 10687 | ID=Msa1336100-mRNA-1:exon:563;Parent=Msa1336100-mRNA-1 |
tig0000800 | exon | 10892 | 10982 | 10892 | ID=Msa1336100-mRNA-1:exon:564;Parent=Msa1336100-mRNA-1 |
tig0000800 | exon | 11480 | 11749 | 11480 | ID=Msa1336100-mRNA-1:exon:565;Parent=Msa1336100-mRNA-1 |
tig0000800 | exon | 12243 | 12824 | 12243 | ID=Msa1336100-mRNA-1:exon:566;Parent=Msa1336100-mRNA-1 |
tig0000800 | five_prime_UTR | 9399 | 9595 | 9399 | ID=Msa1336100-mRNA-1:five_prime_utr;Parent=Msa1336100-mRNA-1 |
tig0000800 | CDS | 9596 | 9742 | 9596 | ID=Msa1336100-mRNA-1:cds;Parent=Msa1336100-mRNA-1 |
tig0000800 | CDS | 10053 | 10322 | 10053 | ID=Msa1336100-mRNA-1:cds;Parent=Msa1336100-mRNA-1 |
tig0000800 | CDS | 10687 | 10796 | 10687 | ID=Msa1336100-mRNA-1:cds;Parent=Msa1336100-mRNA-1 |
tig0000800 | CDS | 10892 | 10982 | 10892 | ID=Msa1336100-mRNA-1:cds;Parent=Msa1336100-mRNA-1 |
tig0000800 | CDS | 11480 | 11749 | 11480 | ID=Msa1336100-mRNA-1:cds;Parent=Msa1336100-mRNA-1 |
tig0000800 | CDS | 12243 | 12521 | 12243 | ID=Msa1336100-mRNA-1:cds;Parent=Msa1336100-mRNA-1 |
tig0000800 | three_prime_UTR | 12522 | 12824 | 12522 | ID=Msa1336100-mRNA-1:three_prime_utr;Parent=Msa1336100-mRNA-1 |
Gene Sequence |
Protein sequence |