AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385850 MtrunA17_Chr3g0143831 90.808 359 4 2 1 356 1 333 0.0 645
Msa0385850 MtrunA17_Chr1g0207651 27.885 312 173 12 75 342 60 363 4.98e-25 104
Msa0385850 MtrunA17_Chr6g0451961 22.754 334 219 5 38 342 31 354 1.09e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385850 AT1G63610.1 63.587 368 85 8 1 354 6 338 1.41e-142 407
Msa0385850 AT1G63610.2 63.846 260 71 7 1 246 6 256 2.48e-93 279
Msa0385850 AT1G63610.3 56.452 186 59 6 1 173 6 182 2.28e-54 177
Msa0385850 AT2G14910.1 25.949 316 182 9 64 341 72 373 5.71e-23 99.4
Msa0385850 AT5G14970.1 24.912 285 183 6 79 342 79 353 7.88e-22 95.5
Msa0385850 AT2G14910.2 27.542 236 139 5 63 273 71 299 3.51e-19 88.2

Find 108 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTATGGTTTGAATTTC+TGG 0.007347 3_1:-89564053 None:intergenic
CTCTGTTCACCATTATTATT+TGG 0.080074 3_1:+89566760 Msa0385850:CDS
TGAAAGAAAGTGTTCCTTTA+TGG 0.117262 3_1:-89564066 None:intergenic
GACCGTGCAGCCGGAATTTA+TGG 0.149781 3_1:+89564421 Msa0385850:CDS
AAAAGGTGCAAAATCTAATT+AGG 0.159317 3_1:-89567559 None:intergenic
AACTTGGAAAACTGCTTTAT+TGG 0.187386 3_1:+89567370 Msa0385850:CDS
GGTCCCTCACATTAACTATT+TGG 0.210410 3_1:-89567655 None:intergenic
CAGAGTGCCGTTAGGGGATT+TGG 0.219495 3_1:-89564122 None:intergenic
TATTTGATTGTTTACACTTT+TGG 0.226606 3_1:+89567805 Msa0385850:three_prime_UTR
TCCGAGGCTCAAGAGATTTC+AGG 0.291456 3_1:-89566137 None:intergenic
GGCAATTCAGCCAGCTTTGC+AGG 0.291964 3_1:-89567462 None:intergenic
TATTTGACAGCCTGAAACTA+TGG 0.296055 3_1:+89567743 Msa0385850:three_prime_UTR
AAATGATTCACCATAGTTTC+AGG 0.297027 3_1:-89567753 None:intergenic
GTTTAAGCAGCCGATAAATT+TGG 0.298138 3_1:+89567498 Msa0385850:exon
CCTTCATCCAATCAATAAAA+AGG 0.309501 3_1:-89567576 None:intergenic
TCTGTTCACCATTATTATTT+GGG 0.315236 3_1:+89566761 Msa0385850:CDS
TCCGGACGTGCAAGATAAAA+AGG 0.320165 3_1:+89565609 Msa0385850:CDS
TTTGGAACTGCAAGAAAGTT+TGG 0.323667 3_1:+89565573 Msa0385850:CDS
ATTAGGTGGAACAACATTTC+TGG 0.347794 3_1:+89566000 Msa0385850:CDS
GGGACACAAAAGAATGTTTC+AGG 0.353665 3_1:+89565970 Msa0385850:CDS
TCCAGAAATTCAAACCATAA+AGG 0.354255 3_1:+89564052 Msa0385850:CDS
TACTTCATGACCAAATTTAT+CGG 0.364178 3_1:-89567508 None:intergenic
ATGTTTCAGGTGAAGTCATT+AGG 0.366658 3_1:+89565983 Msa0385850:CDS
ACAAACAATTCCATAAATTC+CGG 0.373472 3_1:-89564431 None:intergenic
TGTGTCCCAGGTGCATAGTC+TGG 0.375806 3_1:-89565955 None:intergenic
GAGCAGAAGAGAAATCTTAC+TGG 0.381488 3_1:+89564388 Msa0385850:CDS
TTTGGAACAAGTTGCCCTTC+CGG 0.390092 3_1:+89565591 Msa0385850:CDS
AGGGCACTTGGCTCCGACTT+GGG 0.396316 3_1:-89567539 None:intergenic
AAAACTGCTTTATTGGTTGA+TGG 0.399137 3_1:+89567377 Msa0385850:CDS
TAAGTTGAATAACTAAGAAC+TGG 0.400756 3_1:+89567888 Msa0385850:three_prime_UTR
CTTTATTGGTTGATGGTGGT+TGG 0.401910 3_1:+89567384 Msa0385850:CDS
AAAGGTGCAAAATCTAATTA+GGG 0.408426 3_1:-89567558 None:intergenic
TAGAAATGCACAATACCGTT+TGG 0.412122 3_1:+89565555 Msa0385850:CDS
TTGACGAAGGTGAACGAGTT+CGG 0.414444 3_1:-89564021 None:intergenic
GTTAACATTGAATTTAATGT+TGG 0.423744 3_1:+89566783 Msa0385850:CDS
GAGACTAGTGCATCCGAACT+TGG 0.446534 3_1:+89567354 Msa0385850:CDS
AAGGCCTAGGAGTGACATAA+AGG 0.446674 3_1:+89567595 Msa0385850:three_prime_UTR
TTTATTGGTTGATGGTGGTT+GGG 0.446688 3_1:+89567385 Msa0385850:CDS
TCTTGAGCCTCGGAATTTGA+AGG 0.450089 3_1:+89566146 Msa0385850:CDS
AATGTTAACCCAAATAATAA+TGG 0.450726 3_1:-89566769 None:intergenic
CATTTCTGGACCTGAGAGAA+TGG 0.452153 3_1:+89566014 Msa0385850:CDS
CTATTTGGAGACCACTAATC+CGG 0.456200 3_1:-89567640 None:intergenic
ACTTGGAACTCCTGCAAAGC+TGG 0.466951 3_1:+89567452 Msa0385850:CDS
CATAAGCTGTGCAAGGTTCT+CGG 0.467098 3_1:-89565503 None:intergenic
AAAAGTACCAGAGTGCCGTT+AGG 0.471684 3_1:-89564130 None:intergenic
TATTGATTGGATGAAGGCCT+AGG 0.476878 3_1:+89567582 Msa0385850:three_prime_UTR
CAATGCACAAAATGAACTGT+TGG 0.481591 3_1:+89566110 Msa0385850:CDS
GAAGAAGATAGTATGAATTG+AGG 0.483318 3_1:-89563965 None:intergenic
TAGGGCACTTGGCTCCGACT+TGG 0.483340 3_1:-89567540 None:intergenic
AGACAGACACACAGACGGAC+AGG 0.487589 3_1:-89563828 None:intergenic
AACTTTCTTGCAGTTCCAAA+CGG 0.487921 3_1:-89565570 None:intergenic
TGCAGATCCTACTCAAATGA+AGG 0.495494 3_1:+89566626 Msa0385850:CDS
CAGACGGTGACAAATATGAT+TGG 0.500013 3_1:+89564766 Msa0385850:CDS
AAGCTGGCTGAATTGCCGCC+AGG 0.504319 3_1:+89567468 Msa0385850:CDS
TAGGATTTAACTAGTAGTGC+TGG 0.507226 3_1:+89566552 Msa0385850:intron
TACATTTATAAAGCGCCTAC+TGG 0.507895 3_1:+89566599 Msa0385850:CDS
AAAGTACCAGAGTGCCGTTA+GGG 0.507908 3_1:-89564129 None:intergenic
CAAAATCTAATTAGGGCACT+TGG 0.510576 3_1:-89567551 None:intergenic
ACCTGAAATCTCTTGAGCCT+CGG 0.512343 3_1:+89566136 Msa0385850:CDS
TAAGTTGCATATAAATCAAA+GGG 0.514116 3_1:-89567722 None:intergenic
CGTCTGTGTGTCTGTCTAGT+GGG 0.516894 3_1:+89563834 Msa0385850:five_prime_UTR
CATTGAAGTTCGTTATGACA+TGG 0.518591 3_1:+89567422 Msa0385850:CDS
AACAATCACATTGTAAAGTG+TGG 0.519671 3_1:+89563754 Msa0385850:five_prime_UTR
TATGACATGGAAAGAGTACT+TGG 0.520400 3_1:+89567435 Msa0385850:CDS
GAATCATTTAAATACAGAAA+AGG 0.521196 3_1:+89567767 Msa0385850:three_prime_UTR
GGGCACTTGGCTCCGACTTG+GGG 0.526389 3_1:-89567538 None:intergenic
TTCTCCTTTATGTCACTCCT+AGG 0.527238 3_1:-89567599 None:intergenic
ATAAGTTGCATATAAATCAA+AGG 0.528802 3_1:-89567723 None:intergenic
AGACAACACGTTACCGGTGG+AGG 0.537586 3_1:-89564464 None:intergenic
CAAATCCCCTAACGGCACTC+TGG 0.539235 3_1:+89564123 Msa0385850:CDS
TGATTTCCACCTCCCACGTA+CGG 0.539744 3_1:-89563790 None:intergenic
CCGTCTGTGTGTCTGTCTAG+TGG 0.543370 3_1:+89563833 Msa0385850:five_prime_UTR
GATATTCCAGACTATGCACC+TGG 0.544069 3_1:+89565949 Msa0385850:CDS
ATGTACAGTGTCATGATGAC+TGG 0.544482 3_1:+89565523 Msa0385850:CDS
GTATGTCAAGACCGTGCAGC+CGG 0.545800 3_1:+89564412 Msa0385850:CDS
GTATGAATTGAGGTCTGAGT+GGG 0.546871 3_1:-89563955 None:intergenic
GAGGAGTTAAATCGTCAAGT+TGG 0.554733 3_1:+89566075 Msa0385850:CDS
ATATAACCGTACGTGGGAGG+TGG 0.556361 3_1:+89563784 Msa0385850:five_prime_UTR
TTCCATAAATTCCGGCTGCA+CGG 0.558125 3_1:-89564423 None:intergenic
TTTAACTAGTAGTGCTGGAG+AGG 0.582109 3_1:+89566557 Msa0385850:CDS
GTACATTGAAATACTTGAAG+CGG 0.584560 3_1:+89566047 Msa0385850:CDS
TTTATCTTGCACGTCCGGAA+GGG 0.586926 3_1:-89565605 None:intergenic
TAGGAGTGACATAAAGGAGA+AGG 0.594324 3_1:+89567601 Msa0385850:three_prime_UTR
GTCTCCAAATAGTTAATGTG+AGG 0.598898 3_1:+89567651 Msa0385850:three_prime_UTR
ATGAATTGAGGTCTGAGTGG+GGG 0.600751 3_1:-89563953 None:intergenic
ACAATCACATTGTAAAGTGT+GGG 0.602829 3_1:+89563755 Msa0385850:five_prime_UTR
TATGAATTGAGGTCTGAGTG+GGG 0.604961 3_1:-89563954 None:intergenic
AGGCAAACCTTCATTTGAGT+AGG 0.605118 3_1:-89566633 None:intergenic
CACTGTACATAAGCTGTGCA+AGG 0.614814 3_1:-89565510 None:intergenic
TTTCAGGTGAAGTCATTAGG+TGG 0.620061 3_1:+89565986 Msa0385850:CDS
AAATCAACCTTCAAATTCCG+AGG 0.621737 3_1:-89566153 None:intergenic
ACTGCTTTATTGGTTGATGG+TGG 0.623526 3_1:+89567380 Msa0385850:CDS
AATACTTGAAGCGGAGATCG+AGG 0.627103 3_1:+89566056 Msa0385850:CDS
TAGGATCTGCAACAGCCAGT+AGG 0.630746 3_1:-89566614 None:intergenic
AGTATGAATTGAGGTCTGAG+TGG 0.642121 3_1:-89563956 None:intergenic
TATATATAACCGTACGTGGG+AGG 0.645439 3_1:+89563781 Msa0385850:five_prime_UTR
GGTGAATCCAAATCCCCTAA+CGG 0.646624 3_1:+89564115 Msa0385850:CDS
GTCTAGTGGGAAGTAAAACA+AGG 0.649463 3_1:+89563847 Msa0385850:five_prime_UTR
ACAGTGAACTATGCTTTGTG+CGG 0.657658 3_1:-89563870 None:intergenic
AAGTACTGTTGTCCCCAAGT+CGG 0.664345 3_1:+89567526 Msa0385850:three_prime_UTR
GACAGACACACAGACGGACA+GGG 0.667442 3_1:-89563827 None:intergenic
CCACTAGACAGACACACAGA+CGG 0.669352 3_1:-89563833 None:intergenic
AAGTACCAGAGTGCCGTTAG+GGG 0.671487 3_1:-89564128 None:intergenic
TCTCCAAATAGTTAATGTGA+GGG 0.673568 3_1:+89567652 Msa0385850:three_prime_UTR
GTTATATATATAACCGTACG+TGG 0.693996 3_1:+89563777 Msa0385850:five_prime_UTR
TTATATATATAACCGTACGT+GGG 0.732877 3_1:+89563778 Msa0385850:five_prime_UTR
TGTGGATGCTATGAGACAGA+CGG 0.739945 3_1:+89564750 Msa0385850:CDS
ATATTCCAGACTATGCACCT+GGG 0.741358 3_1:+89565950 Msa0385850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTTGTATTTATTATTT+AGG - chr3_1:89565288-89565307 None:intergenic 10.0%
!!! TATCATAATATAATTTTAAC+AGG + chr3_1:89565304-89565323 Msa0385850:intron 10.0%
!! ATTTCTTTCTGTTATTAATT+AGG + chr3_1:89564726-89564745 Msa0385850:intron 15.0%
!! TTGTTATAGAAAAAAATTGA+GGG - chr3_1:89564801-89564820 None:intergenic 15.0%
!! ATTGTTATAGAAAAAAATTG+AGG - chr3_1:89564802-89564821 None:intergenic 15.0%
!! ATCATTAAATCATAAAACAA+CGG - chr3_1:89564875-89564894 None:intergenic 15.0%
!!! TTGTTTTATGATTTAATGAT+AGG + chr3_1:89564875-89564894 Msa0385850:intron 15.0%
!! ATATAATCTTACAATATTGT+AGG + chr3_1:89565927-89565946 Msa0385850:intron 15.0%
!!! TTAATTTTCTCCTTAAATTA+AGG + chr3_1:89566972-89566991 Msa0385850:intron 15.0%
!!! ATTTCTTCAAATTGATTTAT+GGG + chr3_1:89567209-89567228 Msa0385850:intron 15.0%
!!! TGAATGAATCTAAAATGAAA+AGG + chr3_1:89564624-89564643 Msa0385850:intron 20.0%
!! TGTTATAGAAAAAAATTGAG+GGG - chr3_1:89564800-89564819 None:intergenic 20.0%
!! TCATATCATATCATGTAAAT+AGG - chr3_1:89565246-89565265 None:intergenic 20.0%
!!! ACCATTTTGTTTTTTTATTC+AGG + chr3_1:89565477-89565496 Msa0385850:intron 20.0%
!! ACCTGAATAAAAAAACAAAA+TGG - chr3_1:89565481-89565500 None:intergenic 20.0%
!!! TGTGATCAATTTTGAAAATA+CGG + chr3_1:89566282-89566301 Msa0385850:intron 20.0%
!! AATTTAAGAACATTGTTTGT+TGG + chr3_1:89566487-89566506 Msa0385850:intron 20.0%
!! AATGTTAACCCAAATAATAA+TGG - chr3_1:89566772-89566791 None:intergenic 20.0%
!! GTTAACATTGAATTTAATGT+TGG + chr3_1:89566783-89566802 Msa0385850:CDS 20.0%
!!! GTTGGAATTGTATTATTTTT+AGG + chr3_1:89566801-89566820 Msa0385850:intron 20.0%
!!! ACATTTTTCTCCTTAATTTA+AGG - chr3_1:89566985-89567004 None:intergenic 20.0%
!! ATGTTACAATGGAAAATAAA+AGG + chr3_1:89567001-89567020 Msa0385850:intron 20.0%
!! TAAGATAGGAAACTAAATAT+TGG + chr3_1:89567060-89567079 Msa0385850:intron 20.0%
!!! CTTTTTTATTAAATGAGGAA+AGG - chr3_1:89567143-89567162 None:intergenic 20.0%
!!! GATTTCTTCAAATTGATTTA+TGG + chr3_1:89567208-89567227 Msa0385850:intron 20.0%
!! AGTCTATAAAAAATCAGAAT+TGG - chr3_1:89567325-89567344 None:intergenic 20.0%
!! TAAGTTGCATATAAATCAAA+GGG - chr3_1:89567725-89567744 None:intergenic 20.0%
!! ATAAGTTGCATATAAATCAA+AGG - chr3_1:89567726-89567745 None:intergenic 20.0%
!! GAATCATTTAAATACAGAAA+AGG + chr3_1:89567767-89567786 Msa0385850:three_prime_UTR 20.0%
!!! TATTTGATTGTTTACACTTT+TGG + chr3_1:89567805-89567824 Msa0385850:three_prime_UTR 20.0%
! TTATATATATAACCGTACGT+GGG + chr3_1:89563778-89563797 Msa0385850:five_prime_UTR 25.0%
! ACAAACAATTCCATAAATTC+CGG - chr3_1:89564434-89564453 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr3_1:89564571-89564590 Msa0385850:intron 25.0%
! CATTCAATTAATGACGTATA+TGG - chr3_1:89564610-89564629 None:intergenic 25.0%
!! TTCTGTTATTAATTAGGTTG+TGG + chr3_1:89564732-89564751 Msa0385850:intron 25.0%
! GTTATAGAAAAAAATTGAGG+GGG - chr3_1:89564799-89564818 None:intergenic 25.0%
! AATTGCAACTGTAAGATTAT+CGG + chr3_1:89564819-89564838 Msa0385850:intron 25.0%
! AAAAATTAGTTGAAGAGAGA+GGG - chr3_1:89564851-89564870 None:intergenic 25.0%
! TAAAAATTAGTTGAAGAGAG+AGG - chr3_1:89564852-89564871 None:intergenic 25.0%
!! AAAATTAAACAAGTACCGTA+CGG - chr3_1:89565043-89565062 None:intergenic 25.0%
! AATGAACTTATATCAGTTCT+TGG - chr3_1:89565223-89565242 None:intergenic 25.0%
!! TTATTTAGGATTGCTGTATA+TGG - chr3_1:89565274-89565293 None:intergenic 25.0%
!! AGAGAAAGTATAAAGCAAAA+AGG - chr3_1:89565434-89565453 None:intergenic 25.0%
! ACATAAAACTCTTCATTCTT+AGG - chr3_1:89565788-89565807 None:intergenic 25.0%
!!! AGTTTTATGTCTTGTGAATT+TGG + chr3_1:89565798-89565817 Msa0385850:intron 25.0%
!!! GTGATCAATTTTGAAAATAC+GGG + chr3_1:89566283-89566302 Msa0385850:intron 25.0%
! GAGATGTAATTCTAGATATT+TGG - chr3_1:89566365-89566384 None:intergenic 25.0%
! GTTAAATCCTACATGAAAAA+AGG - chr3_1:89566543-89566562 None:intergenic 25.0%
! TCTGTTCACCATTATTATTT+GGG + chr3_1:89566761-89566780 Msa0385850:CDS 25.0%
!! TGTGTTTTATGTGTTTATCA+TGG + chr3_1:89566829-89566848 Msa0385850:intron 25.0%
! AAAGGCTATTGAAAAACAAT+AGG + chr3_1:89566891-89566910 Msa0385850:intron 25.0%
! TAAGGAGAAAAATGTTACAA+TGG + chr3_1:89566990-89567009 Msa0385850:intron 25.0%
!! TTCCTATCTTATTGTTTTCT+AGG - chr3_1:89567051-89567070 None:intergenic 25.0%
!! ATTGGAATATTTTCCAATAG+AGG + chr3_1:89567078-89567097 Msa0385850:intron 25.0%
!!! CAGTGCTTTTTTATTAAATG+AGG - chr3_1:89567148-89567167 None:intergenic 25.0%
! TAATAGTCTAACTGACTATA+GGG + chr3_1:89567168-89567187 Msa0385850:intron 25.0%
! AATTTGAAGAAATCTAGTTG+TGG - chr3_1:89567202-89567221 None:intergenic 25.0%
! TACTTCATGACCAAATTTAT+CGG - chr3_1:89567511-89567530 None:intergenic 25.0%
!! AAAGGTGCAAAATCTAATTA+GGG - chr3_1:89567561-89567580 None:intergenic 25.0%
!! AAAAGGTGCAAAATCTAATT+AGG - chr3_1:89567562-89567581 None:intergenic 25.0%
!! TTTTGCACCTTTTTATTGAT+TGG + chr3_1:89567569-89567588 Msa0385850:three_prime_UTR 25.0%
!! TTTTGGATTGAATAATCTGA+AGG + chr3_1:89567822-89567841 Msa0385850:three_prime_UTR 25.0%
AACAATCACATTGTAAAGTG+TGG + chr3_1:89563754-89563773 Msa0385850:five_prime_UTR 30.0%
ACAATCACATTGTAAAGTGT+GGG + chr3_1:89563755-89563774 Msa0385850:five_prime_UTR 30.0%
GTTATATATATAACCGTACG+TGG + chr3_1:89563777-89563796 Msa0385850:five_prime_UTR 30.0%
GAAGAAGATAGTATGAATTG+AGG - chr3_1:89563968-89563987 None:intergenic 30.0%
TCCAGAAATTCAAACCATAA+AGG + chr3_1:89564052-89564071 Msa0385850:CDS 30.0%
TCCTTTATGGTTTGAATTTC+TGG - chr3_1:89564056-89564075 None:intergenic 30.0%
!! TGAAAGAAAGTGTTCCTTTA+TGG - chr3_1:89564069-89564088 None:intergenic 30.0%
! GTTTTGCTTATAATAGTGAC+CGG - chr3_1:89564536-89564555 None:intergenic 30.0%
AGAAAGAAATCACATTCACT+AGG - chr3_1:89564716-89564735 None:intergenic 30.0%
! AAATTAAACAAGTACCGTAC+GGG - chr3_1:89565042-89565061 None:intergenic 30.0%
ACGATAAAACTGTACCAAAA+AGG + chr3_1:89565100-89565119 Msa0385850:intron 30.0%
!!! TGTAATGACTTTTTTGCTTG+TGG + chr3_1:89565328-89565347 Msa0385850:intron 30.0%
!! CATAATGTTGCTTTAGCAAT+TGG - chr3_1:89565382-89565401 None:intergenic 30.0%
! ATTTCTCTTCCTTGTCTTTT+TGG + chr3_1:89565638-89565657 Msa0385850:intron 30.0%
! TTTCTCTTCCTTGTCTTTTT+GGG + chr3_1:89565639-89565658 Msa0385850:intron 30.0%
! TCAGAAGTTATTGAAGTGTT+TGG + chr3_1:89565672-89565691 Msa0385850:intron 30.0%
! TTGTTGGGTATATTAGTTTC+AGG + chr3_1:89565762-89565781 Msa0385850:intron 30.0%
GTACATTGAAATACTTGAAG+CGG + chr3_1:89566047-89566066 Msa0385850:CDS 30.0%
! GTTCTTAAATTTTAAGCGCA+GGG - chr3_1:89566478-89566497 None:intergenic 30.0%
! TGTTCTTAAATTTTAAGCGC+AGG - chr3_1:89566479-89566498 None:intergenic 30.0%
TGAAAAAAGGAAGGTTACTA+TGG - chr3_1:89566530-89566549 None:intergenic 30.0%
!!! TAACCTTCCTTTTTTCATGT+AGG + chr3_1:89566533-89566552 Msa0385850:intron 30.0%
AATCCTACATGAAAAAAGGA+AGG - chr3_1:89566539-89566558 None:intergenic 30.0%
TAATGAAGTCTCCTTAAGAA+CGG - chr3_1:89566696-89566715 None:intergenic 30.0%
CTCTGTTCACCATTATTATT+TGG + chr3_1:89566760-89566779 Msa0385850:CDS 30.0%
! GTTTTATGTGTTTATCATGG+AGG + chr3_1:89566832-89566851 Msa0385850:intron 30.0%
TGCCTAGAAAACAATAAGAT+AGG + chr3_1:89567046-89567065 Msa0385850:intron 30.0%
GTAATAGTCTAACTGACTAT+AGG + chr3_1:89567167-89567186 Msa0385850:intron 30.0%
AATGATACTACTGACAGTAA+TGG - chr3_1:89567280-89567299 None:intergenic 30.0%
! ATAAAGCAGTTTTCCAAGTT+CGG - chr3_1:89567370-89567389 None:intergenic 30.0%
AACTTGGAAAACTGCTTTAT+TGG + chr3_1:89567370-89567389 Msa0385850:CDS 30.0%
! AAAACTGCTTTATTGGTTGA+TGG + chr3_1:89567377-89567396 Msa0385850:CDS 30.0%
CCTTCATCCAATCAATAAAA+AGG - chr3_1:89567579-89567598 None:intergenic 30.0%
!! CCTTTTTATTGATTGGATGA+AGG + chr3_1:89567576-89567595 Msa0385850:three_prime_UTR 30.0%
TCTCCAAATAGTTAATGTGA+GGG + chr3_1:89567652-89567671 Msa0385850:three_prime_UTR 30.0%
! AAAAGTTCCATTTTACCAAG+CGG - chr3_1:89567691-89567710 None:intergenic 30.0%
AAATGATTCACCATAGTTTC+AGG - chr3_1:89567756-89567775 None:intergenic 30.0%
TCAAGCATCCAAAAATGATG+CGG + chr3_1:89564093-89564112 Msa0385850:CDS 35.0%
AACGTAATTCCCATGGAATA+GGG + chr3_1:89564225-89564244 Msa0385850:intron 35.0%
AATAGGGCAAGTGTAGAATA+GGG + chr3_1:89564241-89564260 Msa0385850:intron 35.0%
ATAACAAGACAACACGTTAC+CGG - chr3_1:89564473-89564492 None:intergenic 35.0%
! GGTTTGCTTATAATAGTGAC+CGG + chr3_1:89564645-89564664 Msa0385850:intron 35.0%
AGAAATCACATTCACTAGGA+TGG - chr3_1:89564712-89564731 None:intergenic 35.0%
!! ATAGTGGATAGCTAATCTCT+TGG + chr3_1:89564930-89564949 Msa0385850:intron 35.0%
TTATTTCCCAACTTTCTCTG+CGG + chr3_1:89564981-89565000 Msa0385850:intron 35.0%
! AATTAAACAAGTACCGTACG+GGG - chr3_1:89565041-89565060 None:intergenic 35.0%
AAACTGTACCAAAAAGGATG+CGG + chr3_1:89565106-89565125 Msa0385850:intron 35.0%
GAACTTATATCAGTTCTTGG+TGG - chr3_1:89565220-89565239 None:intergenic 35.0%
TCACACTGAAATAAGAAGCA+TGG - chr3_1:89565457-89565476 None:intergenic 35.0%
TAGAAATGCACAATACCGTT+TGG + chr3_1:89565555-89565574 Msa0385850:CDS 35.0%
AACTTTCTTGCAGTTCCAAA+CGG - chr3_1:89565573-89565592 None:intergenic 35.0%
! TTTGGAACTGCAAGAAAGTT+TGG + chr3_1:89565573-89565592 Msa0385850:CDS 35.0%
CACATAATCCCAAAAAGACA+AGG - chr3_1:89565650-89565669 None:intergenic 35.0%
!!! CTTGTCTTTTTGGGATTATG+TGG + chr3_1:89565648-89565667 Msa0385850:intron 35.0%
AAGTGTTTGGATAACTCCTA+GGG + chr3_1:89565685-89565704 Msa0385850:intron 35.0%
AAAACCTCATTGCTGCTAAA+TGG + chr3_1:89565827-89565846 Msa0385850:intron 35.0%
! ATGGCTGTGACATTTTCTTT+TGG + chr3_1:89565846-89565865 Msa0385850:intron 35.0%
! TACAGACTAAAGCATTCACT+TGG - chr3_1:89565896-89565915 None:intergenic 35.0%
! ATGTTTCAGGTGAAGTCATT+AGG + chr3_1:89565983-89566002 Msa0385850:CDS 35.0%
ATTAGGTGGAACAACATTTC+TGG + chr3_1:89566000-89566019 Msa0385850:CDS 35.0%
!! TTTTTAGCATCCATTCTCTC+AGG - chr3_1:89566027-89566046 None:intergenic 35.0%
CAATGCACAAAATGAACTGT+TGG + chr3_1:89566110-89566129 Msa0385850:CDS 35.0%
AAATCAACCTTCAAATTCCG+AGG - chr3_1:89566156-89566175 None:intergenic 35.0%
AACACCATATTAAACCTACC+TGG - chr3_1:89566397-89566416 None:intergenic 35.0%
! AAATTTTAAGCGCAGGGAAT+GGG - chr3_1:89566472-89566491 None:intergenic 35.0%
! TAAATTTTAAGCGCAGGGAA+TGG - chr3_1:89566473-89566492 None:intergenic 35.0%
TAGGATTTAACTAGTAGTGC+TGG + chr3_1:89566552-89566571 Msa0385850:intron 35.0%
! TACATTTATAAAGCGCCTAC+TGG + chr3_1:89566599-89566618 Msa0385850:CDS 35.0%
AATGAAGTCTCCTTAAGAAC+GGG - chr3_1:89566695-89566714 None:intergenic 35.0%
GAACTCTTATGTTACCTGAT+TGG + chr3_1:89566858-89566877 Msa0385850:intron 35.0%
CTTTCATGTACTTTCCAATC+AGG - chr3_1:89566875-89566894 None:intergenic 35.0%
! CTGATTGGAAAGTACATGAA+AGG + chr3_1:89566873-89566892 Msa0385850:intron 35.0%
TCACTATAAAAACCAGCCTT+GGG - chr3_1:89566944-89566963 None:intergenic 35.0%
CTCGTCAATTGAGATAGTAA+GGG - chr3_1:89567104-89567123 None:intergenic 35.0%
TCTCGTCAATTGAGATAGTA+AGG - chr3_1:89567105-89567124 None:intergenic 35.0%
!! TTTATTGGTTGATGGTGGTT+GGG + chr3_1:89567385-89567404 Msa0385850:CDS 35.0%
CATTGAAGTTCGTTATGACA+TGG + chr3_1:89567422-89567441 Msa0385850:CDS 35.0%
!! TATGACATGGAAAGAGTACT+TGG + chr3_1:89567435-89567454 Msa0385850:CDS 35.0%
GTTTAAGCAGCCGATAAATT+TGG + chr3_1:89567498-89567517 Msa0385850:exon 35.0%
! CAAAATCTAATTAGGGCACT+TGG - chr3_1:89567554-89567573 None:intergenic 35.0%
GTCTCCAAATAGTTAATGTG+AGG + chr3_1:89567651-89567670 Msa0385850:three_prime_UTR 35.0%
TTACCAAGCGGAAAAAAGAA+TGG - chr3_1:89567679-89567698 None:intergenic 35.0%
!!! CTTTTTTCCGCTTGGTAAAA+TGG + chr3_1:89567681-89567700 Msa0385850:three_prime_UTR 35.0%
TATTTGACAGCCTGAAACTA+TGG + chr3_1:89567743-89567762 Msa0385850:three_prime_UTR 35.0%
TATATATAACCGTACGTGGG+AGG + chr3_1:89563781-89563800 Msa0385850:five_prime_UTR 40.0%
GTCTAGTGGGAAGTAAAACA+AGG + chr3_1:89563847-89563866 Msa0385850:five_prime_UTR 40.0%
ACAGTGAACTATGCTTTGTG+CGG - chr3_1:89563873-89563892 None:intergenic 40.0%
TATGAATTGAGGTCTGAGTG+GGG - chr3_1:89563957-89563976 None:intergenic 40.0%
GTATGAATTGAGGTCTGAGT+GGG - chr3_1:89563958-89563977 None:intergenic 40.0%
AGTATGAATTGAGGTCTGAG+TGG - chr3_1:89563959-89563978 None:intergenic 40.0%
CTGGAAAAAGCAATTGACGA+AGG - chr3_1:89564037-89564056 None:intergenic 40.0%
CAAGCATCCAAAAATGATGC+GGG + chr3_1:89564094-89564113 Msa0385850:CDS 40.0%
ACTTGTGAACGTAATTCCCA+TGG + chr3_1:89564218-89564237 Msa0385850:intron 40.0%
GAACGTAATTCCCATGGAAT+AGG + chr3_1:89564224-89564243 Msa0385850:intron 40.0%
GAATAGGGCAAGTGTAGAAT+AGG + chr3_1:89564240-89564259 Msa0385850:intron 40.0%
TTTCTCTTCTGCTCTTTGAC+TGG - chr3_1:89564382-89564401 None:intergenic 40.0%
GAGCAGAAGAGAAATCTTAC+TGG + chr3_1:89564388-89564407 Msa0385850:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr3_1:89564649-89564668 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr3_1:89564648-89564667 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr3_1:89564648-89564667 Msa0385850:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr3_1:89564649-89564668 Msa0385850:intron 40.0%
TACTTGTATTGTACACCCTC+CGG - chr3_1:89564667-89564686 None:intergenic 40.0%
CAGACGGTGACAAATATGAT+TGG + chr3_1:89564766-89564785 Msa0385850:CDS 40.0%
! TTCTACATGCTGGTTATGTC+TGG + chr3_1:89564902-89564921 Msa0385850:intron 40.0%
! TCTACATGCTGGTTATGTCT+GGG + chr3_1:89564903-89564922 Msa0385850:intron 40.0%
GTTATGTCTGGGTGTAATAG+TGG + chr3_1:89564914-89564933 Msa0385850:intron 40.0%
AACTGTACCAAAAAGGATGC+GGG + chr3_1:89565107-89565126 Msa0385850:intron 40.0%
!! AGTAGCAAAAGTGCTCAGAT+TGG + chr3_1:89565141-89565160 Msa0385850:intron 40.0%
!!! CGAGTGATAGTTTTAGCACT+AGG + chr3_1:89565352-89565371 Msa0385850:intron 40.0%
!!! GTGATAGTTTTAGCACTAGG+TGG + chr3_1:89565355-89565374 Msa0385850:intron 40.0%
CAACATTATGCCATCTAGCT+GGG + chr3_1:89565392-89565411 Msa0385850:intron 40.0%
ATGTACAGTGTCATGATGAC+TGG + chr3_1:89565523-89565542 Msa0385850:CDS 40.0%
! ACCTTTTTATCTTGCACGTC+CGG - chr3_1:89565613-89565632 None:intergenic 40.0%
! GAAGTGTTTGGATAACTCCT+AGG + chr3_1:89565684-89565703 Msa0385850:intron 40.0%
CTAATATCCTTTGTGTGTCG+TGG + chr3_1:89565715-89565734 Msa0385850:intron 40.0%
ATATTCCAGACTATGCACCT+GGG + chr3_1:89565950-89565969 Msa0385850:CDS 40.0%
! GAAACATTCTTTTGTGTCCC+AGG - chr3_1:89565970-89565989 None:intergenic 40.0%
GGGACACAAAAGAATGTTTC+AGG + chr3_1:89565970-89565989 Msa0385850:CDS 40.0%
! TTTCAGGTGAAGTCATTAGG+TGG + chr3_1:89565986-89566005 Msa0385850:CDS 40.0%
GAGGAGTTAAATCGTCAAGT+TGG + chr3_1:89566075-89566094 Msa0385850:CDS 40.0%
AGCACCAGGTAGGTTTAATA+TGG + chr3_1:89566390-89566409 Msa0385850:intron 40.0%
! TTTAACTAGTAGTGCTGGAG+AGG + chr3_1:89566557-89566576 Msa0385850:CDS 40.0%
TGCAGATCCTACTCAAATGA+AGG + chr3_1:89566626-89566645 Msa0385850:CDS 40.0%
AGGCAAACCTTCATTTGAGT+AGG - chr3_1:89566636-89566655 None:intergenic 40.0%
GAAGGCAATTAGAGATATCG+AGG - chr3_1:89566656-89566675 None:intergenic 40.0%
CTCACTATAAAAACCAGCCT+TGG - chr3_1:89566945-89566964 None:intergenic 40.0%
!!! CAAGGCTGGTTTTTATAGTG+AGG + chr3_1:89566943-89566962 Msa0385850:intron 40.0%
TGAAGAAATCTAGTTGTGGC+AGG - chr3_1:89567198-89567217 None:intergenic 40.0%
GGACTGTGTGATTGTTTGAT+CGG + chr3_1:89567230-89567249 Msa0385850:intron 40.0%
GACTGTGTGATTGTTTGATC+GGG + chr3_1:89567231-89567250 Msa0385850:intron 40.0%
ACTGTGTGATTGTTTGATCG+GGG + chr3_1:89567232-89567251 Msa0385850:intron 40.0%
AGTAATGGCAAGCAAAGAGA+AGG - chr3_1:89567265-89567284 None:intergenic 40.0%
!! ACTGCTTTATTGGTTGATGG+TGG + chr3_1:89567380-89567399 Msa0385850:CDS 40.0%
!! CTTTATTGGTTGATGGTGGT+TGG + chr3_1:89567384-89567403 Msa0385850:CDS 40.0%
! GCTTAAACATTTTCACCTGG+CGG - chr3_1:89567486-89567505 None:intergenic 40.0%
! GCTGCTTAAACATTTTCACC+TGG - chr3_1:89567489-89567508 None:intergenic 40.0%
! TATTGATTGGATGAAGGCCT+AGG + chr3_1:89567582-89567601 Msa0385850:three_prime_UTR 40.0%
TTCTCCTTTATGTCACTCCT+AGG - chr3_1:89567602-89567621 None:intergenic 40.0%
TAGGAGTGACATAAAGGAGA+AGG + chr3_1:89567601-89567620 Msa0385850:three_prime_UTR 40.0%
!!! CTTTTAGAGTTCCGGATTAG+TGG + chr3_1:89567629-89567648 Msa0385850:three_prime_UTR 40.0%
CTATTTGGAGACCACTAATC+CGG - chr3_1:89567643-89567662 None:intergenic 40.0%
GGTCCCTCACATTAACTATT+TGG - chr3_1:89567658-89567677 None:intergenic 40.0%
ATGAATTGAGGTCTGAGTGG+GGG - chr3_1:89563956-89563975 None:intergenic 45.0%
TTGACGAAGGTGAACGAGTT+CGG - chr3_1:89564024-89564043 None:intergenic 45.0%
! GGATTCACCCGCATCATTTT+TGG - chr3_1:89564104-89564123 None:intergenic 45.0%
GGTGAATCCAAATCCCCTAA+CGG + chr3_1:89564115-89564134 Msa0385850:CDS 45.0%
!! AAAGTACCAGAGTGCCGTTA+GGG - chr3_1:89564132-89564151 None:intergenic 45.0%
!! AAAAGTACCAGAGTGCCGTT+AGG - chr3_1:89564133-89564152 None:intergenic 45.0%
CTACACTTGCCCTATTCCAT+GGG - chr3_1:89564237-89564256 None:intergenic 45.0%
TCTACACTTGCCCTATTCCA+TGG - chr3_1:89564238-89564257 None:intergenic 45.0%
TTCCATAAATTCCGGCTGCA+CGG - chr3_1:89564426-89564445 None:intergenic 45.0%
!! TGTAAAAAGAGCACCTCCAC+CGG + chr3_1:89564451-89564470 Msa0385850:CDS 45.0%
TGTGGATGCTATGAGACAGA+CGG + chr3_1:89564750-89564769 Msa0385850:CDS 45.0%
GATAGGCAGTTTCTACATGC+TGG + chr3_1:89564892-89564911 Msa0385850:intron 45.0%
GACTAACCGCAGAGAAAGTT+GGG - chr3_1:89564990-89565009 None:intergenic 45.0%
AGACTAACCGCAGAGAAAGT+TGG - chr3_1:89564991-89565010 None:intergenic 45.0%
TACGGGGTAGAGCATACAAA+AGG - chr3_1:89565025-89565044 None:intergenic 45.0%
TTTGTATGCTCTACCCCGTA+CGG + chr3_1:89565025-89565044 Msa0385850:intron 45.0%
!! AAAAGTGCTCAGATTGGCCT+GGG + chr3_1:89565147-89565166 Msa0385850:intron 45.0%
! TCAGTTCTTGGTGGTCTTTC+TGG - chr3_1:89565211-89565230 None:intergenic 45.0%
GCAACATTATGCCATCTAGC+TGG + chr3_1:89565391-89565410 Msa0385850:intron 45.0%
TGTGAATCAACCCAGCTAGA+TGG - chr3_1:89565405-89565424 None:intergenic 45.0%
CATAAGCTGTGCAAGGTTCT+CGG - chr3_1:89565506-89565525 None:intergenic 45.0%
CACTGTACATAAGCTGTGCA+AGG - chr3_1:89565513-89565532 None:intergenic 45.0%
! TTTGGAACAAGTTGCCCTTC+CGG + chr3_1:89565591-89565610 Msa0385850:CDS 45.0%
TTTATCTTGCACGTCCGGAA+GGG - chr3_1:89565608-89565627 None:intergenic 45.0%
! TTTTATCTTGCACGTCCGGA+AGG - chr3_1:89565609-89565628 None:intergenic 45.0%
TCCGGACGTGCAAGATAAAA+AGG + chr3_1:89565609-89565628 Msa0385850:CDS 45.0%
GGATATTAGCTACACACCCT+AGG - chr3_1:89565704-89565723 None:intergenic 45.0%
TGCTATTCCACGACACACAA+AGG - chr3_1:89565725-89565744 None:intergenic 45.0%
ACAGCCATTTAGCAGCAATG+AGG - chr3_1:89565834-89565853 None:intergenic 45.0%
GATATTCCAGACTATGCACC+TGG + chr3_1:89565949-89565968 Msa0385850:CDS 45.0%
! CATTTCTGGACCTGAGAGAA+TGG + chr3_1:89566014-89566033 Msa0385850:CDS 45.0%
AATACTTGAAGCGGAGATCG+AGG + chr3_1:89566056-89566075 Msa0385850:CDS 45.0%
ACCTGAAATCTCTTGAGCCT+CGG + chr3_1:89566136-89566155 Msa0385850:CDS 45.0%
TCTTGAGCCTCGGAATTTGA+AGG + chr3_1:89566146-89566165 Msa0385850:CDS 45.0%
CAGTACAGATCAGCATAGAG+AGG - chr3_1:89566252-89566271 None:intergenic 45.0%
TTACATCTCTGTTCAGCACC+AGG + chr3_1:89566376-89566395 Msa0385850:intron 45.0%
GGACATGGGAGAAAAACAGA+AGG - chr3_1:89566674-89566693 None:intergenic 45.0%
TCTCCTTAAGAACGGGACAT+GGG - chr3_1:89566688-89566707 None:intergenic 45.0%
TTTGACAGACTGCAAGGACA+AGG - chr3_1:89566721-89566740 None:intergenic 45.0%
GTCGAATTTGACAGACTGCA+AGG - chr3_1:89566727-89566746 None:intergenic 45.0%
GAGATAGTAAGGGCCTCTAT+TGG - chr3_1:89567094-89567113 None:intergenic 45.0%
TGAGGAAAGGATTCGAGACA+GGG - chr3_1:89567130-89567149 None:intergenic 45.0%
ATGAGGAAAGGATTCGAGAC+AGG - chr3_1:89567131-89567150 None:intergenic 45.0%
! AAGTACTGTTGTCCCCAAGT+CGG + chr3_1:89567526-89567545 Msa0385850:three_prime_UTR 45.0%
AAGGCCTAGGAGTGACATAA+AGG + chr3_1:89567595-89567614 Msa0385850:three_prime_UTR 45.0%
!!! AGGCTGCACTTTTAGAGTTC+CGG + chr3_1:89567621-89567640 Msa0385850:three_prime_UTR 45.0%
!!! GGACCATTCTTTTTTCCGCT+TGG + chr3_1:89567673-89567692 Msa0385850:three_prime_UTR 45.0%
!!! AAAATAAATAATATTTTTGT+TGG + chr3_1:89565746-89565765 Msa0385850:intron 5.0%
!!! AAATAAATAATATTTTTGTT+GGG + chr3_1:89565747-89565766 Msa0385850:intron 5.0%
ATATAACCGTACGTGGGAGG+TGG + chr3_1:89563784-89563803 Msa0385850:five_prime_UTR 50.0%
TGATTTCCACCTCCCACGTA+CGG - chr3_1:89563793-89563812 None:intergenic 50.0%
CCACTAGACAGACACACAGA+CGG - chr3_1:89563836-89563855 None:intergenic 50.0%
CGTCTGTGTGTCTGTCTAGT+GGG + chr3_1:89563834-89563853 Msa0385850:five_prime_UTR 50.0%
!! AAGTACCAGAGTGCCGTTAG+GGG - chr3_1:89564131-89564150 None:intergenic 50.0%
ACAAGACAACACGTTACCGG+TGG - chr3_1:89564470-89564489 None:intergenic 50.0%
CGATTGTCATGTACACCCTC+CGG + chr3_1:89564514-89564533 Msa0385850:intron 50.0%
! AGCTATGCCCGCATCCTTTT+TGG - chr3_1:89565117-89565136 None:intergenic 50.0%
!! CAAAAGTGCTCAGATTGGCC+TGG + chr3_1:89565146-89565165 Msa0385850:intron 50.0%
! GGTCTTTCTGGCACAATGGT+CGG - chr3_1:89565199-89565218 None:intergenic 50.0%
! TGGTGGTCTTTCTGGCACAA+TGG - chr3_1:89565203-89565222 None:intergenic 50.0%
TCCGAGGCTCAAGAGATTTC+AGG - chr3_1:89566140-89566159 None:intergenic 50.0%
AGTCCACATCAGCTGGATGA+AGG - chr3_1:89566213-89566232 None:intergenic 50.0%
ATCTCTGTTCAGCACCAGGT+AGG + chr3_1:89566380-89566399 Msa0385850:intron 50.0%
! TTTTAAGCGCAGGGAATGGG+AGG - chr3_1:89566469-89566488 None:intergenic 50.0%
TAGGATCTGCAACAGCCAGT+AGG - chr3_1:89566617-89566636 None:intergenic 50.0%
TCTCCCATGTCCCGTTCTTA+AGG + chr3_1:89566682-89566701 Msa0385850:intron 50.0%
GTCTCCTTAAGAACGGGACA+TGG - chr3_1:89566689-89566708 None:intergenic 50.0%
TTGCGTTATTCCTCAGCCCA+AGG + chr3_1:89566925-89566944 Msa0385850:intron 50.0%
TAAAAACCAGCCTTGGGCTG+AGG - chr3_1:89566938-89566957 None:intergenic 50.0%
GAGACTAGTGCATCCGAACT+TGG + chr3_1:89567354-89567373 Msa0385850:CDS 50.0%
ACTTGGAACTCCTGCAAAGC+TGG + chr3_1:89567452-89567471 Msa0385850:CDS 50.0%
GACAGACACACAGACGGACA+GGG - chr3_1:89563830-89563849 None:intergenic 55.0%
AGACAGACACACAGACGGAC+AGG - chr3_1:89563831-89563850 None:intergenic 55.0%
CCGTCTGTGTGTCTGTCTAG+TGG + chr3_1:89563833-89563852 Msa0385850:five_prime_UTR 55.0%
!! CAGAGTGCCGTTAGGGGATT+TGG - chr3_1:89564125-89564144 None:intergenic 55.0%
CAAATCCCCTAACGGCACTC+TGG + chr3_1:89564123-89564142 Msa0385850:CDS 55.0%
GTATGTCAAGACCGTGCAGC+CGG + chr3_1:89564412-89564431 Msa0385850:CDS 55.0%
GACCGTGCAGCCGGAATTTA+TGG + chr3_1:89564421-89564440 Msa0385850:CDS 55.0%
AGACAACACGTTACCGGTGG+AGG - chr3_1:89564467-89564486 None:intergenic 55.0%
!! TCAGATTGGCCTGGGAACAC+TGG + chr3_1:89565155-89565174 Msa0385850:intron 55.0%
GTTTGAACGCCAGTGTTCCC+AGG - chr3_1:89565167-89565186 None:intergenic 55.0%
! GCACAATGGTCGGTTCTTGG+CGG - chr3_1:89565189-89565208 None:intergenic 55.0%
! CTGGCACAATGGTCGGTTCT+TGG - chr3_1:89565192-89565211 None:intergenic 55.0%
TGTGTCCCAGGTGCATAGTC+TGG - chr3_1:89565958-89565977 None:intergenic 55.0%
CACATCAGCTGGATGAAGGC+AGG - chr3_1:89566209-89566228 None:intergenic 55.0%
CTGCCTTCATCCAGCTGATG+TGG + chr3_1:89566207-89566226 Msa0385850:intron 55.0%
AGCAGACAGTCCACATCAGC+TGG - chr3_1:89566220-89566239 None:intergenic 55.0%
GTTATTCCTCAGCCCAAGGC+TGG + chr3_1:89566929-89566948 Msa0385850:intron 55.0%
GGCAATTCAGCCAGCTTTGC+AGG - chr3_1:89567465-89567484 None:intergenic 55.0%
AAGCTGGCTGAATTGCCGCC+AGG + chr3_1:89567468-89567487 Msa0385850:CDS 60.0%
! AGGGCACTTGGCTCCGACTT+GGG - chr3_1:89567542-89567561 None:intergenic 60.0%
! TAGGGCACTTGGCTCCGACT+TGG - chr3_1:89567543-89567562 None:intergenic 60.0%
! GGGCACTTGGCTCCGACTTG+GGG - chr3_1:89567541-89567560 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89563753 89567907 89563753 ID=Msa0385850;Name=Msa0385850
chr3_1 mRNA 89563753 89567907 89563753 ID=Msa0385850-mRNA-1;Parent=Msa0385850;Name=Msa0385850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=176|0.71|0.87|1|1|1|8|404|356
chr3_1 exon 89563753 89564144 89563753 ID=Msa0385850-mRNA-1:exon:24388;Parent=Msa0385850-mRNA-1
chr3_1 exon 89564383 89564472 89564383 ID=Msa0385850-mRNA-1:exon:24389;Parent=Msa0385850-mRNA-1
chr3_1 exon 89564748 89564828 89564748 ID=Msa0385850-mRNA-1:exon:24390;Parent=Msa0385850-mRNA-1
chr3_1 exon 89565499 89565630 89565499 ID=Msa0385850-mRNA-1:exon:24391;Parent=Msa0385850-mRNA-1
chr3_1 exon 89565949 89566167 89565949 ID=Msa0385850-mRNA-1:exon:24392;Parent=Msa0385850-mRNA-1
chr3_1 exon 89566555 89566647 89566555 ID=Msa0385850-mRNA-1:exon:24393;Parent=Msa0385850-mRNA-1
chr3_1 exon 89566732 89566809 89566732 ID=Msa0385850-mRNA-1:exon:24394;Parent=Msa0385850-mRNA-1
chr3_1 exon 89567342 89567907 89567342 ID=Msa0385850-mRNA-1:exon:24395;Parent=Msa0385850-mRNA-1
chr3_1 five_prime_UTR 89563753 89563928 89563753 ID=Msa0385850-mRNA-1:five_prime_utr;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89563929 89564144 89563929 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89564383 89564472 89564383 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89564748 89564828 89564748 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89565499 89565630 89565499 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89565949 89566167 89565949 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89566555 89566647 89566555 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89566732 89566809 89566732 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 CDS 89567342 89567503 89567342 ID=Msa0385850-mRNA-1:cds;Parent=Msa0385850-mRNA-1
chr3_1 three_prime_UTR 89567504 89567907 89567504 ID=Msa0385850-mRNA-1:three_prime_utr;Parent=Msa0385850-mRNA-1
Gene Sequence

>Msa0385850

ATGATGTATTTGTTGACTGCGAAACCCCCACTCAGACCTCAATTCATACTATCTTCTTCTTCTTCTTCAATTTCTACTTCTCGATTCTCTTTCCGAACTCGTTCACCTTCGTCAATTGCTTTTTCCAGAAATTCAAACCATAAAGGAACACTTTCTTTCAGAATTCAAGCATCCAAAAATGATGCGGGTGAATCCAAATCCCCTAACGGCACTCTGTCAAAGAGCAGAAGAGAAATCTTACTGGAGTATGTCAAGACCGTGCAGCCGGAATTTATGGAATTGTTTGTAAAAAGAGCACCTCCACCGGTTGTGGATGCTATGAGACAGACGGTGACAAATATGATTGGAACACTGCCCCCTCAATTTTTTTCTATAACAATTGCAACTGTAGCCGAGAACCTTGCACAGCTTATGTACAGTGTCATGATGACTGGATACATGTTTAGAAATGCACAATACCGTTTGGAACTGCAAGAAAGTTTGGAACAAGTTGCCCTTCCGGACGTGCAAGATAAAAAGGATATTCCAGACTATGCACCTGGGACACAAAAGAATGTTTCAGGTGAAGTCATTAGGTGGAACAACATTTCTGGACCTGAGAGAATGGATGCTAAAAAGTACATTGAAATACTTGAAGCGGAGATCGAGGAGTTAAATCGTCAAGTTGGAAGACAGTCTAGCAATGCACAAAATGAACTGTTGGAATACCTGAAATCTCTTGAGCCTCGGAATTTGAAGGATTTAACTAGTAGTGCTGGAGAGGATGTTGTGCTTGCGATGAATACATTTATAAAGCGCCTACTGGCTGTTGCAGATCCTACTCAAATGAAGTCTGTCAAATTCGACTTTTTCAAATTTGCTCTGTTCACCATTATTATTTGGGTTAACATTGAATTTAATGTTGGAATTACTAGTGTGACTGAGACTAGTGCATCCGAACTTGGAAAACTGCTTTATTGGTTGATGGTGGTTGGGTACAGCATTCGCAACATTGAAGTTCGTTATGACATGGAAAGAGTACTTGGAACTCCTGCAAAGCTGGCTGAATTGCCGCCAGGTGAAAATGTTTAA

Protein sequence

>Msa0385850

MMYLLTAKPPLRPQFILSSSSSSISTSRFSFRTRSPSSIAFSRNSNHKGTLSFRIQASKNDAGESKSPNGTLSKSRREILLEYVKTVQPEFMELFVKRAPPPVVDAMRQTVTNMIGTLPPQFFSITIATVAENLAQLMYSVMMTGYMFRNAQYRLELQESLEQVALPDVQDKKDIPDYAPGTQKNVSGEVIRWNNISGPERMDAKKYIEILEAEIEELNRQVGRQSSNAQNELLEYLKSLEPRNLKDLTSSAGEDVVLAMNTFIKRLLAVADPTQMKSVKFDFFKFALFTIIIWVNIEFNVGITSVTETSASELGKLLYWLMVVGYSIRNIEVRYDMERVLGTPAKLAELPPGENV*