AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588110 MtrunA17_Chr4g0004251 95.686 255 11 0 1 255 1 255 4.02e-178 489
Msa0588110 MtrunA17_Chr2g0323811 32.547 212 134 3 43 251 55 260 2.66e-37 132
Msa0588110 MtrunA17_Chr5g0407481 34.351 131 83 1 124 251 2 132 1.52e-22 90.1
Msa0588110 MtrunA17_Chr2g0323801 31.538 130 82 2 124 251 2 126 1.14e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588110 AT1G04940.1 63.750 240 80 2 22 255 36 274 1.78e-105 307
Msa0588110 AT1G04945.3 60.633 221 80 2 22 236 36 255 6.78e-86 268
Msa0588110 AT4G03320.1 35.000 220 130 5 38 251 59 271 3.67e-40 140

Find 81 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTGGAATGCATTTC+TGG 0.102228 4_2:-10275112 Msa0588110:CDS
TTCACCCTTCATATGGTATT+TGG 0.132090 4_2:+10274985 None:intergenic
TCTCAAGTTTCCGAAGTTTA+TGG 0.173905 4_2:-10277558 Msa0588110:CDS
GATGCCACTGGGGTTCTATT+GGG 0.221927 4_2:-10275135 Msa0588110:CDS
GGATGCCACTGGGGTTCTAT+TGG 0.233429 4_2:-10275136 Msa0588110:CDS
TCAAATTTGTGTCATTATTC+AGG 0.234665 4_2:-10277785 Msa0588110:intron
GGGTTCTATTGGGGTAAAAT+TGG 0.263490 4_2:-10275125 Msa0588110:CDS
GAGATAGCCTTGCAAGTTAC+AGG 0.289946 4_2:-10275173 Msa0588110:CDS
CTTCGCTGCGCAAGTCTTGT+AGG 0.317793 4_2:-10275520 Msa0588110:CDS
CAAACTGATTAGCCATTCTA+TGG 0.327158 4_2:+10274892 None:intergenic
CTCAAGTTTCCGAAGTTTAT+GGG 0.327570 4_2:-10277557 Msa0588110:CDS
TGCGTTAGGTGTGCCCTTAC+TGG 0.339865 4_2:-10275050 Msa0588110:CDS
ACTAGTGATTCAAGCATGAT+TGG 0.342277 4_2:-10277649 Msa0588110:intron
ATCAAATTTATCTGTATTCT+CGG 0.358270 4_2:-10274803 Msa0588110:three_prime_UTR
GGCACACCTAACGCACTCTA+TGG 0.372183 4_2:+10275058 None:intergenic
CTATGGAAGTAAAGAGATAA+AGG 0.374679 4_2:+10275075 None:intergenic
AACTCGAATGCCTCAATAAA+CGG 0.375295 4_2:+10275341 None:intergenic
TACATATTTCACCCTTCATA+TGG 0.376846 4_2:+10274978 None:intergenic
TGTGAGCCGTTGGATGCCAC+TGG 0.406570 4_2:-10275147 Msa0588110:CDS
AGTGTTCTCCACCACCATCT+TGG 0.422947 4_2:+10275434 None:intergenic
TTACTTCCATAGAGTGCGTT+AGG 0.425451 4_2:-10275064 Msa0588110:CDS
TTATCTCTTGCCTATCCATC+AGG 0.444896 4_2:-10275399 Msa0588110:CDS
GATGGATAGGCAAGAGATAA+GGG 0.454516 4_2:+10275402 None:intergenic
CGCTTGTCAAATGCCTGCTA+AGG 0.455039 4_2:-10277587 Msa0588110:CDS
ATGCCACTGGGGTTCTATTG+GGG 0.470377 4_2:-10275134 Msa0588110:CDS
GTGAGCCGTTGGATGCCACT+GGG 0.473897 4_2:-10275146 Msa0588110:CDS
CAATCTTCACCCGTTTATTG+AGG 0.476868 4_2:-10275351 Msa0588110:CDS
ACTCGAATGCCTCAATAAAC+GGG 0.477425 4_2:+10275342 None:intergenic
TCAAATTTATCTGTATTCTC+GGG 0.482206 4_2:-10274802 Msa0588110:three_prime_UTR
TATGCTGCATCACAGACAAA+AGG 0.482262 4_2:+10275011 None:intergenic
TGATGGATAGGCAAGAGATA+AGG 0.482592 4_2:+10275401 None:intergenic
TTCGCTGCGCAAGTCTTGTA+GGG 0.489910 4_2:-10275519 Msa0588110:CDS
TATGAAGGGTGAAATATGTA+AGG 0.493929 4_2:-10274975 Msa0588110:exon
TATATCCAAATACCATATGA+AGG 0.493979 4_2:-10274990 Msa0588110:CDS
ATGAAGGAAGGCTCATCTGC+TGG 0.500226 4_2:-10275485 Msa0588110:CDS
TTCAGATTTCACGTTGCCGT+CGG 0.502375 4_2:-10275206 Msa0588110:CDS
ATATAACTAAAATGTACTCA+AGG 0.510206 4_2:+10274830 None:intergenic
TAGGGCCCCTCGAGCAATGA+AGG 0.513500 4_2:-10275501 Msa0588110:CDS
TGTTAAGCAGAACCATAGAA+TGG 0.514387 4_2:-10274904 Msa0588110:three_prime_UTR
CAATTGGCAGTCTACCTAGA+TGG 0.514868 4_2:-10275295 Msa0588110:CDS
GAGCCTTCCTTCATTGCTCG+AGG 0.525595 4_2:+10275494 None:intergenic
TCAAGCATGATTGGAAATGT+TGG 0.526715 4_2:-10277640 Msa0588110:exon
TATCCGCATACATACCAGTA+AGG 0.527566 4_2:+10275036 None:intergenic
AAGGGTGAAATATGTAAGGA+AGG 0.534388 4_2:-10274971 Msa0588110:exon
GTAACACAAAACAGAACCTT+GGG 0.535984 4_2:+10277609 None:intergenic
AGCCTTCCTTCATTGCTCGA+GGG 0.536520 4_2:+10275495 None:intergenic
ATGCTGCATCACAGACAAAA+GGG 0.543856 4_2:+10275012 None:intergenic
CTACAAGACTTGCGCAGCGA+AGG 0.549633 4_2:+10275521 None:intergenic
TTACAGGGCTTGTGAGCCGT+TGG 0.554372 4_2:-10275157 Msa0588110:CDS
TAGCATACATCCACACCTGA+TGG 0.557726 4_2:+10275384 None:intergenic
CGTAACACAAAACAGAACCT+TGG 0.561329 4_2:+10277608 None:intergenic
TAAAAGTAGGCTTGATGCAG+AGG 0.564259 4_2:+10275586 None:intergenic
CTTGAGACAGAAACCTTAGC+AGG 0.566926 4_2:+10277574 None:intergenic
AGATAGCCTTGCAAGTTACA+GGG 0.572582 4_2:-10275172 Msa0588110:CDS
AAGTATGTCCCCATAAACTT+CGG 0.579692 4_2:+10277548 None:intergenic
TACATCCACACCTGATGGAT+AGG 0.579710 4_2:+10275389 None:intergenic
CCAGAAAACCAAGATGGTGG+TGG 0.582114 4_2:-10275442 Msa0588110:CDS
TATGCTATGAGAGACCATCT+AGG 0.591244 4_2:+10275281 None:intergenic
CACAAGCCCTGTAACTTGCA+AGG 0.594415 4_2:+10275166 None:intergenic
TCAAGTTTCCGAAGTTTATG+GGG 0.594717 4_2:-10277556 Msa0588110:CDS
ACGTGAAATCTGAAGAAATG+AGG 0.595610 4_2:+10275215 None:intergenic
TTGCGCAGCGAAGGTAACAC+AGG 0.597116 4_2:+10275530 None:intergenic
TTGCGTATCTTACCATTGTG+AGG 0.599587 4_2:-10275250 Msa0588110:CDS
GCCTTCCTTCATTGCTCGAG+GGG 0.601540 4_2:+10275496 None:intergenic
TCTTGCCTATCCATCAGGTG+TGG 0.604602 4_2:-10275394 Msa0588110:CDS
TATAACTAAAATGTACTCAA+GGG 0.614178 4_2:+10274831 None:intergenic
GCCCCTCGAGCAATGAAGGA+AGG 0.617175 4_2:-10275497 Msa0588110:CDS
AATGTTGGCACTATATCCCA+AGG 0.625899 4_2:-10277625 Msa0588110:CDS
ATATCCAAATACCATATGAA+GGG 0.626189 4_2:-10274989 Msa0588110:CDS
CGATGACCAGAAAACCAAGA+TGG 0.627736 4_2:-10275448 Msa0588110:CDS
CTCAAGGGAAAATATCAAAG+AGG 0.636624 4_2:+10274846 None:intergenic
AGAACCCCAGTGGCATCCAA+CGG 0.641127 4_2:+10275141 None:intergenic
CCATTGTGAGGAGAAAAGAA+TGG 0.645047 4_2:-10275238 Msa0588110:CDS
TGCCCTTACTGGTATGTATG+CGG 0.645316 4_2:-10275039 Msa0588110:CDS
ATCCGCATACATACCAGTAA+GGG 0.651307 4_2:+10275037 None:intergenic
TGACCAGAAAACCAAGATGG+TGG 0.673799 4_2:-10275445 Msa0588110:CDS
ACTTTAGAGATTAAACCAAG+AGG 0.685569 4_2:-10277529 Msa0588110:intron
TGCGCAGCGAAGGTAACACA+GGG 0.711989 4_2:+10275531 None:intergenic
TATCTCGATTAACATTCCGA+CGG 0.723472 4_2:+10275190 None:intergenic
TGAGCCGTTGGATGCCACTG+GGG 0.729430 4_2:-10275145 Msa0588110:CDS
TTACCCCAATAGAACCCCAG+TGG 0.740833 4_2:+10275131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAATAATAAAAAAAC+TGG - chr4_2:10274966-10274985 Msa0588110:three_prime_UTR 10.0%
!!! TTTTGAATAATAAAAAAACT+GGG - chr4_2:10274967-10274986 Msa0588110:exon 10.0%
!! AATACAATTCATAGAAAAAT+GGG + chr4_2:10274913-10274932 None:intergenic 15.0%
!! AAATACAATTCATAGAAAAA+TGG + chr4_2:10274914-10274933 None:intergenic 15.0%
!! TCAATTTCTCAAATTAATAT+CGG - chr4_2:10275392-10275411 Msa0588110:CDS 15.0%
!! TTTACTAAATATGATACATA+AGG - chr4_2:10276457-10276476 Msa0588110:intron 15.0%
!! TTACTAAATATGATACATAA+GGG - chr4_2:10276458-10276477 Msa0588110:intron 15.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr4_2:10275720-10275739 Msa0588110:intron 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG - chr4_2:10275962-10275981 Msa0588110:intron 20.0%
!! CATAGATATATGAATTAACT+AGG + chr4_2:10276032-10276051 None:intergenic 20.0%
!! ACATACTTTATGTACTAATT+AGG + chr4_2:10276121-10276140 None:intergenic 20.0%
!!! TTCTTTTTTCATGTGTTTTA+TGG - chr4_2:10276294-10276313 Msa0588110:intron 20.0%
!!! TCTTTTTTCATGTGTTTTAT+GGG - chr4_2:10276295-10276314 Msa0588110:intron 20.0%
!! TATTTAGTAAAATTACACCA+AGG + chr4_2:10276448-10276467 None:intergenic 20.0%
!! TACTAAATATGATACATAAG+GGG - chr4_2:10276459-10276478 Msa0588110:intron 20.0%
!! CAAAGATAGTAATATTACAT+AGG + chr4_2:10276562-10276581 None:intergenic 20.0%
!! TATAACTAAAATGTACTCAA+GGG + chr4_2:10277821-10277840 None:intergenic 20.0%
!! ATATAACTAAAATGTACTCA+AGG + chr4_2:10277822-10277841 None:intergenic 20.0%
!! ATCAAATTTATCTGTATTCT+CGG - chr4_2:10277846-10277865 Msa0588110:five_prime_UTR 20.0%
!! TCAAATTTGTGTCATTATTC+AGG - chr4_2:10274864-10274883 Msa0588110:three_prime_UTR 25.0%
!! GGATTTTGTAAAAACAATCA+TGG + chr4_2:10274892-10274911 None:intergenic 25.0%
! GATAAGTTGTTTATCCAAAT+AGG - chr4_2:10275719-10275738 Msa0588110:intron 25.0%
! CGAAAAATTGTCATATACTT+CGG + chr4_2:10275816-10275835 None:intergenic 25.0%
! CCGATAATAATTTGAGAAAA+TGG + chr4_2:10275965-10275984 None:intergenic 25.0%
! ATACTTGAGATTTACTTGAA+TGG + chr4_2:10276088-10276107 None:intergenic 25.0%
!! AGACGAATTTTCATATACTT+CGG + chr4_2:10276196-10276215 None:intergenic 25.0%
!!! GTTAGTTCTTAGGATTTTAA+CGG - chr4_2:10276217-10276236 Msa0588110:intron 25.0%
! AGTAATATTACATAGGAACT+TGG + chr4_2:10276555-10276574 None:intergenic 25.0%
!! CATCCTTGAAAAATTTGTTT+CGG - chr4_2:10276986-10277005 Msa0588110:intron 25.0%
! ATTATCAATCTTTCTGTGAT+AGG - chr4_2:10277020-10277039 Msa0588110:intron 25.0%
!!! TACCCTTTTTTTATGTCAAT+TGG - chr4_2:10277338-10277357 Msa0588110:intron 25.0%
! TGCCAATTGACATAAAAAAA+GGG + chr4_2:10277343-10277362 None:intergenic 25.0%
! TATATCCAAATACCATATGA+AGG - chr4_2:10277659-10277678 Msa0588110:intron 25.0%
! ATATCCAAATACCATATGAA+GGG - chr4_2:10277660-10277679 Msa0588110:intron 25.0%
! ACTTTAGAGATTAAACCAAG+AGG - chr4_2:10275120-10275139 Msa0588110:CDS 30.0%
GTATCTTAACATGTAACTAG+TGG - chr4_2:10275846-10275865 Msa0588110:intron 30.0%
TATGTACTAATTAGGAGACT+GGG + chr4_2:10276113-10276132 None:intergenic 30.0%
TTATGTACTAATTAGGAGAC+TGG + chr4_2:10276114-10276133 None:intergenic 30.0%
GTATGGTGTTTGGTAAAAAA+TGG - chr4_2:10276422-10276441 Msa0588110:intron 30.0%
!!! TGTCACTTTTTAGACTTTTG+AGG - chr4_2:10276512-10276531 Msa0588110:intron 30.0%
! CAATTTTCTCCATCTATTAG+TGG + chr4_2:10276737-10276756 None:intergenic 30.0%
!!! CGAAACAAATTTTTCAAGGA+TGG + chr4_2:10276988-10277007 None:intergenic 30.0%
! AAGCCGAAACAAATTTTTCA+AGG + chr4_2:10276992-10277011 None:intergenic 30.0%
CTGCCAATTGACATAAAAAA+AGG + chr4_2:10277344-10277363 None:intergenic 30.0%
GTAAAATTGGAATGCATTTC+TGG - chr4_2:10277537-10277556 Msa0588110:CDS 30.0%
CTATGGAAGTAAAGAGATAA+AGG + chr4_2:10277577-10277596 None:intergenic 30.0%
TACATATTTCACCCTTCATA+TGG + chr4_2:10277674-10277693 None:intergenic 30.0%
TATGAAGGGTGAAATATGTA+AGG - chr4_2:10277674-10277693 Msa0588110:intron 30.0%
CACGAGTAGCAAAAATATAA+AGG + chr4_2:10277709-10277728 None:intergenic 30.0%
! ATTGTTCTGTGAGTTTTCAG+AGG + chr4_2:10274845-10274864 None:intergenic 35.0%
ACTAGTGATTCAAGCATGAT+TGG - chr4_2:10275000-10275019 Msa0588110:CDS 35.0%
TCAAGCATGATTGGAAATGT+TGG - chr4_2:10275009-10275028 Msa0588110:CDS 35.0%
GTAACACAAAACAGAACCTT+GGG + chr4_2:10275043-10275062 None:intergenic 35.0%
TCTCAAGTTTCCGAAGTTTA+TGG - chr4_2:10275091-10275110 Msa0588110:CDS 35.0%
CTCAAGTTTCCGAAGTTTAT+GGG - chr4_2:10275092-10275111 Msa0588110:CDS 35.0%
TCAAGTTTCCGAAGTTTATG+GGG - chr4_2:10275093-10275112 Msa0588110:CDS 35.0%
AAGTATGTCCCCATAAACTT+CGG + chr4_2:10275104-10275123 None:intergenic 35.0%
! ACTTCTTCGATTTGAAGCAT+TGG + chr4_2:10275310-10275329 None:intergenic 35.0%
ATACTTGAGATTTACTCGCA+CGG + chr4_2:10275496-10275515 None:intergenic 35.0%
TTAGAGACTAAGTCCCTATT+TGG + chr4_2:10275736-10275755 None:intergenic 35.0%
! AATTCGTCTCGTTAGTTCTT+AGG - chr4_2:10276207-10276226 Msa0588110:intron 35.0%
!! GTTCTTAGGATTTTAACGGT+AGG - chr4_2:10276221-10276240 Msa0588110:intron 35.0%
TAGGCTAGGGATTAATATGA+TGG - chr4_2:10276240-10276259 Msa0588110:intron 35.0%
!! TTTTATGGGCTAAGTAAGTG+AGG - chr4_2:10276309-10276328 Msa0588110:intron 35.0%
ATATTCGAGGAACTAAATCG+AGG - chr4_2:10276337-10276356 Msa0588110:intron 35.0%
TATTCGAGGAACTAAATCGA+GGG - chr4_2:10276338-10276357 Msa0588110:intron 35.0%
! TTTTACCAAACACCATACAC+AGG + chr4_2:10276420-10276439 None:intergenic 35.0%
TGTTTGGTAAAAAATGGCCT+TGG - chr4_2:10276428-10276447 Msa0588110:intron 35.0%
AAGTCAAGCTCTCCTTAAAT+GGG - chr4_2:10276633-10276652 Msa0588110:intron 35.0%
CTGAAATCCATTCCCATTTA+AGG + chr4_2:10276648-10276667 None:intergenic 35.0%
AATCACTACCTATGAAGCAT+TGG - chr4_2:10276677-10276696 Msa0588110:intron 35.0%
ACATTGACACCACTAATAGA+TGG - chr4_2:10276725-10276744 Msa0588110:intron 35.0%
ACTATGACAGATCAGATACT+GGG + chr4_2:10276868-10276887 None:intergenic 35.0%
CAATCTTTCTGTGATAGGAA+TGG - chr4_2:10277025-10277044 Msa0588110:intron 35.0%
!! CATCAAGCCTACTTTTAAGT+GGG - chr4_2:10277069-10277088 Msa0588110:intron 35.0%
!! ATCAAGCCTACTTTTAAGTG+GGG - chr4_2:10277070-10277089 Msa0588110:intron 35.0%
AACTCGAATGCCTCAATAAA+CGG + chr4_2:10277311-10277330 None:intergenic 35.0%
ACGTGAAATCTGAAGAAATG+AGG + chr4_2:10277437-10277456 None:intergenic 35.0%
TATCTCGATTAACATTCCGA+CGG + chr4_2:10277462-10277481 None:intergenic 35.0%
TTCACCCTTCATATGGTATT+TGG + chr4_2:10277667-10277686 None:intergenic 35.0%
AAGGGTGAAATATGTAAGGA+AGG - chr4_2:10277678-10277697 Msa0588110:intron 35.0%
TGTTAAGCAGAACCATAGAA+TGG - chr4_2:10277745-10277764 Msa0588110:intron 35.0%
! CAAACTGATTAGCCATTCTA+TGG + chr4_2:10277760-10277779 None:intergenic 35.0%
CTCAAGGGAAAATATCAAAG+AGG + chr4_2:10277806-10277825 None:intergenic 35.0%
AATGTTGGCACTATATCCCA+AGG - chr4_2:10275024-10275043 Msa0588110:CDS 40.0%
CGTAACACAAAACAGAACCT+TGG + chr4_2:10275044-10275063 None:intergenic 40.0%
! AAACCAAGAGGTATGTTGCT+TGG - chr4_2:10275132-10275151 Msa0588110:CDS 40.0%
! ACACCTTCGATCTGAAATGT+CGG + chr4_2:10275210-10275229 None:intergenic 40.0%
TTAACTACATGTGCCAGTGT+CGG + chr4_2:10275356-10275375 None:intergenic 40.0%
TATCACTCAGTCTCCTACTT+AGG - chr4_2:10275513-10275532 Msa0588110:CDS 40.0%
ATCACTCAGTCTCCTACTTA+GGG - chr4_2:10275514-10275533 Msa0588110:CDS 40.0%
GTGGACTTCAGATAGATAGA+AGG - chr4_2:10275865-10275884 Msa0588110:intron 40.0%
!! TAGGATTTTAACGGTAGGCT+AGG - chr4_2:10276226-10276245 Msa0588110:intron 40.0%
!! AGGATTTTAACGGTAGGCTA+GGG - chr4_2:10276227-10276246 Msa0588110:intron 40.0%
GACCATTGTTTACCTGTGTA+TGG - chr4_2:10276405-10276424 Msa0588110:intron 40.0%
CACCATACACAGGTAAACAA+TGG + chr4_2:10276410-10276429 None:intergenic 40.0%
GTTTACCTGTGTATGGTGTT+TGG - chr4_2:10276412-10276431 Msa0588110:intron 40.0%
! ATATGATACATAAGGGGCAC+TGG - chr4_2:10276465-10276484 Msa0588110:intron 40.0%
ATTATATATCCGTGCCTCTG+GGG + chr4_2:10276600-10276619 None:intergenic 40.0%
CATTATATATCCGTGCCTCT+GGG + chr4_2:10276601-10276620 None:intergenic 40.0%
ACATTATATATCCGTGCCTC+TGG + chr4_2:10276602-10276621 None:intergenic 40.0%
GAAGTCAAGCTCTCCTTAAA+TGG - chr4_2:10276632-10276651 Msa0588110:intron 40.0%
AAGCTCTCCTTAAATGGGAA+TGG - chr4_2:10276638-10276657 Msa0588110:intron 40.0%
TCTCTATGCCAATGCTTCAT+AGG + chr4_2:10276688-10276707 None:intergenic 40.0%
CTATAGCGAACTACATGCAT+CGG - chr4_2:10276767-10276786 Msa0588110:intron 40.0%
GACTATGACAGATCAGATAC+TGG + chr4_2:10276869-10276888 None:intergenic 40.0%
! ACTGTAGGAATTGTTGACTG+CGG - chr4_2:10276943-10276962 Msa0588110:intron 40.0%
TTGACTGCGGTGCTTATATT+TGG - chr4_2:10276956-10276975 Msa0588110:intron 40.0%
TAAAAGTAGGCTTGATGCAG+AGG + chr4_2:10277066-10277085 None:intergenic 40.0%
!! GCATCAAGCCTACTTTTAAG+TGG - chr4_2:10277068-10277087 Msa0588110:intron 40.0%
!! TCAAGCCTACTTTTAAGTGG+GGG - chr4_2:10277071-10277090 Msa0588110:intron 40.0%
TTTGACCCCCACTTAAAAGT+AGG + chr4_2:10277079-10277098 None:intergenic 40.0%
!! CATCTTGGTTTTCTGGTCAT+CGG + chr4_2:10277203-10277222 None:intergenic 40.0%
GATGGATAGGCAAGAGATAA+GGG + chr4_2:10277250-10277269 None:intergenic 40.0%
! TGATGGATAGGCAAGAGATA+AGG + chr4_2:10277251-10277270 None:intergenic 40.0%
TTATCTCTTGCCTATCCATC+AGG - chr4_2:10277250-10277269 Msa0588110:intron 40.0%
CAATCTTCACCCGTTTATTG+AGG - chr4_2:10277298-10277317 Msa0588110:intron 40.0%
ACTCGAATGCCTCAATAAAC+GGG + chr4_2:10277310-10277329 None:intergenic 40.0%
TATGCTATGAGAGACCATCT+AGG + chr4_2:10277371-10277390 None:intergenic 40.0%
TTGCGTATCTTACCATTGTG+AGG - chr4_2:10277399-10277418 Msa0588110:intron 40.0%
! CCATTCTTTTCTCCTCACAA+TGG + chr4_2:10277414-10277433 None:intergenic 40.0%
CCATTGTGAGGAGAAAAGAA+TGG - chr4_2:10277411-10277430 Msa0588110:intron 40.0%
! AGATAGCCTTGCAAGTTACA+GGG - chr4_2:10277477-10277496 Msa0588110:intron 40.0%
GGGTTCTATTGGGGTAAAAT+TGG - chr4_2:10277524-10277543 Msa0588110:intron 40.0%
TTACTTCCATAGAGTGCGTT+AGG - chr4_2:10277585-10277604 Msa0588110:CDS 40.0%
ATCCGCATACATACCAGTAA+GGG + chr4_2:10277615-10277634 None:intergenic 40.0%
TATCCGCATACATACCAGTA+AGG + chr4_2:10277616-10277635 None:intergenic 40.0%
ATGCTGCATCACAGACAAAA+GGG + chr4_2:10277640-10277659 None:intergenic 40.0%
TATGCTGCATCACAGACAAA+AGG + chr4_2:10277641-10277660 None:intergenic 40.0%
CTTGAGACAGAAACCTTAGC+AGG + chr4_2:10275078-10275097 None:intergenic 45.0%
CAACCAAGCAACATACCTCT+TGG + chr4_2:10275138-10275157 None:intergenic 45.0%
AGTGTCTGATGTCTGAGTGT+CGG - chr4_2:10275327-10275346 Msa0588110:CDS 45.0%
! ATCGGTGTTCATGTGAGTGT+TGG - chr4_2:10275410-10275429 Msa0588110:CDS 45.0%
CTCGCACGGTAAATCTAGTA+TGG + chr4_2:10275482-10275501 None:intergenic 45.0%
TCTCCTACTTAGGGTCTCTT+TGG - chr4_2:10275523-10275542 Msa0588110:CDS 45.0%
ACTCCAAAGAGACCCTAAGT+AGG + chr4_2:10275529-10275548 None:intergenic 45.0%
! AGATAGATAGAAGGCGTGTC+CGG - chr4_2:10275874-10275893 Msa0588110:intron 45.0%
!! GTCAGTGTAGTGTTGATGTC+CGG + chr4_2:10275910-10275929 None:intergenic 45.0%
! CGAAGTGTGAGTGTTGTGTT+TGG - chr4_2:10275989-10276008 Msa0588110:intron 45.0%
AAGTGAGGAAGCGATATTCG+AGG - chr4_2:10276324-10276343 Msa0588110:intron 45.0%
CTAAATGTCACTGCAGAGCA+TGG + chr4_2:10276375-10276394 None:intergenic 45.0%
!! ATCGGTGTCTTCTGAAGTGT+CGG - chr4_2:10276785-10276804 Msa0588110:intron 45.0%
AGTCAGCTGATCAAAGTCGT+TGG + chr4_2:10276917-10276936 None:intergenic 45.0%
CGATGACCAGAAAACCAAGA+TGG - chr4_2:10277201-10277220 Msa0588110:intron 45.0%
TGACCAGAAAACCAAGATGG+TGG - chr4_2:10277204-10277223 Msa0588110:intron 45.0%
! TACATCCACACCTGATGGAT+AGG + chr4_2:10277263-10277282 None:intergenic 45.0%
TAGCATACATCCACACCTGA+TGG + chr4_2:10277268-10277287 None:intergenic 45.0%
CAATTGGCAGTCTACCTAGA+TGG - chr4_2:10277354-10277373 Msa0588110:intron 45.0%
TTCAGATTTCACGTTGCCGT+CGG - chr4_2:10277443-10277462 Msa0588110:intron 45.0%
! GAGATAGCCTTGCAAGTTAC+AGG - chr4_2:10277476-10277495 Msa0588110:intron 45.0%
TGCCCTTACTGGTATGTATG+CGG - chr4_2:10277610-10277629 Msa0588110:CDS 45.0%
CGCTTGTCAAATGCCTGCTA+AGG - chr4_2:10275062-10275081 Msa0588110:CDS 50.0%
! GCACCGACATTTCAGATCGA+AGG - chr4_2:10275204-10275223 Msa0588110:CDS 50.0%
TTCCTTAACCAATGCCCCAG+AGG - chr4_2:10276583-10276602 Msa0588110:intron 50.0%
CAGCTGACTGTAGTGACTGT+AGG - chr4_2:10276928-10276947 Msa0588110:intron 50.0%
! TTCGCTGCGCAAGTCTTGTA+GGG - chr4_2:10277130-10277149 Msa0588110:intron 50.0%
AGCCTTCCTTCATTGCTCGA+GGG + chr4_2:10277157-10277176 None:intergenic 50.0%
ATGAAGGAAGGCTCATCTGC+TGG - chr4_2:10277164-10277183 Msa0588110:intron 50.0%
!! CTTGGTTTTCTGGTCATCGG+AGG + chr4_2:10277200-10277219 None:intergenic 50.0%
!! CCACCACCATCTTGGTTTTC+TGG + chr4_2:10277210-10277229 None:intergenic 50.0%
! CCAGAAAACCAAGATGGTGG+TGG - chr4_2:10277207-10277226 Msa0588110:intron 50.0%
AGTGTTCTCCACCACCATCT+TGG + chr4_2:10277218-10277237 None:intergenic 50.0%
TCTTGCCTATCCATCAGGTG+TGG - chr4_2:10277255-10277274 Msa0588110:intron 50.0%
! CACAAGCCCTGTAACTTGCA+AGG + chr4_2:10277486-10277505 None:intergenic 50.0%
GATGCCACTGGGGTTCTATT+GGG - chr4_2:10277514-10277533 Msa0588110:intron 50.0%
ATGCCACTGGGGTTCTATTG+GGG - chr4_2:10277515-10277534 Msa0588110:intron 50.0%
TTACCCCAATAGAACCCCAG+TGG + chr4_2:10277521-10277540 None:intergenic 50.0%
!! TGCCTCTGGGGCATTGGTTA+AGG + chr4_2:10276588-10276607 None:intergenic 55.0%
TAACCAATGCCCCAGAGGCA+CGG - chr4_2:10276588-10276607 Msa0588110:intron 55.0%
TGCGCAGCGAAGGTAACACA+GGG + chr4_2:10277121-10277140 None:intergenic 55.0%
TTGCGCAGCGAAGGTAACAC+AGG + chr4_2:10277122-10277141 None:intergenic 55.0%
CTACAAGACTTGCGCAGCGA+AGG + chr4_2:10277131-10277150 None:intergenic 55.0%
! CTTCGCTGCGCAAGTCTTGT+AGG - chr4_2:10277129-10277148 Msa0588110:intron 55.0%
GCCTTCCTTCATTGCTCGAG+GGG + chr4_2:10277156-10277175 None:intergenic 55.0%
GAGCCTTCCTTCATTGCTCG+AGG + chr4_2:10277158-10277177 None:intergenic 55.0%
TTACAGGGCTTGTGAGCCGT+TGG - chr4_2:10277492-10277511 Msa0588110:intron 55.0%
AGAACCCCAGTGGCATCCAA+CGG + chr4_2:10277511-10277530 None:intergenic 55.0%
GGATGCCACTGGGGTTCTAT+TGG - chr4_2:10277513-10277532 Msa0588110:intron 55.0%
GGCACACCTAACGCACTCTA+TGG + chr4_2:10277594-10277613 None:intergenic 55.0%
TGCGTTAGGTGTGCCCTTAC+TGG - chr4_2:10277599-10277618 Msa0588110:CDS 55.0%
!! TGAGTGTCGGACACCGACAC+TGG - chr4_2:10275340-10275359 Msa0588110:CDS 60.0%
GATGTCCGGCACTCAGACAC+CGG + chr4_2:10275896-10275915 None:intergenic 60.0%
!! TATCCGTGCCTCTGGGGCAT+TGG + chr4_2:10276594-10276613 None:intergenic 60.0%
TAGGGCCCCTCGAGCAATGA+AGG - chr4_2:10277148-10277167 Msa0588110:intron 60.0%
GCCCCTCGAGCAATGAAGGA+AGG - chr4_2:10277152-10277171 Msa0588110:intron 60.0%
TGTGAGCCGTTGGATGCCAC+TGG - chr4_2:10277502-10277521 Msa0588110:intron 60.0%
GTGAGCCGTTGGATGCCACT+GGG - chr4_2:10277503-10277522 Msa0588110:intron 60.0%
TGAGCCGTTGGATGCCACTG+GGG - chr4_2:10277504-10277523 Msa0588110:intron 60.0%
CGTGTCCGGTGTCTGAGTGC+CGG - chr4_2:10275888-10275907 Msa0588110:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10274802 10277869 10274802 ID=Msa0588110;Name=Msa0588110
chr4_2 mRNA 10274802 10277869 10274802 ID=Msa0588110-mRNA-1;Parent=Msa0588110;Name=Msa0588110-mRNA-1;_AED=0.34;_eAED=0.34;_QI=94|1|1|1|0.5|0.66|3|184|256
chr4_2 exon 10274802 10275629 10274802 ID=Msa0588110-mRNA-1:exon:2910;Parent=Msa0588110-mRNA-1
chr4_2 exon 10277530 10277666 10277530 ID=Msa0588110-mRNA-1:exon:2909;Parent=Msa0588110-mRNA-1
chr4_2 exon 10277786 10277869 10277786 ID=Msa0588110-mRNA-1:exon:2908;Parent=Msa0588110-mRNA-1
chr4_2 five_prime_UTR 10277786 10277869 10277786 ID=Msa0588110-mRNA-1:five_prime_utr;Parent=Msa0588110-mRNA-1
chr4_2 five_prime_UTR 10277657 10277666 10277657 ID=Msa0588110-mRNA-1:five_prime_utr;Parent=Msa0588110-mRNA-1
chr4_2 CDS 10277530 10277656 10277530 ID=Msa0588110-mRNA-1:cds;Parent=Msa0588110-mRNA-1
chr4_2 CDS 10274986 10275629 10274986 ID=Msa0588110-mRNA-1:cds;Parent=Msa0588110-mRNA-1
chr4_2 three_prime_UTR 10274802 10274985 10274802 ID=Msa0588110-mRNA-1:three_prime_utr;Parent=Msa0588110-mRNA-1
Gene Sequence

>Msa0588110

ATGATTGGAAATGTTGGCACTATATCCCAAGGTTCTGTTTTGTGTTACGCTTGTCAAATGCCTGCTAAGGTTTCTGTCTCAAGTTTCCGAAGTTTATGGGGACATACTTTAGAGATTAAACCAAGAGGAATGGCATACACAGACATGTCCTCTGCATCAAGCCTACTTTTAAGTGGGGGTCAAAATCTTCTATCTCGTACTATCCCTGTGTTACCTTCGCTGCGCAAGTCTTGTAGGGCCCCTCGAGCAATGAAGGAAGGCTCATCTGCTGGCTTTAAGTTTCCTCCGATGACCAGAAAACCAAGATGGTGGTGGAGAACACTAGCATGCATCCCTTATCTCTTGCCTATCCATCAGGTGTGGATGTATGCTAAGACAGCATACAATCTTCACCCGTTTATTGAGGCATTCGAGTTCTTAACGTACCCTTTTTTTATGTCAATTGGCAGTCTACCTAGATGGTCTCTCATAGCATACTTCTTGATTGCGTATCTTACCATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATTTCACGTTGCCGTCGGAATGTTAATCGAGATAGCCTTGCAAGTTACAGGGCTTGTGAGCCGTTGGATGCCACTGGGGTTCTATTGGGGTAAAATTGGAATGCATTTCTGGACTACTGCATTTTTCCTTTATCTCTTTACTTCCATAGAGTGCGTTAGGTGTGCCCTTACTGGTATGTATGCGGATATCCCTTTTGTCTGTGATGCAGCATATATCCAAATACCATATGAAGGGTGA

Protein sequence

>Msa0588110

MIGNVGTISQGSVLCYACQMPAKVSVSSFRSLWGHTLEIKPRGMAYTDMSSASSLLLSGGQNLLSRTIPVLPSLRKSCRAPRAMKEGSSAGFKFPPMTRKPRWWWRTLACIPYLLPIHQVWMYAKTAYNLHPFIEAFEFLTYPFFMSIGSLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGLVSRWMPLGFYWGKIGMHFWTTAFFLYLFTSIECVRCALTGMYADIPFVCDAAYIQIPYEG*