AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159240 MtrunA17_Chr1g0171581 76.712 292 2 3 1 291 1 227 2.70e-150 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159240 AT5G04440.1 58.140 258 43 2 34 291 63 255 1.12e-98 290
Msa0159240 AT5G04440.2 60.930 215 39 1 34 248 63 232 1.32e-86 259
Msa0159240 AT4G31115.1 27.536 138 89 3 34 163 54 188 8.33e-13 67.4
Msa0159240 AT4G31115.2 27.536 138 89 3 34 163 78 212 1.53e-12 67.0

Find 97 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGAGAAGGTCGAGGAAT+TGG 0.294857 1_4:-29249517 Msa0159240:five_prime_UTR
GCTGATTCAATTGCTTGCTT+TGG 0.335311 1_4:+29247944 None:intergenic
TCAGATTACATAACCATAAC+TGG 0.343782 1_4:+29244431 None:intergenic
AACACTGAATATTGACTTGC+TGG 0.347727 1_4:+29249212 None:intergenic
AACAAACCTGTGACATAAAA+CGG 0.350906 1_4:+29247879 None:intergenic
GATTATCAAGCCTGGGCCTC+TGG 0.362325 1_4:-29244707 Msa0159240:CDS
TGATTATGATATTCCAGTTA+TGG 0.362872 1_4:-29244444 Msa0159240:three_prime_UTR
TCCAACTTCCCTTTGTAGTC+AGG 0.370648 1_4:-29248845 Msa0159240:CDS
CAAGAAGTGGAAGGCGTTGT+TGG 0.383157 1_4:+29249434 None:intergenic
TACAAACCAAACCAAACCTT+TGG 0.383333 1_4:+29249606 None:intergenic
AAAGTAGGTACCTACCTTGC+AGG 0.389681 1_4:+29249046 None:intergenic
TGTGTGCATGGATTAATTAT+TGG 0.391776 1_4:-29244560 Msa0159240:three_prime_UTR
GTCAAACCAAAGGTTTGGTT+TGG 0.394778 1_4:-29249612 Msa0159240:five_prime_UTR
ACAAACCTGTGACATAAAAC+GGG 0.400266 1_4:+29247880 None:intergenic
TCAACTTTGACAAGCAAAAC+AGG 0.418135 1_4:+29249104 None:intergenic
AATTGGGATGGCTTCGTCAT+TGG 0.418577 1_4:-29249500 Msa0159240:exon
GAGTTGATGACAACGTGAAA+TGG 0.422343 1_4:+29249456 None:intergenic
CAAGAGAAGGTCGAGGAATT+GGG 0.424177 1_4:-29249516 Msa0159240:five_prime_UTR
GAGCTTAATGCAACAGCCAT+TGG 0.425284 1_4:+29249073 None:intergenic
ATGTGGTAATGCAGCTATAA+TGG 0.425880 1_4:-29248169 Msa0159240:intron
TTTCTTACATTACAGCTTCA+GGG 0.426577 1_4:-29248973 Msa0159240:intron
TAATCTTGAGTATTTGTTCA+AGG 0.430233 1_4:+29247909 None:intergenic
TGAGGCATTTCCAGAGGCCC+AGG 0.437530 1_4:+29244697 None:intergenic
AGGTTTGGTTTGGTTTGTAA+TGG 0.441966 1_4:-29249602 Msa0159240:five_prime_UTR
AAGCAAGCAATTGAATCAGC+TGG 0.447176 1_4:-29247941 Msa0159240:CDS
TGTCTTGGCTTGTGTGTGGA+TGG 0.447815 1_4:+29249542 None:intergenic
AGTCACTTTCACACGATATC+CGG 0.455952 1_4:+29248142 None:intergenic
GGTTTGTCAAACCAAAGGTT+TGG 0.456697 1_4:-29249617 None:intergenic
AGCAACGAAACGGGCTTTGT+GGG 0.456712 1_4:+29249390 None:intergenic
GCTCAGAACGACAAGTTTGA+TGG 0.461254 1_4:-29248934 Msa0159240:intron
CGTTCTGAGCAGCGACCATA+GGG 0.461288 1_4:+29248947 None:intergenic
AACCGTGGTTGCACTGGTGC+TGG 0.461802 1_4:-29244634 Msa0159240:three_prime_UTR
ATGCCTCAAGGCAACCTCTT+GGG 0.464009 1_4:-29244682 Msa0159240:CDS
AGCTTAATGCAACAGCCATT+GGG 0.464658 1_4:+29249074 None:intergenic
GAGCAACGAAACGGGCTTTG+TGG 0.479564 1_4:+29249389 None:intergenic
CTTACGGCGAGCAACGAAAC+GGG 0.479910 1_4:+29249381 None:intergenic
AGTAGCGGTGGCCAGAGTTA+TGG 0.485259 1_4:-29244838 Msa0159240:intron
TCGTTCTGAGCAGCGACCAT+AGG 0.486521 1_4:+29248946 None:intergenic
CTCAAAGTTGTAGTAATGGC+TGG 0.487166 1_4:+29248822 None:intergenic
AATGCCTCAAGGCAACCTCT+TGG 0.493109 1_4:-29244683 Msa0159240:CDS
GCCTGACTACAAAGGGAAGT+TGG 0.495036 1_4:+29248844 None:intergenic
CTCTGTACATTGGTGATAGT+TGG 0.495607 1_4:-29244372 Msa0159240:three_prime_UTR
TTGTGAAAGATTATCAAGCC+TGG 0.500950 1_4:-29244715 Msa0159240:CDS
ATGCAGCTATAATGGTGAAC+CGG 0.501075 1_4:-29248161 Msa0159240:intron
TGAAATGGGTTGAACAAGAA+TGG 0.501639 1_4:+29249471 None:intergenic
CCGTTTCGTTGCTCGCCGTA+AGG 0.506017 1_4:-29249380 Msa0159240:CDS
GAACAGAAACAGACTCCTTA+CGG 0.507973 1_4:+29249365 None:intergenic
TAGGACAAATCGATAGCGTA+AGG 0.510309 1_4:-29244499 Msa0159240:three_prime_UTR
GGTATTGCTTTGAAAGCGAA+AGG 0.511262 1_4:+29247965 None:intergenic
CCTTACGGCGAGCAACGAAA+CGG 0.521735 1_4:+29249380 None:intergenic
ATAAGTAACCGTGGTTGCAC+TGG 0.523590 1_4:-29244640 Msa0159240:three_prime_UTR
TCAAGGCAACCTCTTGGGAC+AGG 0.526109 1_4:-29244677 Msa0159240:CDS
TTGGTTTGGTTTGTAATGGA+TGG 0.528306 1_4:-29249598 Msa0159240:five_prime_UTR
ATGGCTGGCCTGACTACAAA+GGG 0.529019 1_4:+29248837 None:intergenic
ACAGCTTCAGGGTTCCCCTA+TGG 0.530007 1_4:-29248962 Msa0159240:intron
CACATCAGACACTATAATTG+AGG 0.533833 1_4:-29248094 Msa0159240:intron
GTGTGAGTGAGGATACATTC+AGG 0.534369 1_4:-29249169 Msa0159240:CDS
AAAGCTCAAAGTTGTAGTAA+TGG 0.535973 1_4:+29248818 None:intergenic
ATTCAGTGTTGGACGCTGAA+AGG 0.542698 1_4:-29249199 Msa0159240:CDS
AAATCCTTGACAAAATCTGC+AGG 0.544592 1_4:+29248742 None:intergenic
TGCTGCTTGTAGTGTGTGCA+TGG 0.548904 1_4:-29244572 Msa0159240:three_prime_UTR
GGCTTGTGTGTGGATGGATG+TGG 0.549161 1_4:+29249548 None:intergenic
AGTTGATGACAACGTGAAAT+GGG 0.550183 1_4:+29249457 None:intergenic
TTGCCTTGAGGCATTTCCAG+AGG 0.558238 1_4:+29244691 None:intergenic
AGCAAGCAATTGAATCAGCT+GGG 0.564610 1_4:-29247940 Msa0159240:CDS
ACTACTTACTTAGGGGACGT+TGG 0.565216 1_4:+29249335 None:intergenic
GGGCCTCTGGAAATGCCTCA+AGG 0.565504 1_4:-29244694 Msa0159240:CDS
TGTGAAAGATTATCAAGCCT+GGG 0.569096 1_4:-29244714 Msa0159240:CDS
CATTAAGCTCTTATCCTGCA+AGG 0.575460 1_4:-29249060 Msa0159240:intron
AGCCAAGACAAAACAAGAGA+AGG 0.578775 1_4:-29249529 Msa0159240:five_prime_UTR
CAGATTTCACCTGTCCCAAG+AGG 0.585810 1_4:+29244668 None:intergenic
AAACGGGCTTTGTGGGTCGA+AGG 0.589377 1_4:+29249397 None:intergenic
AGGACAAATCGATAGCGTAA+GGG 0.589690 1_4:-29244498 Msa0159240:three_prime_UTR
GGACAAATCGATAGCGTAAG+GGG 0.590710 1_4:-29244497 Msa0159240:three_prime_UTR
GGAGTTGCTGAAGCAAGAAG+TGG 0.592610 1_4:+29249421 None:intergenic
GATTCACAAACTCTGTACAT+TGG 0.593215 1_4:-29244382 Msa0159240:three_prime_UTR
AAATCCGCAGGTAAATCCGC+AGG 0.594566 1_4:+29248794 None:intergenic
CGGGCTTTGTGGGTCGAAGG+AGG 0.597317 1_4:+29249400 None:intergenic
CTATTGTAGAACCATAACTC+TGG 0.598071 1_4:+29244827 None:intergenic
AGCAAGTCAATATTCAGTGT+TGG 0.598943 1_4:-29249210 Msa0159240:CDS
AATGGCTGGCCTGACTACAA+AGG 0.601443 1_4:+29248836 None:intergenic
ACTTTGGTTTGTCAAACCAA+AGG 0.617879 1_4:-29249622 None:intergenic
AAGTGACTCAGATAAGTCAC+TGG 0.624597 1_4:-29248127 Msa0159240:CDS
AGCCAGCACCAGTGCAACCA+CGG 0.629709 1_4:+29244632 None:intergenic
GACAAAACAAGAGAAGGTCG+AGG 0.640385 1_4:-29249523 Msa0159240:five_prime_UTR
TGCAGGAAATGTGTTTCCTG+CGG 0.646215 1_4:+29248759 None:intergenic
AGAAGGTCGAGGAATTGGGA+TGG 0.662357 1_4:-29249512 Msa0159240:exon
TTGCTGAAGCAAGAAGTGGA+AGG 0.666859 1_4:+29249425 None:intergenic
AAAGTTGAACAACAACCCAA+TGG 0.669566 1_4:-29249089 Msa0159240:CDS
CTTGCTGACTACAGTAGCGG+TGG 0.675462 1_4:-29244850 Msa0159240:CDS
TCTGAAATAATAAGTAACCG+TGG 0.682131 1_4:-29244649 Msa0159240:exon
CAAACCTGTGACATAAAACG+GGG 0.689169 1_4:+29247881 None:intergenic
GACAAATCGATAGCGTAAGG+GGG 0.689226 1_4:-29244496 Msa0159240:three_prime_UTR
ATACTTGCTGACTACAGTAG+CGG 0.695453 1_4:-29244853 Msa0159240:CDS
TGTCCCAAGAGGTTGCCTTG+AGG 0.701420 1_4:+29244679 None:intergenic
AAGGATTGAACGTGTGAGTG+AGG 0.702772 1_4:-29249180 Msa0159240:CDS
GTTCTGAGCAGCGACCATAG+GGG 0.776434 1_4:+29248948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATACAATTTTTTGTA+TGG + chr1_4:29247701-29247720 None:intergenic 10.0%
!!! AAGTACATGATATTTTAAAT+GGG + chr1_4:29246842-29246861 None:intergenic 15.0%
!!! AAAGTACATGATATTTTAAA+TGG + chr1_4:29246843-29246862 None:intergenic 15.0%
!!! TCAAATTTTTATACATATAC+TGG + chr1_4:29247148-29247167 None:intergenic 15.0%
!! TTATATACAGTTCATATAAA+AGG + chr1_4:29248393-29248412 None:intergenic 15.0%
!! TCTCTAGTAATAAATTATTA+TGG + chr1_4:29248545-29248564 None:intergenic 15.0%
!! AATAATTTATTACTAGAGAT+AGG - chr1_4:29248546-29248565 Msa0159240:intron 15.0%
!!! TTTGAAAATTTTATGACAAT+TGG + chr1_4:29248606-29248625 None:intergenic 15.0%
!!! TTTTTTCTATATAAAATCCA+AGG + chr1_4:29248642-29248661 None:intergenic 15.0%
!!! TTTTAATAATAAGTTTTCCT+AGG + chr1_4:29248669-29248688 None:intergenic 15.0%
!!! TTGATAATACTACTTACTTA+GGG + chr1_4:29244612-29244631 None:intergenic 20.0%
!!! AATTAAGTTTTTCACATTTG+AGG - chr1_4:29244804-29244823 Msa0159240:intron 20.0%
!! GATTTAATGATAAGTAAAGT+AGG + chr1_4:29244908-29244927 None:intergenic 20.0%
!! AGAAAACAAGAAATAAGAAA+GGG + chr1_4:29244948-29244967 None:intergenic 20.0%
!! AAGAAAACAAGAAATAAGAA+AGG + chr1_4:29244949-29244968 None:intergenic 20.0%
!! AATCTCTATTCATGAATATA+GGG + chr1_4:29246203-29246222 None:intergenic 20.0%
!! TAATCTCTATTCATGAATAT+AGG + chr1_4:29246204-29246223 None:intergenic 20.0%
!! ATAAAGACTTTCATCAAATT+CGG - chr1_4:29246422-29246441 Msa0159240:intron 20.0%
!! TTAACATAAGACCAAAAAAA+GGG - chr1_4:29246646-29246665 Msa0159240:intron 20.0%
!!! AGTACATGATATTTTAAATG+GGG + chr1_4:29246841-29246860 None:intergenic 20.0%
!!! TAACTATCTTACTTTTAAAG+AGG + chr1_4:29246932-29246951 None:intergenic 20.0%
!!! TTTATGCTGATTATATTTCA+TGG + chr1_4:29247037-29247056 None:intergenic 20.0%
!!! ATTTATCAATCTTTTGTAGT+TGG + chr1_4:29247104-29247123 None:intergenic 20.0%
!! CTAATGGTTTAAACTTTAAA+TGG - chr1_4:29247416-29247435 Msa0159240:intron 20.0%
!!! CACAAATACGTATATAATTT+TGG - chr1_4:29247542-29247561 Msa0159240:intron 20.0%
!! TGTATAATAACTGATAAAAC+AGG - chr1_4:29247711-29247730 Msa0159240:intron 20.0%
!! ATCAACAAAATTATGTACAT+TGG + chr1_4:29247764-29247783 None:intergenic 20.0%
!!! GATTATGTTATTTTAAAGGT+TGG + chr1_4:29248119-29248138 None:intergenic 20.0%
!!! ACCTTTAAAATAACATAATC+TGG - chr1_4:29248119-29248138 Msa0159240:CDS 20.0%
!!! CCTTTAAAATAACATAATCT+GGG - chr1_4:29248120-29248139 Msa0159240:CDS 20.0%
!!! AAATTTTGAGTATTTGTTCA+AGG + chr1_4:29248251-29248270 None:intergenic 20.0%
!! TGAACAAATACTCAAAATTT+AGG - chr1_4:29248251-29248270 Msa0159240:intron 20.0%
!!! TATTATGGATTTCACATTTT+AGG + chr1_4:29248530-29248549 None:intergenic 20.0%
!! TATATAGAAAAAATCATCCT+AGG - chr1_4:29248649-29248668 Msa0159240:intron 20.0%
!! TAAAAGACCAATGAAATAAA+AGG + chr1_4:29249039-29249058 None:intergenic 20.0%
!!! TGAAGTTTTGTACTAATTTT+AGG - chr1_4:29249145-29249164 Msa0159240:CDS 20.0%
!!! TAGTTTTTTCTGATTCTTTT+AGG - chr1_4:29249418-29249437 Msa0159240:CDS 20.0%
! TGATAATACTACTTACTTAG+GGG + chr1_4:29244611-29244630 None:intergenic 25.0%
!! CTTGATAATACTACTTACTT+AGG + chr1_4:29244613-29244632 None:intergenic 25.0%
! AAGGGTGAAAAAGAAAATAT+GGG + chr1_4:29244930-29244949 None:intergenic 25.0%
! AAAGGGTGAAAAAGAAAATA+TGG + chr1_4:29244931-29244950 None:intergenic 25.0%
! ACGGTGATTTCAAAATTATA+TGG - chr1_4:29245611-29245630 Msa0159240:intron 25.0%
! GTCATTTCAATACTTTAATG+TGG - chr1_4:29245750-29245769 Msa0159240:intron 25.0%
! TAAAATTCAGAAGAAAACGA+TGG + chr1_4:29245886-29245905 None:intergenic 25.0%
! TAATCTTGAGTATTTGTTCA+AGG + chr1_4:29246030-29246049 None:intergenic 25.0%
! TTTGTATGAAATAAGCTGTA+AGG - chr1_4:29246128-29246147 Msa0159240:intron 25.0%
! TTGTATGAAATAAGCTGTAA+GGG - chr1_4:29246129-29246148 Msa0159240:intron 25.0%
! TTCATGAATAGAGATTAACA+CGG - chr1_4:29246207-29246226 Msa0159240:intron 25.0%
! CTATAAATTGTTCTGTTCTT+TGG + chr1_4:29246319-29246338 None:intergenic 25.0%
! AGAACAGAACAATTTATAGA+AGG - chr1_4:29246320-29246339 Msa0159240:intron 25.0%
! GAACAGAACAATTTATAGAA+GGG - chr1_4:29246321-29246340 Msa0159240:intron 25.0%
!!! CTTTTTTTGGTCTTATGTTA+AGG + chr1_4:29246647-29246666 None:intergenic 25.0%
! CTTAACATAAGACCAAAAAA+AGG - chr1_4:29246645-29246664 Msa0159240:intron 25.0%
!! CTTTGATTAATTGTGTGTTT+TGG + chr1_4:29246788-29246807 None:intergenic 25.0%
! ATAAATGTGTTTATGTGTCA+AGG - chr1_4:29247052-29247071 Msa0159240:intron 25.0%
! TGTACTACATTCTAATCTAA+TGG - chr1_4:29247400-29247419 Msa0159240:intron 25.0%
! ACAATAAAGACTGTCATATT+TGG + chr1_4:29247443-29247462 None:intergenic 25.0%
! AAGTAATGACTTCATAGATA+TGG + chr1_4:29247466-29247485 None:intergenic 25.0%
! AAACAGGATTACTCTATAAA+TGG - chr1_4:29247727-29247746 Msa0159240:intron 25.0%
! TTATGTAGGATAAATAGCTT+TGG + chr1_4:29247802-29247821 None:intergenic 25.0%
! CATCAACATAATTTATAGTG+AGG + chr1_4:29247875-29247894 None:intergenic 25.0%
!!! TAAGTTTTATTGTTCTTTCC+AGG + chr1_4:29247974-29247993 None:intergenic 25.0%
!!! CCCAGATTATGTTATTTTAA+AGG + chr1_4:29248123-29248142 None:intergenic 25.0%
! AGTTTAAAAGTCACATTTCT+TGG - chr1_4:29248356-29248375 Msa0159240:intron 25.0%
! GTTTAAAAGTCACATTTCTT+GGG - chr1_4:29248357-29248376 Msa0159240:intron 25.0%
! AACTGTATATAAATTGCGTA+GGG - chr1_4:29248401-29248420 Msa0159240:intron 25.0%
! CAAATACTCTATAATATCCT+TGG - chr1_4:29248622-29248641 Msa0159240:intron 25.0%
! AAACATTGCAACATGTAATA+TGG + chr1_4:29248704-29248723 None:intergenic 25.0%
! CTGTTTATTAGGTAAATGTA+TGG - chr1_4:29248878-29248897 Msa0159240:intron 25.0%
! TGATTATGATATTCCAGTTA+TGG - chr1_4:29249492-29249511 Msa0159240:CDS 25.0%
! TTTTCTTACATTACAGCTTC+AGG - chr1_4:29244962-29244981 Msa0159240:intron 30.0%
TTTCTTACATTACAGCTTCA+GGG - chr1_4:29244963-29244982 Msa0159240:intron 30.0%
AAAGCTCAAAGTTGTAGTAA+TGG + chr1_4:29245121-29245140 None:intergenic 30.0%
! CAAAATTTTTACCAAAGCCT+GGG + chr1_4:29245242-29245261 None:intergenic 30.0%
! TCTTGTTACTTATCGAATCT+CGG - chr1_4:29245347-29245366 Msa0159240:intron 30.0%
! GATGACTTGTATTATAAAGC+TGG - chr1_4:29245391-29245410 Msa0159240:intron 30.0%
TACAAAAAGGGTAGATGAAA+TGG - chr1_4:29245525-29245544 Msa0159240:intron 30.0%
AGTAAATGTGAATGTAGCTA+AGG - chr1_4:29245582-29245601 Msa0159240:intron 30.0%
AAGGGAAAAAGGAAATTTGT+AGG - chr1_4:29245689-29245708 Msa0159240:intron 30.0%
!! ATTTGATTCATGCTACTTTC+AGG - chr1_4:29245724-29245743 Msa0159240:intron 30.0%
AACAAACCTGTGACATAAAA+CGG + chr1_4:29246060-29246079 None:intergenic 30.0%
TCATGAATAGAGATTAACAC+GGG - chr1_4:29246208-29246227 Msa0159240:intron 30.0%
TAGTACAATGATGAGTACAA+AGG - chr1_4:29246261-29246280 Msa0159240:intron 30.0%
AGTACAAAGGAACAAATGAT+TGG - chr1_4:29246274-29246293 Msa0159240:intron 30.0%
GTACAAAGGAACAAATGATT+GGG - chr1_4:29246275-29246294 Msa0159240:intron 30.0%
TGGTATATAATAGCAGTGTA+AGG + chr1_4:29246464-29246483 None:intergenic 30.0%
GTTAGTTGTAACAAAGAGAT+TGG + chr1_4:29246529-29246548 None:intergenic 30.0%
TACAACTAACTTTCATGATG+TGG - chr1_4:29246539-29246558 Msa0159240:intron 30.0%
TGACGAAGAACAAATTACAA+AGG - chr1_4:29246600-29246619 Msa0159240:intron 30.0%
GACGAAGAACAAATTACAAA+GGG - chr1_4:29246601-29246620 Msa0159240:intron 30.0%
ACGAAGAACAAATTACAAAG+GGG - chr1_4:29246602-29246621 Msa0159240:intron 30.0%
!!! TTTTTGGTCTTATGTTAAGG+AGG + chr1_4:29246644-29246663 None:intergenic 30.0%
! GAGCTTTAGTGTATAAAAGA+GGG + chr1_4:29246750-29246769 None:intergenic 30.0%
!!! TGTTTTGGTCTTATGTTAAG+GGG + chr1_4:29246773-29246792 None:intergenic 30.0%
!!! GTGTTTTGGTCTTATGTTAA+GGG + chr1_4:29246774-29246793 None:intergenic 30.0%
!!! TGTGTTTTGGTCTTATGTTA+AGG + chr1_4:29246775-29246794 None:intergenic 30.0%
AAACAGATATCTCAAGGATT+AGG + chr1_4:29246814-29246833 None:intergenic 30.0%
TAATCCTTGAGATATCTGTT+TGG - chr1_4:29246813-29246832 Msa0159240:intron 30.0%
!!! TCTCACTTTTGGCTTATATT+TGG + chr1_4:29246869-29246888 None:intergenic 30.0%
! GTTGGAGTAAAAGTTGATTT+GGG + chr1_4:29246905-29246924 None:intergenic 30.0%
! TGTTGGAGTAAAAGTTGATT+TGG + chr1_4:29246906-29246925 None:intergenic 30.0%
!! TACTTTTAAAGAGGTCTTGT+TGG + chr1_4:29246923-29246942 None:intergenic 30.0%
CTGATTATATTTCATGGACA+TGG + chr1_4:29247031-29247050 None:intergenic 30.0%
TTTGAATGTTTACACACATG+AGG - chr1_4:29247163-29247182 Msa0159240:intron 30.0%
TTGAATGTTTACACACATGA+GGG - chr1_4:29247164-29247183 Msa0159240:intron 30.0%
GAAGAAAAAGATAGTCCTAT+AGG + chr1_4:29247377-29247396 None:intergenic 30.0%
ACATGATGACTTTATGAGAT+AGG + chr1_4:29247852-29247871 None:intergenic 30.0%
!!! TTTTCAGGTTTAACATGTCA+TGG + chr1_4:29248040-29248059 None:intergenic 30.0%
! TTAAACCTGAAAAGTTTTGC+AGG - chr1_4:29248047-29248066 Msa0159240:intron 30.0%
! TAAACCTGAAAAGTTTTGCA+GGG - chr1_4:29248048-29248067 Msa0159240:intron 30.0%
GAACTGTATATAAATTGCGT+AGG - chr1_4:29248400-29248419 Msa0159240:intron 30.0%
TATTACTAGAGATAGGTGTT+TGG - chr1_4:29248553-29248572 Msa0159240:intron 30.0%
TGCAACATGTAATATGGTAT+TGG + chr1_4:29248698-29248717 None:intergenic 30.0%
AAATTTGTAACAAACTGTCC+AGG - chr1_4:29248791-29248810 Msa0159240:CDS 30.0%
!! GAGTTCACCTTTTATTTCAT+TGG - chr1_4:29249029-29249048 Msa0159240:intron 30.0%
! TCTGAAATAATAAGTAACCG+TGG - chr1_4:29249287-29249306 Msa0159240:intron 30.0%
! TGTGTGCATGGATTAATTAT+TGG - chr1_4:29249376-29249395 Msa0159240:CDS 30.0%
TCAGATTACATAACCATAAC+TGG + chr1_4:29249508-29249527 None:intergenic 30.0%
TACAAACCAAACCAAACCTT+TGG + chr1_4:29244333-29244352 None:intergenic 35.0%
!! AGGTTTGGTTTGGTTTGTAA+TGG - chr1_4:29244334-29244353 Msa0159240:three_prime_UTR 35.0%
!! TTGGTTTGGTTTGTAATGGA+TGG - chr1_4:29244338-29244357 Msa0159240:three_prime_UTR 35.0%
!! TGAAATGGGTTGAACAAGAA+TGG + chr1_4:29244468-29244487 None:intergenic 35.0%
!! AGTTGATGACAACGTGAAAT+GGG + chr1_4:29244482-29244501 None:intergenic 35.0%
ACAAGTAGCATTCATTGCTT+TGG + chr1_4:29244639-29244658 None:intergenic 35.0%
!! AACACTGAATATTGACTTGC+TGG + chr1_4:29244727-29244746 None:intergenic 35.0%
AGCAAGTCAATATTCAGTGT+TGG - chr1_4:29244726-29244745 Msa0159240:intron 35.0%
TCAACTTTGACAAGCAAAAC+AGG + chr1_4:29244835-29244854 None:intergenic 35.0%
AAAGTTGAACAACAACCCAA+TGG - chr1_4:29244847-29244866 Msa0159240:CDS 35.0%
! ATTTCCTGCAGATTTTGTCA+AGG - chr1_4:29245190-29245209 Msa0159240:intron 35.0%
AAATCCTTGACAAAATCTGC+AGG + chr1_4:29245197-29245216 None:intergenic 35.0%
! GCAGATTTTGTCAAGGATTT+AGG - chr1_4:29245197-29245216 Msa0159240:intron 35.0%
! GCAAAATTTTTACCAAAGCC+TGG + chr1_4:29245243-29245262 None:intergenic 35.0%
ATTTAGCAAACAATCAGTGG+CGG + chr1_4:29245326-29245345 None:intergenic 35.0%
GAGATTTAGCAAACAATCAG+TGG + chr1_4:29245329-29245348 None:intergenic 35.0%
TCAAGGAAAACATGCAGTAA+GGG + chr1_4:29245468-29245487 None:intergenic 35.0%
! CATGTTTTCCTTGACTGTTA+CGG - chr1_4:29245474-29245493 Msa0159240:intron 35.0%
AATGTGAATGTAGCTAAGGA+TGG - chr1_4:29245586-29245605 Msa0159240:intron 35.0%
AATGTAGCTAAGGATGGTTA+CGG - chr1_4:29245592-29245611 Msa0159240:intron 35.0%
TACTTCTTGAGTAAACATGG+AGG + chr1_4:29245640-29245659 None:intergenic 35.0%
CTCTACTTCTTGAGTAAACA+TGG + chr1_4:29245643-29245662 None:intergenic 35.0%
CATGTTTACTCAAGAAGTAG+AGG - chr1_4:29245641-29245660 Msa0159240:intron 35.0%
! CTTTTTCCCTTTCTCAGAAA+GGG + chr1_4:29245680-29245699 None:intergenic 35.0%
! ATGTGGTAATGCAGCTATAA+TGG - chr1_4:29245767-29245786 Msa0159240:intron 35.0%
CACATCAGACACTATAATTG+AGG - chr1_4:29245842-29245861 Msa0159240:intron 35.0%
ATCAGACACTATAATTGAGG+TGG - chr1_4:29245845-29245864 Msa0159240:intron 35.0%
ACAAACCTGTGACATAAAAC+GGG + chr1_4:29246059-29246078 None:intergenic 35.0%
TGAAATAAGCTGTAAGGGTT+TGG - chr1_4:29246134-29246153 Msa0159240:intron 35.0%
ATAGAGATTAACACGGGTAA+TGG - chr1_4:29246214-29246233 Msa0159240:intron 35.0%
CTCATCATTGTACTAGTGAA+AGG + chr1_4:29246256-29246275 None:intergenic 35.0%
! AAGTCTTTATTTCCTCCCTT+TGG + chr1_4:29246412-29246431 None:intergenic 35.0%
ACAAAGAGATTGGAATCACA+TGG + chr1_4:29246519-29246538 None:intergenic 35.0%
AACAAATTACAAAGGGGTAG+AGG - chr1_4:29246608-29246627 Msa0159240:intron 35.0%
TTAGTGTATAAAAGAGGGCA+AGG + chr1_4:29246745-29246764 None:intergenic 35.0%
! GGAGCTTTAGTGTATAAAAG+AGG + chr1_4:29246751-29246770 None:intergenic 35.0%
!!! GTTTTGGTCTTATGTTAAGG+GGG + chr1_4:29246772-29246791 None:intergenic 35.0%
ATGGACATGGTTGAGTAAAT+AGG + chr1_4:29247018-29247037 None:intergenic 35.0%
! TTTGTAGTTGGCAATTTTGC+TGG + chr1_4:29247092-29247111 None:intergenic 35.0%
! GGTCAGTATTTTATGTTCCA+GGG + chr1_4:29247502-29247521 None:intergenic 35.0%
! TGGTCAGTATTTTATGTTCC+AGG + chr1_4:29247503-29247522 None:intergenic 35.0%
GGAACATAAAATACTGACCA+AGG - chr1_4:29247503-29247522 Msa0159240:intron 35.0%
GATTGAAACGAAATCAACCT+TGG + chr1_4:29247523-29247542 None:intergenic 35.0%
!!! ATTTTAGCTGCAATCGTGAT+AGG - chr1_4:29247609-29247628 Msa0159240:intron 35.0%
ACTAGTAGAAAGATTCAGCT+GGG - chr1_4:29248217-29248236 Msa0159240:intron 35.0%
! GTCAGCTTTTACACAAATAC+TGG - chr1_4:29248299-29248318 Msa0159240:intron 35.0%
ACTCTTATCTAGATCATGAG+AGG - chr1_4:29248760-29248779 Msa0159240:CDS 35.0%
TTATCTAGATCATGAGAGGA+TGG - chr1_4:29248764-29248783 Msa0159240:CDS 35.0%
TATCTAGATCATGAGAGGAT+GGG - chr1_4:29248765-29248784 Msa0159240:CDS 35.0%
GAATATGTGAGGGTTAATAG+TGG - chr1_4:29248834-29248853 Msa0159240:CDS 35.0%
CTATTGTAGAACCATAACTC+TGG + chr1_4:29249112-29249131 None:intergenic 35.0%
TTGTGAAAGATTATCAAGCC+TGG - chr1_4:29249221-29249240 Msa0159240:CDS 35.0%
TGTGAAAGATTATCAAGCCT+GGG - chr1_4:29249222-29249241 Msa0159240:CDS 35.0%
GATTCACAAACTCTGTACAT+TGG - chr1_4:29249554-29249573 Msa0159240:five_prime_UTR 35.0%
AGCCAAGACAAAACAAGAGA+AGG - chr1_4:29244407-29244426 Msa0159240:three_prime_UTR 40.0%
!!! GACCTTCTCTTGTTTTGTCT+TGG + chr1_4:29244412-29244431 None:intergenic 40.0%
!! GAGTTGATGACAACGTGAAA+TGG + chr1_4:29244483-29244502 None:intergenic 40.0%
GAACAGAAACAGACTCCTTA+CGG + chr1_4:29244574-29244593 None:intergenic 40.0%
AGCTTAATGCAACAGCCATT+GGG + chr1_4:29244865-29244884 None:intergenic 40.0%
CATTAAGCTCTTATCCTGCA+AGG - chr1_4:29244876-29244895 Msa0159240:CDS 40.0%
GTCAGTAGTATTGTTTGCAG+TGG - chr1_4:29245024-29245043 Msa0159240:intron 40.0%
AGTAGTATTGTTTGCAGTGG+CGG - chr1_4:29245027-29245046 Msa0159240:intron 40.0%
CTCAAAGTTGTAGTAATGGC+TGG + chr1_4:29245117-29245136 None:intergenic 40.0%
! ACAACTTTGAGCTTTTCCTG+CGG - chr1_4:29245126-29245145 Msa0159240:intron 40.0%
! GGATTTACCTGCGGATTTTT+GGG - chr1_4:29245147-29245166 Msa0159240:intron 40.0%
AATTTAGCCCAAAAATCCGC+AGG + chr1_4:29245157-29245176 None:intergenic 40.0%
!! ATTTTTGGGCTAAATTCCGC+AGG - chr1_4:29245161-29245180 Msa0159240:intron 40.0%
TAAATCCGCAGGTAAAGACT+GGG + chr1_4:29245265-29245284 None:intergenic 40.0%
CCAGAAAATTTACAGAGCCT+GGG + chr1_4:29245301-29245320 None:intergenic 40.0%
ATCGAATCTCGGTCATTAGT+TGG - chr1_4:29245358-29245377 Msa0159240:intron 40.0%
AGATCAGACAACTCGTATCA+TGG + chr1_4:29245427-29245446 None:intergenic 40.0%
GTCAAGGAAAACATGCAGTA+AGG + chr1_4:29245469-29245488 None:intergenic 40.0%
! TGTATCGCGAGTCTACATTT+TGG + chr1_4:29245509-29245528 None:intergenic 40.0%
TGTAGACTCGCGATACAAAA+AGG - chr1_4:29245512-29245531 Msa0159240:intron 40.0%
GTAGACTCGCGATACAAAAA+GGG - chr1_4:29245513-29245532 Msa0159240:intron 40.0%
! CCTTTTTCCCTTTCTCAGAA+AGG + chr1_4:29245681-29245700 None:intergenic 40.0%
! CCTTTCTGAGAAAGGGAAAA+AGG - chr1_4:29245678-29245697 Msa0159240:intron 40.0%
ATGCAGCTATAATGGTGAAC+CGG - chr1_4:29245775-29245794 Msa0159240:intron 40.0%
! AGTCACTTTCACACGATATC+CGG + chr1_4:29245797-29245816 None:intergenic 40.0%
AAGTGACTCAGATAAGTCAC+TGG - chr1_4:29245809-29245828 Msa0159240:intron 40.0%
TGCATTGCTATGTCGAATTC+AGG - chr1_4:29245934-29245953 Msa0159240:intron 40.0%
!! GGTATTGCTTTGAAAGCGAA+AGG + chr1_4:29245974-29245993 None:intergenic 40.0%
! GCTGATTCAATTGCTTGCTT+TGG + chr1_4:29245995-29246014 None:intergenic 40.0%
AAGCAAGCAATTGAATCAGC+TGG - chr1_4:29245995-29246014 Msa0159240:intron 40.0%
AGCAAGCAATTGAATCAGCT+GGG - chr1_4:29245996-29246015 Msa0159240:intron 40.0%
CAAACCTGTGACATAAAACG+GGG + chr1_4:29246058-29246077 None:intergenic 40.0%
! CTGTAAGGGTTTGGACTTTT+GGG - chr1_4:29246143-29246162 Msa0159240:intron 40.0%
GATCTTTGTACAAGCCTAAG+AGG - chr1_4:29246365-29246384 Msa0159240:intron 40.0%
TGGAATGACTTCTTCCTCTT+AGG + chr1_4:29246382-29246401 None:intergenic 40.0%
TCATTCCAAACAGTGCCAAA+GGG - chr1_4:29246394-29246413 Msa0159240:intron 40.0%
GCAGTGTAAGGAATGAGAAA+GGG + chr1_4:29246452-29246471 None:intergenic 40.0%
AGCAGTGTAAGGAATGAGAA+AGG + chr1_4:29246453-29246472 None:intergenic 40.0%
TTGGAATCACATGGAATGAG+AGG + chr1_4:29246510-29246529 None:intergenic 40.0%
CAGATATCTCAAGGATTAGG+TGG + chr1_4:29246811-29246830 None:intergenic 40.0%
! AAGACTAAGCGTCTCACTTT+TGG + chr1_4:29246880-29246899 None:intergenic 40.0%
TTTCGGTAAATCACCGTGTT+AGG + chr1_4:29247326-29247345 None:intergenic 40.0%
CAACTGGCATTCTAACCTAT+AGG - chr1_4:29247359-29247378 Msa0159240:intron 40.0%
AGATAGGATACGTTGTCTGA+AGG + chr1_4:29247836-29247855 None:intergenic 40.0%
TGGATAGGGATATGATGACT+TGG + chr1_4:29247909-29247928 None:intergenic 40.0%
! GATATTGCATGTGCTACTCA+TGG + chr1_4:29247929-29247948 None:intergenic 40.0%
TATTCATGTCATCCTCTGGA+AGG - chr1_4:29248001-29248020 Msa0159240:intron 40.0%
GGAGATAAATATCCTTCCAG+AGG + chr1_4:29248016-29248035 None:intergenic 40.0%
TCAGGTTTAACATGTCATGG+TGG + chr1_4:29248037-29248056 None:intergenic 40.0%
! CTGAAAAGTTTTGCAGGGAA+GGG - chr1_4:29248053-29248072 Msa0159240:intron 40.0%
!!! GGTTGGCAGTGTTTTGTTTA+AGG + chr1_4:29248102-29248121 None:intergenic 40.0%
AGAGATGCTTCATAGAAGCT+AGG + chr1_4:29248164-29248183 None:intergenic 40.0%
GACTAGTAGAAAGATTCAGC+TGG - chr1_4:29248216-29248235 Msa0159240:intron 40.0%
TACTGGAATGAACGAAAGAG+TGG - chr1_4:29248316-29248335 Msa0159240:intron 40.0%
ACTGGAATGAACGAAAGAGT+GGG - chr1_4:29248317-29248336 Msa0159240:intron 40.0%
TACTAGAGATAGGTGTTTGG+TGG - chr1_4:29248556-29248575 Msa0159240:intron 40.0%
ATTGGCATTATCGCAGATGA+TGG + chr1_4:29248588-29248607 None:intergenic 40.0%
ATCTAGATCATGAGAGGATG+GGG - chr1_4:29248766-29248785 Msa0159240:CDS 40.0%
TTTGTAACAAACTGTCCAGG+TGG - chr1_4:29248794-29248813 Msa0159240:CDS 40.0%
AGTAAGCATGGGAATATGTG+AGG - chr1_4:29248823-29248842 Msa0159240:CDS 40.0%
GTAAGCATGGGAATATGTGA+GGG - chr1_4:29248824-29248843 Msa0159240:CDS 40.0%
! ATGTGAGGGTTAATAGTGGA+AGG - chr1_4:29248838-29248857 Msa0159240:CDS 40.0%
! TGTGAGGGTTAATAGTGGAA+GGG - chr1_4:29248839-29248858 Msa0159240:CDS 40.0%
! ATAGTGGAAGGGAATTGAGA+AGG - chr1_4:29248850-29248869 Msa0159240:CDS 40.0%
TAGTGGAAGGGAATTGAGAA+GGG - chr1_4:29248851-29248870 Msa0159240:CDS 40.0%
AGAAGGGTAGGCTGTTTATT+AGG - chr1_4:29248867-29248886 Msa0159240:intron 40.0%
GGTAAATGTATGGAGCCATT+TGG - chr1_4:29248888-29248907 Msa0159240:intron 40.0%
! ATACTTGCTGACTACAGTAG+CGG - chr1_4:29249083-29249102 Msa0159240:CDS 40.0%
TAGGACAAATCGATAGCGTA+AGG - chr1_4:29249437-29249456 Msa0159240:CDS 40.0%
AGGACAAATCGATAGCGTAA+GGG - chr1_4:29249438-29249457 Msa0159240:CDS 40.0%
! CTCTGTACATTGGTGATAGT+TGG - chr1_4:29249564-29249583 Msa0159240:five_prime_UTR 40.0%
!! TGGTGATAGTTGGCTGTTTT+TGG - chr1_4:29249574-29249593 Msa0159240:five_prime_UTR 40.0%
!!! TGATAGTTGGCTGTTTTTGG+TGG - chr1_4:29249577-29249596 Msa0159240:five_prime_UTR 40.0%
!!! GTTTTGTCTTGGCTTGTGTG+TGG + chr1_4:29244401-29244420 None:intergenic 45.0%
GACAAAACAAGAGAAGGTCG+AGG - chr1_4:29244413-29244432 Msa0159240:three_prime_UTR 45.0%
ACAAGAGAAGGTCGAGGAAT+TGG - chr1_4:29244419-29244438 Msa0159240:three_prime_UTR 45.0%
CAAGAGAAGGTCGAGGAATT+GGG - chr1_4:29244420-29244439 Msa0159240:three_prime_UTR 45.0%
AATTGGGATGGCTTCGTCAT+TGG - chr1_4:29244436-29244455 Msa0159240:three_prime_UTR 45.0%
TTGCTGAAGCAAGAAGTGGA+AGG + chr1_4:29244514-29244533 None:intergenic 45.0%
ACTACTTACTTAGGGGACGT+TGG + chr1_4:29244604-29244623 None:intergenic 45.0%
! ATTCAGTGTTGGACGCTGAA+AGG - chr1_4:29244737-29244756 Msa0159240:intron 45.0%
AAGGATTGAACGTGTGAGTG+AGG - chr1_4:29244756-29244775 Msa0159240:intron 45.0%
GTGTGAGTGAGGATACATTC+AGG - chr1_4:29244767-29244786 Msa0159240:intron 45.0%
GAGCTTAATGCAACAGCCAT+TGG + chr1_4:29244866-29244885 None:intergenic 45.0%
AAGCTCTTATCCTGCAAGGT+AGG - chr1_4:29244880-29244899 Msa0159240:intron 45.0%
AAAGTAGGTACCTACCTTGC+AGG + chr1_4:29244893-29244912 None:intergenic 45.0%
GCTCAGAACGACAAGTTTGA+TGG - chr1_4:29245002-29245021 Msa0159240:intron 45.0%
TCCAACTTCCCTTTGTAGTC+AGG - chr1_4:29245091-29245110 Msa0159240:intron 45.0%
! TTTTCCTGCGGATTTACCTG+CGG - chr1_4:29245138-29245157 Msa0159240:intron 45.0%
! CGGATTTACCTGCGGATTTT+TGG - chr1_4:29245146-29245165 Msa0159240:intron 45.0%
TGCAGGAAATGTGTTTCCTG+CGG + chr1_4:29245180-29245199 None:intergenic 45.0%
! ATTTCCTGCAGATTTTGCCC+AGG - chr1_4:29245222-29245241 Msa0159240:intron 45.0%
! TTTTGCCCAGTCTTTACCTG+CGG - chr1_4:29245257-29245276 Msa0159240:intron 45.0%
GTAAATCCGCAGGTAAAGAC+TGG + chr1_4:29245266-29245285 None:intergenic 45.0%
TAATCTGCAGGTAAATCCGC+AGG + chr1_4:29245276-29245295 None:intergenic 45.0%
TTTACCTGCAGATTATGCCC+AGG - chr1_4:29245281-29245300 Msa0159240:intron 45.0%
! CCCAGGCTCTGTAAATTTTC+TGG - chr1_4:29245298-29245317 Msa0159240:intron 45.0%
GCCAGAAAATTTACAGAGCC+TGG + chr1_4:29245302-29245321 None:intergenic 45.0%
CAGTAAGGGATCTCGATAGT+TGG + chr1_4:29245454-29245473 None:intergenic 45.0%
CGTAGATTCCGTAACAGTCA+AGG + chr1_4:29245485-29245504 None:intergenic 45.0%
! TCTCGTTCCCTTTCTGAGAA+AGG - chr1_4:29245670-29245689 Msa0159240:intron 45.0%
! CTCGTTCCCTTTCTGAGAAA+GGG - chr1_4:29245671-29245690 Msa0159240:intron 45.0%
! GCTGTAAGGGTTTGGACTTT+TGG - chr1_4:29246142-29246161 Msa0159240:intron 45.0%
GTCATTCCAAACAGTGCCAA+AGG - chr1_4:29246393-29246412 Msa0159240:intron 45.0%
ACTAAAGCTCTCACATACGC+AGG - chr1_4:29246680-29246699 Msa0159240:intron 45.0%
CTAAAGCTCTCACATACGCA+GGG - chr1_4:29246681-29246700 Msa0159240:intron 45.0%
GCGTACAATACACCAATGGT+GGG + chr1_4:29246720-29246739 None:intergenic 45.0%
TGCGTACAATACACCAATGG+TGG + chr1_4:29246721-29246740 None:intergenic 45.0%
GGTTGCGTACAATACACCAA+TGG + chr1_4:29246724-29246743 None:intergenic 45.0%
GGTGCCAAACAGATATCTCA+AGG + chr1_4:29246820-29246839 None:intergenic 45.0%
AAAGTGCAAGTGCAACCTGT+GGG + chr1_4:29246972-29246991 None:intergenic 45.0%
TTTACACACATGAGGGTCTG+TGG - chr1_4:29247171-29247190 Msa0159240:intron 45.0%
CTTTGCTTTCGCACCTAACA+CGG - chr1_4:29247310-29247329 Msa0159240:intron 45.0%
GTTAGAATGCCAGTTGCTGT+TGG + chr1_4:29247355-29247374 None:intergenic 45.0%
ACTTGTCTGACTGATATCCC+TGG - chr1_4:29247482-29247501 Msa0159240:intron 45.0%
! GCATGTGCTACTCATGGATA+GGG + chr1_4:29247923-29247942 None:intergenic 45.0%
! TGCATGTGCTACTCATGGAT+AGG + chr1_4:29247924-29247943 None:intergenic 45.0%
GATACAGATTCTCATCGTCC+TGG - chr1_4:29247953-29247972 Msa0159240:CDS 45.0%
! GTGCTATTCATGTCATCCTC+TGG - chr1_4:29247997-29248016 Msa0159240:intron 45.0%
! CCTTCCCTGCAAAACTTTTC+AGG + chr1_4:29248055-29248074 None:intergenic 45.0%
! CCTGAAAAGTTTTGCAGGGA+AGG - chr1_4:29248052-29248071 Msa0159240:intron 45.0%
TAACAAACTGTCCAGGTGGA+TGG - chr1_4:29248798-29248817 Msa0159240:CDS 45.0%
ATGCTTACTAACCATCCACC+TGG + chr1_4:29248812-29248831 None:intergenic 45.0%
AGGTGGATGGTTAGTAAGCA+TGG - chr1_4:29248811-29248830 Msa0159240:CDS 45.0%
GGTGGATGGTTAGTAAGCAT+GGG - chr1_4:29248812-29248831 Msa0159240:CDS 45.0%
ATGTATGGAGCCATTTGGCT+AGG - chr1_4:29248893-29248912 Msa0159240:intron 45.0%
TGTATGGAGCCATTTGGCTA+GGG - chr1_4:29248894-29248913 Msa0159240:intron 45.0%
TACTGTGTGCGTCACTAAGA+GGG + chr1_4:29248930-29248949 None:intergenic 45.0%
ATAAGTAACCGTGGTTGCAC+TGG - chr1_4:29249296-29249315 Msa0159240:intron 45.0%
GGACAAATCGATAGCGTAAG+GGG - chr1_4:29249439-29249458 Msa0159240:CDS 45.0%
GACAAATCGATAGCGTAAGG+GGG - chr1_4:29249440-29249459 Msa0159240:CDS 45.0%
CGTAAGGGGGTTGTAAATCA+AGG - chr1_4:29249453-29249472 Msa0159240:CDS 45.0%
!! TGTCTTGGCTTGTGTGTGGA+TGG + chr1_4:29244397-29244416 None:intergenic 50.0%
AGAAGGTCGAGGAATTGGGA+TGG - chr1_4:29244424-29244443 Msa0159240:three_prime_UTR 50.0%
!! CAAGAAGTGGAAGGCGTTGT+TGG + chr1_4:29244505-29244524 None:intergenic 50.0%
GGAGTTGCTGAAGCAAGAAG+TGG + chr1_4:29244518-29244537 None:intergenic 50.0%
! AGCAACGAAACGGGCTTTGT+GGG + chr1_4:29244549-29244568 None:intergenic 50.0%
GCCTGACTACAAAGGGAAGT+TGG + chr1_4:29245095-29245114 None:intergenic 50.0%
!! ATGGCTGGCCTGACTACAAA+GGG + chr1_4:29245102-29245121 None:intergenic 50.0%
!! AATGGCTGGCCTGACTACAA+AGG + chr1_4:29245103-29245122 None:intergenic 50.0%
AAATCCGCAGGTAAATCCGC+AGG + chr1_4:29245145-29245164 None:intergenic 50.0%
AAAGCCTGGGCAAAATCTGC+AGG + chr1_4:29245229-29245248 None:intergenic 50.0%
! TGCAGATTTTGCCCAGGCTT+TGG - chr1_4:29245228-29245247 Msa0159240:intron 50.0%
! GCTTCCCCGTTTTATGTCAC+AGG - chr1_4:29246051-29246070 Msa0159240:intron 50.0%
TTCCAAACAGTGCCAAAGGG+AGG - chr1_4:29246397-29246416 Msa0159240:intron 50.0%
TTCCTCCCTTTGGCACTGTT+TGG + chr1_4:29246402-29246421 None:intergenic 50.0%
AGACCAAAAAAAGGGCAGCC+TGG - chr1_4:29246654-29246673 Msa0159240:intron 50.0%
! TGTGAGAGCTTTAGTGCACC+AGG + chr1_4:29246675-29246694 None:intergenic 50.0%
AAGTGCAAGTGCAACCTGTG+GGG + chr1_4:29246971-29246990 None:intergenic 50.0%
CAAAGTGCAAGTGCAACCTG+TGG + chr1_4:29246973-29246992 None:intergenic 50.0%
CACAGGTTGCACTTGCACTT+TGG - chr1_4:29246971-29246990 Msa0159240:intron 50.0%
GTTGCACTTGCACTTTGGCA+TGG - chr1_4:29246976-29246995 Msa0159240:intron 50.0%
CGTGTTAGGTGCGAAAGCAA+AGG + chr1_4:29247312-29247331 None:intergenic 50.0%
!! GTTGCTGTTGGAGGGGTTTT+CGG + chr1_4:29247343-29247362 None:intergenic 50.0%
AAAACCCCTCCAACAGCAAC+TGG - chr1_4:29247343-29247362 Msa0159240:intron 50.0%
! AATGCCAGTTGCTGTTGGAG+GGG + chr1_4:29247350-29247369 None:intergenic 50.0%
! GAATGCCAGTTGCTGTTGGA+GGG + chr1_4:29247351-29247370 None:intergenic 50.0%
! AGAATGCCAGTTGCTGTTGG+AGG + chr1_4:29247352-29247371 None:intergenic 50.0%
GTAGGGTTGAGATCAAACGC+TGG - chr1_4:29248418-29248437 Msa0159240:intron 50.0%
GGAAGGGAATTGAGAAGGGT+AGG - chr1_4:29248855-29248874 Msa0159240:CDS 50.0%
GTACTGTGTGCGTCACTAAG+AGG + chr1_4:29248931-29248950 None:intergenic 50.0%
! TTGCCTTGAGGCATTTCCAG+AGG + chr1_4:29249248-29249267 None:intergenic 50.0%
AATGCCTCAAGGCAACCTCT+TGG - chr1_4:29249253-29249272 Msa0159240:intron 50.0%
ATGCCTCAAGGCAACCTCTT+GGG - chr1_4:29249254-29249273 Msa0159240:intron 50.0%
CAGATTTCACCTGTCCCAAG+AGG + chr1_4:29249271-29249290 None:intergenic 50.0%
! TGCTGCTTGTAGTGTGTGCA+TGG - chr1_4:29249364-29249383 Msa0159240:CDS 50.0%
GGCTTGTGTGTGGATGGATG+TGG + chr1_4:29244391-29244410 None:intergenic 55.0%
! AAACGGGCTTTGTGGGTCGA+AGG + chr1_4:29244542-29244561 None:intergenic 55.0%
! GAGCAACGAAACGGGCTTTG+TGG + chr1_4:29244550-29244569 None:intergenic 55.0%
CTTACGGCGAGCAACGAAAC+GGG + chr1_4:29244558-29244577 None:intergenic 55.0%
CCTTACGGCGAGCAACGAAA+CGG + chr1_4:29244559-29244578 None:intergenic 55.0%
ACAGCTTCAGGGTTCCCCTA+TGG - chr1_4:29244974-29244993 Msa0159240:intron 55.0%
! GTTCTGAGCAGCGACCATAG+GGG + chr1_4:29244991-29245010 None:intergenic 55.0%
! CGTTCTGAGCAGCGACCATA+GGG + chr1_4:29244992-29245011 None:intergenic 55.0%
! TCGTTCTGAGCAGCGACCAT+AGG + chr1_4:29244993-29245012 None:intergenic 55.0%
AGAGCCTGGGCATAATCTGC+AGG + chr1_4:29245288-29245307 None:intergenic 55.0%
! TGAGAGGTGTGTGCGAGGAA+GGG + chr1_4:29246494-29246513 None:intergenic 55.0%
! ATGAGAGGTGTGTGCGAGGA+AGG + chr1_4:29246495-29246514 None:intergenic 55.0%
! TGGAATGAGAGGTGTGTGCG+AGG + chr1_4:29246499-29246518 None:intergenic 55.0%
!!! GCACCAGGCTGCCCTTTTTT+TGG + chr1_4:29246660-29246679 None:intergenic 55.0%
ACATACGCAGGGTCCGAGAA+GGG - chr1_4:29246692-29246711 Msa0159240:intron 55.0%
TTCTAACCGAATGCCCCCAC+AGG - chr1_4:29246954-29246973 Msa0159240:intron 55.0%
AGTGCAAGTGCAACCTGTGG+GGG + chr1_4:29246970-29246989 None:intergenic 55.0%
ATGGAGCCATTTGGCTAGGG+AGG - chr1_4:29248897-29248916 Msa0159240:intron 55.0%
CTGCAACCTCCCTAGCCAAA+TGG + chr1_4:29248906-29248925 None:intergenic 55.0%
! CTTGCTGACTACAGTAGCGG+TGG - chr1_4:29249086-29249105 Msa0159240:CDS 55.0%
AGTAGCGGTGGCCAGAGTTA+TGG - chr1_4:29249098-29249117 Msa0159240:CDS 55.0%
GATTATCAAGCCTGGGCCTC+TGG - chr1_4:29249229-29249248 Msa0159240:CDS 55.0%
TGTCCCAAGAGGTTGCCTTG+AGG + chr1_4:29249260-29249279 None:intergenic 55.0%
TCAAGGCAACCTCTTGGGAC+AGG - chr1_4:29249259-29249278 Msa0159240:intron 55.0%
CCGTTTCGTTGCTCGCCGTA+AGG - chr1_4:29244556-29244575 Msa0159240:three_prime_UTR 60.0%
GGGAAGTTGGAGCTGAGCCT+GGG + chr1_4:29245082-29245101 None:intergenic 60.0%
AGGGAAGTTGGAGCTGAGCC+TGG + chr1_4:29245083-29245102 None:intergenic 60.0%
GTGCGAGGAAGGGACACACA+TGG + chr1_4:29246484-29246503 None:intergenic 60.0%
CACATACGCAGGGTCCGAGA+AGG - chr1_4:29246691-29246710 Msa0159240:intron 60.0%
CATACGCAGGGTCCGAGAAG+GGG - chr1_4:29246693-29246712 Msa0159240:intron 60.0%
! CCAATGGTGGGACCCCTTCT+CGG + chr1_4:29246708-29246727 None:intergenic 60.0%
!! GTGCAACCTGTGGGGGCATT+CGG + chr1_4:29246963-29246982 None:intergenic 60.0%
! TGAGGCATTTCCAGAGGCCC+AGG + chr1_4:29249242-29249261 None:intergenic 60.0%
! GGGCCTCTGGAAATGCCTCA+AGG - chr1_4:29249242-29249261 Msa0159240:intron 60.0%
! AACCGTGGTTGCACTGGTGC+TGG - chr1_4:29249302-29249321 Msa0159240:intron 60.0%
AGCCAGCACCAGTGCAACCA+CGG + chr1_4:29249307-29249326 None:intergenic 60.0%
! CGGGCTTTGTGGGTCGAAGG+AGG + chr1_4:29244539-29244558 None:intergenic 65.0%
! ATCCACCCCCCAGCTAGCCT+GGG - chr1_4:29245050-29245069 Msa0159240:intron 65.0%
CCGAGAAGGGGTCCCACCAT+TGG - chr1_4:29246705-29246724 Msa0159240:intron 65.0%
GATCCACCCCCCAGCTAGCC+TGG - chr1_4:29245049-29245068 Msa0159240:intron 70.0%
! ACCAGCCCAGGCTAGCTGGG+GGG + chr1_4:29245058-29245077 None:intergenic 70.0%
! CACCAGCCCAGGCTAGCTGG+GGG + chr1_4:29245059-29245078 None:intergenic 70.0%
! GCACCAGCCCAGGCTAGCTG+GGG + chr1_4:29245060-29245079 None:intergenic 70.0%
! GGCACCAGCCCAGGCTAGCT+GGG + chr1_4:29245061-29245080 None:intergenic 70.0%
! AGCCCAGGCTAGCTGGGGGG+TGG + chr1_4:29245055-29245074 None:intergenic 75.0%
! ACCCCCCAGCTAGCCTGGGC+TGG - chr1_4:29245054-29245073 Msa0159240:intron 75.0%
GGGCACCAGCCCAGGCTAGC+TGG + chr1_4:29245062-29245081 None:intergenic 75.0%
!! GCTAGCCTGGGCTGGTGCCC+AGG - chr1_4:29245062-29245081 Msa0159240:intron 75.0%
CTGAGCCTGGGCACCAGCCC+AGG + chr1_4:29245070-29245089 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 29244326 29249632 29244326 ID=Msa0159240;Name=Msa0159240
chr1_4 mRNA 29244326 29249632 29244326 ID=Msa0159240-mRNA-1;Parent=Msa0159240;Name=Msa0159240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=117|0.57|0.75|0.87|1|1|8|341|291
chr1_4 exon 29244326 29244738 29244326 ID=Msa0159240-mRNA-1:exon:9484;Parent=Msa0159240-mRNA-1
chr1_4 exon 29244839 29244898 29244839 ID=Msa0159240-mRNA-1:exon:9483;Parent=Msa0159240-mRNA-1
chr1_4 exon 29247886 29248002 29247886 ID=Msa0159240-mRNA-1:exon:9482;Parent=Msa0159240-mRNA-1
chr1_4 exon 29248095 29248177 29248095 ID=Msa0159240-mRNA-1:exon:9481;Parent=Msa0159240-mRNA-1
chr1_4 exon 29248740 29248874 29248740 ID=Msa0159240-mRNA-1:exon:9480;Parent=Msa0159240-mRNA-1
chr1_4 exon 29248935 29248980 29248935 ID=Msa0159240-mRNA-1:exon:9479;Parent=Msa0159240-mRNA-1
chr1_4 exon 29249061 29249251 29249061 ID=Msa0159240-mRNA-1:exon:9478;Parent=Msa0159240-mRNA-1
chr1_4 exon 29249344 29249632 29249344 ID=Msa0159240-mRNA-1:exon:9477;Parent=Msa0159240-mRNA-1
chr1_4 five_prime_UTR 29249516 29249632 29249516 ID=Msa0159240-mRNA-1:five_prime_utr;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29249344 29249515 29249344 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29249061 29249251 29249061 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29248935 29248980 29248935 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29248740 29248874 29248740 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29248095 29248177 29248095 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29247886 29248002 29247886 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29244839 29244898 29244839 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 CDS 29244667 29244738 29244667 ID=Msa0159240-mRNA-1:cds;Parent=Msa0159240-mRNA-1
chr1_4 three_prime_UTR 29244326 29244666 29244326 ID=Msa0159240-mRNA-1:three_prime_utr;Parent=Msa0159240-mRNA-1
Gene Sequence

>Msa0159240

ATGGCTTCGTCATTGGTTAGTTCCATTCTTGTTCAACCCATTTCACGTTGTCATCAACTCCAACAACGCCTTCCACTTCTTGCTTCAGCAACTCCTCCTTCGACCCACAAAGCCCGTTTCGTTGCTCGCCGTAAGGAGTCTGTTTCTGTTCAACAACTCCAACGTCCCCTAATTGAATATATGAGATTACCAGCAAGTCAATATTCAGTGTTGGACGCTGAAAGGATTGAACGTGTGAGTGAGGATACATTCAGGTGTTACGTTTACACAATTAAGTTTTTCACATTTGAGGTTTGTCCTGTTTTGCTTGTCAAAGTTGAACAACAACCCAATGGCTGTTGCATTAAGCTCTTATCCTGCAAGCTTCAGGGTTCCCCTATGGTCGCTGCTCAGAACGACAAGTTTGATGGCTCAGCTCCAACTTCCCTTTGTAGTCAGGCCAGCCATTACTACAACTTTGAGCTTTTCCTGCGGATTTACCTGCGGATTTTTGGGCTAAATTCCGCAGGAAACACATTTCCTGCAGATTTTGTCAAGGATTTAGCTATAATGGTGAACCGGATATCGTGTGAAAGTGACTCAGATAAGTCACTGGTGCAGCAACTCACATCAGACACTATAATTGAGGTAAGCATTGAAATTCCTTTCGCTTTCAAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAAGATTATGCTTCCCCGTTTTATGTCACAGTTCTGTATTACTGCTACTGATACATACTTGCTGACTACAGTAGCGGTGGCCAGAGTTATGCTTGTGAAAGATTATCAAGCCTGGGCCTCTGGAAATGCCTCAAGGCAACCTCTTGGGACAGGTGAAATCTGA

Protein sequence

>Msa0159240

MASSLVSSILVQPISRCHQLQQRLPLLASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPASQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQGSPMVAAQNDKFDGSAPTSLCSQASHYYNFELFLRIYLRIFGLNSAGNTFPADFVKDLAIMVNRISCESDSDKSLVQQLTSDTIIEVSIEIPFAFKAIPKQAIESAGTQVLEQILKIMLPRFMSQFCITATDTYLLTTVAVARVMLVKDYQAWASGNASRQPLGTGEI*