AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0275250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275250 MtrunA17_Chr2g0287161 94.574 387 9 1 1 387 1 375 0.0 729
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275250 AT3G21580.1 63.612 371 118 3 17 387 38 391 1.68e-152 436

Find 113 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTGGATAATCGAATTT+TGG 0.104689 2_3:+7272580 None:intergenic
ACTTGACTTTGCTTTCAATT+TGG 0.164659 2_3:-7271298 Msa0275250:CDS
TAAATCTCAATGACAGTAAA+AGG 0.188453 2_3:+7270501 None:intergenic
CCTTTCCTCGTAAAGGTTAA+TGG 0.195689 2_3:+7270798 None:intergenic
CTTGACTTTGCTTTCAATTT+GGG 0.197389 2_3:-7271297 Msa0275250:CDS
TATTAATTCAATACAGCTTT+TGG 0.206332 2_3:+7267297 None:intergenic
GAAGCTTTGATTCTTATAAT+TGG 0.239794 2_3:+7272520 None:intergenic
TATTGATCCACGAGTTAAAT+TGG 0.247372 2_3:-7272350 Msa0275250:intron
TTATAATTGGATTTCTCTTC+AGG 0.247563 2_3:+7272533 None:intergenic
TTCTTGTCAGAATCATCTTT+TGG 0.254029 2_3:-7267942 Msa0275250:CDS
CTCACCTTCCAAGTATTTCT+TGG 0.254417 2_3:+7271269 None:intergenic
TAACCATGCCACTTTCCTTT+TGG 0.256389 2_3:-7272635 Msa0275250:CDS
GCAGGTTCTTGACATGGTTT+TGG 0.276245 2_3:-7267664 Msa0275250:intron
TCGCATATAATTATGCGATT+TGG 0.287874 2_3:-7271332 Msa0275250:CDS
TTGTGTCTCGTAGGGTAAAT+TGG 0.290091 2_3:-7269146 Msa0275250:CDS
AATCTTCCTATATCTTTAAC+AGG 0.301642 2_3:-7270849 Msa0275250:CDS
GTTAAAGATATAGGAAGATT+TGG 0.313120 2_3:+7270852 None:intergenic
AAAGCTTCAAAAGATGATAA+TGG 0.324391 2_3:-7272505 Msa0275250:CDS
GGAATCCACTTAGACCAATT+TGG 0.327874 2_3:+7272475 None:intergenic
CAAAGTTGAAAACAGATGTT+TGG 0.330048 2_3:-7267589 Msa0275250:three_prime_UTR
TTTCTGTTTATAGGATCAAT+TGG 0.339543 2_3:-7270985 Msa0275250:intron
TTATGTAAACAATGTATGTT+TGG 0.367328 2_3:-7267207 Msa0275250:three_prime_UTR
ATGTGTTAGTGTTGTAAATT+CGG 0.368515 2_3:-7267427 Msa0275250:three_prime_UTR
CTACATAGAATCTTTCTTCA+TGG 0.369788 2_3:-7267632 Msa0275250:three_prime_UTR
AATGCAGATGCTAGTTGTTC+AGG 0.374990 2_3:+7270584 None:intergenic
ATAATTATATGCGACCTTGC+CGG 0.385006 2_3:+7271341 None:intergenic
GCATTGTTATTCATAACATT+AGG 0.385857 2_3:-7270942 Msa0275250:CDS
TCATATGTAATCTCAAAGTT+AGG 0.391690 2_3:-7270822 Msa0275250:CDS
GAATAACCTGTTAAAGATAT+AGG 0.401064 2_3:+7270843 None:intergenic
AAGCTTCAAAAGATGATAAT+GGG 0.403069 2_3:-7272504 Msa0275250:CDS
CTGATAGTAACAACCTTTAC+CGG 0.404938 2_3:+7267356 None:intergenic
GGGAAAAGCAGTGGTGGTGG+TGG 0.408139 2_3:+7272601 None:intergenic
AGTGGCATGGTTACAGTTCA+TGG 0.411818 2_3:+7272645 None:intergenic
TTGAACTTGACAGTTGTCAT+AGG 0.416477 2_3:-7267897 Msa0275250:CDS
TGTGTTAGTGTTGTAAATTC+GGG 0.423460 2_3:-7267426 Msa0275250:three_prime_UTR
TTTAGTTCTGGTTGTTCTAC+CGG 0.429317 2_3:-7271360 Msa0275250:CDS
TGCTAGTTGTTCAGGGGTTG+TGG 0.434463 2_3:+7270592 None:intergenic
AAAAGCAGTGGTGGTGGTGG+TGG 0.437237 2_3:+7272604 None:intergenic
ATAATGGGCCATCACCAAAT+TGG 0.443593 2_3:-7272489 Msa0275250:CDS
AGCCCGGTCACTGCAGGTGG+TGG 0.444595 2_3:+7270876 None:intergenic
GTTATTCATAACATTAGGAC+TGG 0.445479 2_3:-7270937 Msa0275250:CDS
ATCAACTTGAACAATAATTC+AGG 0.453435 2_3:+7267270 None:intergenic
TTCATGGGTGTTGAATTTGA+TGG 0.459035 2_3:+7272661 None:intergenic
ATGCAGATGCTAGTTGTTCA+GGG 0.463241 2_3:+7270585 None:intergenic
CCATTAACCTTTACGAGGAA+AGG 0.463836 2_3:-7270798 Msa0275250:CDS
TTCTGTTTATAGGATCAATT+GGG 0.463911 2_3:-7270984 Msa0275250:intron
CAATTCCCAATGCAATGTTC+CGG 0.469874 2_3:+7269166 None:intergenic
ACTCCACCACCTGCAGTGAC+CGG 0.471747 2_3:-7270879 Msa0275250:CDS
GATAATATTAATGCCGGTAA+AGG 0.473881 2_3:-7267369 Msa0275250:three_prime_UTR
CAGGTCCGGAACATTGCATT+GGG 0.475625 2_3:-7269171 Msa0275250:CDS
TACATAGAATCTTTCTTCAT+GGG 0.476177 2_3:-7267631 Msa0275250:three_prime_UTR
TTTGGAAGCCCGGTCACTGC+AGG 0.479138 2_3:+7270870 None:intergenic
CCACGCAGAGCAAATTTCCC+AGG 0.488862 2_3:-7268376 Msa0275250:intron
AGATAATCCTTTCCTCGTAA+AGG 0.489400 2_3:+7270791 None:intergenic
GAAGAAACAAACTGTCCAAT+GGG 0.493850 2_3:+7272394 None:intergenic
TTCTGGTTGTTCTACCGGCA+AGG 0.499647 2_3:-7271355 Msa0275250:CDS
GCAGGTCCGGAACATTGCAT+TGG 0.501141 2_3:-7269172 Msa0275250:intron
TTTGGGAAAAGCAGTGGTGG+TGG 0.501906 2_3:+7272598 None:intergenic
TTGTCGTATTACACAATTCG+TGG 0.502618 2_3:-7267516 Msa0275250:three_prime_UTR
GACGTCCCCTTTAAAACCTC+TGG 0.504609 2_3:+7267983 None:intergenic
CTCCACCACCTGCAGTGACC+GGG 0.509501 2_3:-7270878 Msa0275250:CDS
AGTGCTACTGCTAGTCCCAT+TGG 0.520144 2_3:-7272409 Msa0275250:CDS
CATGAAGAAAGATTCTATGT+AGG 0.522024 2_3:+7267633 None:intergenic
TTGCTTACCAATTTAACTCG+TGG 0.524511 2_3:+7272343 None:intergenic
TTGGAAACAACTGACTGCTA+TGG 0.525819 2_3:-7269127 Msa0275250:CDS
GGGTTCTACCAAGAAATACT+TGG 0.529184 2_3:-7271277 Msa0275250:CDS
AGTAAGGATAATATTAATGC+CGG 0.536012 2_3:-7267375 Msa0275250:three_prime_UTR
CATTGGGAATTGTGTCTCGT+AGG 0.537291 2_3:-7269155 Msa0275250:CDS
GATGGAGCGATGGAGACAAC+AGG 0.541165 2_3:-7269714 Msa0275250:intron
AAATCTCAATGACAGTAAAA+GGG 0.541790 2_3:+7270502 None:intergenic
TCAGCGCGACAAGCCGTCGA+TGG 0.545083 2_3:-7269732 Msa0275250:intron
GAGAAATAAACCACACACTC+TGG 0.545395 2_3:-7272690 Msa0275250:five_prime_UTR
CACTTAGACCAATTTGGTGA+TGG 0.546566 2_3:+7272481 None:intergenic
ATGGGTGTTGAATTTGATGG+TGG 0.546678 2_3:+7272664 None:intergenic
TATAGGAAGATTTGGAAGCC+CGG 0.550540 2_3:+7270860 None:intergenic
GCTCTTACCAGTGCTAAAAG+TGG 0.557816 2_3:+7267827 None:intergenic
GGAAGCCCGGTCACTGCAGG+TGG 0.561132 2_3:+7270873 None:intergenic
AACTATGCAGGTTCTTGACA+TGG 0.561395 2_3:-7267670 Msa0275250:intron
ATGCTTCCTCTGAGATACAT+AGG 0.562638 2_3:-7270551 Msa0275250:CDS
ATTGGGAATTGTGTCTCGTA+GGG 0.563749 2_3:-7269154 Msa0275250:CDS
TGTGTAATACGACAATTATG+TGG 0.564581 2_3:+7267524 None:intergenic
TTATTCATAACATTAGGACT+GGG 0.564776 2_3:-7270936 Msa0275250:CDS
ACATTAGGACTGGGTTCAGA+TGG 0.568358 2_3:-7270927 Msa0275250:CDS
ATAGAGTGAAGAAACGTAGT+GGG 0.568949 2_3:+7272370 None:intergenic
ACGAGGAAAGGATTATCTGT+AGG 0.571765 2_3:-7270786 Msa0275250:CDS
TGGTCTAAGTGGATTCCCAC+TGG 0.573181 2_3:-7272469 Msa0275250:CDS
ACAAGCCGTCGATGGAGCGA+TGG 0.576779 2_3:-7269724 Msa0275250:CDS
GTGGTGGCAATGAAACCAAA+AGG 0.578849 2_3:+7272620 None:intergenic
GGAAGAAACAAACTGTCCAA+TGG 0.579860 2_3:+7272393 None:intergenic
TGTCTCCATCGCTCCATCGA+CGG 0.583217 2_3:+7269719 None:intergenic
CAATGAAACCAAAAGGAAAG+TGG 0.587121 2_3:+7272627 None:intergenic
TGTCGTATTACACAATTCGT+GGG 0.587306 2_3:-7267515 Msa0275250:three_prime_UTR
CATCACCAAATTGGTCTAAG+TGG 0.591405 2_3:-7272480 Msa0275250:CDS
GTTCTTGACTGAACAAGTGC+AGG 0.597601 2_3:+7270900 None:intergenic
GTGGCATGGTTACAGTTCAT+GGG 0.598022 2_3:+7272646 None:intergenic
AACTAGCATCTGCATTGCGA+TGG 0.598048 2_3:-7270577 Msa0275250:CDS
TGGGTGTTGAATTTGATGGT+GGG 0.603079 2_3:+7272665 None:intergenic
ATGGTGGGAACCAGAGTGTG+TGG 0.608846 2_3:+7272680 None:intergenic
GTTCAGGGGTTGTGGTTGTG+AGG 0.620370 2_3:+7270600 None:intergenic
AAACCAAAAGGAAAGTGGCA+TGG 0.622480 2_3:+7272632 None:intergenic
ATCAGCGGCAAAAGAACCAG+TGG 0.623654 2_3:+7272453 None:intergenic
TGCAGATGCTAGTTGTTCAG+GGG 0.627683 2_3:+7270586 None:intergenic
CAATCTGAAAACTTTATCAG+CGG 0.634884 2_3:+7272438 None:intergenic
TCTACCAAGAAATACTTGGA+AGG 0.639774 2_3:-7271273 Msa0275250:intron
CCTGGGAAATTTGCTCTGCG+TGG 0.650289 2_3:+7268376 None:intergenic
AATAGAGTGAAGAAACGTAG+TGG 0.659171 2_3:+7272369 None:intergenic
CTGCAGGCTATGATAGCCAG+AGG 0.665465 2_3:-7267999 Msa0275250:intron
TAGGTCCATTAACCTTTACG+AGG 0.671782 2_3:-7270803 Msa0275250:CDS
TGTATCTTTCTCATTAGACA+AGG 0.672996 2_3:+7267850 None:intergenic
TCAGCGGCAAAAGAACCAGT+GGG 0.678344 2_3:+7272454 None:intergenic
TAGAGTGAAGAAACGTAGTG+GGG 0.692405 2_3:+7272371 None:intergenic
GATACGCCTATGTATCTCAG+AGG 0.705878 2_3:+7270545 None:intergenic
AGAGTGAAGAAACGTAGTGG+GGG 0.708471 2_3:+7272372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATAATTTATTTATGA+AGG - chr2_3:7269256-7269275 Msa0275250:intron 10.0%
!!! TTTTTGTTTGTATTATTAAT+TGG - chr2_3:7269772-7269791 Msa0275250:intron 10.0%
!!! TTTTATTTTGTATTATTAGT+TGG + chr2_3:7270403-7270422 None:intergenic 10.0%
!!! TATCAATTTTTATGTTTAGT+CGG + chr2_3:7267780-7267799 None:intergenic 15.0%
!! TAAAAAATATAGTGAATAAG+AGG + chr2_3:7268682-7268701 None:intergenic 15.0%
!!! TATATATATATATGCAGTTT+TGG + chr2_3:7269734-7269753 None:intergenic 15.0%
!!! CTTGAATTTATTTTGATTTT+GGG + chr2_3:7270228-7270247 None:intergenic 15.0%
!!! ACTTGAATTTATTTTGATTT+TGG + chr2_3:7270229-7270248 None:intergenic 15.0%
!! ATAAGACAAAAAAAAATCTT+TGG - chr2_3:7272144-7272163 Msa0275250:intron 15.0%
!! TAAGACAAAAAAAAATCTTT+GGG - chr2_3:7272145-7272164 Msa0275250:intron 15.0%
!!! TTTTTCTTCTATCATTAATT+CGG + chr2_3:7272504-7272523 None:intergenic 15.0%
!! TTTCATGAATTATAAAGCTT+TGG - chr2_3:7268122-7268141 Msa0275250:intron 20.0%
!!! TAATTGCTAACATTTTCTTA+AGG + chr2_3:7268403-7268422 None:intergenic 20.0%
!!! TATATTTGAATAGTTTGTCT+TGG - chr2_3:7268454-7268473 Msa0275250:intron 20.0%
!!! TATTCTCTAGTTTCATAATT+TGG - chr2_3:7268727-7268746 Msa0275250:intron 20.0%
!!! ATTCTCTAGTTTCATAATTT+GGG - chr2_3:7268728-7268747 Msa0275250:intron 20.0%
!! CTAATTCAATTTCTGTTTAT+AGG - chr2_3:7268907-7268926 Msa0275250:intron 20.0%
!!! CTTTGATTTACAGTTATTTT+AGG - chr2_3:7269196-7269215 Msa0275250:intron 20.0%
!!! TAGTACTAATTTTTTTACCA+AGG + chr2_3:7269994-7270013 None:intergenic 20.0%
!! TGAAAGAACATATAATTAGT+GGG + chr2_3:7270083-7270102 None:intergenic 20.0%
!!! AATATTTTTTTTATGATGCC+TGG + chr2_3:7270845-7270864 None:intergenic 20.0%
!!! AAGACACATGTAATTTTTAA+AGG - chr2_3:7271278-7271297 Msa0275250:CDS 20.0%
!!! AAAACTTAATTTGGAATTCT+AGG + chr2_3:7271305-7271324 None:intergenic 20.0%
!! AACAATAACAAAACATAAAG+GGG + chr2_3:7271577-7271596 None:intergenic 20.0%
!! CAACAATAACAAAACATAAA+GGG + chr2_3:7271578-7271597 None:intergenic 20.0%
!! ATATTCACCAAATTTAAACT+GGG + chr2_3:7271635-7271654 None:intergenic 20.0%
!! AATATTCACCAAATTTAAAC+TGG + chr2_3:7271636-7271655 None:intergenic 20.0%
!! AAGACAAAAAAAAATCTTTG+GGG - chr2_3:7272146-7272165 Msa0275250:intron 20.0%
!!! TATTAATTCAATACAGCTTT+TGG + chr2_3:7272607-7272626 None:intergenic 20.0%
!! TTATGTAAACAATGTATGTT+TGG - chr2_3:7272694-7272713 Msa0275250:five_prime_UTR 20.0%
!! AGTGTTAAAAGAGTTTTCTT+TGG + chr2_3:7267345-7267364 None:intergenic 25.0%
! TTATAATTGGATTTCTCTTC+AGG + chr2_3:7267371-7267390 None:intergenic 25.0%
!! GAAGCTTTGATTCTTATAAT+TGG + chr2_3:7267384-7267403 None:intergenic 25.0%
! AAAGCTTCAAAAGATGATAA+TGG - chr2_3:7267396-7267415 Msa0275250:three_prime_UTR 25.0%
! AAGCTTCAAAAGATGATAAT+GGG - chr2_3:7267397-7267416 Msa0275250:three_prime_UTR 25.0%
!!! GGTGTTTTAGTAAGATTTTA+TGG - chr2_3:7267660-7267679 Msa0275250:three_prime_UTR 25.0%
!!! GTTTTAGTAAGATTTTATGG+AGG - chr2_3:7267663-7267682 Msa0275250:three_prime_UTR 25.0%
! TGCAACATAGATCAAATTAT+AGG + chr2_3:7267733-7267752 None:intergenic 25.0%
!!! TATGCTTTTTATTCTAGCTT+GGG - chr2_3:7267808-7267827 Msa0275250:intron 25.0%
! CTCTCTTTGATTACAAATAA+TGG + chr2_3:7267876-7267895 None:intergenic 25.0%
! TACTACATAAGTCATATTGT+AGG + chr2_3:7267919-7267938 None:intergenic 25.0%
!!! CTAACTAGTCTTTGAAATAT+AGG - chr2_3:7268199-7268218 Msa0275250:intron 25.0%
!!! TAGTCTTTGAAATATAGGAT+AGG - chr2_3:7268204-7268223 Msa0275250:intron 25.0%
!!! TATTTTTTAACCGTCATGTT+TGG - chr2_3:7268693-7268712 Msa0275250:intron 25.0%
! TGATAGACTTATTTATGAGA+AGG + chr2_3:7268805-7268824 None:intergenic 25.0%
! TTTCTGTTTATAGGATCAAT+TGG - chr2_3:7268916-7268935 Msa0275250:intron 25.0%
! TTCTGTTTATAGGATCAATT+GGG - chr2_3:7268917-7268936 Msa0275250:intron 25.0%
!! GCATTGTTATTCATAACATT+AGG - chr2_3:7268959-7268978 Msa0275250:intron 25.0%
! TTATTCATAACATTAGGACT+GGG - chr2_3:7268965-7268984 Msa0275250:intron 25.0%
! GTTAAAGATATAGGAAGATT+TGG + chr2_3:7269052-7269071 None:intergenic 25.0%
! AATCTTCCTATATCTTTAAC+AGG - chr2_3:7269052-7269071 Msa0275250:intron 25.0%
! GAATAACCTGTTAAAGATAT+AGG + chr2_3:7269061-7269080 None:intergenic 25.0%
! TCATATGTAATCTCAAAGTT+AGG - chr2_3:7269079-7269098 Msa0275250:intron 25.0%
! TGTAAATCAAAGATAAAAGC+AGG + chr2_3:7269188-7269207 None:intergenic 25.0%
!!! TACAGTTATTTTAGGACTTT+TGG - chr2_3:7269204-7269223 Msa0275250:intron 25.0%
! AAATCTCAATGACAGTAAAA+GGG + chr2_3:7269402-7269421 None:intergenic 25.0%
! TAAATCTCAATGACAGTAAA+AGG + chr2_3:7269403-7269422 None:intergenic 25.0%
! CAATGTTTACTACTATAATC+TGG + chr2_3:7269509-7269528 None:intergenic 25.0%
! CATTGTAACTATAACTTTAG+AGG - chr2_3:7269524-7269543 Msa0275250:intron 25.0%
!! TATAACTTTAGAGGAATGAT+AGG - chr2_3:7269533-7269552 Msa0275250:intron 25.0%
!! ATAACTTTAGAGGAATGATA+GGG - chr2_3:7269534-7269553 Msa0275250:intron 25.0%
!!! ACTTCCAATTTGTTATCTTT+GGG + chr2_3:7269916-7269935 None:intergenic 25.0%
!!! AACTTCCAATTTGTTATCTT+TGG + chr2_3:7269917-7269936 None:intergenic 25.0%
! AAAGAACATATAATTAGTGG+GGG + chr2_3:7270081-7270100 None:intergenic 25.0%
! GAAAGAACATATAATTAGTG+GGG + chr2_3:7270082-7270101 None:intergenic 25.0%
! GTGAAAGAACATATAATTAG+TGG + chr2_3:7270084-7270103 None:intergenic 25.0%
! AAAAGTTATGAAGAATCCTA+TGG + chr2_3:7270551-7270570 None:intergenic 25.0%
! AATTTGTCAAACACTATCAA+AGG - chr2_3:7270581-7270600 Msa0275250:CDS 25.0%
! AAATTTAAGCCTAATTGCTT+CGG + chr2_3:7270663-7270682 None:intergenic 25.0%
! ATTGTGTAAGCATTCAAAAT+TGG - chr2_3:7270988-7271007 Msa0275250:intron 25.0%
! AATGAAACAGATCACTAATT+CGG + chr2_3:7271054-7271073 None:intergenic 25.0%
! GTTTCATTTATCCCAATATT+TGG - chr2_3:7271066-7271085 Msa0275250:intron 25.0%
! ATCCTAAATAAAATCACCAA+AGG - chr2_3:7271159-7271178 Msa0275250:intron 25.0%
!!! CTGCATTCTAAAACTTAATT+TGG + chr2_3:7271314-7271333 None:intergenic 25.0%
!!! CAAATTAAGTTTTAGAATGC+AGG - chr2_3:7271312-7271331 Msa0275250:CDS 25.0%
! GGAAAAATATCATTAGAATG+AGG + chr2_3:7271444-7271463 None:intergenic 25.0%
!!! AAATATTTTTGAAGATGCGA+CGG + chr2_3:7271501-7271520 None:intergenic 25.0%
! ACAATAACAAAACATAAAGG+GGG + chr2_3:7271576-7271595 None:intergenic 25.0%
! GCAACAATAACAAAACATAA+AGG + chr2_3:7271579-7271598 None:intergenic 25.0%
! TATTTATCATAAAATCCTGC+AGG - chr2_3:7271886-7271905 Msa0275250:intron 25.0%
! TACATAGAATCTTTCTTCAT+GGG - chr2_3:7272270-7272289 Msa0275250:intron 25.0%
! ATGTGTTAGTGTTGTAAATT+CGG - chr2_3:7272474-7272493 Msa0275250:CDS 25.0%
! AGTAAGGATAATATTAATGC+CGG - chr2_3:7272526-7272545 Msa0275250:CDS 25.0%
! ATCAACTTGAACAATAATTC+AGG + chr2_3:7272634-7272653 None:intergenic 25.0%
CAATCTGAAAACTTTATCAG+CGG + chr2_3:7267466-7267485 None:intergenic 30.0%
TATTGATCCACGAGTTAAAT+TGG - chr2_3:7267551-7267570 Msa0275250:three_prime_UTR 30.0%
! TGGTAAGCAAATTTGTTTCA+TGG - chr2_3:7267571-7267590 Msa0275250:three_prime_UTR 30.0%
! GGTAAGCAAATTTGTTTCAT+GGG - chr2_3:7267572-7267591 Msa0275250:three_prime_UTR 30.0%
! ATTCATGCTTGTGCATTTTT+AGG - chr2_3:7267639-7267658 Msa0275250:three_prime_UTR 30.0%
ATTATAGGACACAAGTTCAT+TGG + chr2_3:7267718-7267737 None:intergenic 30.0%
!! CTATGCTTTTTATTCTAGCT+TGG - chr2_3:7267807-7267826 Msa0275250:intron 30.0%
!!! TGTTTTAGTTTTGGGGTTTT+GGG - chr2_3:7267846-7267865 Msa0275250:exon 30.0%
CAATATGACTTATGTAGTAC+TGG - chr2_3:7267920-7267939 Msa0275250:CDS 30.0%
GGAAAATTCTATTATCCCTT+TGG + chr2_3:7268290-7268309 None:intergenic 30.0%
TTGTTGTGGATACATGTTAA+AGG - chr2_3:7268334-7268353 Msa0275250:intron 30.0%
! AATAGTTTGTCTTGGCTTAT+TGG - chr2_3:7268462-7268481 Msa0275250:intron 30.0%
! TTACATGTGTTTCTGTTCTT+TGG - chr2_3:7268486-7268505 Msa0275250:intron 30.0%
! TCTTTGGTAATCAATTAGTG+TGG - chr2_3:7268502-7268521 Msa0275250:intron 30.0%
!! ATCAATTAGTGTGGTTTTAC+AGG - chr2_3:7268511-7268530 Msa0275250:intron 30.0%
TCGCATATAATTATGCGATT+TGG - chr2_3:7268569-7268588 Msa0275250:intron 30.0%
ACTTGACTTTGCTTTCAATT+TGG - chr2_3:7268603-7268622 Msa0275250:intron 30.0%
CTTGACTTTGCTTTCAATTT+GGG - chr2_3:7268604-7268623 Msa0275250:intron 30.0%
GAATAAGAGGATATAAGCAA+TGG + chr2_3:7268669-7268688 None:intergenic 30.0%
GAAAAAACAACCAAACATGA+CGG + chr2_3:7268706-7268725 None:intergenic 30.0%
GTTATTCATAACATTAGGAC+TGG - chr2_3:7268964-7268983 Msa0275250:intron 30.0%
!!! TATCAGTCTAGTTTTTGATG+AGG - chr2_3:7269421-7269440 Msa0275250:intron 30.0%
TTTCACATTACTATGTTGAG+TGG - chr2_3:7269460-7269479 Msa0275250:intron 30.0%
TTCACATTACTATGTTGAGT+GGG - chr2_3:7269461-7269480 Msa0275250:intron 30.0%
TGTCATTATTAGATTGGAGT+GGG + chr2_3:7269585-7269604 None:intergenic 30.0%
! GTGATGTGTCATTATTAGAT+TGG + chr2_3:7269591-7269610 None:intergenic 30.0%
!!! TATATGCAGTTTTGGAGAAT+TGG + chr2_3:7269726-7269745 None:intergenic 30.0%
CAAAATAGATGTTTGACAGT+GGG + chr2_3:7269890-7269909 None:intergenic 30.0%
ACAAAATAGATGTTTGACAG+TGG + chr2_3:7269891-7269910 None:intergenic 30.0%
GTTTCCCAAAGATAACAAAT+TGG - chr2_3:7269909-7269928 Msa0275250:intron 30.0%
TGATGAATCACTATGTGAAT+CGG + chr2_3:7270044-7270063 None:intergenic 30.0%
ATTCACATAGTGATTCATCA+GGG - chr2_3:7270044-7270063 Msa0275250:intron 30.0%
TCATGAGAATGTTGATATGT+CGG - chr2_3:7270283-7270302 Msa0275250:intron 30.0%
!! TATCCTGATTATTTTGTTGC+AGG - chr2_3:7270711-7270730 Msa0275250:intron 30.0%
! ACTGTGCATTGATCTTATTT+AGG - chr2_3:7270935-7270954 Msa0275250:CDS 30.0%
! TTTTGAATGCTTACACAATG+TGG + chr2_3:7270987-7271006 None:intergenic 30.0%
! TTATCCCAATATTTGGAGTT+TGG - chr2_3:7271073-7271092 Msa0275250:intron 30.0%
!! GATTTTATTTAGGATCAGAC+TGG + chr2_3:7271154-7271173 None:intergenic 30.0%
!! TGCCTTTGGTGATTTTATTT+AGG + chr2_3:7271164-7271183 None:intergenic 30.0%
ACAAATAACTTTCATGCCTT+TGG + chr2_3:7271178-7271197 None:intergenic 30.0%
AAACTGTGGAGTCATATAAA+GGG + chr2_3:7271465-7271484 None:intergenic 30.0%
AAAACTGTGGAGTCATATAA+AGG + chr2_3:7271466-7271485 None:intergenic 30.0%
GAAGTAGTTAAAGAAAACTG+TGG + chr2_3:7271479-7271498 None:intergenic 30.0%
CAACACAAACAAATTTCTGA+TGG + chr2_3:7271673-7271692 None:intergenic 30.0%
! TTCTTGTCAGAATCATCTTT+TGG - chr2_3:7271959-7271978 Msa0275250:intron 30.0%
! TCTTGTCAGAATCATCTTTT+GGG - chr2_3:7271960-7271979 Msa0275250:intron 30.0%
TGTATCTTTCTCATTAGACA+AGG + chr2_3:7272054-7272073 None:intergenic 30.0%
! AAAAAAAATCTTTGGGGACA+AGG - chr2_3:7272152-7272171 Msa0275250:intron 30.0%
AACAATGTAGATAACTATGC+AGG - chr2_3:7272219-7272238 Msa0275250:intron 30.0%
CATGAAGAAAGATTCTATGT+AGG + chr2_3:7272271-7272290 None:intergenic 30.0%
CTACATAGAATCTTTCTTCA+TGG - chr2_3:7272269-7272288 Msa0275250:intron 30.0%
CAAAGTTGAAAACAGATGTT+TGG - chr2_3:7272312-7272331 Msa0275250:intron 30.0%
TGTGTAATACGACAATTATG+TGG + chr2_3:7272380-7272399 None:intergenic 30.0%
TGTGTTAGTGTTGTAAATTC+GGG - chr2_3:7272475-7272494 Msa0275250:CDS 30.0%
TGATAGAAGAAAAAGCAGTA+AGG - chr2_3:7272510-7272529 Msa0275250:CDS 30.0%
GATAATATTAATGCCGGTAA+AGG - chr2_3:7272532-7272551 Msa0275250:CDS 30.0%
!! TTCATGGGTGTTGAATTTGA+TGG + chr2_3:7267243-7267262 None:intergenic 35.0%
CAATGAAACCAAAAGGAAAG+TGG + chr2_3:7267277-7267296 None:intergenic 35.0%
! GCACTGGATAATCGAATTTT+GGG + chr2_3:7267323-7267342 None:intergenic 35.0%
! AAAAGAGTTTTCTTTGGCAC+TGG + chr2_3:7267339-7267358 None:intergenic 35.0%
GAAGAAACAAACTGTCCAAT+GGG + chr2_3:7267510-7267529 None:intergenic 35.0%
ATAGAGTGAAGAAACGTAGT+GGG + chr2_3:7267534-7267553 None:intergenic 35.0%
AATAGAGTGAAGAAACGTAG+TGG + chr2_3:7267535-7267554 None:intergenic 35.0%
TTGCTTACCAATTTAACTCG+TGG + chr2_3:7267561-7267580 None:intergenic 35.0%
!!! TATGGAGGAGTGTTTTAGTT+TGG - chr2_3:7267678-7267697 Msa0275250:intron 35.0%
!!! ATGGAGGAGTGTTTTAGTTT+GGG - chr2_3:7267679-7267698 Msa0275250:intron 35.0%
!!! GTGTTTTAGTTTGGGAGTTT+TGG - chr2_3:7267687-7267706 Msa0275250:intron 35.0%
!!! ATGGAGGACTGTTTTAGTTT+TGG - chr2_3:7267837-7267856 Msa0275250:three_prime_UTR 35.0%
!!! TGGAGGACTGTTTTAGTTTT+GGG - chr2_3:7267838-7267857 Msa0275250:three_prime_UTR 35.0%
!!! CTGTTTTAGTTTTGGGGTTT+TGG - chr2_3:7267845-7267864 Msa0275250:exon 35.0%
! TTGCTGGATCACATTTTACA+AGG + chr2_3:7268179-7268198 None:intergenic 35.0%
! TTCAAAGACTAGTTAGTTGC+TGG + chr2_3:7268195-7268214 None:intergenic 35.0%
TTTGGCGAACATGAAATATG+TGG + chr2_3:7268272-7268291 None:intergenic 35.0%
ACATATTTCATGTTCGCCAA+AGG - chr2_3:7268271-7268290 Msa0275250:intron 35.0%
CATATTTCATGTTCGCCAAA+GGG - chr2_3:7268272-7268291 Msa0275250:intron 35.0%
TGGATACATGTTAAAGGTGA+AGG - chr2_3:7268340-7268359 Msa0275250:intron 35.0%
GGATACATGTTAAAGGTGAA+GGG - chr2_3:7268341-7268360 Msa0275250:intron 35.0%
TAGTGAAACAATTGTGTAGC+TGG - chr2_3:7268431-7268450 Msa0275250:intron 35.0%
!! TTAGTGTGGTTTTACAGGTA+TGG - chr2_3:7268516-7268535 Msa0275250:intron 35.0%
!! TTTAGTTCTGGTTGTTCTAC+CGG - chr2_3:7268541-7268560 Msa0275250:intron 35.0%
ATAATTATATGCGACCTTGC+CGG + chr2_3:7268563-7268582 None:intergenic 35.0%
TCTACCAAGAAATACTTGGA+AGG - chr2_3:7268628-7268647 Msa0275250:intron 35.0%
TCTATCAAGTCAAAACTGCT+TGG - chr2_3:7268818-7268837 Msa0275250:intron 35.0%
ATTTGTAAGCAAATAGCCAG+TGG + chr2_3:7268844-7268863 None:intergenic 35.0%
AGATAATCCTTTCCTCGTAA+AGG + chr2_3:7269113-7269132 None:intergenic 35.0%
! GTGTCATTATTAGATTGGAG+TGG + chr2_3:7269586-7269605 None:intergenic 35.0%
!! TTTTGGAGAATTGGAGAAGA+GGG + chr2_3:7269717-7269736 None:intergenic 35.0%
!! TTTTGGAGAATTGGAGAAGA+GGG + chr2_3:7269717-7269736 None:intergenic 35.0%
!!! TTGATGCAGTTTTGGAGAAT+TGG + chr2_3:7269828-7269847 None:intergenic 35.0%
GATTCACATAGTGATTCATC+AGG - chr2_3:7270043-7270062 Msa0275250:intron 35.0%
AACATATAATTAGTGGGGGT+TGG + chr2_3:7270077-7270096 None:intergenic 35.0%
! AATGGGTCATGTGTCATTAT+TGG - chr2_3:7270476-7270495 Msa0275250:intron 35.0%
! GTCATGTGTCATTATTGGAT+TGG - chr2_3:7270481-7270500 Msa0275250:CDS 35.0%
! TGTCATTATTGGATTGGACT+TGG - chr2_3:7270487-7270506 Msa0275250:CDS 35.0%
CTAATTGCTTCGGTTCAATT+GGG + chr2_3:7270653-7270672 None:intergenic 35.0%
!! TGATTATTTTGTTGCAGGTC+CGG - chr2_3:7270716-7270735 Msa0275250:intron 35.0%
GGAACACAGATAAGAAGTTT+AGG + chr2_3:7270877-7270896 None:intergenic 35.0%
CAGTCCAAACTCCAAATATT+GGG + chr2_3:7271080-7271099 None:intergenic 35.0%
CATGTGTCTTTAAGTAGTAC+AGG + chr2_3:7271268-7271287 None:intergenic 35.0%
ATGTTATGTGGTAGGTAGTT+TGG - chr2_3:7271344-7271363 Msa0275250:CDS 35.0%
TTCCCAACCCAGTTTAAATT+TGG - chr2_3:7271625-7271644 Msa0275250:intron 35.0%
CACCAAATTTAAACTGGGTT+GGG + chr2_3:7271630-7271649 None:intergenic 35.0%
TCACCAAATTTAAACTGGGT+TGG + chr2_3:7271631-7271650 None:intergenic 35.0%
!! TTTCTAGAACACAGCATTGT+TGG + chr2_3:7271727-7271746 None:intergenic 35.0%
AAATGTCAGTTTGTGTTCAG+AGG + chr2_3:7271804-7271823 None:intergenic 35.0%
! CTGAACACAAACTGACATTT+TGG - chr2_3:7271804-7271823 Msa0275250:intron 35.0%
!!! TTTTGGAGCTAATATGCTGT+TGG - chr2_3:7271821-7271840 Msa0275250:intron 35.0%
!! ATGATAGCCAGAGGTTTTAA+AGG - chr2_3:7271911-7271930 Msa0275250:intron 35.0%
!!! TGATAGCCAGAGGTTTTAAA+GGG - chr2_3:7271912-7271931 Msa0275250:intron 35.0%
TTGAACTTGACAGTTGTCAT+AGG - chr2_3:7272004-7272023 Msa0275250:intron 35.0%
! CAAATAGCCTTTAGAGAAGA+AGG + chr2_3:7272182-7272201 None:intergenic 35.0%
TTGTCGTATTACACAATTCG+TGG - chr2_3:7272385-7272404 Msa0275250:CDS 35.0%
TGTCGTATTACACAATTCGT+GGG - chr2_3:7272386-7272405 Msa0275250:CDS 35.0%
TGCTAGATCAAAAAAGGATG+TGG + chr2_3:7272437-7272456 None:intergenic 35.0%
CACTTGTGCTAGATCAAAAA+AGG + chr2_3:7272443-7272462 None:intergenic 35.0%
!!! CTTTTTTGATCTAGCACAAG+TGG - chr2_3:7272441-7272460 Msa0275250:CDS 35.0%
CTGATAGTAACAACCTTTAC+CGG + chr2_3:7272548-7272567 None:intergenic 35.0%
GAGAAATAAACCACACACTC+TGG - chr2_3:7267211-7267230 Msa0275250:three_prime_UTR 40.0%
!! TGGGTGTTGAATTTGATGGT+GGG + chr2_3:7267239-7267258 None:intergenic 40.0%
!! ATGGGTGTTGAATTTGATGG+TGG + chr2_3:7267240-7267259 None:intergenic 40.0%
!!! TAACCATGCCACTTTCCTTT+TGG - chr2_3:7267266-7267285 Msa0275250:three_prime_UTR 40.0%
AAACCAAAAGGAAAGTGGCA+TGG + chr2_3:7267272-7267291 None:intergenic 40.0%
!! AATTTTGGGAAAAGCAGTGG+TGG + chr2_3:7267309-7267328 None:intergenic 40.0%
!! TCGAATTTTGGGAAAAGCAG+TGG + chr2_3:7267312-7267331 None:intergenic 40.0%
!! GGCACTGGATAATCGAATTT+TGG + chr2_3:7267324-7267343 None:intergenic 40.0%
!! ATAATGGGCCATCACCAAAT+TGG - chr2_3:7267412-7267431 Msa0275250:three_prime_UTR 40.0%
! CACTTAGACCAATTTGGTGA+TGG + chr2_3:7267423-7267442 None:intergenic 40.0%
! CATCACCAAATTGGTCTAAG+TGG - chr2_3:7267421-7267440 Msa0275250:three_prime_UTR 40.0%
GGAATCCACTTAGACCAATT+TGG + chr2_3:7267429-7267448 None:intergenic 40.0%
GGAAGAAACAAACTGTCCAA+TGG + chr2_3:7267511-7267530 None:intergenic 40.0%
TAGAGTGAAGAAACGTAGTG+GGG + chr2_3:7267533-7267552 None:intergenic 40.0%
!! ATTCTAGCTTGGGCATTGTA+TGG - chr2_3:7267818-7267837 Msa0275250:intron 40.0%
!!! GGAGGACTGTTTTAGTTTTG+GGG - chr2_3:7267839-7267858 Msa0275250:three_prime_UTR 40.0%
TATCTGGTGTTTGACACATG+TGG - chr2_3:7267968-7267987 Msa0275250:CDS 40.0%
AGCTATCACTCAAACAGTCA+TGG + chr2_3:7268311-7268330 None:intergenic 40.0%
GAGTGATAGCTAAGTTGTTG+TGG - chr2_3:7268320-7268339 Msa0275250:intron 40.0%
TGTTAAAGGTGAAGGGCTTA+AGG - chr2_3:7268348-7268367 Msa0275250:intron 40.0%
!!! ACAGGTATGGCTTTTAGTTC+TGG - chr2_3:7268529-7268548 Msa0275250:intron 40.0%
GGGTTCTACCAAGAAATACT+TGG - chr2_3:7268624-7268643 Msa0275250:intron 40.0%
CTCACCTTCCAAGTATTTCT+TGG + chr2_3:7268635-7268654 None:intergenic 40.0%
!! GGGTCGTGTTTATTTTCTGT+CGG - chr2_3:7268937-7268956 Msa0275250:intron 40.0%
TATAGGAAGATTTGGAAGCC+CGG + chr2_3:7269044-7269063 None:intergenic 40.0%
TAGGTCCATTAACCTTTACG+AGG - chr2_3:7269098-7269117 Msa0275250:intron 40.0%
CCTTTCCTCGTAAAGGTTAA+TGG + chr2_3:7269106-7269125 None:intergenic 40.0%
CCATTAACCTTTACGAGGAA+AGG - chr2_3:7269103-7269122 Msa0275250:intron 40.0%
ACGAGGAAAGGATTATCTGT+AGG - chr2_3:7269115-7269134 Msa0275250:CDS 40.0%
ATGCAGATGCTAGTTGTTCA+GGG + chr2_3:7269319-7269338 None:intergenic 40.0%
AATGCAGATGCTAGTTGTTC+AGG + chr2_3:7269320-7269339 None:intergenic 40.0%
!! ATGCTTCCTCTGAGATACAT+AGG - chr2_3:7269350-7269369 Msa0275250:intron 40.0%
! ATCCGATTCGCAGGTAAAAT+GGG + chr2_3:7269613-7269632 None:intergenic 40.0%
!!! GTTTTGGAGAATTGGAGAAG+AGG + chr2_3:7269718-7269737 None:intergenic 40.0%
!!! GTTTTGGAGAATTGGAGAAG+AGG + chr2_3:7269718-7269737 None:intergenic 40.0%
! CAGAGACATTGATGCAGTTT+TGG + chr2_3:7269836-7269855 None:intergenic 40.0%
! AGGATGTTCGATTTGAAGAC+AGG + chr2_3:7269974-7269993 None:intergenic 40.0%
GTCTTCAAATCGAACATCCT+TGG - chr2_3:7269974-7269993 Msa0275250:intron 40.0%
ATCACTATGTGAATCGGAAG+TGG + chr2_3:7270038-7270057 None:intergenic 40.0%
! AAGAGCATGTGAATCGGAAT+TGG + chr2_3:7270106-7270125 None:intergenic 40.0%
! TAGTCGAAGAGCATGTGAAT+CGG + chr2_3:7270112-7270131 None:intergenic 40.0%
TCACATGCTCTTCGACTAAT+CGG - chr2_3:7270114-7270133 Msa0275250:intron 40.0%
ATCAACATTCTCATGAGCTG+CGG + chr2_3:7270279-7270298 None:intergenic 40.0%
! CTCTTTGTAACTTGCACATC+CGG - chr2_3:7270442-7270461 Msa0275250:intron 40.0%
! ATCCGGTTTGCAGGTAAAAT+GGG - chr2_3:7270459-7270478 Msa0275250:intron 40.0%
!! TGTGTCTAAAGGAGTGTTAG+AGG - chr2_3:7270512-7270531 Msa0275250:CDS 40.0%
!! GTGTCTAAAGGAGTGTTAGA+GGG - chr2_3:7270513-7270532 Msa0275250:CDS 40.0%
ATGAAGAATCCTATGGTCAG+AGG + chr2_3:7270544-7270563 None:intergenic 40.0%
CCTAATTGCTTCGGTTCAAT+TGG + chr2_3:7270654-7270673 None:intergenic 40.0%
CCAATTGAACCGAAGCAATT+AGG - chr2_3:7270651-7270670 Msa0275250:intron 40.0%
GGACCTGCAACAAAATAATC+AGG + chr2_3:7270717-7270736 None:intergenic 40.0%
CAATTCCCAATGCAATGTTC+CGG + chr2_3:7270738-7270757 None:intergenic 40.0%
ATTGGGAATTGTGTCTCGTA+GGG - chr2_3:7270747-7270766 Msa0275250:intron 40.0%
TTGTGTCTCGTAGGGTAAAT+TGG - chr2_3:7270755-7270774 Msa0275250:intron 40.0%
TTGGAAACAACTGACTGCTA+TGG - chr2_3:7270774-7270793 Msa0275250:CDS 40.0%
! TAGCTTTTCCACTTGTATCC+AGG - chr2_3:7270824-7270843 Msa0275250:CDS 40.0%
TTATGATGCCTGGATACAAG+TGG + chr2_3:7270835-7270854 None:intergenic 40.0%
TATCTGTGTTCCAACGAACT+AGG - chr2_3:7270885-7270904 Msa0275250:CDS 40.0%
CAACGAACTAGGTAAGTGAT+GGG - chr2_3:7270896-7270915 Msa0275250:CDS 40.0%
CCAGTCCAAACTCCAAATAT+TGG + chr2_3:7271081-7271100 None:intergenic 40.0%
! CCAATATTTGGAGTTTGGAC+TGG - chr2_3:7271078-7271097 Msa0275250:intron 40.0%
AGGTTTGTCGTGATGTTATG+TGG - chr2_3:7271332-7271351 Msa0275250:CDS 40.0%
TTGTCGTGATGTTATGTGGT+AGG - chr2_3:7271336-7271355 Msa0275250:CDS 40.0%
CAAATTTCCCAGGTTTGTCT+TGG - chr2_3:7271535-7271554 Msa0275250:intron 40.0%
CATACATCCAAGACAAACCT+GGG + chr2_3:7271545-7271564 None:intergenic 40.0%
TCATACATCCAAGACAAACC+TGG + chr2_3:7271546-7271565 None:intergenic 40.0%
TGTCACAGAAAGTGAGTGTA+TGG + chr2_3:7271777-7271796 None:intergenic 40.0%
ACACTCACTTTCTGTGACAT+AGG - chr2_3:7271778-7271797 Msa0275250:intron 40.0%
!!! GATAGCCAGAGGTTTTAAAG+GGG - chr2_3:7271913-7271932 Msa0275250:intron 40.0%
!! GTCAGAATCATCTTTTGGGA+TGG - chr2_3:7271964-7271983 Msa0275250:intron 40.0%
!! AGATACACCACTTTTAGCAC+TGG - chr2_3:7272067-7272086 Msa0275250:intron 40.0%
AGGTGTTCCTTCTTCTCTAA+AGG - chr2_3:7272172-7272191 Msa0275250:intron 40.0%
AACTATGCAGGTTCTTGACA+TGG - chr2_3:7272231-7272250 Msa0275250:intron 40.0%
GTGGCATGGTTACAGTTCAT+GGG + chr2_3:7267258-7267277 None:intergenic 45.0%
AGTGGCATGGTTACAGTTCA+TGG + chr2_3:7267259-7267278 None:intergenic 45.0%
GTGGTGGCAATGAAACCAAA+AGG + chr2_3:7267284-7267303 None:intergenic 45.0%
AGAGTGAAGAAACGTAGTGG+GGG + chr2_3:7267532-7267551 None:intergenic 45.0%
CCAGATAGACTCTCAAGTCT+CGG + chr2_3:7267955-7267974 None:intergenic 45.0%
ACACGTGTTAGTGTCGTGTT+TGG - chr2_3:7268037-7268056 Msa0275250:intron 45.0%
!! TTAGTGTCGTGTTTGGTGTC+TGG - chr2_3:7268044-7268063 Msa0275250:intron 45.0%
!! TAGTGTCGTGTTTGGTGTCT+GGG - chr2_3:7268045-7268064 Msa0275250:intron 45.0%
!! CTGCTGCTGACTGTAGTTTT+TGG - chr2_3:7268149-7268168 Msa0275250:intron 45.0%
!! CTGCTGACTGTAGTTTTTGG+TGG - chr2_3:7268152-7268171 Msa0275250:intron 45.0%
TAGGATAGGATCATGTGTGC+TGG - chr2_3:7268218-7268237 Msa0275250:intron 45.0%
ACATTAGGACTGGGTTCAGA+TGG - chr2_3:7268974-7268993 Msa0275250:intron 45.0%
GTTCTTGACTGAACAAGTGC+AGG + chr2_3:7269004-7269023 None:intergenic 45.0%
TGCAGATGCTAGTTGTTCAG+GGG + chr2_3:7269318-7269337 None:intergenic 45.0%
AACTAGCATCTGCATTGCGA+TGG - chr2_3:7269324-7269343 Msa0275250:intron 45.0%
GATACGCCTATGTATCTCAG+AGG + chr2_3:7269359-7269378 None:intergenic 45.0%
! CACCCATTTTACCTGCGAAT+CGG - chr2_3:7269608-7269627 Msa0275250:intron 45.0%
! CATCCGATTCGCAGGTAAAA+TGG + chr2_3:7269614-7269633 None:intergenic 45.0%
AGGTTCACACGACAGATTTG+GGG + chr2_3:7269954-7269973 None:intergenic 45.0%
CAGGTTCACACGACAGATTT+GGG + chr2_3:7269955-7269974 None:intergenic 45.0%
ACAGGTTCACACGACAGATT+TGG + chr2_3:7269956-7269975 None:intergenic 45.0%
TGTGAATCGGAAGTGGTCTT+TGG + chr2_3:7270031-7270050 None:intergenic 45.0%
AAGAGAGGTTGCGATTGAGA+CGG - chr2_3:7270335-7270354 Msa0275250:intron 45.0%
! CATCCGGTTTGCAGGTAAAA+TGG - chr2_3:7270458-7270477 Msa0275250:intron 45.0%
! GACCCATTTTACCTGCAAAC+CGG + chr2_3:7270464-7270483 None:intergenic 45.0%
TGGACTTGGAGTGTGTCTAA+AGG - chr2_3:7270501-7270520 Msa0275250:CDS 45.0%
CATTGGGAATTGTGTCTCGT+AGG - chr2_3:7270746-7270765 Msa0275250:intron 45.0%
CCATCACTTACCTAGTTCGT+TGG + chr2_3:7270898-7270917 None:intergenic 45.0%
CCAACGAACTAGGTAAGTGA+TGG - chr2_3:7270895-7270914 Msa0275250:CDS 45.0%
GCTCTTACCAGTGCTAAAAG+TGG + chr2_3:7272077-7272096 None:intergenic 45.0%
! GCAGGTTCTTGACATGGTTT+TGG - chr2_3:7272237-7272256 Msa0275250:intron 45.0%
!! TATATATATGTATTATTAAT+TGG - chr2_3:7269670-7269689 Msa0275250:intron 5.0%
TTTGGGAAAAGCAGTGGTGG+TGG + chr2_3:7267306-7267325 None:intergenic 50.0%
! TGGTCTAAGTGGATTCCCAC+TGG - chr2_3:7267432-7267451 Msa0275250:three_prime_UTR 50.0%
TCAGCGGCAAAAGAACCAGT+GGG + chr2_3:7267450-7267469 None:intergenic 50.0%
ATCAGCGGCAAAAGAACCAG+TGG + chr2_3:7267451-7267470 None:intergenic 50.0%
! AGTGCTACTGCTAGTCCCAT+TGG - chr2_3:7267492-7267511 Msa0275250:three_prime_UTR 50.0%
! CTAGCTTGGGCATTGTATGG+AGG - chr2_3:7267821-7267840 Msa0275250:intron 50.0%
CCGAGACTTGAGAGTCTATC+TGG - chr2_3:7267952-7267971 Msa0275250:CDS 50.0%
! TTCTGGTTGTTCTACCGGCA+AGG - chr2_3:7268546-7268565 Msa0275250:intron 50.0%
AGTCAAAACTGCTTGGCCAC+TGG - chr2_3:7268825-7268844 Msa0275250:intron 50.0%
TGCTAGTTGTTCAGGGGTTG+TGG + chr2_3:7269312-7269331 None:intergenic 50.0%
! TACTTGCACATCCGATTCGC+AGG + chr2_3:7269622-7269641 None:intergenic 50.0%
GGTTCACACGACAGATTTGG+GGG + chr2_3:7269953-7269972 None:intergenic 50.0%
AGAGCACATGCTAGAGACAG+CGG - chr2_3:7270310-7270329 Msa0275250:intron 50.0%
GTCTCAATCGCAACCTCTCT+TGG + chr2_3:7270336-7270355 None:intergenic 50.0%
TCATCTCAACCTCCCCTTGA+TGG + chr2_3:7270370-7270389 None:intergenic 50.0%
! AACTTGCACATCCGGTTTGC+AGG - chr2_3:7270450-7270469 Msa0275250:intron 50.0%
CAGGTCCGGAACATTGCATT+GGG - chr2_3:7270730-7270749 Msa0275250:intron 50.0%
!! GACGTCCCCTTTAAAACCTC+TGG + chr2_3:7271921-7271940 None:intergenic 50.0%
! ATGGTGGGAACCAGAGTGTG+TGG + chr2_3:7267224-7267243 None:intergenic 55.0%
!! AAAAGCAGTGGTGGTGGTGG+TGG + chr2_3:7267300-7267319 None:intergenic 55.0%
!! GTCGTGTTTGGTGTCTGGGT+CGG - chr2_3:7268049-7268068 Msa0275250:intron 55.0%
GTTCAGGGGTTGTGGTTGTG+AGG + chr2_3:7269304-7269323 None:intergenic 55.0%
TGTCTCCATCGCTCCATCGA+CGG + chr2_3:7270185-7270204 None:intergenic 55.0%
GATGGAGCGATGGAGACAAC+AGG - chr2_3:7270187-7270206 Msa0275250:intron 55.0%
GAGGTTGCGATTGAGACGGT+CGG - chr2_3:7270339-7270358 Msa0275250:intron 55.0%
AGGGTGTGACCTCTGACCAT+AGG - chr2_3:7270532-7270551 Msa0275250:CDS 55.0%
GCAGGTCCGGAACATTGCAT+TGG - chr2_3:7270729-7270748 Msa0275250:intron 55.0%
! CCTGGGAAATTTGCTCTGCG+TGG + chr2_3:7271528-7271547 None:intergenic 55.0%
CCACGCAGAGCAAATTTCCC+AGG - chr2_3:7271525-7271544 Msa0275250:intron 55.0%
CTCTGGCTATCATAGCCTGC+AGG + chr2_3:7271904-7271923 None:intergenic 55.0%
CTGCAGGCTATGATAGCCAG+AGG - chr2_3:7271902-7271921 Msa0275250:intron 55.0%
!! GGGAAAAGCAGTGGTGGTGG+TGG + chr2_3:7267303-7267322 None:intergenic 60.0%
ACTCCACCACCTGCAGTGAC+CGG - chr2_3:7269022-7269041 Msa0275250:intron 60.0%
TTTGGAAGCCCGGTCACTGC+AGG + chr2_3:7269034-7269053 None:intergenic 60.0%
ACAAGCCGTCGATGGAGCGA+TGG - chr2_3:7270177-7270196 Msa0275250:intron 60.0%
CTAGAGACAGCGGCCAAGAG+AGG - chr2_3:7270320-7270339 Msa0275250:intron 60.0%
GTTGCGATTGAGACGGTCGG+CGG - chr2_3:7270342-7270361 Msa0275250:intron 60.0%
CTCCACCACCTGCAGTGACC+GGG - chr2_3:7269023-7269042 Msa0275250:intron 65.0%
TCAGCGCGACAAGCCGTCGA+TGG - chr2_3:7270169-7270188 Msa0275250:intron 65.0%
ACGGTCGGCGGCACCATCAA+GGG - chr2_3:7270354-7270373 Msa0275250:intron 65.0%
AGCCCGGTCACTGCAGGTGG+TGG + chr2_3:7269028-7269047 None:intergenic 70.0%
GGAAGCCCGGTCACTGCAGG+TGG + chr2_3:7269031-7269050 None:intergenic 70.0%
GACGGTCGGCGGCACCATCA+AGG - chr2_3:7270353-7270372 Msa0275250:intron 70.0%
CGGTCGGCGGCACCATCAAG+GGG - chr2_3:7270355-7270374 Msa0275250:intron 70.0%
TCGGCGGCACCATCAAGGGG+AGG - chr2_3:7270358-7270377 Msa0275250:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 7267204 7272719 7267204 ID=Msa0275250;Name=Msa0275250
chr2_3 mRNA 7267204 7272719 7267204 ID=Msa0275250-mRNA-1;Parent=Msa0275250;Name=Msa0275250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=54|0.75|0.88|0.88|1|0.88|9|507|387
chr2_3 exon 7267204 7267682 7267204 ID=Msa0275250-mRNA-1:exon:3346;Parent=Msa0275250-mRNA-1
chr2_3 exon 7267835 7268015 7267835 ID=Msa0275250-mRNA-1:exon:3345;Parent=Msa0275250-mRNA-1
chr2_3 exon 7268377 7268441 7268377 ID=Msa0275250-mRNA-1:exon:3344;Parent=Msa0275250-mRNA-1
chr2_3 exon 7269115 7269190 7269115 ID=Msa0275250-mRNA-1:exon:3343;Parent=Msa0275250-mRNA-1
chr2_3 exon 7269715 7269750 7269715 ID=Msa0275250-mRNA-1:exon:3342;Parent=Msa0275250-mRNA-1
chr2_3 exon 7270481 7270645 7270481 ID=Msa0275250-mRNA-1:exon:3341;Parent=Msa0275250-mRNA-1
chr2_3 exon 7270758 7270994 7270758 ID=Msa0275250-mRNA-1:exon:3340;Parent=Msa0275250-mRNA-1
chr2_3 exon 7271274 7271390 7271274 ID=Msa0275250-mRNA-1:exon:3339;Parent=Msa0275250-mRNA-1
chr2_3 exon 7272351 7272719 7272351 ID=Msa0275250-mRNA-1:exon:3338;Parent=Msa0275250-mRNA-1
chr2_3 five_prime_UTR 7272666 7272719 7272666 ID=Msa0275250-mRNA-1:five_prime_utr;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7272351 7272665 7272351 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7271274 7271390 7271274 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7270758 7270994 7270758 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7270481 7270645 7270481 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7269715 7269750 7269715 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7269115 7269190 7269115 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7268377 7268441 7268377 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 CDS 7267863 7268015 7267863 ID=Msa0275250-mRNA-1:cds;Parent=Msa0275250-mRNA-1
chr2_3 three_prime_UTR 7267835 7267862 7267835 ID=Msa0275250-mRNA-1:three_prime_utr;Parent=Msa0275250-mRNA-1
chr2_3 three_prime_UTR 7267204 7267682 7267204 ID=Msa0275250-mRNA-1:three_prime_utr;Parent=Msa0275250-mRNA-1
Gene Sequence

>Msa0275250

ATGAACTGTAACCATGCCACTTTCCTTTTGGTTTCATTGCCACCACCACCACCACTGCTTTTCCCAAAATTCGATTATCCAGTGCCAAAGAAAACTCTTTTAACACTAAACCTGAAGAGAAATCCAATTATAAGAATCAAAGCTTCAAAAGATGATAATGGGCCATCACCAAATTGGTCTAAGTGGATTCCCACTGGTTCTTTTGCCGCTGATAAAGTTTTCAGATTGATTTCAAGTGCTACTGCTAGTCCCATTGGACAGTTTGTTTCTTCCCCCACTACGTTTCTTCACTCTATTGATCCACGAGTTAAATTGGTATGGCTTTTAGTTCTGGTTGTTCTACCGGCAAGGTCGCATATAATTATGCGATTTGGATTAGTAGCATACTTGACTTTGCTTTCAATTTGGGTTCTACCAAGAAATACTTGGAAGGATCAATTGGGTCGTGTTTATTTTCTGTCGGCATTGTTATTCATAACATTAGGACTGGGTTCAGATGGCGTGCCTGCACTTGTTCAGTCAAGAACTCCACCACCTGCAGTGACCGGGCTTCCAAATCTTCCTATATCTTTAACAGGTTATTCATATGTAATCTCAAAGTTAGGTCCATTAACCTTTACGAGGAAAGGATTATCTGTAGGAAGCACTGTTGCATGTTTGACTTTTACAGTATTTCAAAGTGCAAGTCTCTGCCTCACAACCACAACCCCTGAACAACTAGCATCTGCATTGCGATGGTTCATGCTTCCTCTGAGATACATAGGCGTATCTGTATCAGAAATCGTGCTTACCCTTTTACTGTCATTGAGATTTATCAGTCTAGTTTTTGATGAGCGCGACAAGCCGTCGATGGAGCGATGGAGACAACAGGTCCGGAACATTGCATTGGGAATTGTGTCTCGTAGGGTAAATTGGAAACAACTGACTGCTATGGAGACAATTGATATTTTCTTTAACTACTTCCGTCGCATCTTCAAAAATATTTTCAGCCACGCAGAGCAAATTTCCCAGGCTATGATAGCCAGAGGTTTTAAAGGGGACGTCGAGAATCACAAAATTTATTTCTTGTCAGAATCATCTTTTGGGATGGCAGATATTGTATGTTTGTTGAACTTGACAGTTGTCATAGGAGCTTCTCTTCTGTCTGAGTACTACCTTGTCTAA

Protein sequence

>Msa0275250

MNCNHATFLLVSLPPPPPLLFPKFDYPVPKKTLLTLNLKRNPIIRIKASKDDNGPSPNWSKWIPTGSFAADKVFRLISSATASPIGQFVSSPTTFLHSIDPRVKLVWLLVLVVLPARSHIIMRFGLVAYLTLLSIWVLPRNTWKDQLGRVYFLSALLFITLGLGSDGVPALVQSRTPPPAVTGLPNLPISLTGYSYVISKLGPLTFTRKGLSVGSTVACLTFTVFQSASLCLTTTTPEQLASALRWFMLPLRYIGVSVSEIVLTLLLSLRFISLVFDERDKPSMERWRQQVRNIALGIVSRRVNWKQLTAMETIDIFFNYFRRIFKNIFSHAEQISQAMIARGFKGDVENHKIYFLSESSFGMADIVCLLNLTVVIGASLLSEYYLV*