AlfalfaGEDB | Msa1038890

M. sativa cultivar zhongmu-4 / Msa1038890

KEGG: K08145
GO: GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038890	XP_003626331.2	97.723	483	9	1	1	483	1	481	0.0	941

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038890	sp\|Q3ECP7\|ERDL5_ARATH	67.550	453	147	0	9	461	14	466	0.0	612

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038890	A2Q5Z1	97.723	483	9	1	1	483	1	481	0.0	941

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021980	Msa1038890	0.814553	1.452703e-51	-8.615850e-47
Msa0047230	Msa1038890	0.813518	2.457642e-51	-8.615850e-47
Msa0077920	Msa1038890	0.800507	1.395262e-48	-8.615850e-47
Msa0143280	Msa1038890	0.806003	1.015606e-49	-8.615850e-47
Msa0225370	Msa1038890	0.829072	6.316876e-55	-8.615850e-47
Msa0265620	Msa1038890	0.811523	6.710303e-51	-8.615850e-47
Msa0266380	Msa1038890	0.811194	7.907564e-51	-8.615850e-47
Msa0340530	Msa1038890	0.819515	1.115088e-52	-8.615850e-47
Msa0341860	Msa1038890	0.812338	4.458040e-51	-8.615850e-47
Msa0343200	Msa1038890	0.821317	4.305452e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038890	MtrunA17_Chr7g0273281	77.727	440	98	0	22	461	57	496	0.0	719
Msa1038890	MtrunA17_Chr4g0066581	54.605	456	204	2	7	461	34	487	2.29e-178	509
Msa1038890	MtrunA17_Chr7g0273261	97.581	248	4	1	236	483	15	260	1.37e-172	485
Msa1038890	MtrunA17_Chr2g0286721	54.233	437	199	1	26	461	48	484	3.24e-171	491
Msa1038890	MtrunA17_Chr7g0259471	51.835	436	210	0	26	461	39	474	9.09e-158	456
Msa1038890	MtrunA17_Chr7g0259221	53.349	433	202	0	29	461	44	476	2.76e-157	455
Msa1038890	MtrunA17_Chr7g0273271	97.573	206	5	0	1	206	1	206	6.02e-139	398
Msa1038890	MtrunA17_Chr1g0155221	47.111	450	227	3	14	457	41	485	1.20e-138	408
Msa1038890	MtrunA17_Chr8g0373181	45.572	463	246	4	5	461	24	486	5.86e-135	398
Msa1038890	MtrunA17_Chr8g0373191	44.218	441	215	5	27	459	39	456	5.05e-118	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038890	AT1G54730.2	67.550	453	147	0	9	461	14	466	0.0	612
Msa1038890	AT1G54730.5	63.355	453	145	1	9	461	14	445	0.0	560
Msa1038890	AT1G54730.3	67.221	421	138	0	9	429	14	434	0.0	558
Msa1038890	AT1G54730.4	62.708	421	136	1	9	429	14	413	4.24e-178	506
Msa1038890	AT1G54730.9	66.841	383	127	0	9	391	14	396	3.21e-175	498
Msa1038890	AT1G54730.7	66.841	383	127	0	9	391	14	396	3.21e-175	498
Msa1038890	AT2G48020.2	52.597	462	217	1	3	462	2	463	1.51e-173	496
Msa1038890	AT2G48020.1	52.597	462	217	1	3	462	2	463	1.51e-173	496
Msa1038890	AT5G18840.1	53.468	447	207	1	16	461	33	479	2.64e-165	476
Msa1038890	AT1G08930.1	49.776	446	224	0	16	461	47	492	1.88e-156	454

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Find 139 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGTACCAGAGACCA+AGG	0.643814	7_1:+75872667	Msa1038890:CDS
AAAAGAATGACAGAGATACA+AGG	0.644048	7_1:-75871771	None:intergenic
AAAATGAAGTGAAATGAAAA+GGG	0.450699	7_1:-75868573	None:intergenic
AAAATGAGTGTATATGATTG+CGG	0.511891	7_1:-75868531	None:intergenic
AAACTAGTACCAGAGACCAA+GGG	0.649846	7_1:+75872668	Msa1038890:CDS
AAATACTATGAATAGAACAA+GGG	0.721223	7_1:+75872938	Msa1038890:three_prime_UTR
AAATGAGTGTATATGATTGC+GGG	0.408976	7_1:-75868530	None:intergenic
AACGTTAAGAGCTCCCAAGC+TGG	0.545488	7_1:-75868401	None:intergenic
AACTAGTACCAGAGACCAAG+GGG	0.634126	7_1:+75872669	Msa1038890:CDS
AAGAAATGGTATATGATGGA+TGG	0.604160	7_1:+75872813	Msa1038890:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGTGTATATGATTGC+GGG	-	chr7_1:75868533-75868552	None:intergenic	30.0%
TAAGATACACAGATGCTTTA+AGG	-	chr7_1:75868644-75868663	None:intergenic	30.0%
TTCAAAGAAAGTTCAAACCT+CGG	-	chr7_1:75868995-75869014	None:intergenic	30.0%
AATTTGATGTTATAGGCCAT+GGG	+	chr7_1:75869554-75869573	Msa1038890:intron	30.0%
TAGGACCTATAATAAATGGA+AGG	+	chr7_1:75869678-75869697	Msa1038890:intron	30.0%
TAAGAAAGAATTCCCAAAAC+TGG	-	chr7_1:75869762-75869781	None:intergenic	30.0%
TATGTTGGAAGACTATTGTT+AGG	+	chr7_1:75869844-75869863	Msa1038890:CDS	30.0%
AATGGGTATTCTATCATATG+TGG	+	chr7_1:75869873-75869892	Msa1038890:CDS	30.0%
TTATTGGAGCTTTCTTCAAT+TGG	+	chr7_1:75870248-75870267	Msa1038890:CDS	30.0%
ATAGGTAAAGATGTTCTTTC+TGG	+	chr7_1:75870286-75870305	Msa1038890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	75868399	75873082	75868399	ID=Msa1038890;Name=Msa1038890
chr7_1	mRNA	75868399	75873082	75868399	ID=Msa1038890-mRNA-1;Parent=Msa1038890;Name=Msa1038890-mRNA-1;_AED=0.35;_eAED=0.35;_QI=298\|1\|1\|1\|1\|1\|18\|289\|483
chr7_1	exon	75868399	75868828	75868399	ID=Msa1038890-mRNA-1:exon:19499;Parent=Msa1038890-mRNA-1
chr7_1	exon	75868934	75868996	75868934	ID=Msa1038890-mRNA-1:exon:19500;Parent=Msa1038890-mRNA-1
chr7_1	exon	75869385	75869474	75869385	ID=Msa1038890-mRNA-1:exon:19501;Parent=Msa1038890-mRNA-1
chr7_1	exon	75869569	75869628	75869569	ID=Msa1038890-mRNA-1:exon:19502;Parent=Msa1038890-mRNA-1
chr7_1	exon	75869829	75869894	75869829	ID=Msa1038890-mRNA-1:exon:19503;Parent=Msa1038890-mRNA-1
chr7_1	exon	75869994	75870059	75869994	ID=Msa1038890-mRNA-1:exon:19504;Parent=Msa1038890-mRNA-1
chr7_1	exon	75870214	75870289	75870214	ID=Msa1038890-mRNA-1:exon:19505;Parent=Msa1038890-mRNA-1
chr7_1	exon	75870376	75870440	75870376	ID=Msa1038890-mRNA-1:exon:19506;Parent=Msa1038890-mRNA-1
chr7_1	exon	75870739	75870831	75870739	ID=Msa1038890-mRNA-1:exon:19507;Parent=Msa1038890-mRNA-1
chr7_1	exon	75870937	75871017	75870937	ID=Msa1038890-mRNA-1:exon:19508;Parent=Msa1038890-mRNA-1
chr7_1	exon	75871095	75871179	75871095	ID=Msa1038890-mRNA-1:exon:19509;Parent=Msa1038890-mRNA-1
chr7_1	exon	75871421	75871464	75871421	ID=Msa1038890-mRNA-1:exon:19510;Parent=Msa1038890-mRNA-1
chr7_1	exon	75871599	75871661	75871599	ID=Msa1038890-mRNA-1:exon:19511;Parent=Msa1038890-mRNA-1
chr7_1	exon	75871739	75871798	75871739	ID=Msa1038890-mRNA-1:exon:19512;Parent=Msa1038890-mRNA-1
chr7_1	exon	75871891	75871944	75871891	ID=Msa1038890-mRNA-1:exon:19513;Parent=Msa1038890-mRNA-1
chr7_1	exon	75872206	75872265	75872206	ID=Msa1038890-mRNA-1:exon:19514;Parent=Msa1038890-mRNA-1
chr7_1	exon	75872355	75872469	75872355	ID=Msa1038890-mRNA-1:exon:19515;Parent=Msa1038890-mRNA-1
chr7_1	exon	75872615	75873082	75872615	ID=Msa1038890-mRNA-1:exon:19516;Parent=Msa1038890-mRNA-1
chr7_1	five_prime_UTR	75868399	75868696	75868399	ID=Msa1038890-mRNA-1:five_prime_utr;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75868697	75868828	75868697	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75868934	75868996	75868934	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75869385	75869474	75869385	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75869569	75869628	75869569	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75869829	75869894	75869829	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75869994	75870059	75869994	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75870214	75870289	75870214	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75870376	75870440	75870376	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75870739	75870831	75870739	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75870937	75871017	75870937	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75871095	75871179	75871095	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75871421	75871464	75871421	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75871599	75871661	75871599	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75871739	75871798	75871739	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75871891	75871944	75871891	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75872206	75872265	75872206	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75872355	75872469	75872355	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	CDS	75872615	75872793	75872615	ID=Msa1038890-mRNA-1:cds;Parent=Msa1038890-mRNA-1
chr7_1	three_prime_UTR	75872794	75873082	75872794	ID=Msa1038890-mRNA-1:three_prime_utr;Parent=Msa1038890-mRNA-1

Gene Sequence

>Msa1038890

ATGAAGACTAAGTTTAAAGATTTTTCTCGTCTACTTTCTTCCATTCGCGAAGAAGCTAGTTCGGTACCAACTAGTATTCTTATACTTACCACCCTTGCTGCTGTCTCTGGTTCTTATGTTTTTGGCTCTGCGGTGGGTTATTCATCCCCTGCTCAATCTGGAATCACAGATGACCTTGATCTTGGCGTAGCCGAGTATTCACTTTTTGGTTCAATACTAACAATTGGAGCGATGGTTGGTGCCATTGTAAGTGGTAGTTTAGCAGATTATGCAGGTCGTCGAGCCGCCATGGGATTCTCCGAGCTATGTTGCATCTTGGGATGGCTTGCCATTGCAGTCTCAAAGGTTGCTTGGTGGCTTTATGTTGGAAGACTATTGTTAGGATGTGGAATGGGTATTCTATCATATGTGGTACCAATTTATATAGCTGAAATAACACCCAAGGATCTTCGAGGGAGATTCACTGCAGTTCATCAGCTAATGATTTGTTTTGGGGTATCACTAACTTATCTTATTGGAGCTTTCTTCAATTGGAGGCTTTTGGCTATAATAGGAACTATTCCATGTCTTGCACAGCTTCTGAGTCTATCCTTTATTCCCGAGTCTCCTAGGTGGCTGGCAAAGGTTGGTCGCTTGGAAAGGAGTGAATCCACTTTACAGCACCTTAGGGGAAAGAATGTTGATATTTCTGAAGAGGCCACTGAAATTAGAGAATTTACAGAAGCCTCTCAGCAGCAAACAGAAGCTAACATTTTTGGGTTATTTCAATTGCAGTATTTGAAGTCACTTACTGTAGGAGTTGGCCTGATAATACTACAACAGTTTGGCGGAGTTAACGGCATTGCTTTTTATGCAAGTTCTATATTTGTCTCTGCTGGGTTTTCCAGAAGTATTGGAACAATAGCAATGGTTGTTGTTCAGATCCCAATGACAGCTTTGGGAGTAATTTTGATGGATAAATCTGGAAGACGACCCCTTTTACTGATCTCTGCATCAGGAACATGCTTAGGATGCTTCCTTGTATCTCTGTCATTCTTTTTGCAGGACTTGCATAAATGGAAGGAATTCAGTCCCATTCTGGCACTCGTCGGTGTACTGGTATATACAGGATCTTTCTCACTTGGCATGGGAGGAATACCCTGGGTTATAATGTCTGAGATATTTCCCATCAATGTGAAGGGTTCTGCTGGAAGCTTTGTTACATTTGTTCACTGGTTGTGTTCTTGGATTGTATCATATGCTTTTAACTTCCTCATGAGTTGGAATTCAGCAGGAACTTTCTTCATATTCTCTAGCATCTGTGGCCTCACCATTCTATTTGTAGCAAAACTAGTACCAGAGACCAAGGGGCGTACGCTAGAAGAAGTTCAAGCGTCTCTCAATCCATATCAGACAGTATCCAACAAAGAGATGAATTTGGCATATGATCCTGTAACAGAATTGCATGCATAA

Protein sequence

>Msa1038890

MKTKFKDFSRLLSSIREEASSVPTSILILTTLAAVSGSYVFGSAVGYSSPAQSGITDDLDLGVAEYSLFGSILTIGAMVGAIVSGSLADYAGRRAAMGFSELCCILGWLAIAVSKVAWWLYVGRLLLGCGMGILSYVVPIYIAEITPKDLRGRFTAVHQLMICFGVSLTYLIGAFFNWRLLAIIGTIPCLAQLLSLSFIPESPRWLAKVGRLERSESTLQHLRGKNVDISEEATEIREFTEASQQQTEANIFGLFQLQYLKSLTVGVGLIILQQFGGVNGIAFYASSIFVSAGFSRSIGTIAMVVVQIPMTALGVILMDKSGRRPLLLISASGTCLGCFLVSLSFFLQDLHKWKEFSPILALVGVLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSAGTFFIFSSICGLTILFVAKLVPETKGRTLEEVQASLNPYQTVSNKEMNLAYDPVTELHA*